RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy959
(109 letters)
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 49.1 bits (116), Expect = 9e-09
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
LY+TDW R KI + M G+ ++++ + +L P+GL D L W DA + E
Sbjct: 136 LYWTDWNR--DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193
Query: 95 SDLAGNNREALY 106
+ A R +
Sbjct: 194 LNPAQPGRRKVL 205
Score = 42.2 bits (98), Expect = 2e-06
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
L + D G + A ++ ++E L P + + LY+TD +
Sbjct: 181 LCWVDAGT----HRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233
Query: 95 SDLAGNNREALYL 107
DLA + +
Sbjct: 234 MDLAISKEMDTFH 246
Score = 41.8 bits (97), Expect = 3e-06
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 51 RTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNRE 103
R TM + K + GLA D D+++YWTD I R+ L G
Sbjct: 19 RNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT 71
Score = 39.1 bits (90), Expect = 3e-05
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+ +Y+TD I R ++ G II +DL P G+A+D ++WTD+ ++I
Sbjct: 48 KVVYWTDISE----PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRI 103
Query: 93 ERSDLAGNNREALY 106
E + + G R L+
Sbjct: 104 EVAKMDGTQRRVLF 117
Score = 35.2 bits (80), Expect = 5e-04
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE-- 90
RT+++TD +I M G+ ++V+ + L P G+ D LYWTD R+
Sbjct: 91 RTIFWTDSQL----DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNP 146
Query: 91 KIERSDLAGNNR 102
KIE S + G NR
Sbjct: 147 KIETSHMDGTNR 158
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 42.2 bits (98), Expect = 2e-06
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+Y++D + L S +I +D+ P GLA+D+ +YWTD+V +
Sbjct: 42 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 101
Query: 93 ERSDLAGNN 101
+D G
Sbjct: 102 SVADTKGVK 110
Score = 42.2 bits (98), Expect = 2e-06
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 31 RLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE 90
+Y+TDWG KI + + G ++ +++ P+G+ +D LYW D+
Sbjct: 130 VHGFMYWTDWGT---PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186
Query: 91 KIERSDLAGNNREALYLNK 109
I D+ G NR+ + ++
Sbjct: 187 SISSIDVNGGNRKTILEDE 205
Score = 41.1 bits (95), Expect = 6e-06
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
LY+ D I + G +K I+E + ++ ++ ++WTD + E I
Sbjct: 178 LYWVDSKLH----SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFS 233
Query: 95 SDLA-GNNREALYLN 108
++ G++ L N
Sbjct: 234 ANRLTGSDVNLLAEN 248
Score = 39.5 bits (91), Expect = 2e-05
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 43 FGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNR 102
F ++ + T+ S +I +L L + +YW+D + I + L +
Sbjct: 6 FTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64
Query: 103 E 103
Sbjct: 65 V 65
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 37.1 bits (84), Expect = 2e-04
Identities = 8/63 (12%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 40 WGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAG 99
+ ++++ + V+ L+ P +A+D D +Y D +++ +
Sbjct: 196 YVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLE 254
Query: 100 NNR 102
++
Sbjct: 255 HHH 257
Score = 32.1 bits (71), Expect = 0.007
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLY 83
+Y T G G++++ + V+ L QP GLA+D +
Sbjct: 26 NVYVTSEG---MYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYV 72
Score = 24.0 bits (50), Expect = 4.5
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 69 QPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALYLN 108
PSG+A+D + ++ + ++ + L N
Sbjct: 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN 54
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 279
Score = 34.2 bits (77), Expect = 0.002
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 20/71 (28%)
Query: 31 RLRTLYYTDWGRFGTA-GKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVR 89
R R +Y+ +G FG G+ ++PSG+A++ ++ + D
Sbjct: 3 RQRMIYHCKFGEFGVMEGQ------------------FTEPSGVAVNAQND-IIVADTNN 43
Query: 90 EKIERSDLAGN 100
+I+ D G
Sbjct: 44 HRIQIFDKEGR 54
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 33.1 bits (74), Expect = 0.004
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 34 TLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYW 84
L+ D G I + K + P+ + I D +
Sbjct: 52 QLFLLDVF----EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVC 98
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 340
Score = 30.8 bits (69), Expect = 0.020
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
Query: 21 PGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDE 80
P + Y W T + + +V+ E +G+ I D +
Sbjct: 160 PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGK 218
Query: 81 MLYWTDAVREKIERSDLAGNNR 102
+Y + + KI + N
Sbjct: 219 YVYIAELLAHKIHVYEKHANWT 240
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase
(phosphotriesterase, DFP) {Squid (Loligo vulgaris)
[TaxId: 6622]}
Length = 314
Score = 29.2 bits (64), Expect = 0.082
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
L +WG + I G K+ I +PS L + ++ T+ +
Sbjct: 237 NNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAV 292
Query: 93 ERSDL 97
+ +
Sbjct: 293 WKFEW 297
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 25.9 bits (56), Expect = 0.97
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 46 AGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+GK + + + ++EK + S DD Y T + K+
Sbjct: 38 SGK---SFTSIQIYNHLMEKYGGEKSIGYASIDD--FYLTHEDQLKLNE 81
>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM,
C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Length = 140
Score = 23.7 bits (50), Expect = 5.2
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 3/105 (2%)
Query: 4 TDKDLLKTHRSLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVII 63
DKD L+ L+ + R +R +TD+ + L A + ++
Sbjct: 18 FDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLV 77
Query: 64 EKDLSQPSGLAIDFDDEML---YWTDAVREKIERSDLAGNNREAL 105
+ A+ + +A K+ REAL
Sbjct: 78 SNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREAL 122
>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2
isoform [TaxId: 9606]}
Length = 123
Score = 23.1 bits (48), Expect = 9.3
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 73 LAIDFDDEMLYWTDAVREKIERSDLAG 99
+ EM W V I +G
Sbjct: 97 FQAKDEAEMSSWLRVVNAAIASGPSSG 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.406
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 425,344
Number of extensions: 18539
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 22
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)