BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9590
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 171 bits (433), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
Query: 128 IVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQY--LAEAGFTARGKIGC 185
I++ R+ LP++ + E +K +NQI++ +GETGSGKTTQI Q+ E ++ C
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145
Query: 186 TQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLD 245
TQPRRVAAMSVA+RVAEE +LG+EVGY+IRFE+ TS++T++KYMTDGMLLRE + D D
Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205
Query: 246 LNNYSVIMLDEAHERTIHTDVLF 268
L+ YS I+LDEAHERT+ TD+L
Sbjct: 206 LSRYSCIILDEAHERTLATDILM 228
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 17/115 (14%)
Query: 1 MVKGQEEIDTAC-EILYE-----RMKSLGPDVPELIILPVYSALPSEMQTRIFEAAP--- 51
+ G++EI+ A +I E R + GP L + P+Y +LP Q RIFE AP
Sbjct: 309 FLTGEDEIEDAVRKISLEGDQLVREEGCGP----LSVYPLYGSLPPHQQQRIFEPAPESH 364
Query: 52 ---PGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQ 103
PG RKVVI+TNIAETSLTIDGI YVVDPGF KQKVYN + ++SL+V+PIS+
Sbjct: 365 NGRPG-RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISK 418
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 43/48 (89%)
Query: 299 RVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQ 346
+VVI+TNIAETSLTIDGI YVVDPGF KQKVYN + ++SL+V+PIS+
Sbjct: 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISK 418
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 171 bits (433), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
Query: 128 IVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQY--LAEAGFTARGKIGC 185
I++ R+ LP++ + E +K +NQI++ +GETGSGKTTQI Q+ E ++ C
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145
Query: 186 TQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLD 245
TQPRRVAAMSVA+RVAEE +LG+EVGY+IRFE+ TS++T++KYMTDGMLLRE + D D
Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205
Query: 246 LNNYSVIMLDEAHERTIHTDVLF 268
L+ YS I+LDEAHERT+ TD+L
Sbjct: 206 LSRYSCIILDEAHERTLATDILM 228
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 17/115 (14%)
Query: 1 MVKGQEEIDTAC-EILYE-----RMKSLGPDVPELIILPVYSALPSEMQTRIFEAAP--- 51
+ G++EI+ A +I E R + GP L + P+Y +LP Q RIFE AP
Sbjct: 309 FLTGEDEIEDAVRKISLEGDQLVREEGCGP----LSVYPLYGSLPPHQQQRIFEPAPESH 364
Query: 52 ---PGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQ 103
PG RKVVI+TNIAETSLTIDGI YVVDPGF KQKVYN + ++SL+V+PIS+
Sbjct: 365 NGRPG-RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISK 418
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 43/48 (89%)
Query: 299 RVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQ 346
+VVI+TNIAETSLTIDGI YVVDPGF KQKVYN + ++SL+V+PIS+
Sbjct: 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISK 418
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 91/147 (61%), Gaps = 7/147 (4%)
Query: 127 TIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGK 182
I+++R+ LP+ K + E+++A+S N ++I+ G TG GKTTQ+ Q++ + A
Sbjct: 52 AILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECN 111
Query: 183 IGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFED-CTSSETLIKYMTDGMLLRECL 241
I TQPRR++A+SVA+RVA E G G+ GY++RFE I + T G+LLR+
Sbjct: 112 IVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRK-- 169
Query: 242 VDLDLNNYSVIMLDEAHERTIHTDVLF 268
++ + S +++DE HER I+TD L
Sbjct: 170 LEAGIRGISHVIVDEIHERDINTDFLL 196
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 65/172 (37%), Gaps = 41/172 (23%)
Query: 16 YERMKSLGPDVPELI------ILPVYSA-LPSEMQTRIFEAAPPGSRKVVIATNIAETSL 68
YE + SLG + PV SA LP M RI PP I+ I + S
Sbjct: 67 YEHLISLGTATARFVDQDISDSRPVLSAILP--MGERIQIVRPPACEHGTISVTIRKPSF 124
Query: 69 TIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKKSSFGKKTNLTI 128
T + GF K SK+ +TP Q+L K+ G SF
Sbjct: 125 TRRTLEDYAQQGFFKHVRPMSKS------LTPFEQELLALKE---AGDYMSF-------- 167
Query: 129 VEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTAR 180
L +AV ++++V GETGSGKTT + + E F R
Sbjct: 168 ---------------LRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQR 204
>pdb|3RHT|A Chain A, Crystal Structure Of Type 1 Glutamine Amidotransferase
(Gatase1)-Like Protein From Planctomyces Limnophilus
pdb|3RHT|B Chain B, Crystal Structure Of Type 1 Glutamine Amidotransferase
(Gatase1)-Like Protein From Planctomyces Limnophilus
pdb|3RHT|C Chain C, Crystal Structure Of Type 1 Glutamine Amidotransferase
(Gatase1)-Like Protein From Planctomyces Limnophilus
pdb|3RHT|D Chain D, Crystal Structure Of Type 1 Glutamine Amidotransferase
(Gatase1)-Like Protein From Planctomyces Limnophilus
Length = 259
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 97 VVTPISQDLPEWKKH--VIGGKKSSFGKKTNLTIVEQRQSLPIYKLKH-ELIKAVSDNQI 153
V PI Q+LP W+ IGG K T++ R P + L+H + +D+
Sbjct: 134 VSHPILQNLP-WEDRPPTIGGLNRIAAKAKAQTLLXARVWRPTFSLEHGKTTWEHADHHP 192
Query: 154 LIVIGETGSGKTTQITQYLA 173
L+V+GE G+G+ +A
Sbjct: 193 LLVVGEAGTGRVAAFASDVA 212
>pdb|1EFD|N Chain N, Periplasmic Ferric Siderophore Binding Protein Fhud
Complexed With Gallichrome
Length = 266
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 260 RTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATNI-AETSLTIDGIFY 318
R + L DP + F N + + ++Y PNAW+ TN T+++ID +
Sbjct: 145 RPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGE-----TNFWGSTAVSIDRLAA 199
Query: 319 VVDPGFVKQKVYNSKTGMDSLVVTPISQ 346
D + NSK MD+L+ TP+ Q
Sbjct: 200 YKDVDVLCFDHDNSKD-MDALMATPLWQ 226
>pdb|1K7S|N Chain N, Fhud Complexed With Albomycin-Delta 2
Length = 265
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 260 RTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATNI-AETSLTIDGIFY 318
R + L DP + F N + + ++Y PNAW+ TN T+++ID +
Sbjct: 144 RPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGE-----TNFWGSTAVSIDRLAA 198
Query: 319 VVDPGFVKQKVYNSKTGMDSLVVTPISQ 346
D + NSK MD+L+ TP+ Q
Sbjct: 199 YKDVDVLCFDHDNSKD-MDALMATPLWQ 225
>pdb|1ESZ|A Chain A, Structure Of The Periplasmic Ferric Siderophore Binding
Protein Fhud Complexed With Coprogen
pdb|1K2V|N Chain N, E. Coli Periplasmic Protein Fhud Complexed With Desferal
Length = 266
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 260 RTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATNI-AETSLTIDGIFY 318
R + L DP + F N + + ++Y PNAW+ TN T+++ID +
Sbjct: 145 RPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGE-----TNFWGSTAVSIDRLAA 199
Query: 319 VVDPGFVKQKVYNSKTGMDSLVVTPISQ 346
D + NSK MD+L+ TP+ Q
Sbjct: 200 YKDVDVLCFDHDNSKD-MDALMATPLWQ 226
>pdb|2V8O|A Chain A, Structure Of The Murray Valley Encephalitis Virus Rna
Helicase To 1.9a Resolution
Length = 444
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 152 QILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQE 211
Q+ ++ G+GKT +I + + R + P RV A +A+ + G
Sbjct: 13 QLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALR-------GLP 65
Query: 212 VGY-TIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258
V Y T + S ++ M L + L + NY++ ++DEAH
Sbjct: 66 VRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAH 113
>pdb|1UAA|A Chain A, E. Coli Rep HelicaseDNA COMPLEX
pdb|1UAA|B Chain B, E. Coli Rep HelicaseDNA COMPLEX
Length = 673
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 155 IVIGETGSGKTTQITQYLAEAGFTARGKIGCT-QPRRVAAMSVAKRVAEEFGCRLGQEVG 213
+V+ GSGKT IT +A GC Q R +AA++ + A E R+GQ +G
Sbjct: 19 LVLAGAGSGKTRVITNKIAHL------IRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72
>pdb|2WV9|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Murray
Valley Encephalitis Virus
Length = 673
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 152 QILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQE 211
Q+ ++ G+GKT +I + + R + P RV A +A+ + G
Sbjct: 242 QLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALR-------GLP 294
Query: 212 VGY-TIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258
V Y T + S ++ M L + L + NY++ ++DEAH
Sbjct: 295 VRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAH 342
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 51 PPGSRKVVIATNIAE-TSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWK 109
PP KV ++AE T L + + + + +Y + +G+ +V+ P Q LP +
Sbjct: 79 PPKFSKV---EDMAELTCLNEASVLHNLRERYFSGLIY-TYSGLFCVVINPYKQ-LPIYS 133
Query: 110 KHVIGGKKSSFGKKTNLTIVEQRQSLP--IYKLKHELIKAV---SDNQILIVIGETGSGK 164
+ +I K GKK R +P IY + +++ ++Q ++ GE+G+GK
Sbjct: 134 EKIIDMYK---GKK--------RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGK 182
Query: 165 ---TTQITQYLAEAGFTARGK 182
T ++ QYLA + +GK
Sbjct: 183 TENTKKVIQYLAVVASSHKGK 203
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 51 PPGSRKVVIATNIAE-TSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWK 109
PP KV ++AE T L + + + + +Y + +G+ +V+ P Q LP +
Sbjct: 79 PPKFSKV---EDMAELTCLNEASVLHNLRERYFSGLIY-TYSGLFCVVINPYKQ-LPIYS 133
Query: 110 KHVIGGKKSSFGKKTNLTIVEQRQSLP--IYKLKHELIKAV---SDNQILIVIGETGSGK 164
+ +I K GKK R +P IY + +++ ++Q ++ GE+G+GK
Sbjct: 134 EKIIDMYK---GKK--------RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGK 182
Query: 165 ---TTQITQYLAEAGFTARGK 182
T ++ QYLA + +GK
Sbjct: 183 TENTKKVIQYLAVVASSHKGK 203
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 51 PPGSRKVVIATNIAE-TSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWK 109
PP KV ++AE T L + + + + +Y + +G+ +V+ P Q LP +
Sbjct: 79 PPKFSKV---EDMAELTCLNEASVLHNLRERYFSGLIY-TYSGLFCVVINPYKQ-LPIYS 133
Query: 110 KHVIGGKKSSFGKKTNLTIVEQRQSLP--IYKLKHELIKAV---SDNQILIVIGETGSGK 164
+ +I K GKK R +P IY + +++ ++Q ++ GE+G+GK
Sbjct: 134 EKIIDMYK---GKK--------RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGK 182
Query: 165 ---TTQITQYLAEAGFTARGK 182
T ++ QYLA + +GK
Sbjct: 183 TENTKKVIQYLAVVASSHKGK 203
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 51 PPGSRKVVIATNIAE-TSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWK 109
PP KV ++AE T L + + + + +Y + +G+ +V+ P Q LP +
Sbjct: 79 PPKFSKV---EDMAELTCLNEASVLHNLRERYFSGLIY-TYSGLFCVVINPYKQ-LPIYS 133
Query: 110 KHVIGGKKSSFGKKTNLTIVEQRQSLP--IYKLKHELIKAV---SDNQILIVIGETGSGK 164
+ +I K GKK R +P IY + +++ ++Q ++ GE+G+GK
Sbjct: 134 EKIIDMYK---GKK--------RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGK 182
Query: 165 ---TTQITQYLAEAGFTARGK 182
T ++ QYLA + +GK
Sbjct: 183 TENTKKVIQYLAVVASSHKGK 203
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 51 PPGSRKVVIATNIAE-TSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWK 109
PP KV ++AE T L + + + + +Y + +G+ +V+ P Q LP +
Sbjct: 79 PPKFSKV---EDMAELTCLNEASVLHNLRERYFSGLIY-TYSGLFCVVINPYKQ-LPIYS 133
Query: 110 KHVIGGKKSSFGKKTNLTIVEQRQSLP--IYKLKHELIKAV---SDNQILIVIGETGSGK 164
+ +I K GKK R +P IY + +++ ++Q ++ GE+G+GK
Sbjct: 134 EKIIDMYK---GKK--------RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGK 182
Query: 165 ---TTQITQYLAEAGFTARGK 182
T ++ QYLA + +GK
Sbjct: 183 TENTKKVIQYLAVVASSHKGK 203
>pdb|2QEQ|A Chain A, Crystal Structure Of Kunjin Virus Ns3 Helicase
pdb|2QEQ|B Chain B, Crystal Structure Of Kunjin Virus Ns3 Helicase
Length = 434
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 16/112 (14%)
Query: 152 QILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQE 211
QI ++ G+GKT +I + + R + P RV A +A+ +
Sbjct: 3 QITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR---------- 52
Query: 212 VGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258
G IR++ + ++ M L + + NY++ ++DEAH
Sbjct: 53 -GLPIRYQTSAVAREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAH 103
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 51 PPGSRKVVIATNIAE-TSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWK 109
PP KV ++AE T L + + + + +Y + +G+ +V+ P Q LP +
Sbjct: 79 PPKFSKV---EDMAELTCLNEASVLHNLRERYFSGLIY-TYSGLFCVVINPYKQ-LPIYS 133
Query: 110 KHVIGGKKSSFGKKTNLTIVEQRQSLP--IYKLKHELIKAV---SDNQILIVIGETGSGK 164
+ +I K GKK R +P IY + +++ ++Q ++ GE+G+GK
Sbjct: 134 EKIIDMYK---GKK--------RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGK 182
Query: 165 ---TTQITQYLAEAGFTARGK 182
T ++ QYLA + +GK
Sbjct: 183 TENTKKVIQYLAVVASSHKGK 203
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARG-KIGCTQPRRVAAMSVAKR 199
K ++ A+S ++ I+ G G+GKTT + + + +A +G K+ C P +A ++ +R
Sbjct: 195 KEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA--VKQGLKVLCCAPSNIAVDNLVER 252
Query: 200 VA 201
+A
Sbjct: 253 LA 254
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARG-KIGCTQPRRVAAMSVAKR 199
K ++ A+S ++ I+ G G+GKTT + + + +A +G K+ C P +A ++ +R
Sbjct: 195 KEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA--VKQGLKVLCCAPSNIAVDNLVER 252
Query: 200 VA 201
+A
Sbjct: 253 LA 254
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 149 SDNQILIVIGETGSGKTTQI 168
SD++IL+++GE G+GKTT I
Sbjct: 376 SDSEILVMMGENGTGKTTLI 395
>pdb|2V6J|A Chain A, Kokobera Virus Helicase: Mutant Met47thr
Length = 431
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 161 GSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGY-TIRFE 219
G+GKT ++ L R + P RV A +E + G+ + Y T +
Sbjct: 12 GAGKTRRVLPQLVREAVKKRLRTVILAPTRVVA-------SETYEALRGEPIRYMTPAVQ 64
Query: 220 DCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258
+ ++ +M + L + + NY++ ++DEAH
Sbjct: 65 SERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAH 103
>pdb|2WHX|A Chain A, A Second Conformation Of The Ns3 Protease-Helicase From
Dengue Virus
Length = 618
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 21/134 (15%)
Query: 131 QRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRR 190
+R P Y++ ++ + ++ I+ G+GKT +I + R + P R
Sbjct: 169 ERIGEPDYEVDEDIFRK---KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTR 225
Query: 191 VAAMSVAKRVAEEFGCRLGQEVGYTIRFE------DCTSSETLIKYMTDGMLLRECLVDL 244
V A + + + G IR++ D T E ++ M L
Sbjct: 226 VVAAEMEEALR-----------GLPIRYQTPAVKSDHTGRE-IVDLMCHATFTTRLLSST 273
Query: 245 DLNNYSVIMLDEAH 258
+ NY++I++DEAH
Sbjct: 274 RVPNYNLIVMDEAH 287
>pdb|2VBC|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Dengue
Virus
Length = 618
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 21/134 (15%)
Query: 131 QRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRR 190
+R P Y++ ++ + ++ I+ G+GKT +I + R + P R
Sbjct: 169 ERIGEPDYEVDEDIFRK---KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTR 225
Query: 191 VAAMSVAKRVAEEFGCRLGQEVGYTIRFE------DCTSSETLIKYMTDGMLLRECLVDL 244
V A + + + G IR++ D T E ++ M L
Sbjct: 226 VVAAEMEEALR-----------GLPIRYQTPAVKSDHTGRE-IVDLMCHATFTTRLLSST 273
Query: 245 DLNNYSVIMLDEAH 258
+ NY++I++DEAH
Sbjct: 274 RVPNYNLIVMDEAH 287
>pdb|2JLS|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Adp
Length = 451
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 21/129 (16%)
Query: 136 PIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS 195
P Y++ ++ + ++ I+ G+GKT +I + R + P RV A
Sbjct: 7 PDYEVDEDIFRK---KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAE 63
Query: 196 VAKRVAEEFGCRLGQEVGYTIRFE------DCTSSETLIKYMTDGMLLRECLVDLDLNNY 249
+ + + G IR++ D T E ++ M L + NY
Sbjct: 64 MEEALR-----------GLPIRYQTPAVKSDHTGRE-IVDLMCHATFTTRLLSSTRVPNY 111
Query: 250 SVIMLDEAH 258
++I++DEAH
Sbjct: 112 NLIVMDEAH 120
>pdb|2JLR|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Amppnp
Length = 451
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 21/129 (16%)
Query: 136 PIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS 195
P Y++ ++ + ++ I+ G+GKT +I + R + P RV A
Sbjct: 7 PDYEVDEDIFRK---KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAE 63
Query: 196 VAKRVAEEFGCRLGQEVGYTIRFE------DCTSSETLIKYMTDGMLLRECLVDLDLNNY 249
+ + + G IR++ D T E ++ M L + NY
Sbjct: 64 MEEALR-----------GLPIRYQTPAVKSDHTGRE-IVDLMCHATFTTRLLSSTRVPNY 111
Query: 250 SVIMLDEAH 258
++I++DEAH
Sbjct: 112 NLIVMDEAH 120
>pdb|2JLU|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna
pdb|2JLU|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna
pdb|2JLV|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And
Amppnp
pdb|2JLV|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And
Amppnp
pdb|2JLW|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna2
pdb|2JLW|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna2
pdb|2JLX|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp-
Vanadate
pdb|2JLX|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp-
Vanadate
pdb|2JLZ|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp
pdb|2JLZ|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp
Length = 451
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 21/129 (16%)
Query: 136 PIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS 195
P Y++ ++ + ++ I+ G+GKT +I + R + P RV A
Sbjct: 7 PDYEVDEDIFRK---KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAE 63
Query: 196 VAKRVAEEFGCRLGQEVGYTIRFE------DCTSSETLIKYMTDGMLLRECLVDLDLNNY 249
+ + + G IR++ D T E ++ M L + NY
Sbjct: 64 MEEALR-----------GLPIRYQTPAVKSDHTGRE-IVDLMCHATFTTRLLSSTRVPNY 111
Query: 250 SVIMLDEAH 258
++I++DEAH
Sbjct: 112 NLIVMDEAH 120
>pdb|2WZQ|A Chain A, Insertion Mutant E173gp174 Of The Ns3 Protease-Helicase
From Dengue Virus
Length = 619
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 21/139 (15%)
Query: 126 LTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185
+T E+ P Y++ ++ + ++ I+ G+GKT +I + R +
Sbjct: 165 ITQAERIGEGPDYEVDEDIFRK---KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLI 221
Query: 186 TQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFE------DCTSSETLIKYMTDGMLLRE 239
P RV A + + + G IR++ D T E ++ M
Sbjct: 222 LAPTRVVAAEMEEALR-----------GLPIRYQTPAVKSDHTGRE-IVDLMCHATFTTR 269
Query: 240 CLVDLDLNNYSVIMLDEAH 258
L + NY++I++DEAH
Sbjct: 270 LLSSTRVPNYNLIVMDEAH 288
>pdb|2V6I|A Chain A, Kokobera Virus Helicase
Length = 431
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 161 GSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGY-TIRFE 219
G+GKT ++ L R + P RV A +E + G+ + Y T +
Sbjct: 12 GAGKTRRVLPQLVREAVKKRLRTVILAPTRVVA-------SEMYEALRGEPIRYMTPAVQ 64
Query: 220 DCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258
+ ++ +M + L + + NY++ ++DEAH
Sbjct: 65 SERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAH 103
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 151 NQILIVIGETGSGKTTQITQYLAEAGFTARGKIG--CTQPRRVAAMSVAKRVAEEFGCRL 208
++ +++ G TG+GKTT + + A + KI T R+AA+ K AE L
Sbjct: 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL 164
Query: 209 GQEVGYT 215
EV YT
Sbjct: 165 --EVCYT 169
>pdb|2Z83|A Chain A, Crystal Structure Of Catalytic Domain Of Japanese
Encephalitis Virus Ns3 HelicaseNUCLEOSIDE TRIPHOSPHATASE
At A Resolution 1.8
Length = 459
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 152 QILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQE 211
Q+ ++ GSGKT +I + + R + P RV A +A+ +
Sbjct: 22 QMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR---------- 71
Query: 212 VGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258
G +R++ ++ M L + + NY++ ++DEAH
Sbjct: 72 -GLPVRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAH 122
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 171 NQSLLITGESGAGKTENTKKVIQYLA 196
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 171 NQSLLITGESGAGKTENTKKVIQYLA 196
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 183 NQSLLITGESGAGKTENTKKVIQYLA 208
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 171 NQSLLITGESGAGKTENTKKVIQYLA 196
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 183 NQSLLITGESGAGKTENTKKVIQYLA 208
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 171 NQSLLITGESGAGKTENTKKVIQYLA 196
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 183 NQSLLITGESGAGKTENTKKVIQYLA 208
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 183 NQSLLITGESGAGKTENTKKVIQYLA 208
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLA 197
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 171 NQSLLITGESGAGKTENTKKVIQYLA 196
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 151 NQILIVIGETGSGK---TTQITQYLA 173
NQ L++ GE+G+GK T ++ QYLA
Sbjct: 171 NQSLLITGESGAGKTENTKKVIQYLA 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,143,365
Number of Sequences: 62578
Number of extensions: 408703
Number of successful extensions: 1485
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1457
Number of HSP's gapped (non-prelim): 69
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)