RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy959
(109 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 94.9 bits (235), Expect = 3e-24
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 29 PIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV 88
P+ +Y+TDWG KI + + G ++ +++ P+G+ +D LYW D+
Sbjct: 523 PVH-GFMYWTDWGT---PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 578
Query: 89 REKIERSDLAGNNREALYLNK 109
I D+ G NR+ + ++
Sbjct: 579 LHSISSIDVNGGNRKTILEDE 599
Score = 75.3 bits (184), Expect = 2e-17
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
+Y+TD G + G +K + ++ S+P + +D +YWTD K
Sbjct: 483 SNIYWTDSVL----GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 538
Query: 92 IERSDLAGNNREAL 105
I++ L G + +L
Sbjct: 539 IKKGGLNGVDIYSL 552
Score = 61.0 bits (147), Expect = 2e-12
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 31 RLRTLYYTDWGRFGTAGKILRTTMAG----SLKKVIIEKDLSQPSGLAIDFDDEMLYWTD 86
+Y++D + I T + S +I +D+ P GLA+D+ +YWTD
Sbjct: 434 ASNRIYWSDL----SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 489
Query: 87 AVREKIERSDLAGNNREAL 105
+V + +D G R+ L
Sbjct: 490 SVLGTVSVADTKGVKRKTL 508
Score = 50.2 bits (119), Expect = 1e-08
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
LY+ D I + G +K I+E + ++ ++ ++WTD + E I
Sbjct: 570 GRLYWVDSKL----HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 625
Query: 93 ERSD-LAGNNREAL 105
++ L G++ L
Sbjct: 626 FSANRLTGSDVNLL 639
Score = 30.2 bits (67), Expect = 0.100
Identities = 10/68 (14%), Positives = 21/68 (30%)
Query: 36 YYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERS 95
+ F T +R + + +L L + +YW+D + I +
Sbjct: 392 VGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICST 451
Query: 96 DLAGNNRE 103
L +
Sbjct: 452 QLDRAHGV 459
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 94.5 bits (234), Expect = 3e-24
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 29 PIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV 88
P+ +Y+TDWG KI + + G ++ +++ P+G+ +D LYW D+
Sbjct: 505 PVH-GFMYWTDWGT---PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 560
Query: 89 REKIERSDLAGNNREALYLN 108
I D+ G NR+ + +
Sbjct: 561 LHSISSIDVNGGNRKTILED 580
Score = 74.1 bits (181), Expect = 4e-17
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
+Y+TD G + G +K + + S+P + +D +YWTD K
Sbjct: 465 SNIYWTDSVL----GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK 520
Query: 92 IERSDLAGNNREAL 105
I++ L G + +L
Sbjct: 521 IKKGGLNGVDIYSL 534
Score = 61.7 bits (149), Expect = 1e-12
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 31 RLRTLYYTDWGRFGTAGKILRTTMAG----SLKKVIIEKDLSQPSGLAIDFDDEMLYWTD 86
+Y++D + I T + S +I +D+ P GLA+D+ +YWTD
Sbjct: 416 ASNRIYWSDL----SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 471
Query: 87 AVREKIERSDLAGNNREAL 105
+V + +D G R+ L
Sbjct: 472 SVLGTVSVADTKGVKRKTL 490
Score = 50.6 bits (120), Expect = 9e-09
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
LY+ D I + G +K I+E + ++ ++ ++WTD + E I
Sbjct: 552 GRLYWVDSKL----HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 607
Query: 93 ERSD-LAGNNREALYLN 108
++ L G++ L N
Sbjct: 608 FSANRLTGSDVNLLAEN 624
Score = 31.7 bits (71), Expect = 0.032
Identities = 10/66 (15%), Positives = 21/66 (31%)
Query: 36 YYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERS 95
+ F T +R + + +L L + +YW+D + I +
Sbjct: 374 VGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICST 433
Query: 96 DLAGNN 101
L +
Sbjct: 434 QLDRAH 439
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 90.7 bits (224), Expect = 4e-23
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+Y+TDWG T KI + + G ++ +++ P+G+ +D LYW D+ I
Sbjct: 214 GFMYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270
Query: 93 ERSDLAGNNREALYLNK 109
D+ G NR+ + ++
Sbjct: 271 SSIDVNGGNRKTILEDE 287
Score = 68.3 bits (166), Expect = 4e-15
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
+Y+TD G + G +K + ++ S+P + +D +YWTD K
Sbjct: 171 SNIYWTDSVL----GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 226
Query: 92 IERSDLAGNNREAL 105
I++ L G + +L
Sbjct: 227 IKKGGLNGVDIYSL 240
Score = 61.0 bits (147), Expect = 2e-12
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 30 IRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR 89
+ +Y++D + L S +I +D+ P GLA+D+ +YWTD+V
Sbjct: 121 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 180
Query: 90 EKIERSDLAGNNREALY 106
+ +D G R+ L+
Sbjct: 181 GTVSVADTKGVKRKTLF 197
Score = 47.9 bits (113), Expect = 6e-08
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
LY+ D I + G +K I+E + ++ ++ ++WTD + E I
Sbjct: 258 GRLYWVDSKL----HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 313
Query: 93 ERSD-LAGNNREAL 105
++ L G++ L
Sbjct: 314 FSANRLTGSDVNLL 327
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 88.3 bits (218), Expect = 2e-22
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
T+Y+TDWG +I ++M GS +++I + L P+GL ID+ +YW DA I
Sbjct: 214 GTIYWTDWG---NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 270
Query: 93 ERSDLAGNNREALYLNK 109
ER++L G++R+A+
Sbjct: 271 ERANLDGSHRKAVISQG 287
Score = 66.7 bits (162), Expect = 2e-14
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
LY+TD G +I + G+ +KV++ + L +P +A+ + +YWTD +
Sbjct: 171 DKLYWTDSGT----SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 226
Query: 92 IERSDLAGNNREAL 105
IE S + G+ R +
Sbjct: 227 IEASSMDGSGRRII 240
Score = 64.8 bits (157), Expect = 7e-14
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 30 IRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR 89
R ++++D +ILR + GS + ++ L P GLA+D+ + LYWTD+
Sbjct: 125 HRRELVFWSDVTL----DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT 180
Query: 90 EKIERSDLAGNNREALY 106
+IE ++L G +R+ L
Sbjct: 181 SRIEVANLDGAHRKVLL 197
Score = 49.8 bits (118), Expect = 1e-08
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
R +Y+ D I R + GS +K +I + L P + + D LYWTD + I
Sbjct: 258 RRMYWVDAKH----HVIERANLDGSHRKAVISQGLPHPFAITVFED--SLYWTDWHTKSI 311
Query: 93 ERSD-LAGNNREAL 105
++ G N+E +
Sbjct: 312 NSANKFTGKNQEII 325
Score = 27.8 bits (61), Expect = 0.76
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 67 LSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
L L E+++W+D ++I R++L G+N E +
Sbjct: 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 153
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 81.0 bits (200), Expect = 4e-20
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
LY+TDW R KI + M G+ ++++ + +L P+GL D L W DA +
Sbjct: 134 GNLYWTDWNR--DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA 191
Query: 93 ERSDLAGNNREALY 106
E + A R +
Sbjct: 192 ECLNPAQPGRRKVL 205
Score = 69.5 bits (170), Expect = 9e-16
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+ +Y+TD I R ++ G II +DL P G+A+D ++WTD+ ++I
Sbjct: 48 KVVYWTDIS----EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRI 103
Query: 93 ERSDLAGNNREALY 106
E + + G R L+
Sbjct: 104 EVAKMDGTQRRVLF 117
Score = 63.3 bits (154), Expect = 1e-13
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE-- 90
RT+++TD +I M G+ ++V+ + L P G+ D LYWTD R+
Sbjct: 91 RTIFWTDSQL----DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNP 146
Query: 91 KIERSDLAGNNREAL 105
KIE S + G NR L
Sbjct: 147 KIETSHMDGTNRRIL 161
Score = 52.9 bits (127), Expect = 9e-10
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
L + G+ + R TM + K + GLA D D+++YWTD I R
Sbjct: 4 LLFAQTGKIERLP-LERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 95 SDLAGNNREAL 105
+ L G +
Sbjct: 63 ASLHGGEPTTI 73
Score = 49.4 bits (118), Expect = 2e-08
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
L + D G + A ++ ++E L P + LY+TD +
Sbjct: 179 SQLCWVDAGT----HRAECLNPAQPGRRKVLE-GLQYPFAVTSYGK--NLYYTDWKTNSV 231
Query: 93 ERSDLAGNNREALYL 107
DLA + +
Sbjct: 232 IAMDLAISKEMDTFH 246
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 78.7 bits (193), Expect = 1e-18
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+Y+T+ + KI R + G+ ++V+ LS+P LA+D L+W D+ +I
Sbjct: 444 GYMYFTNLQE--RSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRI 501
Query: 93 ERSDLAGNNREALYLNK 109
E SDL+G NR L +
Sbjct: 502 ESSDLSGANRIVLEDSN 518
Score = 72.9 bits (178), Expect = 1e-16
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+Y+TD I R M GS + ++E L P G+A+D+ + LYW D +I
Sbjct: 49 NRIYWTDISL----KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRI 104
Query: 93 ERSDLAGNNREAL 105
E S L G +R+ L
Sbjct: 105 EVSKLDGQHRQVL 117
Score = 68.3 bits (166), Expect = 5e-15
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE-- 90
R +Y+T I T + G V+++ + +P + ++ + +Y+T+
Sbjct: 401 RYIYWTCEAT----NVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSP 456
Query: 91 KIERSDLAGNNREALY 106
KIER+ L G RE L+
Sbjct: 457 KIERAALDGTEREVLF 472
Score = 59.8 bits (144), Expect = 5e-12
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
+ LY+ D G +I + + G ++V++ KDL P LA+D + +YWT+ + K
Sbjct: 92 KNLYWADTGT----NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK 147
Query: 92 IERSDLAGNNREAL 105
I+R+ + G+ R L
Sbjct: 148 IDRAAMDGSERTTL 161
Score = 58.7 bits (141), Expect = 1e-11
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+Y+T+WG KI R M GS + ++ ++ + +GL ID+ LYWTD I
Sbjct: 135 GFMYWTEWGG---KPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLI 190
Query: 93 ERSDLAGNNREALY 106
E S++ G NRE +
Sbjct: 191 ESSNMLGLNREVIA 204
Score = 58.3 bits (140), Expect = 2e-11
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDL------SQPSGLAIDFDDEMLYWTD 86
+ LY+ D + I + GS ++ + QP L+ID +YWT
Sbjct: 352 KQLYWIDSRQ----NMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTC 407
Query: 87 AVREKIERSDLAGNNREALY 106
I + L G + +
Sbjct: 408 EATNVINVTRLDGRSVGVVL 427
Score = 53.7 bits (128), Expect = 8e-10
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 43 FGTAGKILRTTMAGSLKKVIIE-KDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN 101
F I R ++ + V I + + S L D D +YWTD + I R+ + G+
Sbjct: 11 FSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA 70
Query: 102 REAL 105
E +
Sbjct: 71 LEHV 74
Score = 44.4 bits (104), Expect = 1e-06
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
L++ D +I + ++G+ + V+ + ++ QP GL + + LYW D ++ I
Sbjct: 489 GKLFWADSDL----RRIESSDLSGANRIVLEDSNILQPVGLTVFEN--WLYWIDKQQQMI 542
Query: 93 ERSDLAGNNR 102
E+ D+ G
Sbjct: 543 EKIDMTGREG 552
Score = 42.9 bits (100), Expect = 4e-06
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 25 HFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVII--EKDLSQPSGLAIDFDDEML 82
+ + T + F I R + II L + D D+ L
Sbjct: 295 YSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQL 354
Query: 83 YWTDAVREKIERSDLAGNNREALYLN 108
YW D+ + I ++ G+ + ++
Sbjct: 355 YWIDSRQNMIRKAQEDGSQGFTVVVS 380
Score = 34.0 bits (77), Expect = 0.006
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 11 THRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQP 70
+ R+ L+ + R LY+TD I + M G ++VI + DL P
Sbjct: 156 SERTTLVPNVGRANGLTIDYAKRRLYWTDLDT----NLIESSNMLGLNREVIAD-DLPHP 210
Query: 71 SGLAIDFDDEMLYWTDAVREKIERSDLAGNNR 102
GL + +YWTD R IER++
Sbjct: 211 FGLTQY--QDYIYWTDWSRRSIERANKTSGQN 240
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 72.8 bits (178), Expect = 8e-17
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 31 RLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE 90
+Y+TDWG T KI + + G ++ +++ P+G+ +D LYW D+
Sbjct: 130 VHGFMYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186
Query: 91 KIERSDLAGNNREALYLN 108
I D+ G NR+ + +
Sbjct: 187 SISSIDVNGGNRKTILED 204
Score = 63.9 bits (155), Expect = 1e-13
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA-VREK 91
+Y+TD G + G +K + ++ S+P + +D +YWTD K
Sbjct: 89 SNIYWTDSVL----GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 144
Query: 92 IERSDLAGNNREAL 105
I++ L G + +L
Sbjct: 145 IKKGGLNGVDIYSL 158
Score = 61.2 bits (148), Expect = 1e-12
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAG----SLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV 88
+Y++D + I T + S +I +D+ P GLA+D+ +YWTD+V
Sbjct: 42 NRIYWSDLSQ----RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV 97
Query: 89 REKIERSDLAGNNREALY 106
+ +D G R+ L+
Sbjct: 98 LGTVSVADTKGVKRKTLF 115
Score = 48.1 bits (114), Expect = 5e-08
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 43 FGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN 101
F ++ + T+ S +I +L L + +YW+D + I + L +
Sbjct: 6 FTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63
Score = 42.3 bits (99), Expect = 6e-06
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
LY+ D I + G +K I+E + ++ ++ ++WTD + E I
Sbjct: 176 GRLYWVDSKLH----SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 231
Query: 93 ERSDLA-GNNREAL 105
++ G++ L
Sbjct: 232 FSANRLTGSDVNLL 245
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 73.3 bits (179), Expect = 1e-16
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+Y+TDWG KI R + GS + V++ L P+GLA+D+D+ +YW DA +KI
Sbjct: 447 GYMYWTDWGE---IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKI 503
Query: 93 ERSDLAGNNREALYLNK 109
E + G R L +K
Sbjct: 504 EVMNTDGTGRRVLVEDK 520
Score = 67.5 bits (164), Expect = 1e-14
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGS-LKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREK 91
+Y++D I RT + + ++ L P GLA D+ E LYWTD+ +
Sbjct: 52 GLIYWSDVSE----EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNR 107
Query: 92 IERSDLAGNNREALY 106
IE S+L G+ R+ L+
Sbjct: 108 IEVSNLDGSLRKVLF 122
Score = 66.8 bits (162), Expect = 2e-14
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+Y+TDWG KI R M GS + +II ++ P+GL +D++++ LYW DA I
Sbjct: 139 GFMYWTDWG---EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 195
Query: 93 ERSDLAGNNRE 103
+S+L G NR+
Sbjct: 196 HKSNLDGTNRQ 206
Score = 65.6 bits (159), Expect = 5e-14
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+Y+TD I R+ + GS + ++ ++ P G+A+D+ LYWTD ++I
Sbjct: 361 GYIYWTDDEV----RAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRI 416
Query: 93 ERSDLAGNNREALYLN 108
E + L G R+ L
Sbjct: 417 EVTRLNGTMRKILISE 432
Score = 63.3 bits (153), Expect = 3e-13
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE-K 91
R LY+TD G +I T + G+++K++I +DL +P + +D +YWTD K
Sbjct: 404 RNLYWTDTGT----DRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPK 459
Query: 92 IERSDLAGNNREAL 105
IER+ L G++R L
Sbjct: 460 IERAALDGSDRVVL 473
Score = 62.5 bits (151), Expect = 6e-13
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA-VREK 91
LY+TD +I + + GSL+KV+ ++L QP +A+D +YWTD K
Sbjct: 96 EKLYWTDSET----NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK 151
Query: 92 IERSDLAGNNREAL 105
IER+ + G++R +
Sbjct: 152 IERAGMDGSSRFII 165
Score = 49.0 bits (116), Expect = 2e-08
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 43 FGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN 101
+ + G I+ L + + F ++YW+D E I+R++
Sbjct: 14 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE 73
Query: 102 R 102
Sbjct: 74 S 74
Score = 49.0 bits (116), Expect = 3e-08
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+Y+ D KI G+ ++V++E + G + D +YWTD R I
Sbjct: 491 GKIYWGDAKT----DKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDY--VYWTDWQRRSI 544
Query: 93 ERSDLAGNNREAL 105
ER RE +
Sbjct: 545 ERVHKRSAEREVI 557
Score = 41.3 bits (96), Expect = 2e-05
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 66 DLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
D+ + D + +YWTD I RS + G+ + +
Sbjct: 347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFV 386
Score = 35.2 bits (80), Expect = 0.002
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
LY+ D I ++ + G+ ++ +++ L P L + D +LYWTD I
Sbjct: 184 KLYWADAKL----NFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSIL 237
Query: 94 RSDLA-GNNREALYLN 108
+ G ++ +
Sbjct: 238 ACNKYTGEGLREIHSD 253
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 71.4 bits (174), Expect = 3e-16
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
T+Y+TDWG +I ++M GS +++I + L P+GL ID+ +YW DA I
Sbjct: 171 GTIYWTDWG---NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 227
Query: 93 ERSDLAGNNREALYLNK 109
ER++L G++R+A+
Sbjct: 228 ERANLDGSHRKAVISQG 244
Score = 68.4 bits (166), Expect = 4e-15
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
++++D +ILR + GS + ++ L P GLA+D+ + LYWTD+ +I
Sbjct: 85 ELVFWSDVTL----DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRI 140
Query: 93 ERSDLAGNNREALY 106
E ++L G +R+ L
Sbjct: 141 EVANLDGAHRKVLL 154
Score = 67.2 bits (163), Expect = 1e-14
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
LY+TD G +I + G+ +KV++ + L +P +A+ + +YWTD +
Sbjct: 128 DKLYWTDSGT----SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 183
Query: 92 IERSDLAGNNREALY 106
IE S + G+ R +
Sbjct: 184 IEASSMDGSGRRIIA 198
Score = 43.7 bits (102), Expect = 2e-06
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
R +Y+ D I R + GS +K +I + L P + + D LYWTD + I
Sbjct: 215 RRMYWVDAKH----HVIERANLDGSHRKAVISQGLPHPFAITVFED--SLYWTDWHTKSI 268
Query: 93 ERSDLA-GNNREAL 105
++ G N+E +
Sbjct: 269 NSANKFTGKNQEII 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 69.7 bits (170), Expect = 1e-15
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+Y+TDWG KI R M GS + +II ++ P+GL +D++++ LYW DA I
Sbjct: 134 GFMYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 190
Query: 93 ERSDLAGNNR 102
+S+L G NR
Sbjct: 191 HKSNLDGTNR 200
Score = 67.0 bits (163), Expect = 9e-15
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGS-LKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREK 91
+Y++D I RT + + ++ L P GLA D+ E LYWTD+ +
Sbjct: 47 GLIYWSDVSE----EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNR 102
Query: 92 IERSDLAGNNREALY 106
IE S+L G+ R+ L+
Sbjct: 103 IEVSNLDGSLRKVLF 117
Score = 58.2 bits (140), Expect = 1e-11
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA-VREK 91
LY+TD +I + + GSL+KV+ ++L QP +A+D +YWTD K
Sbjct: 91 EKLYWTDSET----NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK 146
Query: 92 IERSDLAGNNREAL 105
IER+ + G++R +
Sbjct: 147 IERAGMDGSSRFII 160
Score = 47.8 bits (113), Expect = 6e-08
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 43 FGTAGKILRTTMA-GSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNN 101
+ + G I+ L + + F ++YW+D E I+R++
Sbjct: 9 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE 68
Query: 102 R 102
Sbjct: 69 S 69
Score = 46.2 bits (109), Expect = 2e-07
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
LY+ D I ++ + G+ ++ +++ L P L + D +LYWTD I
Sbjct: 179 KLYWADAKL----NFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSIL 232
Query: 94 RSDLA-GNNREALY 106
+ G ++
Sbjct: 233 ACNKYTGEGLREIH 246
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 49.3 bits (117), Expect = 2e-08
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 7/74 (9%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+YY D R I+ + V+ E ++ + + + Y +
Sbjct: 196 TNVYYMDVNR---DNAIVHVNINNPNPVVLTEANIEHYNV----YGSLIFYQRGGDNPAL 248
Query: 93 ERSDLAGNNREALY 106
G + L
Sbjct: 249 CVVKNDGTGFKELA 262
Score = 42.0 bits (98), Expect = 7e-06
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE-K 91
R YY + G++ R A + + + + +P + DD +Y+ D R+
Sbjct: 157 RYFYYNNPKN----GQLYRYDTASQSEALFYDCNCYKP----VVLDDTNVYYMDVNRDNA 208
Query: 92 IERSDLAGNNREAL 105
I ++ N L
Sbjct: 209 IVHVNINNPNPVVL 222
Score = 37.0 bits (85), Expect = 5e-04
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
+YY + TA + R + G KK I + D Y+ + ++
Sbjct: 117 YIYYLHYDT-QTATSLYRIRIDGEEKKKIKN-----HYLFTCNTSDRYFYYNNPKNGQLY 170
Query: 94 RSDLAGNNREALY 106
R D A + Y
Sbjct: 171 RYDTASQSEALFY 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 41.9 bits (99), Expect = 9e-06
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
L++T+ I R T +G + + I S P G+ DD L++ + + KI
Sbjct: 153 ALWFTENQ----NNAIGRITESGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIG 207
Query: 94 RSDLAGNNRE 103
R +G E
Sbjct: 208 RITTSGEITE 217
Score = 40.8 bits (96), Expect = 2e-05
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
+++T+ +I R T G +++ + S PS + + D+ L++T+ I
Sbjct: 111 DIWFTEMN----GNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIG 165
Query: 94 RSDLAGNNRE 103
R +G+ E
Sbjct: 166 RITESGDITE 175
Score = 39.2 bits (92), Expect = 7e-05
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
L++ + KI R T +G + + I ++P + + L++T+ KI
Sbjct: 195 ALWFVEII----GNKIGRITTSGEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIG 249
Query: 94 RSDLAGNNRE 103
R E
Sbjct: 250 RLTSNNIIEE 259
Score = 39.2 bits (92), Expect = 7e-05
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
++ T A I + G + + + ++ L I D E +++T+ KI
Sbjct: 27 KVWITQHK----ANMISCINLDGKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIG 81
Query: 94 RSDLAGNNRE 103
R G +E
Sbjct: 82 RITKKGIIKE 91
Score = 38.8 bits (91), Expect = 9e-05
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
+++T+ A KI R T G +K+ + S P G+ + + +++T+ +I
Sbjct: 69 EVWFTENA----ANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIG 123
Query: 94 RSDLAGNNRE 103
R G RE
Sbjct: 124 RITDDGKIRE 133
Score = 35.0 bits (81), Expect = 0.002
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
L++T+WG A KI R T +++ I+ ++P G+ FD E +++ +KI
Sbjct: 237 DLWFTEWG----ANKIGRLTSNNIIEEYPIQIKSAEPHGIC--FDGETIWFAMEC-DKIG 289
Query: 94 RSDLAGNNRE 103
+ L +N E
Sbjct: 290 KLTLIKDNME 299
Score = 29.2 bits (66), Expect = 0.20
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 54 MAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNRE 103
M L+++ + + P G+ + + ++ T I +L G E
Sbjct: 1 MEFKLQELNLTNQDTGPYGITVSDKGK-VWITQHKANMISCINLDGKITE 49
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 40.0 bits (94), Expect = 3e-05
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
+++T +I + T G++ + + S P+ + + D L++T+ I
Sbjct: 116 DIWFTQLN----GDRIGKLTADGTIYEYDLPNKGSYPAFITLG-SDNALWFTENQNNSIG 170
Query: 94 RSDLAGNNRE 103
R G E
Sbjct: 171 RITNTGKLEE 180
Score = 39.2 bits (92), Expect = 7e-05
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
+++T A KI +G +K+ + ++ L + + +++T+ KI
Sbjct: 32 KVWFTQHK----ANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIG 86
Query: 94 RSDLAGNNRE 103
+ G E
Sbjct: 87 KLSKKGGFTE 96
Score = 38.4 bits (90), Expect = 1e-04
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
L++T+ I R T G L++ + + + P G+ D L++ + + KI
Sbjct: 158 ALWFTENQ----NNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIG 212
Query: 94 RSDLAGNNRE 103
R G E
Sbjct: 213 RITTTGEISE 222
Score = 36.9 bits (86), Expect = 4e-04
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
+++T+ G A KI + + G + + + S P G+ + + +++T ++I
Sbjct: 74 DIWFTENG----ANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIG 128
Query: 94 RSDLAGNNRE 103
+ G E
Sbjct: 129 KLTADGTIYE 138
Score = 36.5 bits (85), Expect = 7e-04
Identities = 10/53 (18%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD 86
+++T+WG A +I R T ++++ ++ + ++P G+ D +++
Sbjct: 242 EIWFTEWG----ANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGS-VWFAL 289
Score = 34.6 bits (80), Expect = 0.003
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
L++ + KI R T G + + I ++P + + E +++T+ +I
Sbjct: 200 ALWFVEIM----GNKIGRITTTGEISEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIG 254
Query: 94 RSDLAGN 100
R
Sbjct: 255 RITNDNT 261
Score = 26.5 bits (59), Expect = 1.8
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 53 TMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNRE 103
M L++ + S P G+ D + +++T KI D +G +E
Sbjct: 5 WMNFYLEEFNLSIPDSGPYGITSSEDGK-VWFTQHKANKISSLDQSGRIKE 54
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 31.8 bits (73), Expect = 0.028
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
+Y D G ++++ + V+ L+ P G+A+D +Y TD ++
Sbjct: 120 AVYVADRG----NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVV 174
Query: 94 RSDLAGN 100
+ + N
Sbjct: 175 KLEAESN 181
Score = 31.1 bits (71), Expect = 0.048
Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
T+Y T+ ++++ + V+ L+ P +A+D D +Y D +++
Sbjct: 204 TVYVTEHN----TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVV 258
Query: 94 RSDLAGN 100
+ +
Sbjct: 259 KLTSLEH 265
Score = 30.7 bits (70), Expect = 0.055
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
+Y T G G++++ + V+ L QP GLA+D +Y TD +
Sbjct: 36 NVYVTSEG---MYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVT 91
Query: 94 RSDLAGN 100
+ + N
Sbjct: 92 LAAGSNN 98
Score = 26.8 bits (60), Expect = 1.3
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 16/69 (23%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
+Y TD ++++ + + V+ D++ P G+A+D +Y T+
Sbjct: 162 NVYVTDTD----NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTE------- 209
Query: 94 RSDLAGNNR 102
N+
Sbjct: 210 ----HNTNQ 214
Score = 26.4 bits (59), Expect = 1.8
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 17/69 (24%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
T+Y TD+ +++ + + V+ L+ P GLA+D +Y D
Sbjct: 79 TVYVTDFN-----NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVAD------- 125
Query: 94 RSDLAGNNR 102
GNNR
Sbjct: 126 ----RGNNR 130
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 30.5 bits (68), Expect = 0.082
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVI-IEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
LY+ W AG++ R + +D + Y + I
Sbjct: 239 ELYFNSWN----AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294
Query: 93 ERSDLAGNNRE 103
RSD +
Sbjct: 295 LRSDYDWKTKR 305
Score = 29.7 bits (66), Expect = 0.15
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 27/83 (32%)
Query: 34 TLYYTDWG-----RFGTAGKILRTTMAGSLKK---------VIIEKDLSQPSGLAIDFDD 79
Y+ D G++ TT AG + E + P G+ D +
Sbjct: 353 DFYFCDRENHCIRILTPQGRV--TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEER 410
Query: 80 EMLYWTDAVREKIERSDLAGNNR 102
E + D N R
Sbjct: 411 ECFFIGD-----------RENRR 422
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 30.0 bits (67), Expect = 0.100
Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 36 YYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERS 95
G++++ + ++++ +L P G + D + + + +I +
Sbjct: 154 VQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKY 212
Query: 96 DLAGNN 101
L G
Sbjct: 213 WLEGPK 218
Score = 24.7 bits (53), Expect = 9.3
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 67 LSQPSGLAIDFDDEMLYWTDA 87
+ +D ++Y+TD
Sbjct: 125 FKWLYAVTVDQRTGIVYFTDV 145
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase,
organophosphate hydrolase, calcium bound, alternative
splicing, cytoplasm, phosphoprotein; 1.42A {Homo
sapiens} PDB: 3g4h_B
Length = 297
Score = 29.6 bits (67), Expect = 0.17
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 17/73 (23%)
Query: 40 WGRF--GT-------------AGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYW 84
GR+ GT G + +KK + +GL D ++ Y+
Sbjct: 108 AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--DQVDISNGLDWSLDHKIFYY 165
Query: 85 TDAVREKIERSDL 97
D++ ++ D
Sbjct: 166 IDSLSYSVDAFDY 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 28.9 bits (65), Expect = 0.23
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 35 LYYTD--WGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
Y+TD G + + II+ ++S +G+A+ D+++L+ T+ ++
Sbjct: 148 FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETTANRL 206
Query: 93 ERSDLAGN 100
R L +
Sbjct: 207 HRIALEDD 214
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 29.1 bits (64), Expect = 0.24
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 30/94 (31%)
Query: 34 TLYYTDWG-----RFGTAGKILRTTMAGSLKKVIIEKD---------------LSQPSGL 73
Y+ D + G + +T AG + SGL
Sbjct: 392 DFYFVDRLNFCVRKVTPEGIV--STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449
Query: 74 AIDFDDEMLYWTD----AVREKI---ERSDLAGN 100
D EM Y D +R I + ++AG+
Sbjct: 450 VYDDVKEMFYVHDQVGHTIR-TISMEQEENVAGD 482
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 28.8 bits (64), Expect = 0.28
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 25/96 (26%)
Query: 34 TLYYTDWG-----RFGTAGKILRTTMAGSLKK------VIIEKDLSQPSGLAIDFDDEML 82
Y +D + G+ GS + + E +QP+G+ +D D
Sbjct: 280 NFYMSDQNLSSVYKITPDGEC--EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-F 336
Query: 83 YWTD-----AVREKIERSD-----LAGNNREALYLN 108
Y D +R K++ D +AG A ++
Sbjct: 337 YIVDGFKGYCLR-KLDILDGYVSTVAGQVDVASQID 371
Score = 27.2 bits (60), Expect = 1.0
Identities = 5/35 (14%), Positives = 9/35 (25%), Gaps = 1/35 (2%)
Query: 66 DLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGN 100
P + D Y +D + + G
Sbjct: 266 TNPGPYLIYYFVDSN-FYMSDQNLSSVYKITPDGE 299
Score = 26.1 bits (57), Expect = 2.8
Identities = 3/34 (8%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 67 LSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGN 100
G+A ++ + ++ + N
Sbjct: 130 FKYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDN 162
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 28.5 bits (63), Expect = 0.40
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA 87
TLY+ + ++ + +E ++ GL ++ ++ +Y DA
Sbjct: 237 DTLYWIN----NDIWRM-PVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADA 286
Score = 28.1 bits (62), Expect = 0.58
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 35 LYYTDWGRFG------TAGKILR-TTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD 86
++ G + A + R +++K K PS + ++ + LYW +
Sbjct: 185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 28.1 bits (63), Expect = 0.44
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 46 AGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLA 98
+ R GS + + DL P+GLA D++ LY + + ++
Sbjct: 168 HHSVYRLPPDGSPLQRM--ADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEIT 218
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 28.1 bits (63), Expect = 0.49
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 46 AGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNR 102
+ R G+L I +D +P+GLA L +D R L
Sbjct: 152 GRWVFRLAPDGTLSAPI--RDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNARGE 205
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 28.2 bits (62), Expect = 0.53
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 62 IIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNR 102
++ + +G+ I D + +Y + + KI + N
Sbjct: 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT 255
>2d7t_H Anti polyhydroxybutyrate antibody FV, heavy chain; plastic, immune
system; 1.70A {Homo sapiens}
Length = 139
Score = 26.8 bits (60), Expect = 1.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 33 RTLYYTD-WGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSG 72
+ D WG+ GT L T + S +K+I ++DL+ +G
Sbjct: 98 TGWWGMDVWGQ-GT----LVTVSSASEQKLISKEDLNGSAG 133
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 27.3 bits (61), Expect = 1.1
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 13/68 (19%)
Query: 40 WGRF--GT--------AGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR 89
G GT AG I G + K+ D+S P+ + D Y+ D
Sbjct: 144 SGALWIGTMGRKAETGAGSIYHVA-KGKVTKLF--ADISIPNSICFSPDGTTGYFVDTKV 200
Query: 90 EKIERSDL 97
++ R L
Sbjct: 201 NRLMRVPL 208
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural
genomics, midwest center for structu genomics,
TOLB-like, Ca binding; 2.55A {Escherichia coli}
Length = 255
Score = 26.2 bits (57), Expect = 2.1
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 64 EKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALYLNK 109
+ L SG + L ++ L G + L K
Sbjct: 169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTK 214
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 2.6
Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 27/97 (27%)
Query: 4 TDKDLLKTHRSLLLQAIP-GRRHFMP------PIR-----LRTLY--YTDWGR--FGTAG 47
+ K S L +A+ G + LR LY Y +
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 48 KILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYW 84
+ L L + ++ + GL I L W
Sbjct: 193 ETLS-----ELIRTTLDAEKVFTQGLNI------LEW 218
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 25.7 bits (56), Expect = 3.7
Identities = 5/74 (6%), Positives = 17/74 (22%), Gaps = 6/74 (8%)
Query: 34 TLYYTDW-----GRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV 88
D + + + P+ + LY ++
Sbjct: 129 QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNS-ESVFPAANGLKRFGNFLYVSNTE 187
Query: 89 REKIERSDLAGNNR 102
+ + R + ++
Sbjct: 188 KMLLLRIPVDSTDK 201
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel,
rossmann fold, B12-dependent methyltransferase; HET:
B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D*
4djf_D*
Length = 323
Score = 25.4 bits (55), Expect = 4.8
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 64 EKDLSQPSGLAIDFDDEMLYWTDAVREKIE 93
E ++ + ++ D + W D +++
Sbjct: 47 EGEIVNRPVIGMEVQDIVPDWPDVLKDPFT 76
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 25.2 bits (55), Expect = 5.5
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 35 LYYTDWG-----RFGTAGKILRT-TMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV 88
+ TD + K + S++ + QP+ +A++ ++ V
Sbjct: 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVF----V 159
Query: 89 REKIERSDLAGNNR 102
SD N+R
Sbjct: 160 ------SDGYCNSR 167
Score = 25.2 bits (55), Expect = 5.6
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 17/75 (22%)
Query: 34 TLYYTDWG------RFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDA 87
++ +D +F +GK + S S P LA+ + L D
Sbjct: 156 AVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD- 214
Query: 88 VREKIERSDLAGNNR 102
N R
Sbjct: 215 ----------RENGR 219
Score = 25.2 bits (55), Expect = 6.0
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 67 LSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALYL 107
P GL+ID D + TD ++ + D L L
Sbjct: 90 FYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLIL 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 25.0 bits (55), Expect = 5.7
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 56 GSLKKVIIEKDLSQPSGLAIDFDDEMLY 83
G+L + Q + + D LY
Sbjct: 26 GALTLTQVVDVPGQVQPMVVSPDKRYLY 53
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 24.8 bits (55), Expect = 6.2
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEML 82
+ T+ +I G + L P G+ +D ++
Sbjct: 91 IIVTERSP---THQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRII 135
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding
nucleotide binding M binding, nucleus; HET: DNA TTD DTP;
3.34A {Homo sapiens}
Length = 517
Score = 25.0 bits (54), Expect = 6.7
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 2 VSTDKDLLKTHRSLLLQAIPGRRHFMPPIRL 32
VST +++ + LL I +RL
Sbjct: 467 VSTAEEIFAIAKELLKTEIDADFPHPLRLRL 497
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.406
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,759,096
Number of extensions: 99500
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 113
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)