Query psy9590
Match_columns 350
No_of_seqs 446 out of 3781
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 23:34:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922|consensus 100.0 9.7E-57 2.1E-61 440.8 15.9 243 106-349 22-368 (674)
2 KOG0923|consensus 100.0 8.7E-54 1.9E-58 416.6 12.9 224 126-349 255-584 (902)
3 KOG0924|consensus 100.0 3.3E-51 7E-56 399.3 15.6 223 127-349 347-675 (1042)
4 COG1643 HrpA HrpA-like helicas 100.0 8.3E-48 1.8E-52 396.5 14.8 224 126-349 40-365 (845)
5 KOG0925|consensus 100.0 4.5E-48 9.8E-53 366.1 9.0 225 125-349 36-365 (699)
6 KOG0926|consensus 100.0 4.7E-43 1E-47 347.0 12.4 145 126-271 246-395 (1172)
7 KOG0920|consensus 100.0 2.6E-42 5.7E-47 354.8 9.1 320 28-349 23-522 (924)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.8E-37 8.3E-42 328.8 13.0 221 129-349 60-382 (1283)
9 PRK11131 ATP-dependent RNA hel 100.0 4.5E-36 9.8E-41 319.7 15.4 221 129-349 67-389 (1294)
10 KOG0923|consensus 100.0 1.7E-35 3.7E-40 289.0 11.9 168 1-175 479-662 (902)
11 KOG0922|consensus 100.0 2.2E-35 4.7E-40 290.4 9.4 123 1-126 264-386 (674)
12 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-32 2.3E-37 288.0 13.6 214 135-349 1-314 (819)
13 PRK11664 ATP-dependent RNA hel 100.0 4.5E-32 9.7E-37 283.7 15.8 215 134-349 3-317 (812)
14 COG1643 HrpA HrpA-like helicas 100.0 1E-31 2.2E-36 277.6 8.2 119 1-126 265-383 (845)
15 KOG0924|consensus 100.0 3.2E-31 7E-36 259.6 9.8 116 1-116 569-685 (1042)
16 KOG0925|consensus 100.0 2.6E-29 5.6E-34 238.8 8.0 119 1-125 259-382 (699)
17 KOG0920|consensus 99.9 5.9E-28 1.3E-32 249.1 6.7 115 1-117 419-533 (924)
18 COG1116 TauB ABC-type nitrate/ 99.9 6.8E-27 1.5E-31 208.9 5.9 168 136-323 14-207 (248)
19 COG4555 NatA ABC-type Na+ tran 99.9 1.2E-26 2.7E-31 199.7 6.1 168 137-326 14-212 (245)
20 COG3842 PotA ABC-type spermidi 99.9 3.1E-26 6.6E-31 216.7 2.8 174 133-328 13-218 (352)
21 COG1118 CysA ABC-type sulfate/ 99.9 2.7E-25 5.9E-30 202.6 6.2 174 132-327 9-218 (345)
22 COG1126 GlnQ ABC-type polar am 99.9 4.7E-25 1E-29 192.3 7.3 174 133-329 10-218 (240)
23 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 4.9E-25 1.1E-29 199.3 5.9 164 140-325 19-217 (254)
24 KOG0926|consensus 99.9 6.3E-25 1.4E-29 218.8 5.5 100 25-126 601-700 (1172)
25 COG1131 CcmA ABC-type multidru 99.9 2.3E-24 4.9E-29 202.4 8.6 168 139-328 19-218 (293)
26 COG1125 OpuBA ABC-type proline 99.9 9.4E-25 2E-29 194.3 5.4 169 139-327 15-216 (309)
27 COG3839 MalK ABC-type sugar tr 99.9 1.5E-24 3.3E-29 204.2 6.0 167 140-328 18-215 (338)
28 COG1120 FepC ABC-type cobalami 99.9 2.3E-24 4.9E-29 195.9 5.6 165 140-326 17-218 (258)
29 COG1135 AbcC ABC-type metal io 99.9 2.5E-24 5.4E-29 196.7 5.6 167 139-328 20-223 (339)
30 COG1127 Ttg2A ABC-type transpo 99.9 9.4E-24 2E-28 186.8 7.5 163 139-326 22-225 (263)
31 TIGR01970 DEAH_box_HrpB ATP-de 99.9 1.2E-23 2.5E-28 220.3 6.8 117 1-125 215-331 (819)
32 COG4152 ABC-type uncharacteriz 99.9 4.5E-24 9.7E-29 188.9 2.1 176 132-326 9-209 (300)
33 PRK13537 nodulation ABC transp 99.9 4.6E-23 1E-27 194.9 9.2 166 140-327 22-218 (306)
34 COG2884 FtsE Predicted ATPase 99.9 4.9E-23 1.1E-27 176.0 7.5 166 139-326 16-216 (223)
35 PRK11650 ugpC glycerol-3-phosp 99.9 4.9E-23 1.1E-27 198.3 7.9 166 141-328 20-216 (356)
36 COG1136 SalX ABC-type antimicr 99.9 7E-23 1.5E-27 182.7 7.8 163 139-325 19-220 (226)
37 PRK11432 fbpC ferric transport 99.9 5.5E-23 1.2E-27 197.5 7.5 166 141-328 22-218 (351)
38 TIGR02314 ABC_MetN D-methionin 99.9 1E-22 2.2E-27 194.8 8.4 167 140-328 20-222 (343)
39 PRK13536 nodulation factor exp 99.9 9.8E-23 2.1E-27 195.1 8.2 165 140-326 56-251 (340)
40 TIGR01188 drrA daunorubicin re 99.9 9.4E-23 2E-27 192.6 7.9 165 141-327 9-204 (302)
41 TIGR03265 PhnT2 putative 2-ami 99.9 9.2E-23 2E-27 196.2 7.9 166 141-328 20-216 (353)
42 PRK09452 potA putrescine/sperm 99.9 1.1E-22 2.5E-27 196.7 7.7 166 141-328 30-226 (375)
43 PRK11664 ATP-dependent RNA hel 99.9 1E-22 2.3E-27 213.4 7.8 118 1-126 218-335 (812)
44 TIGR03258 PhnT 2-aminoethylpho 99.9 6.6E-23 1.4E-27 197.6 5.2 167 140-328 20-220 (362)
45 cd03226 ABC_cobalt_CbiO_domain 99.9 2.1E-22 4.5E-27 179.7 8.0 164 140-325 15-204 (205)
46 cd03259 ABC_Carb_Solutes_like 99.9 1.9E-22 4.2E-27 181.0 7.8 165 140-326 15-210 (213)
47 TIGR00960 3a0501s02 Type II (G 99.9 1.3E-22 2.9E-27 182.4 6.6 163 141-325 19-216 (216)
48 PRK11607 potG putrescine trans 99.9 1.6E-22 3.5E-27 196.0 7.4 166 141-328 35-231 (377)
49 COG4586 ABC-type uncharacteriz 99.9 1.6E-22 3.5E-27 181.7 6.7 162 139-325 38-235 (325)
50 COG0410 LivF ABC-type branched 99.9 1.4E-22 3E-27 178.8 6.1 165 139-326 17-216 (237)
51 COG1124 DppF ABC-type dipeptid 99.9 1.5E-22 3.3E-27 179.7 6.4 169 139-329 21-224 (252)
52 cd03293 ABC_NrtD_SsuB_transpor 99.9 2.4E-22 5.2E-27 181.3 7.8 165 141-327 20-214 (220)
53 cd03261 ABC_Org_Solvent_Resist 99.9 3.2E-22 6.8E-27 182.3 8.6 164 141-326 16-216 (235)
54 PRK11000 maltose/maltodextrin 99.9 2.1E-22 4.5E-27 195.0 7.6 166 141-328 19-215 (369)
55 COG4175 ProV ABC-type proline/ 99.9 2.5E-22 5.5E-27 183.7 7.5 165 141-328 44-246 (386)
56 TIGR01186 proV glycine betaine 99.9 2.1E-22 4.5E-27 193.9 7.3 165 141-327 9-210 (363)
57 PRK10851 sulfate/thiosulfate t 99.9 2.7E-22 5.9E-27 192.9 7.7 167 140-328 17-218 (353)
58 PRK11247 ssuB aliphatic sulfon 99.9 3.2E-22 6.9E-27 184.7 7.6 166 140-327 27-214 (257)
59 TIGR02673 FtsE cell division A 99.9 2.8E-22 6E-27 180.0 7.0 163 140-324 17-214 (214)
60 TIGR01967 DEAH_box_HrpA ATP-de 99.9 2.2E-22 4.8E-27 216.0 7.5 116 1-126 285-400 (1283)
61 COG4525 TauB ABC-type taurine 99.9 3.7E-22 8E-27 171.3 7.3 167 139-327 19-213 (259)
62 cd03219 ABC_Mj1267_LivG_branch 99.9 6.3E-22 1.4E-26 180.3 9.0 166 140-327 15-223 (236)
63 cd03235 ABC_Metallic_Cations A 99.9 3.3E-22 7.2E-27 179.4 6.9 164 140-325 14-210 (213)
64 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3.8E-22 8.3E-27 179.6 7.3 161 141-324 20-217 (218)
65 TIGR03522 GldA_ABC_ATP gliding 99.9 3.8E-22 8.3E-27 188.4 7.4 165 141-327 18-212 (301)
66 PRK09536 btuD corrinoid ABC tr 99.9 2.9E-22 6.2E-27 195.2 6.6 166 140-327 18-219 (402)
67 cd03298 ABC_ThiQ_thiamine_tran 99.9 4.8E-22 1E-26 178.1 7.5 162 143-326 16-208 (211)
68 cd03296 ABC_CysA_sulfate_impor 99.9 6.8E-22 1.5E-26 180.6 8.1 166 140-327 17-217 (239)
69 TIGR01288 nodI ATP-binding ABC 99.9 7E-22 1.5E-26 186.8 8.3 166 140-327 19-215 (303)
70 cd03265 ABC_DrrA DrrA is the A 99.9 5.4E-22 1.2E-26 179.0 7.2 166 140-327 15-212 (220)
71 cd03225 ABC_cobalt_CbiO_domain 99.9 5.6E-22 1.2E-26 177.6 7.0 162 141-324 17-211 (211)
72 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 8.2E-22 1.8E-26 166.3 7.5 127 142-324 17-144 (144)
73 PRK11153 metN DL-methionine tr 99.9 5.9E-22 1.3E-26 190.2 7.4 165 141-327 21-221 (343)
74 cd03266 ABC_NatA_sodium_export 99.9 6E-22 1.3E-26 178.3 7.0 165 140-326 20-215 (218)
75 cd03216 ABC_Carb_Monos_I This 99.9 6.2E-22 1.3E-26 170.5 6.8 142 141-326 16-161 (163)
76 PRK11131 ATP-dependent RNA hel 99.9 5.5E-22 1.2E-26 212.4 7.7 114 1-124 292-405 (1294)
77 cd03269 ABC_putative_ATPase Th 99.9 5.6E-22 1.2E-26 177.5 6.6 164 141-326 16-207 (210)
78 cd03294 ABC_Pro_Gly_Bertaine T 99.9 7.8E-22 1.7E-26 183.4 7.8 166 140-327 39-241 (269)
79 cd03218 ABC_YhbG The ABC trans 99.9 1.3E-21 2.8E-26 177.8 9.0 165 140-326 15-212 (232)
80 COG1122 CbiO ABC-type cobalt t 99.9 2.7E-22 5.9E-27 181.6 4.4 165 139-325 18-217 (235)
81 PRK11144 modC molybdate transp 99.9 1.6E-21 3.5E-26 187.8 10.0 163 143-327 16-209 (352)
82 cd03263 ABC_subfamily_A The AB 99.9 8.6E-22 1.9E-26 177.6 7.4 165 140-326 17-211 (220)
83 COG1117 PstB ABC-type phosphat 99.9 4.8E-22 1E-26 172.9 5.5 167 138-326 20-227 (253)
84 TIGR01184 ntrCD nitrate transp 99.9 8.1E-22 1.7E-26 179.2 7.1 163 143-327 3-195 (230)
85 cd03214 ABC_Iron-Siderophores_ 99.9 1.2E-21 2.7E-26 171.3 7.9 154 141-326 15-177 (180)
86 cd03256 ABC_PhnC_transporter A 99.9 1.1E-21 2.5E-26 179.1 8.0 165 141-327 17-225 (241)
87 cd03301 ABC_MalK_N The N-termi 99.8 9.2E-22 2E-26 176.5 7.0 165 140-326 15-210 (213)
88 TIGR02315 ABC_phnC phosphonate 99.8 1.1E-21 2.3E-26 179.6 7.4 164 140-326 17-225 (243)
89 cd03262 ABC_HisP_GlnQ_permease 99.8 1E-21 2.2E-26 176.1 7.1 163 141-325 16-213 (213)
90 PRK13637 cbiO cobalt transport 99.8 1.3E-21 2.8E-26 183.6 7.7 166 140-327 22-225 (287)
91 cd03295 ABC_OpuCA_Osmoprotecti 99.8 1.3E-21 2.9E-26 179.0 7.6 165 141-327 17-216 (242)
92 cd03268 ABC_BcrA_bacitracin_re 99.8 1.3E-21 2.9E-26 174.9 7.4 165 140-326 15-205 (208)
93 PRK15177 Vi polysaccharide exp 99.8 1.1E-21 2.4E-26 176.3 6.8 163 142-326 4-182 (213)
94 cd03224 ABC_TM1139_LivF_branch 99.8 1.3E-21 2.7E-26 176.7 7.2 165 141-327 16-212 (222)
95 cd03258 ABC_MetN_methionine_tr 99.8 1.9E-21 4.1E-26 176.9 8.3 165 141-327 21-221 (233)
96 COG0411 LivG ABC-type branched 99.8 1.7E-22 3.8E-27 179.5 1.4 171 133-325 12-228 (250)
97 PRK13647 cbiO cobalt transport 99.8 1E-21 2.3E-26 183.0 6.7 166 140-327 20-218 (274)
98 cd03264 ABC_drug_resistance_li 99.8 1.5E-21 3.3E-26 174.9 7.3 164 140-326 15-208 (211)
99 cd03292 ABC_FtsE_transporter F 99.8 1.1E-21 2.3E-26 176.1 6.2 163 141-325 17-214 (214)
100 PRK10070 glycine betaine trans 99.8 1.5E-21 3.2E-26 190.1 7.3 165 141-327 44-245 (400)
101 TIGR03415 ABC_choXWV_ATP choli 99.8 2.1E-21 4.5E-26 187.9 8.1 166 140-327 39-245 (382)
102 PRK10908 cell division protein 99.8 2E-21 4.2E-26 175.6 7.4 164 141-326 18-216 (222)
103 COG1137 YhbG ABC-type (unclass 99.8 1.7E-22 3.7E-27 174.0 0.4 167 140-326 19-218 (243)
104 cd03260 ABC_PstB_phosphate_tra 99.8 2.6E-21 5.7E-26 175.3 8.2 166 140-326 15-219 (227)
105 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 1.9E-21 4.2E-26 176.0 7.2 165 140-326 37-221 (224)
106 PRK13641 cbiO cobalt transport 99.8 2.1E-21 4.6E-26 182.1 7.4 166 140-327 22-225 (287)
107 PRK14250 phosphate ABC transpo 99.8 3.5E-21 7.6E-26 176.1 8.5 165 141-327 19-212 (241)
108 PRK14247 phosphate ABC transpo 99.8 4.7E-21 1E-25 176.1 9.4 167 140-327 18-225 (250)
109 TIGR03411 urea_trans_UrtD urea 99.8 3E-21 6.6E-26 176.5 8.0 166 140-327 17-222 (242)
110 PRK11248 tauB taurine transpor 99.8 2.7E-21 5.9E-26 178.4 7.7 166 141-328 17-212 (255)
111 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 3.5E-21 7.7E-26 175.5 8.3 164 141-327 17-212 (236)
112 TIGR03410 urea_trans_UrtE urea 99.8 3.5E-21 7.5E-26 174.8 8.1 166 140-327 15-212 (230)
113 TIGR02142 modC_ABC molybdenum 99.8 7.1E-21 1.5E-25 183.5 10.5 163 143-327 15-212 (354)
114 cd03215 ABC_Carb_Monos_II This 99.8 2.3E-21 5.1E-26 169.9 6.3 161 140-325 15-182 (182)
115 TIGR00972 3a0107s01c2 phosphat 99.8 4.5E-21 9.7E-26 176.0 8.4 166 140-327 16-223 (247)
116 PRK11300 livG leucine/isoleuci 99.8 3E-21 6.4E-26 177.9 7.2 166 140-327 20-234 (255)
117 cd03223 ABCD_peroxisomal_ALDP 99.8 1.4E-21 3E-26 168.9 4.6 146 141-323 17-163 (166)
118 PRK10619 histidine/lysine/argi 99.8 2.8E-21 6.1E-26 178.4 6.9 165 141-327 21-232 (257)
119 PRK09493 glnQ glutamine ABC tr 99.8 3.8E-21 8.2E-26 175.7 7.7 166 140-327 16-216 (240)
120 TIGR02211 LolD_lipo_ex lipopro 99.8 3.4E-21 7.3E-26 173.8 7.2 162 141-325 21-219 (221)
121 cd03246 ABCC_Protease_Secretio 99.8 2.8E-21 6.2E-26 168.0 6.4 151 141-325 18-173 (173)
122 cd03222 ABC_RNaseL_inhibitor T 99.8 3E-21 6.4E-26 168.1 6.4 133 146-332 20-157 (177)
123 PRK13643 cbiO cobalt transport 99.8 3.1E-21 6.7E-26 181.1 7.0 166 140-327 21-224 (288)
124 TIGR01277 thiQ thiamine ABC tr 99.8 9.8E-21 2.1E-25 170.0 9.9 163 143-327 16-209 (213)
125 TIGR01978 sufC FeS assembly AT 99.8 7.2E-21 1.6E-25 174.0 9.2 165 141-326 16-224 (243)
126 PRK14268 phosphate ABC transpo 99.8 4.6E-21 1E-25 177.1 7.9 167 140-327 27-233 (258)
127 cd03245 ABCC_bacteriocin_expor 99.8 3.3E-21 7.1E-26 173.7 6.5 164 140-326 19-217 (220)
128 KOG0921|consensus 99.8 8.5E-21 1.9E-25 191.2 10.0 221 126-348 368-751 (1282)
129 PRK11231 fecE iron-dicitrate t 99.8 4E-21 8.6E-26 177.2 7.1 165 141-327 18-218 (255)
130 PRK11264 putative amino-acid A 99.8 5.5E-21 1.2E-25 175.7 8.1 166 140-327 18-224 (250)
131 PRK11831 putative ABC transpor 99.8 5.4E-21 1.2E-25 177.7 7.9 165 141-327 23-224 (269)
132 cd03237 ABC_RNaseL_inhibitor_d 99.8 9.2E-21 2E-25 173.8 9.3 157 147-325 21-194 (246)
133 PRK15079 oligopeptide ABC tran 99.8 3.9E-21 8.5E-26 183.5 7.0 166 141-328 37-243 (331)
134 PRK13650 cbiO cobalt transport 99.8 3.8E-21 8.1E-26 179.7 6.7 165 140-327 22-220 (279)
135 TIGR02770 nickel_nikD nickel i 99.8 2E-21 4.4E-26 176.5 4.8 165 142-327 3-206 (230)
136 PRK13634 cbiO cobalt transport 99.8 3.8E-21 8.2E-26 180.7 6.6 166 140-327 22-226 (290)
137 PRK13651 cobalt transporter AT 99.8 3.7E-21 8.1E-26 181.8 6.6 166 140-327 22-245 (305)
138 PRK11308 dppF dipeptide transp 99.8 7.7E-21 1.7E-25 181.2 8.7 167 140-328 30-236 (327)
139 PRK10575 iron-hydroxamate tran 99.8 4.9E-21 1.1E-25 177.6 7.1 166 140-327 26-228 (265)
140 COG3840 ThiQ ABC-type thiamine 99.8 4.7E-21 1E-25 162.9 6.3 159 147-327 21-210 (231)
141 cd03247 ABCC_cytochrome_bd The 99.8 5.7E-21 1.2E-25 166.8 7.0 155 141-326 18-175 (178)
142 PRK13638 cbiO cobalt transport 99.8 4.7E-21 1E-25 178.3 6.8 166 140-327 16-216 (271)
143 PRK11022 dppD dipeptide transp 99.8 6.5E-21 1.4E-25 181.7 7.9 167 140-328 22-235 (326)
144 PRK14269 phosphate ABC transpo 99.8 6.9E-21 1.5E-25 174.7 7.8 168 140-328 17-222 (246)
145 PRK14273 phosphate ABC transpo 99.8 7.8E-21 1.7E-25 175.2 8.1 167 140-327 22-229 (254)
146 PRK14242 phosphate transporter 99.8 1.1E-20 2.3E-25 174.1 8.9 167 140-327 21-228 (253)
147 PRK15093 antimicrobial peptide 99.8 8.8E-21 1.9E-25 181.2 8.7 168 140-328 22-240 (330)
148 PRK11614 livF leucine/isoleuci 99.8 3.9E-21 8.4E-26 175.3 5.9 165 140-326 20-216 (237)
149 PRK13646 cbiO cobalt transport 99.8 5.7E-21 1.2E-25 179.1 7.2 166 140-327 22-226 (286)
150 PRK10771 thiQ thiamine transpo 99.8 5.6E-21 1.2E-25 173.8 6.8 162 143-326 17-209 (232)
151 cd03228 ABCC_MRP_Like The MRP 99.8 5.8E-21 1.3E-25 165.7 6.7 152 140-324 17-171 (171)
152 PRK13644 cbiO cobalt transport 99.8 5.1E-21 1.1E-25 178.4 6.7 165 140-327 17-215 (274)
153 cd03297 ABC_ModC_molybdenum_tr 99.8 8.5E-21 1.9E-25 170.4 7.9 161 143-326 16-211 (214)
154 cd03229 ABC_Class3 This class 99.8 3.6E-21 7.8E-26 168.1 5.3 153 141-324 16-178 (178)
155 TIGR03740 galliderm_ABC gallid 99.8 7.9E-21 1.7E-25 171.7 7.7 164 141-327 16-204 (223)
156 cd03257 ABC_NikE_OppD_transpor 99.8 7.5E-21 1.6E-25 172.2 7.5 164 141-326 21-225 (228)
157 COG3638 ABC-type phosphate/pho 99.8 2E-21 4.3E-26 171.7 3.5 167 140-331 19-229 (258)
158 cd03267 ABC_NatA_like Similar 99.8 7.8E-21 1.7E-25 173.3 7.5 165 140-326 36-233 (236)
159 PRK10584 putative ABC transpor 99.8 9.1E-21 2E-25 171.8 7.9 163 141-326 26-225 (228)
160 PRK14267 phosphate ABC transpo 99.8 1E-20 2.2E-25 174.2 8.4 167 140-327 19-228 (253)
161 PRK10895 lipopolysaccharide AB 99.8 8.1E-21 1.8E-25 173.6 7.4 165 141-327 19-217 (241)
162 PRK13649 cbiO cobalt transport 99.8 6.3E-21 1.4E-25 178.3 6.7 165 141-327 23-225 (280)
163 cd03230 ABC_DR_subfamily_A Thi 99.8 6E-21 1.3E-25 165.9 6.1 152 140-324 15-172 (173)
164 PRK11124 artP arginine transpo 99.8 9.9E-21 2.1E-25 173.2 7.7 166 140-327 17-221 (242)
165 PRK14235 phosphate transporter 99.8 9.9E-21 2.1E-25 175.8 7.8 167 140-327 34-242 (267)
166 PRK11629 lolD lipoprotein tran 99.8 1.1E-20 2.3E-25 172.0 7.8 163 141-326 25-224 (233)
167 PRK13652 cbiO cobalt transport 99.8 6.7E-21 1.5E-25 177.9 6.4 166 140-327 19-218 (277)
168 PRK10253 iron-enterobactin tra 99.8 9E-21 1.9E-25 175.9 7.2 165 140-327 22-224 (265)
169 PRK14262 phosphate ABC transpo 99.8 1.5E-20 3.3E-25 172.7 8.6 166 141-327 19-225 (250)
170 PRK13631 cbiO cobalt transport 99.8 8.3E-21 1.8E-25 180.5 7.0 166 140-327 41-256 (320)
171 PRK14251 phosphate ABC transpo 99.8 1.2E-20 2.5E-25 173.6 7.8 167 140-327 19-226 (251)
172 cd03252 ABCC_Hemolysin The ABC 99.8 1.1E-20 2.3E-25 172.4 7.3 164 141-327 18-216 (237)
173 KOG0058|consensus 99.8 1.2E-20 2.6E-25 189.2 8.2 168 138-328 481-683 (716)
174 PRK15112 antimicrobial peptide 99.8 1.5E-20 3.2E-25 174.6 8.4 166 140-327 28-230 (267)
175 cd03300 ABC_PotA_N PotA is an 99.8 1.6E-20 3.5E-25 170.8 8.4 166 140-327 15-211 (232)
176 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.2E-20 2.5E-25 168.0 7.2 165 140-328 15-186 (200)
177 PRK10744 pstB phosphate transp 99.8 1.5E-20 3.3E-25 173.8 8.3 167 140-327 28-235 (260)
178 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 1.5E-20 3.2E-25 171.6 8.0 164 141-327 19-217 (238)
179 PRK13636 cbiO cobalt transport 99.8 1.3E-20 2.9E-25 176.4 7.8 165 140-326 21-221 (283)
180 PRK13548 hmuV hemin importer A 99.8 1.4E-20 3.1E-25 173.9 7.9 166 140-327 17-221 (258)
181 PRK09473 oppD oligopeptide tra 99.8 1.6E-20 3.4E-25 179.3 8.4 168 140-328 31-243 (330)
182 PRK15439 autoinducer 2 ABC tra 99.8 9.1E-21 2E-25 191.4 7.1 166 140-327 26-220 (510)
183 PRK11701 phnK phosphonate C-P 99.8 8.7E-21 1.9E-25 175.3 6.3 165 141-327 22-232 (258)
184 cd03254 ABCC_Glucan_exporter_l 99.8 1.3E-20 2.8E-25 170.9 7.3 165 140-327 18-217 (229)
185 TIGR03771 anch_rpt_ABC anchore 99.8 2.8E-20 6.1E-25 168.2 9.5 157 147-326 2-191 (223)
186 TIGR02769 nickel_nikE nickel i 99.8 1.8E-20 3.8E-25 173.9 8.3 165 141-327 27-231 (265)
187 PRK13645 cbiO cobalt transport 99.8 1.2E-20 2.7E-25 177.1 7.2 166 140-327 26-231 (289)
188 cd03251 ABCC_MsbA MsbA is an e 99.8 1.2E-20 2.7E-25 171.6 7.0 163 141-326 18-215 (234)
189 PRK14248 phosphate ABC transpo 99.8 1.7E-20 3.8E-25 174.2 8.0 167 140-327 36-243 (268)
190 cd03234 ABCG_White The White s 99.8 2E-20 4.3E-25 169.5 8.1 166 140-326 22-223 (226)
191 cd03369 ABCC_NFT1 Domain 2 of 99.8 2.1E-20 4.5E-25 167.1 8.0 163 140-326 23-202 (207)
192 PRK14259 phosphate ABC transpo 99.8 2E-20 4.3E-25 174.0 8.0 162 140-322 28-228 (269)
193 PRK13549 xylose transporter AT 99.8 1.5E-20 3.3E-25 189.7 7.8 166 140-326 277-484 (506)
194 PRK13549 xylose transporter AT 99.8 1.5E-20 3.2E-25 189.7 7.7 166 140-326 20-222 (506)
195 PRK09544 znuC high-affinity zi 99.8 1.1E-20 2.3E-25 174.0 6.1 160 141-323 20-197 (251)
196 cd03213 ABCG_EPDR ABCG transpo 99.8 8.2E-21 1.8E-25 168.1 5.1 159 140-326 24-191 (194)
197 PRK13635 cbiO cobalt transport 99.8 1.3E-20 2.9E-25 176.0 6.7 164 140-326 22-219 (279)
198 PRK09984 phosphonate/organopho 99.8 1.9E-20 4.1E-25 173.4 7.7 166 140-326 19-232 (262)
199 PRK13639 cbiO cobalt transport 99.8 1.8E-20 3.9E-25 174.8 7.5 165 141-327 18-217 (275)
200 PRK10762 D-ribose transporter 99.8 1.5E-20 3.2E-25 189.5 7.5 166 140-327 19-221 (501)
201 TIGR03005 ectoine_ehuA ectoine 99.8 2E-20 4.2E-25 172.3 7.6 166 140-327 15-227 (252)
202 PRK10247 putative ABC transpor 99.8 2E-20 4.3E-25 169.4 7.5 169 140-331 22-223 (225)
203 PRK13546 teichoic acids export 99.8 1.8E-20 3.8E-25 173.7 7.2 165 141-327 40-223 (264)
204 PRK14239 phosphate transporter 99.8 2.3E-20 5E-25 171.7 7.9 167 140-327 20-227 (252)
205 PRK14245 phosphate ABC transpo 99.8 2.9E-20 6.4E-25 170.9 8.6 166 141-327 19-225 (250)
206 PRK13632 cbiO cobalt transport 99.8 1.6E-20 3.4E-25 174.8 6.8 164 141-327 25-222 (271)
207 PRK14241 phosphate transporter 99.8 2.1E-20 4.7E-25 172.6 7.6 167 140-327 19-233 (258)
208 PRK14256 phosphate ABC transpo 99.8 2.5E-20 5.4E-25 171.6 8.0 168 140-328 19-228 (252)
209 cd03231 ABC_CcmA_heme_exporter 99.8 2.2E-20 4.8E-25 166.2 7.4 158 141-320 16-198 (201)
210 cd03232 ABC_PDR_domain2 The pl 99.8 1E-20 2.2E-25 167.3 5.1 157 141-326 23-189 (192)
211 PRK14244 phosphate ABC transpo 99.8 2.6E-20 5.7E-25 171.3 8.0 167 140-327 20-228 (251)
212 TIGR02323 CP_lyasePhnK phospho 99.8 9.7E-21 2.1E-25 174.4 5.1 165 141-327 19-229 (253)
213 TIGR03873 F420-0_ABC_ATP propo 99.8 1.9E-20 4.1E-25 172.8 7.0 166 140-327 16-217 (256)
214 PRK14253 phosphate ABC transpo 99.8 3E-20 6.5E-25 170.7 8.3 167 140-327 18-224 (249)
215 PRK10418 nikD nickel transport 99.8 2.1E-20 4.6E-25 172.3 7.2 166 141-327 19-221 (254)
216 TIGR00968 3a0106s01 sulfate AB 99.8 2.3E-20 5.1E-25 170.3 7.3 166 140-327 15-211 (237)
217 PRK09700 D-allose transporter 99.8 1.7E-20 3.7E-25 189.4 7.1 165 140-326 20-224 (510)
218 PRK13648 cbiO cobalt transport 99.8 2.9E-20 6.2E-25 172.9 8.0 164 141-327 25-222 (269)
219 cd03233 ABC_PDR_domain1 The pl 99.8 2.7E-20 5.9E-25 165.8 7.4 164 141-326 23-199 (202)
220 cd03299 ABC_ModC_like Archeal 99.8 2.8E-20 6.1E-25 169.5 7.6 165 141-327 15-210 (235)
221 PRK14240 phosphate transporter 99.8 3.4E-20 7.4E-25 170.4 8.1 167 140-327 18-225 (250)
222 COG4608 AppF ABC-type oligopep 99.8 1.6E-20 3.4E-25 170.2 5.7 158 138-328 26-191 (268)
223 PRK13640 cbiO cobalt transport 99.8 2.6E-20 5.6E-25 174.3 7.4 166 140-327 22-223 (282)
224 PRK14270 phosphate ABC transpo 99.8 3.9E-20 8.5E-25 170.2 8.4 166 141-327 20-226 (251)
225 PRK10938 putative molybdenum t 99.8 2.2E-20 4.7E-25 187.8 7.3 165 140-326 18-214 (490)
226 PHA02653 RNA helicase NPH-II; 99.8 3.3E-20 7.1E-25 190.4 8.6 198 140-349 168-492 (675)
227 PRK13633 cobalt transporter AT 99.8 2.5E-20 5.5E-25 174.2 7.2 165 140-327 25-224 (280)
228 COG2274 SunT ABC-type bacterio 99.8 3.1E-20 6.7E-25 191.6 8.5 167 139-329 487-689 (709)
229 PRK14237 phosphate transporter 99.8 3.3E-20 7.1E-25 172.3 7.9 167 140-327 35-242 (267)
230 PRK11819 putative ABC transpor 99.8 3.1E-20 6.6E-25 189.4 8.3 165 140-326 22-239 (556)
231 PRK10261 glutathione transport 99.8 2.7E-20 5.9E-25 192.0 7.9 166 140-327 339-544 (623)
232 TIGR02633 xylG D-xylose ABC tr 99.8 2.8E-20 6.1E-25 187.4 7.9 166 140-326 16-220 (500)
233 PRK14236 phosphate transporter 99.8 4.6E-20 1E-24 171.8 8.6 166 141-327 41-247 (272)
234 PRK11288 araG L-arabinose tran 99.8 2.7E-20 5.7E-25 187.7 7.4 165 140-326 268-475 (501)
235 TIGR02633 xylG D-xylose ABC tr 99.8 2.7E-20 5.8E-25 187.6 7.5 166 140-326 275-482 (500)
236 PRK09700 D-allose transporter 99.8 2.8E-20 6E-25 187.9 7.6 165 140-326 278-488 (510)
237 COG0444 DppD ABC-type dipeptid 99.8 2.4E-20 5.3E-25 172.4 6.4 168 139-328 19-235 (316)
238 PRK10982 galactose/methyl gala 99.8 3.4E-20 7.3E-25 186.5 7.9 166 140-327 13-214 (491)
239 TIGR03269 met_CoM_red_A2 methy 99.8 3.2E-20 7E-25 187.9 7.8 165 140-326 299-507 (520)
240 PRK14274 phosphate ABC transpo 99.8 4.6E-20 1E-24 170.5 8.1 167 140-327 27-234 (259)
241 PRK14275 phosphate ABC transpo 99.8 3.9E-20 8.4E-25 173.5 7.6 165 141-326 55-260 (286)
242 PRK14257 phosphate ABC transpo 99.8 3.5E-20 7.6E-25 176.8 7.3 167 140-327 97-304 (329)
243 cd03248 ABCC_TAP TAP, the Tran 99.8 4.4E-20 9.6E-25 167.1 7.6 163 140-325 29-226 (226)
244 cd03238 ABC_UvrA The excision 99.8 3.1E-20 6.6E-25 161.6 6.2 142 141-325 11-166 (176)
245 PRK13538 cytochrome c biogenes 99.8 3.8E-20 8.3E-25 165.0 6.9 158 141-320 17-202 (204)
246 PRK10636 putative ABC transpor 99.8 2.7E-20 5.8E-25 192.3 6.7 165 140-326 327-506 (638)
247 PRK10419 nikE nickel transport 99.8 5.1E-20 1.1E-24 171.1 7.8 165 141-327 28-232 (268)
248 cd03244 ABCC_MRP_domain2 Domai 99.8 4E-20 8.7E-25 166.8 6.9 163 140-326 19-216 (221)
249 PRK13543 cytochrome c biogenes 99.8 5.8E-20 1.2E-24 165.2 7.9 161 140-322 26-212 (214)
250 TIGR03269 met_CoM_red_A2 methy 99.8 4.3E-20 9.4E-25 186.9 7.9 166 140-326 15-248 (520)
251 PRK14271 phosphate ABC transpo 99.8 5.8E-20 1.3E-24 171.4 8.2 167 140-327 36-242 (276)
252 PRK15439 autoinducer 2 ABC tra 99.8 2.9E-20 6.3E-25 187.7 6.5 169 141-332 279-487 (510)
253 PRK14243 phosphate transporter 99.8 8.3E-20 1.8E-24 169.3 9.0 166 141-327 26-239 (264)
254 PRK14272 phosphate ABC transpo 99.8 7.2E-20 1.6E-24 168.4 8.5 167 140-327 19-227 (252)
255 PRK03695 vitamin B12-transport 99.8 4.9E-20 1.1E-24 169.4 7.3 164 141-327 12-213 (248)
256 PRK14254 phosphate ABC transpo 99.8 5.1E-20 1.1E-24 172.5 7.5 167 140-327 54-260 (285)
257 PRK13545 tagH teichoic acids e 99.8 3.8E-20 8.1E-25 183.3 6.9 165 141-327 40-223 (549)
258 PRK15064 ABC transporter ATP-b 99.8 3.6E-20 7.9E-25 187.9 6.9 165 140-326 334-514 (530)
259 PRK10261 glutathione transport 99.8 4.6E-20 1E-24 190.2 7.5 166 140-327 31-249 (623)
260 PRK13642 cbiO cobalt transport 99.8 5.1E-20 1.1E-24 171.9 7.1 165 140-327 22-220 (277)
261 PRK10762 D-ribose transporter 99.8 5.3E-20 1.1E-24 185.5 7.6 165 140-326 267-474 (501)
262 cd03253 ABCC_ATM1_transporter 99.8 7.2E-20 1.6E-24 166.8 7.7 163 141-327 17-215 (236)
263 PRK14249 phosphate ABC transpo 99.8 9E-20 1.9E-24 167.8 8.4 167 140-327 19-226 (251)
264 CHL00131 ycf16 sulfate ABC tra 99.8 1.1E-19 2.4E-24 167.2 9.0 167 140-327 22-232 (252)
265 PRK15134 microcin C ABC transp 99.8 6.3E-20 1.4E-24 186.1 8.0 165 140-327 301-506 (529)
266 TIGR01187 potA spermidine/putr 99.8 9.3E-20 2E-24 173.8 8.7 150 156-327 1-181 (325)
267 PRK11288 araG L-arabinose tran 99.8 5.9E-20 1.3E-24 185.1 6.9 165 140-326 19-219 (501)
268 TIGR03608 L_ocin_972_ABC putat 99.8 6.2E-20 1.4E-24 163.7 6.2 157 141-320 14-206 (206)
269 PRK10636 putative ABC transpor 99.8 1E-19 2.3E-24 187.9 8.7 165 140-326 16-225 (638)
270 PRK15134 microcin C ABC transp 99.8 9.9E-20 2.2E-24 184.7 8.3 167 140-327 24-237 (529)
271 PRK14265 phosphate ABC transpo 99.8 1.1E-19 2.3E-24 169.5 7.9 166 140-326 35-248 (274)
272 PRK09580 sufC cysteine desulfu 99.8 1.4E-19 3E-24 166.1 8.3 167 140-327 16-226 (248)
273 PRK15064 ABC transporter ATP-b 99.8 5E-20 1.1E-24 186.9 6.0 165 140-326 16-231 (530)
274 PRK14263 phosphate ABC transpo 99.8 1.3E-19 2.8E-24 167.8 8.0 166 141-327 24-236 (261)
275 PRK14238 phosphate transporter 99.8 1.4E-19 2.9E-24 168.5 8.3 166 141-327 40-246 (271)
276 TIGR02982 heterocyst_DevA ABC 99.8 1.3E-19 2.8E-24 163.5 7.8 161 141-325 21-219 (220)
277 PRK14261 phosphate ABC transpo 99.8 1.3E-19 2.9E-24 166.9 8.0 166 141-327 22-228 (253)
278 PRK13547 hmuV hemin importer A 99.8 9.9E-20 2.1E-24 169.4 7.3 165 141-327 17-235 (272)
279 PRK14260 phosphate ABC transpo 99.8 1.3E-19 2.8E-24 167.6 7.9 167 140-327 22-234 (259)
280 PRK10982 galactose/methyl gala 99.8 9.3E-20 2E-24 183.3 7.4 165 140-326 263-470 (491)
281 PRK14255 phosphate ABC transpo 99.8 1.7E-19 3.8E-24 165.9 8.5 167 140-327 20-227 (252)
282 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 9.1E-20 2E-24 185.8 7.3 165 140-326 20-237 (552)
283 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.2E-19 2.5E-24 169.0 7.3 163 140-327 19-216 (275)
284 cd03250 ABCC_MRP_domain1 Domai 99.8 1.1E-19 2.4E-24 162.0 6.9 161 140-324 20-204 (204)
285 PRK11147 ABC transporter ATPas 99.8 1.4E-19 3.1E-24 187.1 8.5 164 140-326 18-232 (635)
286 TIGR01166 cbiO cobalt transpor 99.8 8.2E-20 1.8E-24 161.1 5.6 116 141-257 8-154 (190)
287 COG1123 ATPase components of v 99.8 1.2E-19 2.7E-24 179.1 7.4 168 139-328 23-236 (539)
288 PRK15056 manganese/iron transp 99.8 4.8E-20 1E-24 171.7 4.2 163 141-326 23-220 (272)
289 PRK11174 cysteine/glutathione 99.8 1.3E-19 2.7E-24 186.2 7.7 165 140-328 365-564 (588)
290 TIGR02324 CP_lyasePhnL phospho 99.8 1.4E-19 3.1E-24 163.6 7.0 159 141-321 24-223 (224)
291 PRK14258 phosphate ABC transpo 99.8 2.4E-19 5.1E-24 166.0 8.2 167 140-327 22-236 (261)
292 PLN03073 ABC transporter F fam 99.8 1.4E-19 3.1E-24 188.2 7.5 165 140-326 524-703 (718)
293 PRK14246 phosphate ABC transpo 99.8 2.2E-19 4.8E-24 165.8 7.7 166 140-327 25-232 (257)
294 PRK14266 phosphate ABC transpo 99.8 2.5E-19 5.4E-24 164.7 8.0 166 141-327 19-225 (250)
295 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.6E-19 3.5E-24 184.0 7.3 165 140-326 337-520 (552)
296 COG4148 ModC ABC-type molybdat 99.8 1.2E-19 2.6E-24 163.7 5.5 164 145-326 18-208 (352)
297 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 2.1E-19 4.6E-24 187.6 8.1 165 140-328 468-665 (686)
298 PRK11819 putative ABC transpor 99.8 2E-19 4.3E-24 183.4 7.7 165 140-326 339-522 (556)
299 PRK10938 putative molybdenum t 99.8 1.4E-19 3.1E-24 181.9 6.4 166 140-326 275-482 (490)
300 PRK14252 phosphate ABC transpo 99.8 3E-19 6.5E-24 165.7 7.7 167 140-327 31-240 (265)
301 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 2.9E-19 6.3E-24 187.3 8.3 166 140-328 494-692 (710)
302 TIGR01257 rim_protein retinal- 99.8 1.1E-19 2.4E-24 203.1 5.3 166 140-327 1954-2150(2272)
303 COG1123 ATPase components of v 99.8 2.8E-19 6E-24 176.6 7.1 169 138-328 304-511 (539)
304 TIGR03375 type_I_sec_LssB type 99.8 3.7E-19 7.9E-24 186.1 8.4 166 140-328 480-680 (694)
305 PRK11147 ABC transporter ATPas 99.8 2.1E-19 4.5E-24 185.8 6.5 165 140-326 334-517 (635)
306 TIGR00958 3a01208 Conjugate Tr 99.8 4.7E-19 1E-23 185.5 9.2 166 140-328 496-694 (711)
307 COG1134 TagH ABC-type polysacc 99.8 2.6E-19 5.7E-24 159.4 5.9 167 138-326 40-226 (249)
308 PRK14264 phosphate ABC transpo 99.8 4.1E-19 8.9E-24 168.0 7.5 167 140-327 60-280 (305)
309 PRK13539 cytochrome c biogenes 99.8 4.3E-19 9.4E-24 158.7 7.1 157 140-320 17-198 (207)
310 COG1129 MglA ABC-type sugar tr 99.8 3.8E-19 8.3E-24 174.5 7.2 177 128-326 11-224 (500)
311 PRK11160 cysteine/glutathione 99.8 4.5E-19 9.8E-24 181.5 7.8 166 140-328 355-554 (574)
312 COG4988 CydD ABC-type transpor 99.8 6.5E-19 1.4E-23 173.5 8.4 166 140-328 336-535 (559)
313 cd03290 ABCC_SUR1_N The SUR do 99.8 4.3E-19 9.2E-24 159.8 6.5 160 140-323 16-217 (218)
314 PRK13409 putative ATPase RIL; 99.8 5.9E-19 1.3E-23 180.3 8.3 159 142-322 356-529 (590)
315 PRK11176 lipid transporter ATP 99.8 6.4E-19 1.4E-23 180.8 8.3 166 140-328 358-559 (582)
316 KOG0055|consensus 99.8 6.8E-19 1.5E-23 185.8 8.6 170 136-328 1001-1205(1228)
317 TIGR01257 rim_protein retinal- 99.8 5.6E-19 1.2E-23 197.6 8.0 166 140-327 945-1140(2272)
318 COG1119 ModF ABC-type molybden 99.8 7.6E-19 1.6E-23 156.4 7.2 165 140-326 46-252 (257)
319 COG4619 ABC-type uncharacteriz 99.8 8.4E-19 1.8E-23 147.4 7.1 165 140-327 18-214 (223)
320 cd00267 ABC_ATPase ABC (ATP-bi 99.8 1.2E-18 2.7E-23 148.8 8.3 139 141-324 15-157 (157)
321 cd03291 ABCC_CFTR1 The CFTR su 99.8 6.3E-19 1.4E-23 164.7 7.0 164 140-326 52-237 (282)
322 cd03236 ABC_RNaseL_inhibitor_d 99.8 9.7E-19 2.1E-23 161.2 8.0 160 141-323 17-215 (255)
323 TIGR01193 bacteriocin_ABC ABC- 99.8 8.5E-19 1.8E-23 183.7 8.4 166 140-328 489-689 (708)
324 cd03288 ABCC_SUR2 The SUR doma 99.8 4.6E-19 1E-23 163.7 5.6 165 140-327 36-234 (257)
325 TIGR01192 chvA glucan exporter 99.8 9.6E-19 2.1E-23 179.4 8.5 165 140-327 350-549 (585)
326 TIGR01842 type_I_sec_PrtD type 99.8 1E-18 2.2E-23 177.9 8.6 166 140-328 333-534 (544)
327 TIGR01189 ccmA heme ABC export 99.8 7.3E-19 1.6E-23 156.0 6.5 116 141-257 16-154 (198)
328 PRK13657 cyclic beta-1,2-gluca 99.8 1.1E-18 2.3E-23 179.3 8.2 166 140-328 350-550 (588)
329 COG1132 MdlB ABC-type multidru 99.8 1.2E-18 2.5E-23 178.3 8.4 165 140-328 344-544 (567)
330 COG4598 HisP ABC-type histidin 99.8 1.1E-18 2.3E-23 148.3 6.6 177 130-328 11-233 (256)
331 PRK10790 putative multidrug tr 99.8 1.5E-18 3.3E-23 178.3 8.6 165 140-328 356-555 (592)
332 PRK10789 putative multidrug tr 99.8 1.1E-18 2.4E-23 178.5 7.5 166 140-328 330-530 (569)
333 TIGR01846 type_I_sec_HlyB type 99.8 1.4E-18 3.1E-23 181.6 8.4 166 140-328 472-672 (694)
334 TIGR02203 MsbA_lipidA lipid A 99.7 1.1E-18 2.3E-23 178.7 6.7 164 140-327 347-547 (571)
335 KOG0055|consensus 99.7 1.6E-18 3.4E-23 183.1 8.0 167 139-328 367-568 (1228)
336 COG4987 CydC ABC-type transpor 99.7 2.3E-18 5E-23 167.6 8.5 166 140-328 353-553 (573)
337 PRK13541 cytochrome c biogenes 99.7 2.9E-18 6.3E-23 151.9 8.3 113 144-257 19-150 (195)
338 TIGR02204 MsbA_rel ABC transpo 99.7 2.5E-18 5.4E-23 176.2 8.0 166 140-328 355-555 (576)
339 PRK10522 multidrug transporter 99.7 2.7E-18 5.8E-23 174.9 8.0 170 140-332 338-534 (547)
340 TIGR01194 cyc_pep_trnsptr cycl 99.7 2.6E-18 5.6E-23 175.3 7.8 165 140-328 357-551 (555)
341 PRK13540 cytochrome c biogenes 99.7 2.5E-18 5.4E-23 152.9 6.5 117 140-257 16-154 (200)
342 KOG0057|consensus 99.7 2.1E-18 4.6E-23 168.0 5.9 162 140-328 367-566 (591)
343 PRK13409 putative ATPase RIL; 99.7 6.3E-18 1.4E-22 172.7 8.7 160 141-323 90-287 (590)
344 COG3845 ABC-type uncharacteriz 99.7 5.2E-18 1.1E-22 163.8 7.1 183 131-333 10-225 (501)
345 COG4604 CeuD ABC-type enteroch 99.7 5.9E-18 1.3E-22 145.8 6.7 164 140-326 16-215 (252)
346 COG1101 PhnK ABC-type uncharac 99.7 1.3E-17 2.7E-22 145.6 8.2 166 140-327 21-229 (263)
347 PLN03073 ABC transporter F fam 99.7 7.9E-18 1.7E-22 175.2 8.0 166 140-326 192-420 (718)
348 cd03270 ABC_UvrA_I The excisio 99.7 1.2E-17 2.6E-22 151.4 7.9 80 225-326 132-223 (226)
349 TIGR02857 CydD thiol reductant 99.7 6.4E-18 1.4E-22 171.5 6.7 158 140-320 337-529 (529)
350 COG0488 Uup ATPase components 99.7 3.6E-18 7.9E-23 171.0 4.4 166 138-325 16-228 (530)
351 PLN03211 ABC transporter G-25; 99.7 5.2E-18 1.1E-22 175.4 5.2 166 140-326 83-286 (659)
352 COG4107 PhnK ABC-type phosphon 99.7 2.9E-17 6.3E-22 138.9 8.3 166 141-328 22-233 (258)
353 PTZ00265 multidrug resistance 99.7 1.3E-17 2.9E-22 185.0 8.0 165 139-325 1182-1440(1466)
354 PLN03232 ABC transporter C fam 99.7 7.6E-18 1.6E-22 188.1 6.0 164 140-328 1251-1450(1495)
355 PLN03130 ABC transporter C fam 99.7 7.7E-18 1.7E-22 188.6 5.9 165 140-328 1254-1453(1622)
356 TIGR00954 3a01203 Peroxysomal 99.7 1.4E-17 3E-22 172.8 7.2 160 140-322 467-653 (659)
357 COG4161 ArtP ABC-type arginine 99.7 2.9E-17 6.2E-22 137.4 6.4 168 138-328 15-222 (242)
358 TIGR02868 CydC thiol reductant 99.7 2.5E-17 5.4E-22 167.1 6.7 117 140-257 350-497 (529)
359 PTZ00265 multidrug resistance 99.7 2.5E-17 5.4E-22 182.9 7.1 162 140-324 400-656 (1466)
360 PRK10535 macrolide transporter 99.7 4.2E-17 9.1E-22 169.0 7.9 164 141-328 24-224 (648)
361 COG0396 sufC Cysteine desulfur 99.7 6.6E-17 1.4E-21 142.6 7.6 171 139-326 18-224 (251)
362 PLN03130 ABC transporter C fam 99.7 7.2E-17 1.6E-21 180.8 9.1 165 140-328 632-820 (1622)
363 TIGR00957 MRP_assoc_pro multi 99.7 4.9E-17 1.1E-21 181.9 7.6 165 140-328 1301-1500(1522)
364 PLN03232 ABC transporter C fam 99.7 6.7E-17 1.5E-21 180.6 8.6 165 140-328 632-820 (1495)
365 PTZ00243 ABC transporter; Prov 99.7 3E-17 6.6E-22 183.4 5.8 164 140-328 1325-1525(1560)
366 PF00005 ABC_tran: ABC transpo 99.7 6.3E-17 1.4E-21 134.7 5.9 110 146-257 6-135 (137)
367 COG4167 SapF ABC-type antimicr 99.7 2.1E-16 4.6E-21 134.7 9.0 117 139-257 27-176 (267)
368 TIGR00955 3a01204 The Eye Pigm 99.7 5E-17 1.1E-21 167.6 6.2 166 140-326 40-246 (617)
369 TIGR01271 CFTR_protein cystic 99.7 1E-16 2.3E-21 178.9 8.0 164 139-327 1233-1431(1490)
370 COG4618 ArpD ABC-type protease 99.7 1E-16 2.2E-21 155.0 6.3 168 140-334 351-556 (580)
371 TIGR00957 MRP_assoc_pro multi 99.7 1.5E-16 3.2E-21 178.1 8.5 165 140-327 653-841 (1522)
372 COG4172 ABC-type uncharacteriz 99.7 1.5E-16 3.3E-21 150.0 7.2 164 139-328 24-239 (534)
373 PHA02653 RNA helicase NPH-II; 99.7 1.2E-16 2.5E-21 164.4 6.7 108 1-126 401-510 (675)
374 COG0488 Uup ATPase components 99.7 1.5E-16 3.4E-21 159.3 7.3 161 140-322 337-511 (530)
375 TIGR01271 CFTR_protein cystic 99.6 1.5E-16 3.3E-21 177.6 8.0 165 140-327 441-627 (1490)
376 COG4559 ABC-type hemin transpo 99.6 7.4E-17 1.6E-21 140.5 4.0 165 140-326 16-220 (259)
377 PTZ00243 ABC transporter; Prov 99.6 1.6E-16 3.5E-21 177.7 7.3 165 140-327 675-861 (1560)
378 COG4181 Predicted ABC-type tra 99.6 4E-16 8.7E-21 131.7 7.6 162 141-326 26-225 (228)
379 KOG0056|consensus 99.6 2.2E-16 4.8E-21 151.8 6.9 165 140-328 553-753 (790)
380 COG4172 ABC-type uncharacteriz 99.6 6.8E-16 1.5E-20 145.7 9.3 166 139-328 301-508 (534)
381 COG4674 Uncharacterized ABC-ty 99.6 5.3E-17 1.2E-21 139.7 0.7 171 134-326 14-225 (249)
382 KOG0059|consensus 99.6 2E-16 4.4E-21 168.6 4.9 165 140-327 580-778 (885)
383 TIGR00956 3a01205 Pleiotropic 99.6 4.1E-16 8.9E-21 173.0 6.3 165 140-325 778-982 (1394)
384 PLN03140 ABC transporter G fam 99.6 6E-16 1.3E-20 171.5 6.5 165 140-325 895-1099(1470)
385 COG4133 CcmA ABC-type transpor 99.6 2.5E-15 5.4E-20 128.8 8.7 115 142-257 19-157 (209)
386 cd03278 ABC_SMC_barmotin Barmo 99.6 1.4E-15 3.1E-20 134.9 7.6 152 144-321 16-189 (197)
387 KOG0921|consensus 99.6 5.8E-16 1.3E-20 156.7 5.5 116 1-118 649-764 (1282)
388 TIGR00956 3a01205 Pleiotropic 99.6 6E-16 1.3E-20 171.6 5.0 166 140-326 76-290 (1394)
389 KOG0054|consensus 99.6 1.8E-15 4E-20 163.2 7.3 162 140-328 536-723 (1381)
390 PLN03140 ABC transporter G fam 99.6 8.7E-16 1.9E-20 170.2 4.3 167 139-326 179-417 (1470)
391 cd03272 ABC_SMC3_euk Eukaryoti 99.6 1.7E-14 3.8E-19 131.9 10.9 76 225-322 153-235 (243)
392 cd03279 ABC_sbcCD SbcCD and ot 99.6 8.5E-16 1.8E-20 138.0 1.7 80 225-325 118-211 (213)
393 COG5265 ATM1 ABC-type transpor 99.5 2E-14 4.4E-19 136.5 8.2 167 138-328 276-478 (497)
394 COG4778 PhnL ABC-type phosphon 99.5 2.2E-14 4.7E-19 121.1 5.2 116 141-257 27-179 (235)
395 KOG0927|consensus 99.5 3.2E-14 6.8E-19 138.7 5.4 164 140-325 405-584 (614)
396 cd03271 ABC_UvrA_II The excisi 99.5 7.5E-14 1.6E-18 128.7 7.3 80 225-326 164-256 (261)
397 KOG0054|consensus 99.5 5.5E-14 1.2E-18 152.0 6.3 175 130-332 1147-1356(1381)
398 cd03240 ABC_Rad50 The catalyti 99.5 7E-14 1.5E-18 124.8 5.8 75 226-322 111-197 (204)
399 cd03274 ABC_SMC4_euk Eukaryoti 99.4 1.1E-13 2.4E-18 124.2 6.7 75 225-321 122-203 (212)
400 COG4136 ABC-type uncharacteriz 99.4 3.4E-14 7.4E-19 117.7 2.7 122 135-257 12-161 (213)
401 COG1129 MglA ABC-type sugar tr 99.4 2.7E-13 5.8E-18 133.5 7.2 168 138-328 272-482 (500)
402 KOG2355|consensus 99.4 2.5E-13 5.4E-18 118.0 5.9 166 143-327 32-228 (291)
403 cd03276 ABC_SMC6_euk Eukaryoti 99.4 6.5E-13 1.4E-17 118.0 7.9 79 225-325 104-193 (198)
404 cd03275 ABC_SMC1_euk Eukaryoti 99.4 1.6E-12 3.5E-17 119.4 9.0 74 226-321 151-232 (247)
405 cd03273 ABC_SMC2_euk Eukaryoti 99.4 3.5E-13 7.6E-18 124.0 4.1 74 226-321 162-242 (251)
406 KOG0062|consensus 99.4 4.5E-13 9.7E-18 130.1 4.6 113 145-257 100-225 (582)
407 KOG0927|consensus 99.4 3.8E-13 8.3E-18 131.2 4.0 172 133-325 83-297 (614)
408 COG1245 Predicted ATPase, RNas 99.3 1.3E-12 2.9E-17 125.3 6.5 154 147-322 363-531 (591)
409 KOG0062|consensus 99.3 1.8E-12 3.9E-17 126.0 7.0 167 139-327 378-559 (582)
410 COG4138 BtuD ABC-type cobalami 99.3 2.7E-13 5.9E-18 115.1 -0.7 159 144-326 18-211 (248)
411 cd03280 ABC_MutS2 MutS2 homolo 99.3 2.6E-12 5.6E-17 114.2 4.9 142 145-326 21-169 (200)
412 KOG0061|consensus 99.3 1.4E-12 3.1E-17 133.9 3.4 167 138-325 43-249 (613)
413 COG4178 ABC-type uncharacteriz 99.3 3E-12 6.5E-17 128.6 4.7 114 141-257 409-542 (604)
414 KOG0066|consensus 99.2 1.6E-11 3.5E-16 117.3 7.7 157 146-325 608-779 (807)
415 COG1245 Predicted ATPase, RNas 99.2 1.3E-11 2.7E-16 118.6 7.0 152 147-321 96-287 (591)
416 cd03239 ABC_SMC_head The struc 99.2 1E-11 2.3E-16 108.4 5.4 73 226-322 92-172 (178)
417 cd03277 ABC_SMC5_euk Eukaryoti 99.2 4.4E-11 9.4E-16 107.4 9.5 78 226-324 122-211 (213)
418 cd03227 ABC_Class2 ABC-type Cl 99.2 1.3E-11 2.9E-16 106.0 4.6 128 150-322 20-155 (162)
419 cd03285 ABC_MSH2_euk MutS2 hom 99.2 5.9E-11 1.3E-15 107.3 7.2 147 144-329 23-174 (222)
420 COG4615 PvdE ABC-type sideroph 99.1 5.5E-11 1.2E-15 112.5 6.4 169 141-329 339-530 (546)
421 PRK00349 uvrA excinuclease ABC 99.1 7.2E-11 1.6E-15 125.8 8.1 80 225-326 825-917 (943)
422 TIGR00630 uvra excinuclease AB 99.1 4E-11 8.7E-16 127.4 5.4 80 225-326 823-915 (924)
423 PRK00635 excinuclease ABC subu 99.1 9.8E-11 2.1E-15 130.3 8.2 75 225-321 804-885 (1809)
424 cd03243 ABC_MutS_homologs The 99.1 4.6E-11 1E-15 106.3 2.3 139 148-326 26-169 (202)
425 cd03241 ABC_RecN RecN ATPase i 99.1 3.8E-10 8.3E-15 105.3 8.2 76 228-325 168-250 (276)
426 KOG0064|consensus 99.0 4.7E-11 1E-15 116.4 0.6 117 140-257 497-639 (728)
427 COG2401 ABC-type ATPase fused 99.0 6.7E-10 1.5E-14 105.8 7.2 163 140-325 398-587 (593)
428 cd03282 ABC_MSH4_euk MutS4 hom 99.0 5.8E-11 1.3E-15 105.9 -0.7 98 142-257 20-117 (204)
429 KOG0060|consensus 99.0 4.7E-10 1E-14 110.7 5.2 117 140-257 450-597 (659)
430 COG4170 SapD ABC-type antimicr 98.9 1.9E-10 4.2E-15 100.5 0.4 78 229-327 157-239 (330)
431 cd03242 ABC_RecF RecF is a rec 98.8 1.7E-08 3.7E-13 94.0 8.6 78 227-325 180-269 (270)
432 smart00534 MUTSac ATPase domai 98.8 4.1E-09 8.9E-14 92.6 4.2 87 153-257 1-87 (185)
433 TIGR02858 spore_III_AA stage I 98.8 3E-08 6.6E-13 92.0 9.9 39 152-192 112-150 (270)
434 COG3845 ABC-type uncharacteriz 98.8 4.9E-09 1.1E-13 102.1 4.5 164 141-327 274-483 (501)
435 KOG0066|consensus 98.7 8.5E-09 1.9E-13 98.9 4.4 80 226-325 408-487 (807)
436 cd03283 ABC_MutS-like MutS-lik 98.7 1.6E-08 3.4E-13 89.9 4.7 28 148-175 22-49 (199)
437 cd03281 ABC_MSH5_euk MutS5 hom 98.7 1.6E-08 3.4E-13 90.9 4.5 86 152-257 30-117 (213)
438 KOG0065|consensus 98.6 4.9E-09 1.1E-13 112.2 -1.3 119 139-257 805-957 (1391)
439 KOG0063|consensus 98.6 8.8E-08 1.9E-12 91.9 6.5 107 149-257 365-483 (592)
440 TIGR01069 mutS2 MutS2 family p 98.6 3.1E-08 6.7E-13 104.3 3.7 92 148-257 318-411 (771)
441 PRK00409 recombination and DNA 98.5 8.4E-08 1.8E-12 101.3 4.6 90 150-257 326-416 (782)
442 cd03284 ABC_MutS1 MutS1 homolo 98.4 8E-07 1.7E-11 80.0 6.9 23 152-174 31-53 (216)
443 cd03287 ABC_MSH3_euk MutS3 hom 98.4 3.5E-07 7.5E-12 82.6 4.3 42 144-185 24-65 (222)
444 COG3910 Predicted ATPase [Gene 98.4 1.8E-06 4E-11 74.6 8.4 180 129-331 17-212 (233)
445 smart00382 AAA ATPases associa 98.4 2.8E-06 6.1E-11 69.0 9.4 89 151-260 2-90 (148)
446 TIGR00630 uvra excinuclease AB 98.3 6.2E-07 1.4E-11 95.8 4.0 80 225-326 482-573 (924)
447 cd01130 VirB11-like_ATPase Typ 98.2 5.4E-06 1.2E-10 72.8 9.1 46 142-188 16-61 (186)
448 PF02463 SMC_N: RecF/RecN/SMC 98.2 2.2E-06 4.7E-11 77.1 6.5 72 230-320 136-211 (220)
449 PRK00349 uvrA excinuclease ABC 98.2 8.4E-07 1.8E-11 95.0 3.9 81 224-326 483-575 (943)
450 KOG0063|consensus 98.2 1.2E-06 2.5E-11 84.3 3.9 110 147-257 96-240 (592)
451 PRK13695 putative NTPase; Prov 98.2 4.4E-07 9.5E-12 78.7 0.7 81 226-328 74-156 (174)
452 cd01124 KaiC KaiC is a circadi 98.1 7.5E-06 1.6E-10 71.3 7.5 97 153-257 1-104 (187)
453 TIGR02788 VirB11 P-type DNA tr 98.1 9.6E-06 2.1E-10 77.0 8.6 91 144-257 137-227 (308)
454 COG0178 UvrA Excinuclease ATPa 98.1 1.9E-06 4.2E-11 88.6 3.9 32 142-173 618-649 (935)
455 PF07652 Flavi_DEAD: Flaviviru 98.1 3.3E-06 7.2E-11 70.3 4.5 122 148-277 1-124 (148)
456 cd00009 AAA The AAA+ (ATPases 98.1 2.5E-05 5.3E-10 64.0 9.6 35 141-175 7-43 (151)
457 PRK00635 excinuclease ABC subu 98.0 2.9E-06 6.2E-11 95.4 3.9 75 225-321 471-551 (1809)
458 cd01131 PilT Pilus retraction 98.0 1.1E-05 2.4E-10 71.5 6.8 33 153-185 3-35 (198)
459 PRK11776 ATP-dependent RNA hel 98.0 4.6E-05 9.9E-10 76.3 11.5 118 139-259 29-158 (460)
460 cd01120 RecA-like_NTPases RecA 98.0 2.1E-05 4.5E-10 66.2 7.2 94 153-258 1-95 (165)
461 PRK06995 flhF flagellar biosyn 98.0 1.8E-05 3.9E-10 79.0 7.7 60 148-207 253-315 (484)
462 cd01128 rho_factor Transcripti 98.0 5.8E-06 1.3E-10 75.9 3.8 33 144-176 9-41 (249)
463 cd03286 ABC_MSH6_euk MutS6 hom 98.0 2.3E-06 5E-11 77.0 1.0 33 142-174 21-53 (218)
464 PRK14721 flhF flagellar biosyn 97.9 3.8E-05 8.2E-10 75.5 8.9 60 148-207 188-250 (420)
465 cd00046 DEXDc DEAD-like helica 97.9 3.2E-05 7E-10 62.6 7.2 109 153-263 2-118 (144)
466 PRK11634 ATP-dependent RNA hel 97.9 9.2E-05 2E-09 76.8 12.1 119 139-260 31-161 (629)
467 TIGR03015 pepcterm_ATPase puta 97.9 0.00011 2.4E-09 67.9 11.4 37 140-176 31-68 (269)
468 TIGR03238 dnd_assoc_3 dnd syst 97.9 7.7E-06 1.7E-10 80.7 3.4 45 140-186 21-65 (504)
469 PTZ00132 GTP-binding nuclear p 97.9 4E-05 8.7E-10 68.5 7.7 23 235-257 157-179 (215)
470 PRK11776 ATP-dependent RNA hel 97.9 1.1E-05 2.3E-10 80.8 4.0 74 1-83 248-321 (460)
471 TIGR01420 pilT_fam pilus retra 97.8 5.7E-05 1.2E-09 72.8 8.3 37 149-185 120-156 (343)
472 TIGR00634 recN DNA repair prot 97.8 1E-05 2.2E-10 83.0 3.2 75 229-325 439-520 (563)
473 cd00820 PEPCK_HprK Phosphoenol 97.8 7.5E-06 1.6E-10 65.1 1.6 31 142-172 6-36 (107)
474 PRK11192 ATP-dependent RNA hel 97.8 0.00017 3.7E-09 71.6 11.7 121 139-259 26-158 (434)
475 PF13401 AAA_22: AAA domain; P 97.8 2.2E-05 4.9E-10 64.1 4.5 27 149-175 2-28 (131)
476 TIGR00618 sbcc exonuclease Sbc 97.8 1.2E-05 2.7E-10 88.2 3.5 79 224-323 944-1036(1042)
477 PRK08533 flagellar accessory p 97.7 0.00012 2.7E-09 66.5 8.3 29 147-175 20-49 (230)
478 PRK01172 ski2-like helicase; P 97.7 2.8E-05 6.2E-10 81.5 4.2 106 1-116 242-363 (674)
479 PRK10416 signal recognition pa 97.7 0.00019 4.2E-09 68.3 9.4 92 150-258 113-206 (318)
480 PRK10869 recombination and rep 97.7 2.6E-05 5.7E-10 79.7 3.7 74 229-324 429-509 (553)
481 PRK06793 fliI flagellum-specif 97.7 0.0001 2.2E-09 72.6 7.5 99 145-257 150-255 (432)
482 PHA02562 46 endonuclease subun 97.6 3.6E-05 7.8E-10 78.9 3.8 80 227-325 465-555 (562)
483 cd02023 UMPK Uridine monophosp 97.6 4.8E-05 1E-09 67.2 3.9 23 153-175 1-23 (198)
484 PF13555 AAA_29: P-loop contai 97.6 6E-05 1.3E-09 53.7 3.6 25 151-175 23-47 (62)
485 smart00487 DEXDc DEAD-like hel 97.6 0.00028 6.2E-09 60.7 8.5 125 138-262 10-143 (201)
486 PRK14722 flhF flagellar biosyn 97.6 0.00018 3.8E-09 69.8 7.7 60 147-206 133-195 (374)
487 KOG0065|consensus 97.6 3.7E-05 8E-10 83.3 2.6 119 139-257 129-287 (1391)
488 PF00270 DEAD: DEAD/DEAH box h 97.6 0.0003 6.6E-09 59.8 7.8 123 140-263 3-134 (169)
489 PRK11057 ATP-dependent DNA hel 97.5 0.00071 1.5E-08 70.2 11.4 28 298-325 287-314 (607)
490 PRK03918 chromosome segregatio 97.5 0.00011 2.3E-09 79.4 5.2 74 226-321 784-867 (880)
491 PF00448 SRP54: SRP54-type pro 97.5 0.0004 8.6E-09 61.6 7.8 56 152-208 2-59 (196)
492 PRK11057 ATP-dependent DNA hel 97.5 0.00012 2.7E-09 75.8 4.9 73 1-82 242-314 (607)
493 TIGR00235 udk uridine kinase. 97.4 0.00011 2.3E-09 65.6 3.3 28 149-176 4-31 (207)
494 TIGR03499 FlhF flagellar biosy 97.4 0.00053 1.1E-08 64.3 7.9 54 150-203 193-249 (282)
495 PRK06067 flagellar accessory p 97.4 0.00043 9.3E-09 62.9 7.1 111 141-257 14-129 (234)
496 PRK09270 nucleoside triphospha 97.4 0.0002 4.4E-09 64.9 4.9 45 137-182 19-63 (229)
497 PRK01156 chromosome segregatio 97.4 0.00018 3.8E-09 78.0 5.2 81 226-328 797-892 (895)
498 PRK10078 ribose 1,5-bisphospho 97.4 0.00014 3E-09 63.7 3.6 26 151-176 2-27 (186)
499 PRK01172 ski2-like helicase; P 97.4 0.00052 1.1E-08 72.1 8.4 122 136-260 22-147 (674)
500 cd01129 PulE-GspE PulE/GspE Th 97.4 0.0011 2.4E-08 61.5 9.6 40 150-189 79-118 (264)
No 1
>KOG0922|consensus
Probab=100.00 E-value=9.7e-57 Score=440.77 Aligned_cols=243 Identities=64% Similarity=0.968 Sum_probs=223.2
Q ss_pred cchhhhhcCCCccccCCccchhHHhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 106 PEWKKHVIGGKKSSFGKKTNLTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 106 ~~~rr~~~~~k~~~~~~~~~~~i~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
++|.++... ....+++.....+.++|.+|||++++++|+.+++++++++|+|+|||||||++|+++...++..+|.|.|
T Consensus 22 ~~~~~~~~~-~~~~~~~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~ 100 (674)
T KOG0922|consen 22 PEWKGAVPN-GAQSYGKSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIAC 100 (674)
T ss_pred chhcccccc-cccccccccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEe
Confidence 444444332 2234455566778999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 186 TQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 186 ~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
+||||++++++++++|.++++.+|+.|||.++|++..+.++++++||+||++|.++.++++.+|++||+||+|||+++||
T Consensus 101 TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TD 180 (674)
T KOG0922|consen 101 TQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTD 180 (674)
T ss_pred ecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChh----------------------HHHhhhh----------cCcccceeccCCccc--------------------
Q psy9590 266 VLFDPT----------------------KLSKFKK----------NQRLEPLYNKYEEPN-------------------- 293 (350)
Q Consensus 266 ~ll~~l----------------------~~~~~~~----------~~~v~~~~~~~~~~~-------------------- 293 (350)
+|+|+| +|++||+ +|||+++|.+.+...
T Consensus 181 iLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GD 260 (674)
T KOG0922|consen 181 ILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGD 260 (674)
T ss_pred HHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCC
Confidence 999998 9999998 899999999866440
Q ss_pred ---------------------------cc-------------------------ceeEEEEEecccccccccCCEEEEEe
Q psy9590 294 ---------------------------AW-------------------------RISRVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 294 ---------------------------~~-------------------------~~~~vi~sT~iae~s~ti~d~~~vid 321 (350)
.| +.||||+||||||||+||+|++||||
T Consensus 261 ILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVD 340 (674)
T KOG0922|consen 261 ILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVD 340 (674)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEc
Confidence 00 23999999999999999999999999
Q ss_pred CCeeeeEeeecCCCcceeeEeecccCCC
Q psy9590 322 PGFVKQKVYNSKTGMDSLVVTPISQDGH 349 (350)
Q Consensus 322 ~G~~~~~~~~~~~~~~~l~~~~is~~~a 349 (350)
+|++|++.|||++|++.|...|||||||
T Consensus 341 sG~vK~~~y~p~~g~~~L~v~~ISkasA 368 (674)
T KOG0922|consen 341 SGFVKQKKYNPRTGLDSLIVVPISKASA 368 (674)
T ss_pred CCceEEEeeccccCccceeEEechHHHH
Confidence 9999999999999999999999999998
No 2
>KOG0923|consensus
Probab=100.00 E-value=8.7e-54 Score=416.57 Aligned_cols=224 Identities=65% Similarity=0.998 Sum_probs=213.1
Q ss_pred hhHHhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcE-EEEcCCcchhhhhHHHHHHHHh
Q psy9590 126 LTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGK-IGCTQPRRVAAMSVAKRVAEEF 204 (350)
Q Consensus 126 ~~i~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~-i~~~~~~~i~~~~~~~~v~~~~ 204 (350)
..+.+.|++|||++++++++.+|+.++++.|+|++|||||||+||++.+.++..+|. |.|+||||+++++++.++|+++
T Consensus 255 ~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 255 ESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHh
Confidence 357888999999999999999999999999999999999999999999999998898 9999999999999999999999
Q ss_pred cccccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh-------------
Q psy9590 205 GCRLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT------------- 271 (350)
Q Consensus 205 ~~~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l------------- 271 (350)
|+.+|.+|||.++|+++.+.++.+++|++||+.|..+..+.+..|++||+||+|||+++||+|++++
T Consensus 335 gvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKll 414 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLL 414 (902)
T ss_pred CcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEE
Confidence 9999999999999999999899999999999999999999999999999999999999999999887
Q ss_pred ---------HHHhhhh----------cCcccceeccCCccc---------------------------------------
Q psy9590 272 ---------KLSKFKK----------NQRLEPLYNKYEEPN--------------------------------------- 293 (350)
Q Consensus 272 ---------~~~~~~~----------~~~v~~~~~~~~~~~--------------------------------------- 293 (350)
+|+.||+ .|||+++|.+.++.+
T Consensus 415 IsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~ 494 (902)
T KOG0923|consen 415 ISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLK 494 (902)
T ss_pred eeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHH
Confidence 9999998 899999998877540
Q ss_pred --------------cc--------------------ceeEEEEEecccccccccCCEEEEEeCCeeeeEeeecCCCccee
Q psy9590 294 --------------AW--------------------RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSL 339 (350)
Q Consensus 294 --------------~~--------------------~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~~~~~~~l 339 (350)
.| +.||||+||||||||+||+|++||||+|++|++.|||++||.+|
T Consensus 495 ~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL 574 (902)
T KOG0923|consen 495 ERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESL 574 (902)
T ss_pred HHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeE
Confidence 00 22999999999999999999999999999999999999999999
Q ss_pred eEeecccCCC
Q psy9590 340 VVTPISQDGH 349 (350)
Q Consensus 340 ~~~~is~~~a 349 (350)
.+.|||||||
T Consensus 575 ~v~piSKAsA 584 (902)
T KOG0923|consen 575 LVTPISKASA 584 (902)
T ss_pred EEeeechhhh
Confidence 9999999998
No 3
>KOG0924|consensus
Probab=100.00 E-value=3.3e-51 Score=399.27 Aligned_cols=223 Identities=56% Similarity=0.906 Sum_probs=213.5
Q ss_pred hHHhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcc
Q psy9590 127 TIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGC 206 (350)
Q Consensus 127 ~i~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~ 206 (350)
.+.++|+.||++..+++++..|+.|++++|+|++||||||++++++.+.++...|-|.|+|||++++++++++++.+++.
T Consensus 347 ~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 347 SIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred hHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh---------------
Q psy9590 207 RLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT--------------- 271 (350)
Q Consensus 207 ~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l--------------- 271 (350)
.+|..|||.++|++..+.++.|+||+.|.++|..|.+.++.+|++|||||+|||+++||+|+|++
T Consensus 427 ~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVt 506 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVT 506 (1042)
T ss_pred ccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -------HHHhhhh----------cCcccceeccCCccc---------------------------------cc------
Q psy9590 272 -------KLSKFKK----------NQRLEPLYNKYEEPN---------------------------------AW------ 295 (350)
Q Consensus 272 -------~~~~~~~----------~~~v~~~~~~~~~~~---------------------------------~~------ 295 (350)
+|++||| +|||+..|.+.+.+. .|
T Consensus 507 SATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~ 586 (1042)
T KOG0924|consen 507 SATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEK 586 (1042)
T ss_pred eccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHH
Confidence 9999999 899999998877540 00
Q ss_pred -----------------------------------ceeEEEEEecccccccccCCEEEEEeCCeeeeEeeecCCCcceee
Q psy9590 296 -----------------------------------RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLV 340 (350)
Q Consensus 296 -----------------------------------~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~~~~~~~l~ 340 (350)
++||||+||||||||+||+|+.||||+|++|.++|||+.||+.|+
T Consensus 587 l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~ 666 (1042)
T KOG0924|consen 587 LEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQ 666 (1042)
T ss_pred HHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeE
Confidence 349999999999999999999999999999999999999999999
Q ss_pred EeecccCCC
Q psy9590 341 VTPISQDGH 349 (350)
Q Consensus 341 ~~~is~~~a 349 (350)
+.|||+|+|
T Consensus 667 ~~pIS~AnA 675 (1042)
T KOG0924|consen 667 IVPISQANA 675 (1042)
T ss_pred EEechhccc
Confidence 999999998
No 4
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.3e-48 Score=396.51 Aligned_cols=224 Identities=50% Similarity=0.773 Sum_probs=210.5
Q ss_pred hhHHhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhc
Q psy9590 126 LTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFG 205 (350)
Q Consensus 126 ~~i~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~ 205 (350)
..+.+.+..||+++.+++|+.+++++++++|.|++||||||++|+++...++...|.|.|+||||++++++++++|++++
T Consensus 40 ~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~ 119 (845)
T COG1643 40 PDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELG 119 (845)
T ss_pred chhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhC
Confidence 34678899999999999999999999999999999999999999999999887789999999999999999999999999
Q ss_pred ccccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh--------------
Q psy9590 206 CRLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT-------------- 271 (350)
Q Consensus 206 ~~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l-------------- 271 (350)
++.|+.|||.++|++..+.++++++||.|++.|.++.+.++.+++++|+||+|||++++|++|+++
T Consensus 120 ~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiI 199 (845)
T COG1643 120 EKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLI 199 (845)
T ss_pred CCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------HHHhhhh----------cCcccceeccCCcccc--------------------------------------
Q psy9590 272 ---------KLSKFKK----------NQRLEPLYNKYEEPNA-------------------------------------- 294 (350)
Q Consensus 272 ---------~~~~~~~----------~~~v~~~~~~~~~~~~-------------------------------------- 294 (350)
+|++||+ +|||+++|.+.....-
T Consensus 200 imSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L 279 (845)
T COG1643 200 IMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWL 279 (845)
T ss_pred EEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHH
Confidence 8999999 8999999976553200
Q ss_pred -----------c--------------------ceeEEEEEecccccccccCCEEEEEeCCeeeeEeeecCCCcceeeEee
Q psy9590 295 -----------W--------------------RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTP 343 (350)
Q Consensus 295 -----------~--------------------~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~~~~~~~l~~~~ 343 (350)
| +.||||+||||||||+||+|++||||+|+.|+++||+++|+.+|.+.|
T Consensus 280 ~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ 359 (845)
T COG1643 280 EKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEP 359 (845)
T ss_pred HhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEE
Confidence 0 117899999999999999999999999999999999999999999999
Q ss_pred cccCCC
Q psy9590 344 ISQDGH 349 (350)
Q Consensus 344 is~~~a 349 (350)
||||||
T Consensus 360 ISqAsA 365 (845)
T COG1643 360 ISKASA 365 (845)
T ss_pred echhhh
Confidence 999998
No 5
>KOG0925|consensus
Probab=100.00 E-value=4.5e-48 Score=366.07 Aligned_cols=225 Identities=54% Similarity=0.867 Sum_probs=211.8
Q ss_pred chhHHhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHh
Q psy9590 125 NLTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEF 204 (350)
Q Consensus 125 ~~~i~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~ 204 (350)
+..+.+.|..||+|..+.++++.+.++|+++++|++||||||++|+++..+..+..+.|.|+||+++++++++.++|+++
T Consensus 36 Y~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEM 115 (699)
T KOG0925|consen 36 YYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEM 115 (699)
T ss_pred HHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999988766656889999999999999999999999
Q ss_pred cccccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh-------------
Q psy9590 205 GCRLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT------------- 271 (350)
Q Consensus 205 ~~~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l------------- 271 (350)
....|++|||.++|+++.+.++..++|++||++|.++.+.++..+++|||||+|||++.||+|+|++
T Consensus 116 Dv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~v 195 (699)
T KOG0925|consen 116 DVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLV 195 (699)
T ss_pred ccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------HHHhhhh---------cCcccceeccCCcc---------------------------------ccc-----
Q psy9590 272 ---------KLSKFKK---------NQRLEPLYNKYEEP---------------------------------NAW----- 295 (350)
Q Consensus 272 ---------~~~~~~~---------~~~v~~~~~~~~~~---------------------------------~~~----- 295 (350)
+|.+||+ ++|++++|.+++.. ..|
T Consensus 196 vmSatl~a~Kfq~yf~n~Pll~vpg~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~r 275 (699)
T KOG0925|consen 196 VMSATLDAEKFQRYFGNAPLLAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISR 275 (699)
T ss_pred EeecccchHHHHHHhCCCCeeecCCCCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHH
Confidence 9999998 89999999887754 001
Q ss_pred -----------------------ce-------------eEEEEEecccccccccCCEEEEEeCCeeeeEeeecCCCccee
Q psy9590 296 -----------------------RI-------------SRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSL 339 (350)
Q Consensus 296 -----------------------~~-------------~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~~~~~~~l 339 (350)
++ ||||++||+||+|+||++++||||+|+.|+++|||+.++++|
T Consensus 276 e~~~L~~~~g~l~v~PLyP~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesl 355 (699)
T KOG0925|consen 276 EVDNLGPQVGPLKVVPLYPAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESL 355 (699)
T ss_pred HHHhhccccCCceEEecCchhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeee
Confidence 11 999999999999999999999999999999999999999999
Q ss_pred eEeecccCCC
Q psy9590 340 VVTPISQDGH 349 (350)
Q Consensus 340 ~~~~is~~~a 349 (350)
...|||||||
T Consensus 356 lv~PISkasA 365 (699)
T KOG0925|consen 356 LVSPISKASA 365 (699)
T ss_pred eeccchHhHH
Confidence 9999999998
No 6
>KOG0926|consensus
Probab=100.00 E-value=4.7e-43 Score=347.03 Aligned_cols=145 Identities=54% Similarity=0.835 Sum_probs=138.5
Q ss_pred hhHHhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCC-----CcEEEEcCCcchhhhhHHHHH
Q psy9590 126 LTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTA-----RGKIGCTQPRRVAAMSVAKRV 200 (350)
Q Consensus 126 ~~i~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~-----~G~i~~~~~~~i~~~~~~~~v 200 (350)
.++.+.|..|||+.-.+.|.++|+.|.+++|.|++||||||++||++.+.++.. .|-|.+++|||++++..++++
T Consensus 246 ~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRV 325 (1172)
T KOG0926|consen 246 AEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRV 325 (1172)
T ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999887653 578999999999999999999
Q ss_pred HHHhcccccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 201 AEEFGCRLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 201 ~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
+.+++. .+..|+|.++|++....++.|++|++|.++|.+-.+.|+.+|++||+||+|||+++||+|+|+|
T Consensus 326 a~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmL 395 (1172)
T KOG0926|consen 326 AFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGML 395 (1172)
T ss_pred HHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHH
Confidence 999998 8899999999999999999999999999999999999999999999999999999999999988
No 7
>KOG0920|consensus
Probab=100.00 E-value=2.6e-42 Score=354.78 Aligned_cols=320 Identities=30% Similarity=0.418 Sum_probs=252.7
Q ss_pred CeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCCceeeeeeeccccccccccccCCCCccc
Q psy9590 28 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPE 107 (350)
Q Consensus 28 ~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g~~k~~~~~~~~~~~~l~~~~iSk~~~~ 107 (350)
....-+.+++ ..+++...++..-++.+++...+++++-..+..+. +.++.+.....+......-..+...|..+....
T Consensus 23 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (924)
T KOG0920|consen 23 DSHAWLRDSS-SSKEMTDDDEVIRALTQSRLPKNLLEKLIQIARSS-STAKNLMKFHTVSKITEPSRLLDLSPKPMTLQA 100 (924)
T ss_pred cccccccCcc-ccccccCcceeehhccccCcccccchHHHHHHHhh-hhhhhcccceeeeccCCCCceeeecccccchhh
Confidence 4555667777 77777777777777889999999999999999888 887776655444433332222222222211110
Q ss_pred hhhhhcCCC-------------------cc------------------ccC-----C--ccchhHHhhhccchhHHHHHH
Q psy9590 108 WKKHVIGGK-------------------KS------------------SFG-----K--KTNLTIVEQRQSLPIYKLKHE 143 (350)
Q Consensus 108 ~rr~~~~~k-------------------~~------------------~~~-----~--~~~~~i~~~r~~lpi~~~~~~ 143 (350)
..+....+. .. ... . ..+..+.+.|.+||++..++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~s~~~~~~~~~s~~~~~~~~~R~~LPa~~~r~~ 180 (924)
T KOG0920|consen 101 KLKLKAEAENKAAALVCKLLESLKLVDRNNENLLLPTTGQKDEPLLKKSISRQSEPKKSESYKEMLRFRESLPAYKMRDT 180 (924)
T ss_pred hheecccccchhHHHHHHHHHHhccCCCcccccccccccccccccCcchhhhhchhhhhhHHHHHHHHHHhCccHHHHHH
Confidence 000000000 00 000 0 112346778999999999999
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC--CCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccC
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT--ARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDC 221 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~--~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~ 221 (350)
|+..+++++++.|.|++||||||++|+++...... ...+|.|+||||+++++++++++.+++...+..|||.++..+.
T Consensus 181 Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~ 260 (924)
T KOG0920|consen 181 ILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESK 260 (924)
T ss_pred HHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecc
Confidence 99999999999999999999999999999865222 3458999999999999999999999999999999999999998
Q ss_pred CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh----------------------HHHhhhh-
Q psy9590 222 TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT----------------------KLSKFKK- 278 (350)
Q Consensus 222 ~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l----------------------~~~~~~~- 278 (350)
.+..+++.++|.|.+.|.++.++.+.+..+||+||.|||+.++|+||.++ .|++||+
T Consensus 261 ~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~ 340 (924)
T KOG0920|consen 261 RSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYFGG 340 (924)
T ss_pred cCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHhCC
Confidence 88889999999999999999999999999999999999999999998766 8999999
Q ss_pred ---------cCcccceeccCCcc-----------------c-------------------------cc------------
Q psy9590 279 ---------NQRLEPLYNKYEEP-----------------N-------------------------AW------------ 295 (350)
Q Consensus 279 ---------~~~v~~~~~~~~~~-----------------~-------------------------~~------------ 295 (350)
+||+..+|.++... + ++
T Consensus 341 ~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFL 420 (924)
T KOG0920|consen 341 CPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFL 420 (924)
T ss_pred CceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEc
Confidence 78887776532110 0 00
Q ss_pred ------------------------------------------------ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 296 ------------------------------------------------RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 296 ------------------------------------------------~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
++||||+||||||||+||+|++||||+|+.|+
T Consensus 421 PG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke 500 (924)
T KOG0920|consen 421 PGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKE 500 (924)
T ss_pred CCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeee
Confidence 23999999999999999999999999999999
Q ss_pred EeeecCCCcceeeEeecccCCC
Q psy9590 328 KVYNSKTGMDSLVVTPISQDGH 349 (350)
Q Consensus 328 ~~~~~~~~~~~l~~~~is~~~a 349 (350)
++|||.++++.|...|||||+|
T Consensus 501 ~~yD~~~~~s~l~~~wvSkAna 522 (924)
T KOG0920|consen 501 KSYDPERKVSCLLLSWVSKANA 522 (924)
T ss_pred eeecccCCcchhheeeccccch
Confidence 9999999999999999999998
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.8e-37 Score=328.82 Aligned_cols=221 Identities=43% Similarity=0.667 Sum_probs=199.9
Q ss_pred HhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccc
Q psy9590 129 VEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRL 208 (350)
Q Consensus 129 ~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~ 208 (350)
..++.+||+++.+++|+.++..+++++|.|++||||||++|+++...+....|.|.|+||+++++++++.+++.+++...
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 45667899999999999999999999999999999999999999887666678999999999999999999999999999
Q ss_pred cchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh-----------------
Q psy9590 209 GQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT----------------- 271 (350)
Q Consensus 209 ~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l----------------- 271 (350)
|..|||.+++.+..+.+++++++|.|++.+....+.++.++++||+||+|||++++|++++++
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSA 219 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSA 219 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeC
Confidence 999999999999988889999999999999999999999999999999999999999998755
Q ss_pred -----HHHhhhh----------cCcccceeccCCc-------c------------------cc-----------------
Q psy9590 272 -----KLSKFKK----------NQRLEPLYNKYEE-------P------------------NA----------------- 294 (350)
Q Consensus 272 -----~~~~~~~----------~~~v~~~~~~~~~-------~------------------~~----------------- 294 (350)
+|++||+ .||++.+|.+... . ..
T Consensus 220 Tld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L 299 (1283)
T TIGR01967 220 TIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEIL 299 (1283)
T ss_pred CcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHH
Confidence 7888886 6888887754210 0 00
Q ss_pred -------c---------------------ceeEEEEEecccccccccCCEEEEEeCCeeeeEeeecCCCcceeeEeeccc
Q psy9590 295 -------W---------------------RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQ 346 (350)
Q Consensus 295 -------~---------------------~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~~~~~~~l~~~~is~ 346 (350)
+ +.++||+|||+||+|+||+|+.||||+|+.|+++||+++|++.|.+.||||
T Consensus 300 ~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISk 379 (1283)
T TIGR01967 300 RKRNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQ 379 (1283)
T ss_pred HhcCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCH
Confidence 0 117999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy9590 347 DGH 349 (350)
Q Consensus 347 ~~a 349 (350)
|+|
T Consensus 380 asa 382 (1283)
T TIGR01967 380 ASA 382 (1283)
T ss_pred HHH
Confidence 986
No 9
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.5e-36 Score=319.69 Aligned_cols=221 Identities=43% Similarity=0.659 Sum_probs=197.8
Q ss_pred HhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccc
Q psy9590 129 VEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRL 208 (350)
Q Consensus 129 ~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~ 208 (350)
.+.+.+|||++.+++|+..+..+++++|.|+|||||||++|+++...+....|.|.|+||+++++++++.+++.+++...
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 34678899999999999999999999999999999999999999877665578999999999999999999999999999
Q ss_pred cchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh-----------------
Q psy9590 209 GQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT----------------- 271 (350)
Q Consensus 209 ~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l----------------- 271 (350)
|..+||.+++.+..+.++.|.++|.|.+.+....+.++.++++||+||+|||++++|++++.+
T Consensus 147 G~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSA 226 (1294)
T PRK11131 147 GGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSA 226 (1294)
T ss_pred cceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeC
Confidence 999999999988887789999999999999999899999999999999999999999998755
Q ss_pred -----HHHhhhh----------cCcccceeccCCcc--------------------------------------------
Q psy9590 272 -----KLSKFKK----------NQRLEPLYNKYEEP-------------------------------------------- 292 (350)
Q Consensus 272 -----~~~~~~~----------~~~v~~~~~~~~~~-------------------------------------------- 292 (350)
+|++||+ .||++.+|.+....
T Consensus 227 Tid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L 306 (1294)
T PRK11131 227 TIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADAL 306 (1294)
T ss_pred CCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHH
Confidence 7788886 57888777643210
Q ss_pred ---cc-----c------------------ceeEEEEEecccccccccCCEEEEEeCCeeeeEeeecCCCcceeeEeeccc
Q psy9590 293 ---NA-----W------------------RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQ 346 (350)
Q Consensus 293 ---~~-----~------------------~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~~~~~~~l~~~~is~ 346 (350)
.. . +.++||+|||+||+|+||+|+.||||+|++|+++||++++++.|...||||
T Consensus 307 ~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSk 386 (1294)
T PRK11131 307 NKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQ 386 (1294)
T ss_pred HhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCH
Confidence 00 0 127999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy9590 347 DGH 349 (350)
Q Consensus 347 ~~a 349 (350)
++|
T Consensus 387 asa 389 (1294)
T PRK11131 387 ASA 389 (1294)
T ss_pred hhH
Confidence 987
No 10
>KOG0923|consensus
Probab=100.00 E-value=1.7e-35 Score=289.02 Aligned_cols=168 Identities=46% Similarity=0.666 Sum_probs=137.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|||||+||+.+.+.|.+.+..++..-+++.|+|+|++||.+.|+++|+|.|+|.|||||||||||||||||||.||||+|
T Consensus 479 FltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpG 558 (902)
T KOG0923|consen 479 FLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPG 558 (902)
T ss_pred EeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeeccccccccccccCCCCccchhhhhcCCCccccCCccchh-------------HH-hhhccch--hHHHHHHH
Q psy9590 81 FVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKKSSFGKKTNLT-------------IV-EQRQSLP--IYKLKHEL 144 (350)
Q Consensus 81 ~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~~~~~~~~~~~-------------i~-~~r~~lp--i~~~~~~i 144 (350)
|+|++.|||++||++|.+.||||+++.||.+++|+. +.|+|+++. ++ -+|.+|. ++.++
T Consensus 559 f~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRt--gPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~Lk--- 633 (902)
T KOG0923|consen 559 FVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRT--GPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLK--- 633 (902)
T ss_pred cccccCcCCCcCceeEEEeeechhhhhhhccccCCC--CCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHH---
Confidence 999999999999999999999999999999999854 557776541 11 2566665 23333
Q ss_pred HHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 145 IKAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 145 ~~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
++.-++++-+-=-.-.+-.||++.+-.++
T Consensus 634 --SLGI~Dl~~FdFmDpPp~etL~~aLE~Ly 662 (902)
T KOG0923|consen 634 --SLGIHDLIHFDFLDPPPTETLLKALEQLY 662 (902)
T ss_pred --hcCcchhcccccCCCCChHHHHHHHHHHH
Confidence 33333433332223344578877655443
No 11
>KOG0922|consensus
Probab=100.00 E-value=2.2e-35 Score=290.43 Aligned_cols=123 Identities=60% Similarity=0.928 Sum_probs=115.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|||||+||+.+|+.|.+.+.+++.+.+. .++|+||+||.++|.+||.|+|+|.||||+||||||||+|||||+||||||
T Consensus 264 FLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG 342 (674)
T KOG0922|consen 264 FLTGQEEIEAACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSG 342 (674)
T ss_pred EeCCHHHHHHHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCC
Confidence 9999999999999999999888877776 999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeeccccccccccccCCCCccchhhhhcCCCccccCCccch
Q psy9590 81 FVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKKSSFGKKTNL 126 (350)
Q Consensus 81 ~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~~~~~~~~~~ 126 (350)
++|++.|||++|+++|.+.||||+++.||.+++|+.. .|+|+++
T Consensus 343 ~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~--pGkcyRL 386 (674)
T KOG0922|consen 343 FVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG--PGKCYRL 386 (674)
T ss_pred ceEEEeeccccCccceeEEechHHHHhhhcccCCCCC--CceEEEe
Confidence 9999999999999999999999999999999998653 3566544
No 12
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=1.1e-32 Score=287.97 Aligned_cols=214 Identities=35% Similarity=0.484 Sum_probs=188.0
Q ss_pred chhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhh
Q psy9590 135 LPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGY 214 (350)
Q Consensus 135 lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~ 214 (350)
|||+.++++|+..+.+++.+++.|++||||||++++.+.... ..+++|.+.+|+++++.+.+.+++.+++...+..|||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~-~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP-GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh-ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 799999999999999999999999999999999998877553 2367999999999999999999999999988999999
Q ss_pred hhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh-----------------------
Q psy9590 215 TIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT----------------------- 271 (350)
Q Consensus 215 ~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l----------------------- 271 (350)
.+++.+..+.++++..+|.|...+....+..+.++++||+||.|||++++|++++++
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 999888777778999999999999988888999999999999999999999876554
Q ss_pred HHHhhhh----------cCcccceeccCCcc----------------------------------------c----cc--
Q psy9590 272 KLSKFKK----------NQRLEPLYNKYEEP----------------------------------------N----AW-- 295 (350)
Q Consensus 272 ~~~~~~~----------~~~v~~~~~~~~~~----------------------------------------~----~~-- 295 (350)
.|.+||+ .||++.+|...... . ..
T Consensus 160 ~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v 239 (819)
T TIGR01970 160 RLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLI 239 (819)
T ss_pred HHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEE
Confidence 5677775 56777777543210 0 00
Q ss_pred ---------------------ceeEEEEEecccccccccCCEEEEEeCCeeeeEeeecCCCcceeeEeecccCCC
Q psy9590 296 ---------------------RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDGH 349 (350)
Q Consensus 296 ---------------------~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~~~~~~~l~~~~is~~~a 349 (350)
+.++||+|||+||+++||+|+.||||+|+.++++||+.+|++.|.+.|||||||
T Consensus 240 ~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa 314 (819)
T TIGR01970 240 CPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASA 314 (819)
T ss_pred EEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHH
Confidence 127999999999999999999999999999999999999999999999999987
No 13
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.98 E-value=4.5e-32 Score=283.70 Aligned_cols=215 Identities=36% Similarity=0.524 Sum_probs=188.7
Q ss_pred cchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhh
Q psy9590 134 SLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVG 213 (350)
Q Consensus 134 ~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~ 213 (350)
.|||+.++++|++++.+++.+++.|++||||||++++.+..... ..|+|.+.+|++.++.+.+++++.+++...+..++
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 59999999999999999999999999999999999987775533 35799999999999999999999999998999999
Q ss_pred hhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh----------------------
Q psy9590 214 YTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT---------------------- 271 (350)
Q Consensus 214 ~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l---------------------- 271 (350)
|.+++.+....++++..+|.|...+....+..+.+.++||+||.|||++++|++++++
T Consensus 82 y~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 82 YRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred EEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 9998887777778999999999999888888899999999999999999999987654
Q ss_pred -HHHhhhh----------cCcccceeccCCcc----------------------------------------c----cc-
Q psy9590 272 -KLSKFKK----------NQRLEPLYNKYEEP----------------------------------------N----AW- 295 (350)
Q Consensus 272 -~~~~~~~----------~~~v~~~~~~~~~~----------------------------------------~----~~- 295 (350)
.|.+||+ .||++.+|...... . .+
T Consensus 162 ~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~ 241 (812)
T PRK11664 162 DRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVL 241 (812)
T ss_pred HHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCce
Confidence 5677775 56777777533211 0 00
Q ss_pred ----------------------ceeEEEEEecccccccccCCEEEEEeCCeeeeEeeecCCCcceeeEeecccCCC
Q psy9590 296 ----------------------RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDGH 349 (350)
Q Consensus 296 ----------------------~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~~~~~~~l~~~~is~~~a 349 (350)
+.++||+|||++|+++||+|+.||||+|+.++++|||.+|++.|.+.|||||+|
T Consensus 242 v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa 317 (812)
T PRK11664 242 LCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASM 317 (812)
T ss_pred EEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhh
Confidence 127999999999999999999999999999999999999999999999999987
No 14
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1e-31 Score=277.62 Aligned_cols=119 Identities=47% Similarity=0.701 Sum_probs=108.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
||||++||+++++.|++ ..++ +++.|+||||.|+.++|.+||+|.|.|+||||+||||||||||||||+||||||
T Consensus 265 FLpG~~EI~~~~~~L~~--~~l~---~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG 339 (845)
T COG1643 265 FLPGQREIERTAEWLEK--AELG---DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSG 339 (845)
T ss_pred ECCcHHHHHHHHHHHHh--cccc---CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCC
Confidence 99999999999999986 1121 579999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeeccccccccccccCCCCccchhhhhcCCCccccCCccch
Q psy9590 81 FVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKKSSFGKKTNL 126 (350)
Q Consensus 81 ~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~~~~~~~~~~ 126 (350)
+.|+++||+++|+++|.+.||||+++.||.+++|+. ..|.|+++
T Consensus 340 ~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~--~pGicyRL 383 (845)
T COG1643 340 LAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT--GPGICYRL 383 (845)
T ss_pred cccccccccccCceeeeEEEechhhhhhhccccccC--CCceEEEe
Confidence 999999999999999999999999999999999865 34566554
No 15
>KOG0924|consensus
Probab=99.97 E-value=3.2e-31 Score=259.63 Aligned_cols=116 Identities=46% Similarity=0.812 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCC-CCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPD-VPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 79 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~-~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~ 79 (350)
|+||+++|+.+|..+.+.+..+... ...|.|||+||.||.+.|.++|+++|.|.||||+||||||||+|||||+|||||
T Consensus 569 fmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~ 648 (1042)
T KOG0924|consen 569 FMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDT 648 (1042)
T ss_pred ecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEec
Confidence 8999999999999999887655322 247999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeeeccccccccccccCCCCccchhhhhcCCC
Q psy9590 80 GFVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGK 116 (350)
Q Consensus 80 g~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k 116 (350)
|++|.++|||++||++|++.|||++++.||.+++|+.
T Consensus 649 Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt 685 (1042)
T KOG0924|consen 649 GYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRT 685 (1042)
T ss_pred CceeeeecccccccceeEEEechhccchhhccccCCC
Confidence 9999999999999999999999999888888888755
No 16
>KOG0925|consensus
Probab=99.96 E-value=2.6e-29 Score=238.83 Aligned_cols=119 Identities=48% Similarity=0.803 Sum_probs=109.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCC-----CeeEEEEeecccceeeecCeEE
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPG-----SRKVVIATNIAETSLTIDGIFY 75 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~-----~rkvilatniaets~ti~~i~~ 75 (350)
||||++||+.||+.+..+..+++++.+++.|+||| +.+|.++|+|+|.. .||||++|||||||+|||||+|
T Consensus 259 FLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~ 334 (699)
T KOG0925|consen 259 FLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVF 334 (699)
T ss_pred EecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEE
Confidence 99999999999999999999999999999999999 67788999998842 5999999999999999999999
Q ss_pred EeeCCceeeeeeeccccccccccccCCCCccchhhhhcCCCccccCCccc
Q psy9590 76 VVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKKSSFGKKTN 125 (350)
Q Consensus 76 viD~g~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~~~~~~~~~ 125 (350)
|||+|+.|+++||||+++++|.+.||||+++++|++++|+.++ |+|.+
T Consensus 335 VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~p--Gkcfr 382 (699)
T KOG0925|consen 335 VIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP--GKCFR 382 (699)
T ss_pred EecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCC--CceEE
Confidence 9999999999999999999999999999999999999987644 55544
No 17
>KOG0920|consensus
Probab=99.94 E-value=5.9e-28 Score=249.09 Aligned_cols=115 Identities=37% Similarity=0.590 Sum_probs=105.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
||||++||..+.+.|..+... .+..++.++||||+|+.++|+.||..+|+|.||||+||||||||||||+|.||||||
T Consensus 419 FLPG~~eI~~~~~~L~~~~~f--~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG 496 (924)
T KOG0920|consen 419 FLPGWEEILQLKELLEVNLPF--ADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSG 496 (924)
T ss_pred EcCCHHHHHHHHHHhhhcccc--ccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecC
Confidence 999999999999888654321 222579999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeeccccccccccccCCCCccchhhhhcCCCc
Q psy9590 81 FVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKK 117 (350)
Q Consensus 81 ~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~ 117 (350)
++|++.|||..++++|...|+|++++.||++++|+..
T Consensus 497 ~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~ 533 (924)
T KOG0920|consen 497 LVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR 533 (924)
T ss_pred eeeeeeecccCCcchhheeeccccchHHhcccccCcc
Confidence 9999999999999999999999999999999998654
No 18
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.8e-27 Score=208.94 Aligned_cols=168 Identities=14% Similarity=0.163 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc----------------CCcchhhhhHHHH
Q psy9590 136 PIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT----------------QPRRVAAMSVAKR 199 (350)
Q Consensus 136 pi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~----------------~~~~i~~~~~~~~ 199 (350)
+-+.+.+++..++.+||+++|+||+||||||+++.+.|+.. +++|.|.+. ++.-+..+++.++
T Consensus 14 ~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~N 92 (248)
T COG1116 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-PTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDN 92 (248)
T ss_pred CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhh
Confidence 33556788999999999999999999999999999999984 557877553 2223445556666
Q ss_pred HHHHhccc------ccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 200 VAEEFGCR------LGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 200 v~~~~~~~------~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+....... ..+.+...+...+.... +....+||||||||++|||||+.+|++++||||
T Consensus 93 V~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP--------------- 157 (248)
T COG1116 93 VALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP--------------- 157 (248)
T ss_pred heehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC---------------
Confidence 65333221 11233344444444333 467788999999999999999999999999999
Q ss_pred HHhhhh-cCcccceeccCCcccccce--eEEEEEecccccccccCCEEEEEeCC
Q psy9590 273 LSKFKK-NQRLEPLYNKYEEPNAWRI--SRVVIATNIAETSLTIDGIFYVVDPG 323 (350)
Q Consensus 273 ~~~~~~-~~~v~~~~~~~~~~~~~~~--~~vi~sT~iae~s~ti~d~~~vid~G 323 (350)
|+ ...+......+....+|.- .+|++.||+.|+++.++|++||+.++
T Consensus 158 ----FgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 158 ----FGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred ----cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 33 1121111111111112211 68999999999999999999999995
No 19
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.2e-26 Score=199.72 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc------CC-----------------cchhh
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT------QP-----------------RRVAA 193 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~------~~-----------------~~i~~ 193 (350)
..+..+++.+.+++|++++|+|+||+||||+++++..+. .|++|.+.+. +| .++++
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL-~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL-IPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc-cCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 445788999999999999999999999999999999998 4668887553 11 23333
Q ss_pred hhHHHHHHHHhccccc---chhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 194 MSVAKRVAEEFGCRLG---QEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 194 ~~~~~~v~~~~~~~~~---~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.....+++..++.... ..+.......++.. .++++..+|.||+||+.|||||+++|++++||||
T Consensus 93 rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP------------ 160 (245)
T COG4555 93 RENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEP------------ 160 (245)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCC------------
Confidence 3333444544444322 12222222222222 3578889999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCccccc--c--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNAW--R--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~~--~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
..++++.+.....+.+. + -+.||+|||++++...+||++.|+..|.+.
T Consensus 161 ---------~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv 212 (245)
T COG4555 161 ---------TSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212 (245)
T ss_pred ---------CCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE
Confidence 56666655443222111 0 156999999999999999999999999874
No 20
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=3.1e-26 Score=216.73 Aligned_cols=174 Identities=18% Similarity=0.225 Sum_probs=126.4
Q ss_pred ccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------C------------cchhh
Q psy9590 133 QSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------P------------RRVAA 193 (350)
Q Consensus 133 ~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~------------~~i~~ 193 (350)
+++.-..+.+++..+|++||+++|+||+||||||+++++.|+. .+++|+|.+.. | .-+..
T Consensus 13 k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPH 91 (352)
T COG3842 13 KSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-QPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPH 91 (352)
T ss_pred eecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhhcccceeecCcccCCC
Confidence 3444445577889999999999999999999999999999998 46689886631 1 12344
Q ss_pred hhHHHHHHHHhccc-------ccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 194 MSVAKRVAEEFGCR-------LGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 194 ~~~~~~v~~~~~~~-------~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
+++.+++++.+... ..+.+...+........ ++++.+|||||+||++|||||+.+|++++||||
T Consensus 92 ltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP-------- 163 (352)
T COG3842 92 MTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP-------- 163 (352)
T ss_pred CcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc--------
Confidence 66778888765511 11245555555555443 477889999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCcccccce-----eEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI-----SRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
.-.++...+......+.++ .+.|+.||+-|++++++|++.|++.|++.+.
T Consensus 164 -------------lSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~ 218 (352)
T COG3842 164 -------------LSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQV 218 (352)
T ss_pred -------------ccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeec
Confidence 2222222222111111110 4689999999999999999999999999654
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.7e-25 Score=202.62 Aligned_cols=174 Identities=18% Similarity=0.249 Sum_probs=123.5
Q ss_pred hccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cc---------
Q psy9590 132 RQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RR--------- 190 (350)
Q Consensus 132 r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~--------- 190 (350)
.+.++-+...++|...|++||+++|+|||||||||++++|.|+.. ++.|.|.+... ++
T Consensus 9 ~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA 87 (345)
T COG1118 9 KKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA 87 (345)
T ss_pred hhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-CCCceEEECCEeccchhccchhhcceeEEEechh
Confidence 344555566668999999999999999999999999999999984 55888866421 12
Q ss_pred -hhhhhHHHHHHHHhccc--------ccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 191 -VAAMSVAKRVAEEFGCR--------LGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 191 -i~~~~~~~~v~~~~~~~--------~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
+..+++++++|+.+... ....+...++....... +....+|||||+||+++||||+-+|++|+||||
T Consensus 88 LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEP--- 164 (345)
T COG1118 88 LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEP--- 164 (345)
T ss_pred hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCC---
Confidence 22345667777554322 22244444554444433 366779999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcccccce-----eEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI-----SRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
|+ .++...+++....+.++ .++++.||+.|+...++|.++|+++|++.+
T Consensus 165 ----------------f~--ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq 218 (345)
T COG1118 165 ----------------FG--ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218 (345)
T ss_pred ----------------ch--hhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence 22 22222222221111111 468999999999999999999999999754
No 22
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=4.7e-25 Score=192.27 Aligned_cols=174 Identities=14% Similarity=0.146 Sum_probs=117.0
Q ss_pred ccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHH-------Hhc
Q psy9590 133 QSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAE-------EFG 205 (350)
Q Consensus 133 ~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~-------~~~ 205 (350)
+++.-..+.++|..++.+|++++|+||+||||||+++|+.++.. +.+|.|.+... .+........+.. .++
T Consensus 10 K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-~~~G~I~i~g~-~~~~~~~~~~~R~~vGmVFQ~fn 87 (240)
T COG1126 10 KSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-PDSGSITVDGE-DVGDKKDILKLRRKVGMVFQQFN 87 (240)
T ss_pred EEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-CCCceEEECCE-eccchhhHHHHHHhcCeeccccc
Confidence 33444556778899999999999999999999999999999985 55899987431 1111101111111 111
Q ss_pred cccc----c-------------------hhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 206 CRLG----Q-------------------EVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 206 ~~~~----~-------------------~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.... + .....+...+.... +....+|||||+||++|||||+.+|+++++|||
T Consensus 88 LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEP---- 163 (240)
T COG1126 88 LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP---- 163 (240)
T ss_pred ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCC----
Confidence 1000 0 00111111222222 245568999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcccccce----eEEEEEecccccccccCCEEEEEeCCeeeeEe
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI----SRVVIATNIAETSLTIDGIFYVVDPGFVKQKV 329 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~ 329 (350)
+-.+++-...+...-+... -+.++.||.+.++-.++|+++++|.|++.+.-
T Consensus 164 -----------------TSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g 218 (240)
T COG1126 164 -----------------TSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218 (240)
T ss_pred -----------------cccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEec
Confidence 6666665544332211111 46999999999999999999999999876653
No 23
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.9e-25 Score=199.33 Aligned_cols=164 Identities=15% Similarity=0.101 Sum_probs=118.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------cchhhhhHH------------HH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------RRVAAMSVA------------KR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------~~i~~~~~~------------~~ 199 (350)
+.++|..++++|++++|+|||||||||+++.++|+. .+.+|+|.+... .+++++++. +.
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll-~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~ 97 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL-KPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV 97 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence 467788899999999999999999999999999988 456899876432 357777654 22
Q ss_pred HHHHhccc----------ccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 200 VAEEFGCR----------LGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 200 v~~~~~~~----------~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+....... ..+.+...+...+.... ++.+..|||||+||+.|||||+++|++++||||
T Consensus 98 V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP----------- 166 (254)
T COG1121 98 VLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEP----------- 166 (254)
T ss_pred HHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCC-----------
Confidence 22211010 11344445554444443 478899999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
...+|+.-......-+. +=++|++.||+++.....+|.+..++...+
T Consensus 167 ----------~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~ 217 (254)
T COG1121 167 ----------FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI 217 (254)
T ss_pred ----------cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeE
Confidence 44555443322211000 014799999999999999999999986655
No 24
>KOG0926|consensus
Probab=99.90 E-value=6.3e-25 Score=218.76 Aligned_cols=100 Identities=45% Similarity=0.627 Sum_probs=93.1
Q ss_pred CCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCCceeeeeeeccccccccccccCCCC
Q psy9590 25 DVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQD 104 (350)
Q Consensus 25 ~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g~~k~~~~~~~~~~~~l~~~~iSk~ 104 (350)
+..+|.||||||-|+.+.|.+||+++|.|.|=||+|||+||||+|||||+||||||++|++.||..+|+++..+.||||+
T Consensus 601 ~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkA 680 (1172)
T KOG0926|consen 601 SPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKA 680 (1172)
T ss_pred CCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeecc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCCCccccCCccch
Q psy9590 105 LPEWKKHVIGGKKSSFGKKTNL 126 (350)
Q Consensus 105 ~~~~rr~~~~~k~~~~~~~~~~ 126 (350)
++.||.+++|+- +.|.|+++
T Consensus 681 SadQRAGRAGRt--gpGHcYRL 700 (1172)
T KOG0926|consen 681 SADQRAGRAGRT--GPGHCYRL 700 (1172)
T ss_pred ccchhccccCCC--CCCceeeh
Confidence 999999999854 55667654
No 25
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=2.3e-24 Score=202.40 Aligned_cols=168 Identities=16% Similarity=0.200 Sum_probs=123.9
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC--C--------cchhhhh-------------
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ--P--------RRVAAMS------------- 195 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~--~--------~~i~~~~------------- 195 (350)
.+.+++..++++|++++|+|||||||||++++++|+.. +++|+|.+.. + +++++++
T Consensus 19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e 97 (293)
T COG1131 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRE 97 (293)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHH
Confidence 34677888999999999999999999999999999984 5689886642 0 1222222
Q ss_pred HHHHHHHHhccc---ccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 196 VAKRVAEEFGCR---LGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 196 ~~~~v~~~~~~~---~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
..++++..++.. ..+.+...+...+.... +++++.||+|||||+.||.||+++|+++|||||
T Consensus 98 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP-------------- 163 (293)
T COG1131 98 NLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP-------------- 163 (293)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC--------------
Confidence 224445455432 12344455555555442 577999999999999999999999999999999
Q ss_pred HHHhhhhcCcccceeccCCcccc---cce--eEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 272 KLSKFKKNQRLEPLYNKYEEPNA---WRI--SRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~~~~---~~~--~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+.++|+.........+ .+- ++|++|||++++...+||.+++++.|++...
T Consensus 164 -------t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~ 218 (293)
T COG1131 164 -------TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE 218 (293)
T ss_pred -------CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe
Confidence 6666666554433211 111 4799999999999999999999999998543
No 26
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=9.4e-25 Score=194.31 Aligned_cols=169 Identities=17% Similarity=0.238 Sum_probs=118.4
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhh----------hhHH
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAA----------MSVA 197 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~----------~~~~ 197 (350)
.+.+++..+|++|++++++||+||||||+++++.++.. +++|+|.+... +++.| ++++
T Consensus 15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~ 93 (309)
T COG1125 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVA 93 (309)
T ss_pred eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHH
Confidence 45677888999999999999999999999999999984 56899977532 12222 2233
Q ss_pred HHHHHHh---ccc---ccchhhhhhhcccCCC---ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 198 KRVAEEF---GCR---LGQEVGYTIRFEDCTS---SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 198 ~~v~~~~---~~~---~~~~v~~~~~~~~~~~---~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
++++... ++. ..+.+...+...+..+ .++...+|||||+||+.++|||+.+|++|+||||
T Consensus 94 eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEP----------- 162 (309)
T COG1125 94 ENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP----------- 162 (309)
T ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCC-----------
Confidence 4444322 111 1223444444444433 2356678999999999999999999999999999
Q ss_pred ChhHHHhhhh-cCcccceeccCCcccccc-e-eEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKK-NQRLEPLYNKYEEPNAWR-I-SRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~-~~~v~~~~~~~~~~~~~~-~-~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
|+ ..|+...-+++....+-+ . ++||+.||++++++.++|.+.|+|.|++.+
T Consensus 163 --------FgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q 216 (309)
T COG1125 163 --------FGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ 216 (309)
T ss_pred --------ccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEE
Confidence 43 444433322221111100 1 689999999999999999999999999843
No 27
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.5e-24 Score=204.17 Aligned_cols=167 Identities=17% Similarity=0.259 Sum_probs=119.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------C--cch----------hhhhHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------P--RRV----------AAMSVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~--~~i----------~~~~~~~~v 200 (350)
+.+++...+++|++++|+|||||||||+++++.|+.. +++|.|.+.. | |.+ ..+++.+++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Ni 96 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENI 96 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHh
Confidence 4667888999999999999999999999999999985 5589886641 1 222 234566777
Q ss_pred HHHhccc------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHH
Q psy9590 201 AEEFGCR------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKL 273 (350)
Q Consensus 201 ~~~~~~~------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~ 273 (350)
+..+... ....|.......+... .+++...|||||+||+++|||++.+|++++|||| ++
T Consensus 97 af~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP----------lS---- 162 (338)
T COG3839 97 AFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEP----------LS---- 162 (338)
T ss_pred hhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCc----------hh----
Confidence 7654331 1233333333444333 2467889999999999999999999999999999 11
Q ss_pred HhhhhcCcccceeccCCcccccce-----eEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 274 SKFKKNQRLEPLYNKYEEPNAWRI-----SRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
.++...+......+.+. .++|..||+-.++.|++|++.|++.|.+.+.
T Consensus 163 -------nLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~ 215 (338)
T COG3839 163 -------NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQV 215 (338)
T ss_pred -------HhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeec
Confidence 22222221111111111 4689999999999999999999999999654
No 28
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.90 E-value=2.3e-24 Score=195.90 Aligned_cols=165 Identities=13% Similarity=0.115 Sum_probs=112.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--cchhhhhHHHHHHHHhcc---c-------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--RRVAAMSVAKRVAEEFGC---R------- 207 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--~~i~~~~~~~~v~~~~~~---~------- 207 (350)
+.+++..++++|++++|+||||||||||++++.+..+ +.+|.|.+... ..+.....++.++..... .
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d 95 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE 95 (258)
T ss_pred EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEee
Confidence 3567888999999999999999999999999999984 56899977431 111122222222111000 0
Q ss_pred -------------------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 208 -------------------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 208 -------------------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
..+.+...+...+... .++.+..||||||||+.||+||+++|++|+||||
T Consensus 96 ~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEP---------- 165 (258)
T COG1120 96 LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEP---------- 165 (258)
T ss_pred hHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCC----------
Confidence 0012222233333322 2356789999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+|..+.-+..+-.++ -.+||+++|++.-+...||.+++++.|.+.
T Consensus 166 -----------Ts~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~ 218 (258)
T COG1120 166 -----------TSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV 218 (258)
T ss_pred -----------ccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE
Confidence 333443332222211111 156999999999999999999999999884
No 29
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.5e-24 Score=196.73 Aligned_cols=167 Identities=18% Similarity=0.196 Sum_probs=119.3
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch-------------------------hh
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV-------------------------AA 193 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i-------------------------~~ 193 (350)
.+.+++..+|++|+++||+|.+|+|||||++++.++.. |++|+|.+.. ..+ ..
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-PtsG~v~v~G-~di~~l~~~~Lr~~R~~IGMIFQhFnLLss 97 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-PTSGSVFVDG-QDLTALSEAELRQLRQKIGMIFQHFNLLSS 97 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCceEEEcC-EecccCChHHHHHHHhhccEEecccccccc
Confidence 45678889999999999999999999999999999984 5689987642 222 22
Q ss_pred hhHHHHHHHHhcc------cccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 194 MSVAKRVAEEFGC------RLGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 194 ~~~~~~v~~~~~~------~~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
.++.+++|..+.. .....|...+.+.+..+. +....+||||||||++|||||+.+|++|+.|||
T Consensus 98 rTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEa--------- 168 (339)
T COG1135 98 RTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEA--------- 168 (339)
T ss_pred chHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCc---------
Confidence 2333444432211 122344445555555443 356779999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcccccce-----eEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI-----SRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|+.-.+....-+.++ -+|++-||-+|-.-.|||++.|+|.|++.|.
T Consensus 169 ------------TSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 169 ------------TSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred ------------cccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 4444443222111100011 4799999999999999999999999999875
No 30
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=9.4e-24 Score=186.82 Aligned_cols=163 Identities=20% Similarity=0.265 Sum_probs=112.9
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHH--HHHHhcc----------
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKR--VAEEFGC---------- 206 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~--v~~~~~~---------- 206 (350)
.+.+++..++.+|++++|+|++||||||+++++.|+.. +.+|+|.+. ...+..++..+. +...+|.
T Consensus 22 ~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-P~~GeI~i~-G~~i~~ls~~~~~~ir~r~GvlFQ~gALFss 99 (263)
T COG1127 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-PDKGEILID-GEDIPQLSEEELYEIRKRMGVLFQQGALFSS 99 (263)
T ss_pred EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-CCCCeEEEc-CcchhccCHHHHHHHHhheeEEeeccccccc
Confidence 34667888999999999999999999999999999985 558999774 322333332221 1111111
Q ss_pred -cccchhhhhh-------------------hcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 207 -RLGQEVGYTI-------------------RFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 207 -~~~~~v~~~~-------------------~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
...++|.+.+ ...+... .+....+|||||++|++||||++.+|++|++|||
T Consensus 100 ltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEP------- 172 (263)
T COG1127 100 LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP------- 172 (263)
T ss_pred cchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCC-------
Confidence 1112222222 1222222 2245568999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCcc-------cccceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEP-------NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+.+++++-.....+ ..+ -++++.||+.++..+|||+++|+-+|++.
T Consensus 173 --------------tsGLDPI~a~~~~~LI~~L~~~lg--~T~i~VTHDl~s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 173 --------------TSGLDPISAGVIDELIRELNDALG--LTVIMVTHDLDSLLTIADRVAVLADGKVI 225 (263)
T ss_pred --------------CCCCCcchHHHHHHHHHHHHHhhC--CEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence 44444443322111 112 57999999999999999999999999984
No 31
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.89 E-value=1.2e-23 Score=220.30 Aligned_cols=117 Identities=38% Similarity=0.541 Sum_probs=106.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
||||++||+.+++.|.+... .++.++||||+|+.++|.++|.+.+.|.|||||||||||||||||||+||||+|
T Consensus 215 Flpg~~eI~~l~~~L~~~~~------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~G 288 (819)
T TIGR01970 215 FLPGQAEIRRVQEQLAERLD------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSG 288 (819)
T ss_pred EECCHHHHHHHHHHHHhhcC------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcC
Confidence 99999999999999875421 368999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeeccccccccccccCCCCccchhhhhcCCCccccCCccc
Q psy9590 81 FVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKKSSFGKKTN 125 (350)
Q Consensus 81 ~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~~~~~~~~~ 125 (350)
+.|+++|||++|++.|.+.||||+++.+|.+++|+. ..|.|.+
T Consensus 289 l~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~--~~G~cyr 331 (819)
T TIGR01970 289 LARVARFDPKTGITRLETVRISQASATQRAGRAGRL--EPGVCYR 331 (819)
T ss_pred cccccccccccCCceeeEEEECHHHHHhhhhhcCCC--CCCEEEE
Confidence 999999999999999999999999999999999865 3455544
No 32
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=4.5e-24 Score=188.87 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=132.8
Q ss_pred hccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------CcchhhhhHH-------
Q psy9590 132 RQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------PRRVAAMSVA------- 197 (350)
Q Consensus 132 r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~~~i~~~~~~------- 197 (350)
++++.-..+.++|...+++|+++|++|+||+||||.+++++++.. ++.|+|.+.. +.++.+++..
T Consensus 9 tK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~ 87 (300)
T COG4152 9 TKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKM 87 (300)
T ss_pred hhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-ccCceEEEcCcchhhhhhhhcccChhhhccCccC
Confidence 344555566788999999999999999999999999999999984 5589997753 1344444432
Q ss_pred ------HHHHHHhcccc---cchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 198 ------KRVAEEFGCRL---GQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 198 ------~~v~~~~~~~~---~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
.++|...|++. ...+.+.+...+.... .++++.||.|++|++.+..+++++|+++|||||
T Consensus 88 tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP---------- 157 (300)
T COG4152 88 TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP---------- 157 (300)
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC----------
Confidence 44455555532 2345555555555444 488999999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccccc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
|.|..||..-.++...-.... =.+||+|||.+|-...+||.+.+++.|...
T Consensus 158 --------FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V 209 (300)
T COG4152 158 --------FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV 209 (300)
T ss_pred --------ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE
Confidence 667778776655543221111 157999999999999999999999999763
No 33
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.88 E-value=4.6e-23 Score=194.95 Aligned_cols=166 Identities=20% Similarity=0.255 Sum_probs=114.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchhh----------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVAA----------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~~----------~~~~~~ 199 (350)
+.+++..++++|++++|+|||||||||++++++|+.. +++|+|.+... +++++ +++.++
T Consensus 22 ~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~ 100 (306)
T PRK13537 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVREN 100 (306)
T ss_pred EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHH
Confidence 4677888999999999999999999999999999884 55888765310 11121 222233
Q ss_pred HHH---Hhcccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 200 VAE---EFGCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 200 v~~---~~~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+.. .++... ...+...+...+... .++.+..||+||+||++||+||+++|++||||||
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEP--------------- 165 (306)
T PRK13537 101 LLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP--------------- 165 (306)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCC---------------
Confidence 321 112111 112223333333332 3577889999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCcccccc----eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNAWR----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+.+ -.+||++||+.+....+||.+++++.|++..
T Consensus 166 ------t~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~ 218 (306)
T PRK13537 166 ------TTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA 218 (306)
T ss_pred ------CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 555555443322111110 1469999999999999999999999998853
No 34
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.88 E-value=4.9e-23 Score=176.03 Aligned_cols=166 Identities=18% Similarity=0.210 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC------------------------Ccchhhh
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ------------------------PRRVAAM 194 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~------------------------~~~i~~~ 194 (350)
.+.+++...+++|+++-|+||+||||||+++++++.. .++.|+|.+.. -+-+.-.
T Consensus 16 ~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~ 94 (223)
T COG2884 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR 94 (223)
T ss_pred hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-cCCCceEEECCeecccccccccchhhheeeeEeeeccccccc
Confidence 4678899999999999999999999999999999998 45688886631 1112233
Q ss_pred hHHHHHHHHhcc------cccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 195 SVAKRVAEEFGC------RLGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 195 ~~~~~v~~~~~~------~~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
++.+++|..+.. .....|...++..+.... +....+||||++||++||||++++|++||.|||
T Consensus 95 tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEP---------- 164 (223)
T COG2884 95 TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEP---------- 164 (223)
T ss_pred hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCC----------
Confidence 445555544321 123344455555554433 255668999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccccc---ce-eEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAW---RI-SRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~-~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+-.+++-...+...-.. +. .+|++|||+.+..-++.-.+..++.|+..
T Consensus 165 -----------TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~ 216 (223)
T COG2884 165 -----------TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216 (223)
T ss_pred -----------CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEE
Confidence 44555433332211000 11 67999999999999999999999999883
No 35
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.9e-23 Score=198.28 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=114.6
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cch----------hhhhHHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRV----------AAMSVAKRVA 201 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i----------~~~~~~~~v~ 201 (350)
.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+... +.+ ..+++.++++
T Consensus 20 l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~ 98 (356)
T PRK11650 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMA 98 (356)
T ss_pred EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHH
Confidence 456778899999999999999999999999999984 55888865321 111 1234555555
Q ss_pred HHhcc---c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHH
Q psy9590 202 EEFGC---R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLS 274 (350)
Q Consensus 202 ~~~~~---~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~ 274 (350)
..... . ....+...+...+... .++.+..|||||+||++|||||+.+|++|+||||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP----------------- 161 (356)
T PRK11650 99 YGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP----------------- 161 (356)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC-----------------
Confidence 43221 0 1122333333333322 3467789999999999999999999999999999
Q ss_pred hhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 275 KFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
...++..........+. + -.++|++||+.++...++|.+++++.|++.+.
T Consensus 162 ----~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~ 216 (356)
T PRK11650 162 ----LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI 216 (356)
T ss_pred ----cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 33333332221111000 0 14699999999999999999999999999653
No 36
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=7e-23 Score=182.72 Aligned_cols=163 Identities=14% Similarity=0.141 Sum_probs=106.7
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhh-----------------------
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS----------------------- 195 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~----------------------- 195 (350)
.+.+++..++++|++++|+||+|||||||++++.++..+ ++|.+.+.. ..+..++
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g-~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~ 96 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLING-KDLTKLSEKELAKLRRKKIGFVFQNFNLLP 96 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECC-EEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence 346678889999999999999999999999999998854 688876632 2222222
Q ss_pred ---HHHHHHHH---hcccc---cchhhhhhhcccCC-Ccc-ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 196 ---VAKRVAEE---FGCRL---GQEVGYTIRFEDCT-SSE-TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 196 ---~~~~v~~~---~~~~~---~~~v~~~~~~~~~~-~~~-~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
+.+++.-. .+... ...........+.. ... +.+.+|||||+||++|||||+.+|++|+.|||
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEP------- 169 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEP------- 169 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCc-------
Confidence 22222210 01110 00111112222222 122 56789999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
+-.++..-.+....-.. + -.+||++||+.+-+ ..+|+++.+.+|++
T Consensus 170 --------------TgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~dr~i~l~dG~~ 220 (226)
T COG1136 170 --------------TGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-KYADRVIELKDGKI 220 (226)
T ss_pred --------------cccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhCCEEEEEeCCee
Confidence 33333322221111000 0 14699999999987 58999999999983
No 37
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=5.5e-23 Score=197.49 Aligned_cols=166 Identities=16% Similarity=0.213 Sum_probs=116.2
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------C--cch----------hhhhHHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------P--RRV----------AAMSVAKRVA 201 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~--~~i----------~~~~~~~~v~ 201 (350)
.+++..++++|++++|+|||||||||+++++.|+.. +++|+|.+.. + +.+ ..+++.++++
T Consensus 22 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~ 100 (351)
T PRK11432 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVG 100 (351)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHH
Confidence 456778899999999999999999999999999984 5588876531 0 111 1234556665
Q ss_pred HHhcc---c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHH
Q psy9590 202 EEFGC---R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLS 274 (350)
Q Consensus 202 ~~~~~---~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~ 274 (350)
..... . ..+.+...+...+... .++.+..|||||+||++|||||+.+|++++||||
T Consensus 101 ~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP----------------- 163 (351)
T PRK11432 101 YGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP----------------- 163 (351)
T ss_pred HHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC-----------------
Confidence 43221 0 1123333344433332 2466789999999999999999999999999999
Q ss_pred hhhhcCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 275 KFKKNQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
...++..........+.+ -.++|++||+.++...++|.++|++.|++.+.
T Consensus 164 ----~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~ 218 (351)
T PRK11432 164 ----LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI 218 (351)
T ss_pred ----cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 334444333222111110 14699999999999999999999999999653
No 38
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.87 E-value=1e-22 Score=194.83 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=114.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------------chh----------hhh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------------RVA----------AMS 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------------~i~----------~~~ 195 (350)
+.+++..++++|++++|+|+||||||||++++.++.. +++|+|.+.... .++ ..+
T Consensus 20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 3567788899999999999999999999999999984 558888663210 111 122
Q ss_pred HHHHHHHHhc---cc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEEFG---CR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~~~---~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.++++.... .. ..+.+...++..+... .+..+..|||||+||++|||||+.+|++|++|||
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEP----------- 167 (343)
T TIGR02314 99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEA----------- 167 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC-----------
Confidence 3344433211 10 1112233333333332 2467789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+++........-+.+ -.+||++||.++....+||.+++++.|++.+.
T Consensus 168 ----------ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 168 ----------TSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred ----------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 334443333222110000 14699999999999999999999999999653
No 39
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.87 E-value=9.8e-23 Score=195.05 Aligned_cols=165 Identities=19% Similarity=0.266 Sum_probs=114.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchhh----------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVAA----------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~~----------~~~~~~ 199 (350)
+.+++..++++|++++|+|||||||||++++++|+.. +.+|.|.+... +.+++ .++.++
T Consensus 56 ~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~ 134 (340)
T PRK13536 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVREN 134 (340)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHH
Confidence 4667788899999999999999999999999999984 55888765310 11111 222333
Q ss_pred HHH---Hhccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 200 VAE---EFGCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 200 v~~---~~~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+.. ..+.. ....+...+...+... .++.+..||+||+||+.||+||+++|+++|||||
T Consensus 135 l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEP--------------- 199 (340)
T PRK13536 135 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP--------------- 199 (340)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC---------------
Confidence 321 11111 0111222333334333 3577889999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCcccccc----eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNAWR----ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+.++++.........+.+ -.+||++||+++....+||.+++++.|++.
T Consensus 200 ------t~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~ 251 (340)
T PRK13536 200 ------TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI 251 (340)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 555555443322211100 146999999999999999999999999885
No 40
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.87 E-value=9.4e-23 Score=192.61 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=112.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchhh----------hhHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVAA----------MSVAKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~~----------~~~~~~v 200 (350)
.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+... +.+++ +++.+++
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 87 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENL 87 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHH
Confidence 456778899999999999999999999999999984 55888866321 01111 1222333
Q ss_pred HHH---hcccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHH
Q psy9590 201 AEE---FGCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKL 273 (350)
Q Consensus 201 ~~~---~~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~ 273 (350)
... .+... ...+...+...+... .++.+..||+||+||++||+||+.+|++||||||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP---------------- 151 (302)
T TIGR01188 88 EMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP---------------- 151 (302)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC----------------
Confidence 211 11110 112223333333332 3477889999999999999999999999999999
Q ss_pred HhhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 274 SKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. + -.+||++||+.+....+||.+++++.|++..
T Consensus 152 -----t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~ 204 (302)
T TIGR01188 152 -----TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA 204 (302)
T ss_pred -----CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 44454443322211100 0 1469999999999999999999999999853
No 41
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.87 E-value=9.2e-23 Score=196.20 Aligned_cols=166 Identities=17% Similarity=0.243 Sum_probs=115.5
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC------C---cc----------hhhhhHHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ------P---RR----------VAAMSVAKRVA 201 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~------~---~~----------i~~~~~~~~v~ 201 (350)
.+++..++++|++++|+|||||||||+++++.|+.. +.+|+|.+.. + +. +..+++.++++
T Consensus 20 l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~ 98 (353)
T TIGR03265 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIA 98 (353)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHH
Confidence 456677889999999999999999999999999984 5588886631 0 11 11234556665
Q ss_pred HHhccc------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHH
Q psy9590 202 EEFGCR------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLS 274 (350)
Q Consensus 202 ~~~~~~------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~ 274 (350)
...... ....+...+...+... .++.+..|||||+||++|||||+.+|++++||||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP----------------- 161 (353)
T TIGR03265 99 YGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEP----------------- 161 (353)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC-----------------
Confidence 432210 1123333344444333 3467889999999999999999999999999999
Q ss_pred hhhhcCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 275 KFKKNQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
.-.++..........+.+ -.++|++||+.++...++|.++|++.|++.+.
T Consensus 162 ----~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~ 216 (353)
T TIGR03265 162 ----LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV 216 (353)
T ss_pred ----cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 333333332222111110 14699999999999999999999999998643
No 42
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.87 E-value=1.1e-22 Score=196.70 Aligned_cols=166 Identities=20% Similarity=0.224 Sum_probs=115.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------c----------chhhhhHHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------R----------RVAAMSVAKRVA 201 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~----------~i~~~~~~~~v~ 201 (350)
.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+... + -+..+++.++++
T Consensus 30 l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~ 108 (375)
T PRK09452 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVA 108 (375)
T ss_pred EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHH
Confidence 455677889999999999999999999999999984 55788765321 1 112234556665
Q ss_pred HHhcc---c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHH
Q psy9590 202 EEFGC---R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLS 274 (350)
Q Consensus 202 ~~~~~---~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~ 274 (350)
..... . ....+...+...+... .++.+..|||||+||++|||||+.+|++++||||
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP----------------- 171 (375)
T PRK09452 109 FGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES----------------- 171 (375)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC-----------------
Confidence 43221 1 1122333444444432 3467889999999999999999999999999999
Q ss_pred hhhhcCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 275 KFKKNQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
...++..........+.+ -.++|++||+.++...++|.++|++.|++.+.
T Consensus 172 ----~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~ 226 (375)
T PRK09452 172 ----LSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226 (375)
T ss_pred ----CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 333333332222111110 14699999999999999999999999999764
No 43
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.87 E-value=1e-22 Score=213.44 Aligned_cols=118 Identities=39% Similarity=0.523 Sum_probs=106.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
||||.+||+.+++.|.+... .++.++||||+|+.++|.++|.+.++|.||||+||||||||||||||+||||+|
T Consensus 218 Flpg~~ei~~l~~~L~~~~~------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~G 291 (812)
T PRK11664 218 FLPGVGEIQRVQEQLASRVA------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSG 291 (812)
T ss_pred EcCCHHHHHHHHHHHHHhcc------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECC
Confidence 99999999999999975321 258899999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeeccccccccccccCCCCccchhhhhcCCCccccCCccch
Q psy9590 81 FVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKKSSFGKKTNL 126 (350)
Q Consensus 81 ~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~~~~~~~~~~ 126 (350)
+.|+++|||++|++.|.+.|||+++..+|.+++|+. ..|.|+++
T Consensus 292 l~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~--~~G~cyrL 335 (812)
T PRK11664 292 LERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL--EPGICLHL 335 (812)
T ss_pred CcccccccccCCcceeEEEeechhhhhhhccccCCC--CCcEEEEe
Confidence 999999999999999999999999999999999865 34666544
No 44
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.87 E-value=6.6e-23 Score=197.60 Aligned_cols=167 Identities=18% Similarity=0.234 Sum_probs=115.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCC--cEEEEcCC---------c----------chhhhhHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTAR--GKIGCTQP---------R----------RVAAMSVAK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~--G~i~~~~~---------~----------~i~~~~~~~ 198 (350)
+.+++..++++|++++|+|||||||||+++++.|+.. +.+ |+|.+... + -+..+++.+
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~e 98 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVED 98 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHH
Confidence 3566778899999999999999999999999999884 557 88865310 1 112234555
Q ss_pred HHHHHhcc---c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 199 RVAEEFGC---R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 199 ~v~~~~~~---~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
+++..... . ....+...+...+... .++.+..|||||+||++|||||+.+|++|+||||
T Consensus 99 nl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP-------------- 164 (362)
T TIGR03258 99 NVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEP-------------- 164 (362)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCc--------------
Confidence 55543211 1 1122333344444332 3477889999999999999999999999999999
Q ss_pred HHHhhhhcCcccceeccCCccccc----c--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 272 KLSKFKKNQRLEPLYNKYEEPNAW----R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~~~~~----~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
...++..........+. + -.++|++||+.++...++|.++|++.|++.+.
T Consensus 165 -------~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~ 220 (362)
T TIGR03258 165 -------LSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH 220 (362)
T ss_pred -------cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 33333332222111000 0 13699999999999999999999999998643
No 45
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=2.1e-22 Score=179.73 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=109.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------cchhh-----------hhHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------RRVAA-----------MSVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------~~i~~-----------~~~~~~v 200 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... +.+++ .++.+++
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l 93 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREEL 93 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHH
Confidence 3556777899999999999999999999999999874 55888765321 01111 1222222
Q ss_pred HHHhcc--cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhh
Q psy9590 201 AEEFGC--RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFK 277 (350)
Q Consensus 201 ~~~~~~--~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~ 277 (350)
...... .....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP-------------------- 153 (205)
T cd03226 94 LLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEP-------------------- 153 (205)
T ss_pred hhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC--------------------
Confidence 211100 00012222233333322 3467789999999999999999999999999999
Q ss_pred hcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 278 KNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 278 ~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
+..+++...+.....+. .-.+||++||+.+....++|.+++++.|++
T Consensus 154 -t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 154 -TSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred -CccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 44444433222211100 014699999999999899999999999975
No 46
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.9e-22 Score=180.97 Aligned_cols=165 Identities=19% Similarity=0.219 Sum_probs=110.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cchhh----------hhHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRVAA----------MSVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i~~----------~~~~~~v 200 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... +.+++ .++.+++
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 93 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENI 93 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHH
Confidence 3567788999999999999999999999999999874 55888765311 11221 1222332
Q ss_pred HHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHH
Q psy9590 201 AEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKL 273 (350)
Q Consensus 201 ~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~ 273 (350)
.... +.. ..+.+...+...+... .++.+..||+||+||++||++|+.+|+++|||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP---------------- 157 (213)
T cd03259 94 AFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP---------------- 157 (213)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC----------------
Confidence 2111 000 0011222233333322 2466789999999999999999999999999999
Q ss_pred HhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 274 SKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+. + -++||++||+.+....++|.+++++.|++.
T Consensus 158 -----t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 158 -----LSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred -----cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 44444433222211000 0 146999999999988999999999999874
No 47
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.87 E-value=1.3e-22 Score=182.39 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=107.0
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------------chhh----------hhH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------------RVAA----------MSV 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------------~i~~----------~~~ 196 (350)
.+++..++++|++++|+|+|||||||++++++|+.. +.+|+|.+.... .+++ .++
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTV 97 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccH
Confidence 456777899999999999999999999999999874 558888764210 0111 111
Q ss_pred HHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 197 AKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 197 ~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.+++.... +.. ....+...+...+... .++.+..||+||+||++||++|+.+|+++|||||
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP------------ 165 (216)
T TIGR00960 98 YDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEP------------ 165 (216)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC------------
Confidence 22222110 000 0011222222333322 2456779999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
+..++..........+ ++ -.+||++||+.+....++|.+++++.|++
T Consensus 166 ---------t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 166 ---------TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred ---------CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 3344433322211100 00 14699999999999899999999999863
No 48
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.6e-22 Score=195.95 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=114.6
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------------------CcchhhhhHHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------------------PRRVAAMSVAKRVA 201 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------------------~~~i~~~~~~~~v~ 201 (350)
.+++..++++|++++|+|||||||||+++++.|+.. +.+|+|.+.. +.-+..+++.++++
T Consensus 35 l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~ 113 (377)
T PRK11607 35 VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIA 113 (377)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHH
Confidence 456677889999999999999999999999999984 5578775531 11122345566665
Q ss_pred HHhccc------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHH
Q psy9590 202 EEFGCR------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLS 274 (350)
Q Consensus 202 ~~~~~~------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~ 274 (350)
...... ..+.+...+...+... .++.+..|||||+||++|||||+.+|++|+||||
T Consensus 114 ~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP----------------- 176 (377)
T PRK11607 114 FGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP----------------- 176 (377)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC-----------------
Confidence 433211 1122333333333332 2467789999999999999999999999999999
Q ss_pred hhhhcCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 275 KFKKNQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
...++..........+.+ -.++|++||+.++...++|.++|++.|++.+.
T Consensus 177 ----~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 177 ----MGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred ----cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 233333222211110000 14699999999999999999999999998653
No 49
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=1.6e-22 Score=181.65 Aligned_cols=162 Identities=18% Similarity=0.266 Sum_probs=113.3
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC--Ccc--hhhhhHHHHHHHHhcc--------
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ--PRR--VAAMSVAKRVAEEFGC-------- 206 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~--~~~--i~~~~~~~~v~~~~~~-------- 206 (350)
.+.++|..+|++|++++++|+||+||||+++++.|.. .+++|+|.+.. |.+ -.+. +.+...+|.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll-~p~~G~v~V~G~~Pf~~~~~~~---~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL-LPTSGKVRVNGKDPFRRREEYL---RSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc-ccCCCeEEecCcCcchhHHHHH---HHHHHHhhhhheeeeec
Confidence 3788999999999999999999999999999999998 56799987752 321 1111 111111111
Q ss_pred ------------------cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 207 ------------------RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 207 ------------------~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
.+.+..+...+..+... .+.++..||.|||+|+.||.+|+++|++++||||
T Consensus 114 p~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp---------- 183 (325)
T COG4586 114 PALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEP---------- 183 (325)
T ss_pred hhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCC----------
Confidence 11122223333333332 3467888999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcc-----cccceeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEP-----NAWRISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
+-++++........ +..+-.+|+++||++....++|++++.||.|+.
T Consensus 184 -----------TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gql 235 (325)
T COG4586 184 -----------TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL 235 (325)
T ss_pred -----------ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcE
Confidence 44444332211110 001125799999999999999999999999987
No 50
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=1.4e-22 Score=178.79 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=113.6
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh-----------------------hh
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA-----------------------MS 195 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~-----------------------~~ 195 (350)
++.+++..++++|++++|+|+||+||||+++.++|..+ +.+|+|.+. ++.+.. ++
T Consensus 17 ~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-~~~G~I~~~-G~dit~~p~~~r~r~Gi~~VPegR~iF~~LT 94 (237)
T COG0410 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-PRSGRIIFD-GEDITGLPPHERARLGIAYVPEGRRIFPRLT 94 (237)
T ss_pred eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeeEEEC-CeecCCCCHHHHHhCCeEeCcccccchhhCc
Confidence 34566788899999999999999999999999999984 458988763 322222 33
Q ss_pred HHHHHHHHh-ccc--cc-ch-hhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEEF-GCR--LG-QE-VGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~~-~~~--~~-~~-v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.+++.... ... .. .. +...+.++-.. ..+.+...||||++|.++|||||+.+|++++||||
T Consensus 95 VeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEP----------- 163 (237)
T COG0410 95 VEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP----------- 163 (237)
T ss_pred HHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCC-----------
Confidence 333332110 000 00 00 11122222111 12356679999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcccccce-----eEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNAWRI-----SRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
.-++.+...++....+.++ -+|++.-.++..++.++|+.||+++|++.
T Consensus 164 ----------s~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv 216 (237)
T COG0410 164 ----------SEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV 216 (237)
T ss_pred ----------ccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE
Confidence 5555555544332211111 37999999999999999999999999985
No 51
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.5e-22 Score=179.74 Aligned_cols=169 Identities=13% Similarity=0.087 Sum_probs=111.7
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchh-------h-----------------h
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVA-------A-----------------M 194 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~-------~-----------------~ 194 (350)
.+.+++..++.+|++++|+|++||||||+.+.++|+.. +..|+|.+....... + .
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~ 99 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR 99 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCceEEECCcccCccccchhhccceeEEecCCccccCcch
Confidence 45778889999999999999999999999999999985 568888775311000 0 0
Q ss_pred hHHHHHHHHhcc---c-ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 195 SVAKRVAEEFGC---R-LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 195 ~~~~~v~~~~~~---~-~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
++..-+.+.+.. . ..+.+...++..+..+ .++...+|||||+||++|||||..+|++||+|||
T Consensus 100 tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEp----------- 168 (252)
T COG1124 100 TVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEP----------- 168 (252)
T ss_pred hHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCc-----------
Confidence 111111111111 0 0011222333333332 2355668999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcc---cccce--eEEEEEecccccccccCCEEEEEeCCeeeeEe
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEP---NAWRI--SRVVIATNIAETSLTIDGIFYVVDPGFVKQKV 329 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~--~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~ 329 (350)
+-.+|......... ..++- -++++-||+..-...+||+++|+|.|.+.|..
T Consensus 169 ----------tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 169 ----------TSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred ----------hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEee
Confidence 22222222111110 00111 25899999999999999999999999997654
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.4e-22 Score=181.28 Aligned_cols=165 Identities=17% Similarity=0.264 Sum_probs=110.5
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------cchhh----------hhHHHHHHHHh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------RRVAA----------MSVAKRVAEEF 204 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------~~i~~----------~~~~~~v~~~~ 204 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... +.+++ .++.+++....
T Consensus 20 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 98 (220)
T cd03293 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-PTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL 98 (220)
T ss_pred EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHH
Confidence 456777899999999999999999999999999874 55888765320 11221 23333333211
Q ss_pred ---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhh
Q psy9590 205 ---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFK 277 (350)
Q Consensus 205 ---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~ 277 (350)
+.. ..+.+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP-------------------- 158 (220)
T cd03293 99 ELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP-------------------- 158 (220)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCC--------------------
Confidence 110 0112222333333322 2466789999999999999999999999999999
Q ss_pred hcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEe--CCeeee
Q psy9590 278 KNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVD--PGFVKQ 327 (350)
Q Consensus 278 ~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid--~G~~~~ 327 (350)
+..+++.........+ ++ -++||++||..+....++|.+++++ .|++.+
T Consensus 159 -t~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 159 -FSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 4444443332221100 00 1469999999999889999999999 798753
No 53
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.2e-22 Score=182.29 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=109.4
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------------chhh----------hhH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------------RVAA----------MSV 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------------~i~~----------~~~ 196 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .+++ .++
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTV 94 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcH
Confidence 456778899999999999999999999999999874 558888663210 0111 122
Q ss_pred HHHHHHHhc----cc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 197 AKRVAEEFG----CR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 197 ~~~v~~~~~----~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
.+++..... .. ....+...+...+... .++.+..|||||+||++||++++.+|+++|||||
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP----------- 163 (235)
T cd03261 95 FENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEP----------- 163 (235)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC-----------
Confidence 233321110 00 0011222233333322 2467789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++........ ...+ -.+||++||+.+....++|.+++++.|++.
T Consensus 164 ----------t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~ 216 (235)
T cd03261 164 ----------TAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV 216 (235)
T ss_pred ----------cccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE
Confidence 33444333222111 0000 146999999999998999999999999985
No 54
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.1e-22 Score=195.01 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=113.7
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cch----------hhhhHHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRV----------AAMSVAKRVA 201 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i----------~~~~~~~~v~ 201 (350)
.+++..++++|++++|+|+||||||||+++++|+.. +.+|+|.+... +.+ ..+++.++++
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~ 97 (369)
T PRK11000 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMS 97 (369)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHH
Confidence 456777899999999999999999999999999984 55788765310 111 1234445554
Q ss_pred HHhc---cc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHH
Q psy9590 202 EEFG---CR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLS 274 (350)
Q Consensus 202 ~~~~---~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~ 274 (350)
.... .. ....+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEP----------------- 160 (369)
T PRK11000 98 FGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP----------------- 160 (369)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC-----------------
Confidence 3221 11 0112333333333332 3467789999999999999999999999999999
Q ss_pred hhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 275 KFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..++..........+. + -.+||++||+.+....++|.+++++.|++.+.
T Consensus 161 ----ts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~ 215 (369)
T PRK11000 161 ----LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (369)
T ss_pred ----cccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 33444333222111000 0 14699999999999999999999999998653
No 55
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=2.5e-22 Score=183.69 Aligned_cols=165 Identities=22% Similarity=0.345 Sum_probs=115.1
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHH-------HH---HHHHhccc---
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVA-------KR---VAEEFGCR--- 207 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~-------~~---v~~~~~~~--- 207 (350)
.++...+++.|++++|.|-+|||||||++++.++.. ++.|+|.+. ...+..++.+ +. +.+.|+.-
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie-pt~G~ilv~-g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-PTRGEILVD-GKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC-CCCceEEEC-CcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 346778899999999999999999999999999984 569999884 3333333221 11 22222221
Q ss_pred -ccchhhhh------------------hhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 208 -LGQEVGYT------------------IRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 208 -~~~~v~~~------------------~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
..+++.|. ++..+... .+..+.+|||||+||+.|||||+.+|+++++|||
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEa---------- 191 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEA---------- 191 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCc----------
Confidence 11222222 22222322 2356779999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccccce-----eEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAWRI-----SRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
| -.+++..+.+......+. ++||+-||++++++.|.|++.++.+|.+.+.
T Consensus 192 --------F---SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~ 246 (386)
T COG4175 192 --------F---SALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQV 246 (386)
T ss_pred --------h---hhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEe
Confidence 2 233444443333222211 7899999999999999999999999998653
No 56
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.86 E-value=2.1e-22 Score=193.87 Aligned_cols=165 Identities=16% Similarity=0.235 Sum_probs=113.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------------cchh----------hhh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------------RRVA----------AMS 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------------~~i~----------~~~ 195 (350)
.+++..++++|++++|+|+|||||||++++++|+.. +.+|+|.+... +.++ .++
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T 87 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT 87 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence 355677899999999999999999999999999984 56888866321 0111 123
Q ss_pred HHHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.++++... +.. ..+.+...+...+... .++.+..|||||+||++|||||+.+|++|+||||
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP----------- 156 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA----------- 156 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC-----------
Confidence 444444321 111 1122333333333332 3467789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcccc---c-c-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNA---W-R-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~---~-~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
.-.+++.........+ . . -++||++||+.++...++|.+++++.|++.+
T Consensus 157 ----------~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~ 210 (363)
T TIGR01186 157 ----------FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ 210 (363)
T ss_pred ----------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe
Confidence 3334443332221111 1 0 1579999999999999999999999999864
No 57
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.86 E-value=2.7e-22 Score=192.94 Aligned_cols=167 Identities=18% Similarity=0.222 Sum_probs=114.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------C--cchh----------hhhHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------P--RRVA----------AMSVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~--~~i~----------~~~~~~~v 200 (350)
+.+++..++++|++++|+||||||||||+++++|+.. +.+|+|.+.. + +.++ .+++.+++
T Consensus 17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni 95 (353)
T PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI 95 (353)
T ss_pred EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHH
Confidence 3456777889999999999999999999999999984 5588886631 1 1121 23344555
Q ss_pred HHHhcc-------c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 201 AEEFGC-------R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 201 ~~~~~~-------~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
+..... . ....+...+...+... .++.+..|||||+||++||+||+.+|++|+||||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP------------ 163 (353)
T PRK10851 96 AFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEP------------ 163 (353)
T ss_pred HhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC------------
Confidence 432211 0 0112233333333322 3467889999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
...++..........+. + -.++|++||+.+....++|.++|++.|++.+.
T Consensus 164 ---------~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~ 218 (353)
T PRK10851 164 ---------FGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA 218 (353)
T ss_pred ---------CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 33444433322211111 0 14699999999999999999999999998643
No 58
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.86 E-value=3.2e-22 Score=184.68 Aligned_cols=166 Identities=13% Similarity=0.144 Sum_probs=111.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------cchhh----------hhHHHHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------RRVAA----------MSVAKRVAEE 203 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------~~i~~----------~~~~~~v~~~ 203 (350)
+.+++...+++|++++|+|+||||||||+++++|... +.+|+|.+... +.+++ .++.+++...
T Consensus 27 il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 105 (257)
T PRK11247 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-PSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLG 105 (257)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhc
Confidence 3566778899999999999999999999999999874 55888765311 11111 2333333321
Q ss_pred hcccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcc
Q psy9590 204 FGCRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRL 282 (350)
Q Consensus 204 ~~~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v 282 (350)
........+...+...+... .+..+..||+||+||++||++++.+|+++||||| +..+
T Consensus 106 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEP---------------------t~~L 164 (257)
T PRK11247 106 LKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEP---------------------LGAL 164 (257)
T ss_pred ccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC---------------------CCCC
Confidence 10001112222233333322 2466789999999999999999999999999999 4444
Q ss_pred cceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 283 EPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 283 ~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
++.........+. + -.+||++||+.+....++|.+++++.|.+..
T Consensus 165 D~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 165 DALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 4433322211100 0 1469999999999889999999999999864
No 59
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.86 E-value=2.8e-22 Score=180.01 Aligned_cols=163 Identities=18% Similarity=0.271 Sum_probs=107.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------------chhh----------hh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------------RVAA----------MS 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------------~i~~----------~~ 195 (350)
+.+++..++++|++++|+|+|||||||+++.++|... +.+|+|.+.... .+++ .+
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT 95 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCc
Confidence 4566778899999999999999999999999999874 558888663210 0111 11
Q ss_pred HHHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.+++.... +.. ....+...+...+... .++.+..||+||+||++||++|+.+|+++|||||
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEP----------- 164 (214)
T TIGR02673 96 VYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP----------- 164 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC-----------
Confidence 122221110 000 0011222222323322 2456779999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCe
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
+..+++.........+ .+ -++||++||..+....++|.+++++.|+
T Consensus 165 ----------t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 165 ----------TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred ----------cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 3344333322211100 00 1469999999999999999999999884
No 60
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.86 E-value=2.2e-22 Score=216.00 Aligned_cols=116 Identities=38% Similarity=0.590 Sum_probs=103.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
||||++||+.+++.|.+. ..+.+.++||||+|+.++|.++|.+. +.||||+||||||||||||||+||||+|
T Consensus 285 FLpg~~EI~~l~~~L~~~------~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsG 356 (1283)
T TIGR01967 285 FLPGEREIRDAAEILRKR------NLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTG 356 (1283)
T ss_pred eCCCHHHHHHHHHHHHhc------CCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCC
Confidence 999999999999998753 12468899999999999999999764 4589999999999999999999999999
Q ss_pred ceeeeeeeccccccccccccCCCCccchhhhhcCCCccccCCccch
Q psy9590 81 FVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKKSSFGKKTNL 126 (350)
Q Consensus 81 ~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~~~~~~~~~~ 126 (350)
+.|.++||+++|+++|.+.|||+++..+|.++.|+.. .|.|.++
T Consensus 357 l~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~--~G~cyRL 400 (1283)
T TIGR01967 357 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA--PGICIRL 400 (1283)
T ss_pred CccccccccccCccccCCccCCHHHHHHHhhhhCCCC--CceEEEe
Confidence 9999999999999999999999999999999998653 4555443
No 61
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3.7e-22 Score=171.34 Aligned_cols=167 Identities=18% Similarity=0.250 Sum_probs=115.5
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE----------------cCCcchhhhhHHHHHHH
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC----------------TQPRRVAAMSVAKRVAE 202 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~----------------~~~~~i~~~~~~~~v~~ 202 (350)
.+.+++..+|.+|+.++++||+||||||+++.+.|+.. +..|.|.. +++.-+..+++.++++.
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-PSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-cccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence 45677888999999999999999999999999999984 44676643 23344566667777775
Q ss_pred Hhcc---ccc---chhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHh
Q psy9590 203 EFGC---RLG---QEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSK 275 (350)
Q Consensus 203 ~~~~---~~~---~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~ 275 (350)
.+.. ... +.....+...+... .++.+.+|||||+||+-|||||+-+|++++||||
T Consensus 98 gL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEP------------------ 159 (259)
T COG4525 98 GLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEP------------------ 159 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCc------------------
Confidence 4432 111 11112222222222 2478889999999999999999999999999999
Q ss_pred hhhcCcccceeccCCcc---cccce--eEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 276 FKKNQRLEPLYNKYEEP---NAWRI--SRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 276 ~~~~~~v~~~~~~~~~~---~~~~~--~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
|+ .++...++.... ..|+. ..+++-||..|+++-+++..+|++.|--+.
T Consensus 160 -fg--AlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRv 213 (259)
T COG4525 160 -FG--ALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213 (259)
T ss_pred -hh--hHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCcee
Confidence 22 111111111110 11111 458999999999999999999999875443
No 62
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.86 E-value=6.3e-22 Score=180.30 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=110.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhh----------hhHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAA----------MSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~----------~~~~ 197 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... ..+++ .++.
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence 3556778899999999999999999999999999874 55888765321 00111 1222
Q ss_pred HHHHHHhccc----------------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 198 KRVAEEFGCR----------------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 198 ~~v~~~~~~~----------------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
+++....... ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP--- 170 (236)
T cd03219 94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP--- 170 (236)
T ss_pred HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC---
Confidence 3332211000 0011222233333322 2467789999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcccc---c-ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---W-RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~-~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ + .-++||++||+.+....++|.+++++.|.+..
T Consensus 171 ------------------t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 171 ------------------AAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred ------------------cccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 4444433222211100 0 11469999999999999999999999998853
No 63
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.86 E-value=3.3e-22 Score=179.43 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=109.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------cchhh------------hhHHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------RRVAA------------MSVAKRVA 201 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------~~i~~------------~~~~~~v~ 201 (350)
+.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+... +.+++ .++.+++.
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~ 92 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-PTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVL 92 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHH
Confidence 3566788999999999999999999999999999874 55888866321 11111 23333333
Q ss_pred HHhcc----------cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccCh
Q psy9590 202 EEFGC----------RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDP 270 (350)
Q Consensus 202 ~~~~~----------~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~ 270 (350)
..... ...+.+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP------------- 159 (213)
T cd03235 93 MGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP------------- 159 (213)
T ss_pred hccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC-------------
Confidence 21100 00011222223323222 2356789999999999999999999999999999
Q ss_pred hHHHhhhhcCcccceeccCCcccc---c-ceeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 271 TKLSKFKKNQRLEPLYNKYEEPNA---W-RISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 271 l~~~~~~~~~~v~~~~~~~~~~~~---~-~~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
+..+++.........+ . .-.+||++||+.+....++|.+++++.|.+
T Consensus 160 --------t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 160 --------FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred --------cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 4444433322211100 0 014699999999999999999999998754
No 64
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.86 E-value=3.8e-22 Score=179.60 Aligned_cols=161 Identities=14% Similarity=0.159 Sum_probs=106.2
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------------cchhh----------hh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------------RRVAA----------MS 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------------~~i~~----------~~ 195 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... +.+++ .+
T Consensus 20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (218)
T cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLT 98 (218)
T ss_pred EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCc
Confidence 456777899999999999999999999999999974 55888866321 01111 12
Q ss_pred HHHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.+++.... +.. ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP----------- 167 (218)
T cd03255 99 ALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEP----------- 167 (218)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCC-----------
Confidence 222222111 100 0011222233333322 2466789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCe
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
+..+++........ ...+ -++||++||+.+... ++|.+++++.|+
T Consensus 168 ----------~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 168 ----------TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGK 217 (218)
T ss_pred ----------cccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCc
Confidence 34444433222211 0111 146999999999875 999999999986
No 65
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.86 E-value=3.8e-22 Score=188.37 Aligned_cols=165 Identities=18% Similarity=0.211 Sum_probs=112.4
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchh----------hhhHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVA----------AMSVAKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~----------~~~~~~~v 200 (350)
.+++...+++|++++|+|||||||||++++++|... +.+|+|.+... +.++ .+++.+++
T Consensus 18 l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l 96 (301)
T TIGR03522 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYL 96 (301)
T ss_pred EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHH
Confidence 456677899999999999999999999999999874 55888765321 0011 12233333
Q ss_pred HH---Hhcccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHH
Q psy9590 201 AE---EFGCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKL 273 (350)
Q Consensus 201 ~~---~~~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~ 273 (350)
.. .++... ...+...+...+... .++.+..||+||+||++||+|++++|+++|||||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEP---------------- 160 (301)
T TIGR03522 97 QFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP---------------- 160 (301)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC----------------
Confidence 21 111110 112333333334332 3577889999999999999999999999999999
Q ss_pred HhhhhcCcccceeccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 274 SKFKKNQRLEPLYNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++...+..... ..+-.+||++||+.+....+||.+++++.|.+..
T Consensus 161 -----t~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~ 212 (301)
T TIGR03522 161 -----TTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA 212 (301)
T ss_pred -----cccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 444444332221110 0001469999999999999999999999999863
No 66
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.86 E-value=2.9e-22 Score=195.22 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=112.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhh----------hhHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAA----------MSVAK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~----------~~~~~ 198 (350)
+.+++..++++|++++|+|||||||||+++++.|+.. +.+|.|.+... +++++ +++.+
T Consensus 18 vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e 96 (402)
T PRK09536 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQ 96 (402)
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHH
Confidence 3556777899999999999999999999999999884 55888866421 01111 12223
Q ss_pred HHHHHh-------c---ccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 199 RVAEEF-------G---CRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 199 ~v~~~~-------~---~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
.+.... + ....+.+...+...+... .++.+..||+||+||++||++|+++|++||||||
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEP---------- 166 (402)
T PRK09536 97 VVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEP---------- 166 (402)
T ss_pred HHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC----------
Confidence 322110 0 001112333333333332 2467889999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcc---cccc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ..++ -.+||++||+.+....++|.+++++.|++..
T Consensus 167 -----------tsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 167 -----------TASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219 (402)
T ss_pred -----------cccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 44444433222211 0110 1469999999999999999999999999753
No 67
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=4.8e-22 Score=178.13 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=108.9
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cchh----------hhhHHHHHHHH
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRVA----------AMSVAKRVAEE 203 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i~----------~~~~~~~v~~~ 203 (350)
++..++.+|++++|+|+|||||||++++++|... +.+|+|.+... +.++ ..++.+++...
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 6778899999999999999999999999999984 55787765321 0111 12233333321
Q ss_pred hcc--c----ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhh
Q psy9590 204 FGC--R----LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKF 276 (350)
Q Consensus 204 ~~~--~----~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~ 276 (350)
... . ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP------------------- 155 (211)
T cd03298 95 LSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP------------------- 155 (211)
T ss_pred cccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC-------------------
Confidence 110 0 0112222333333322 2466779999999999999999999999999999
Q ss_pred hhcCcccceeccCCccccc----c-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 277 KKNQRLEPLYNKYEEPNAW----R-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 277 ~~~~~v~~~~~~~~~~~~~----~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..++..........+. . -.+||++||+.+....++|.+++++.|++.
T Consensus 156 --~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 156 --FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred --cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence 33444333222211000 0 146999999999999999999999999874
No 68
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=6.8e-22 Score=180.60 Aligned_cols=166 Identities=19% Similarity=0.203 Sum_probs=110.9
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cchh----------hhhHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRVA----------AMSVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i~----------~~~~~~~v 200 (350)
+.+++..++++|++++|+|+|||||||++++++|+.. +.+|+|.+... +.++ ..++.+++
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 95 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV 95 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHH
Confidence 3556778899999999999999999999999999874 45787755310 0111 12333433
Q ss_pred HHHh---cc----c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 201 AEEF---GC----R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 201 ~~~~---~~----~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.... +. . ..+.+...+...+... .++.+..||+||+||++||+|++.+|+++|||||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP------------ 163 (239)
T cd03296 96 AFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEP------------ 163 (239)
T ss_pred hhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC------------
Confidence 3211 10 0 0011222233333322 2466789999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ..++ -.+||++||..+....++|.+++++.|++..
T Consensus 164 ---------~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (239)
T cd03296 164 ---------FGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ 217 (239)
T ss_pred ---------cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 44444433222211 0111 1469999999999889999999999998853
No 69
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.86 E-value=7e-22 Score=186.77 Aligned_cols=166 Identities=19% Similarity=0.272 Sum_probs=112.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchhh----------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVAA----------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~~----------~~~~~~ 199 (350)
+.+++..++++|++++|+|+|||||||++++++|+.. +.+|+|.+... +.+++ .++.++
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 97 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVREN 97 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHH
Confidence 4567788999999999999999999999999999874 55888865310 01111 122233
Q ss_pred HHH---Hhcccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 200 VAE---EFGCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 200 v~~---~~~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+.. ..+... ...+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP--------------- 162 (303)
T TIGR01288 98 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP--------------- 162 (303)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC---------------
Confidence 321 111110 011222223333322 2467889999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. .-.+||++||+.+....+||.+++++.|++..
T Consensus 163 ------t~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~ 215 (303)
T TIGR01288 163 ------TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIA 215 (303)
T ss_pred ------CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 44454443332211110 01469999999999999999999999998753
No 70
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=5.4e-22 Score=178.96 Aligned_cols=166 Identities=17% Similarity=0.213 Sum_probs=110.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchhh----------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVAA----------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~~----------~~~~~~ 199 (350)
+.+++..++.+|++++|+|+||||||||+++++|... +.+|+|.+... +.+++ .++.+.
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN 93 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHH
Confidence 3566788899999999999999999999999999874 55788765321 01111 122232
Q ss_pred HHHH---hccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 200 VAEE---FGCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 200 v~~~---~~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+... .+.. ....+...+...+... .++.+..||+||+||++||+|++.+|+++|+|||
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEP--------------- 158 (220)
T cd03265 94 LYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP--------------- 158 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC---------------
Confidence 2211 1110 0111222233333322 2466789999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCcccc---c-c-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNA---W-R-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~---~-~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ . + -.+||++||..+....++|.+++++.|++..
T Consensus 159 ------t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 212 (220)
T cd03265 159 ------TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212 (220)
T ss_pred ------ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 3344433322111100 0 0 1469999999999999999999999999853
No 71
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.85 E-value=5.6e-22 Score=177.63 Aligned_cols=162 Identities=17% Similarity=0.242 Sum_probs=106.2
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh-----------hHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM-----------SVAK 198 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~-----------~~~~ 198 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+... +.+++. ++.+
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~ 95 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEE 95 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHH
Confidence 456777899999999999999999999999999874 55888865321 011111 1112
Q ss_pred HHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 199 RVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 199 ~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
++.... +.. ....+...+...+... .++.+..||+||+||++||+|++.+|+++|||||
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP-------------- 161 (211)
T cd03225 96 EVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEP-------------- 161 (211)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC--------------
Confidence 221100 000 0011112222222221 2466789999999999999999999999999999
Q ss_pred HHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCe
Q psy9590 272 KLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
+..+++.........+ ++ -++||++||+.+....++|.+++++.|+
T Consensus 162 -------t~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 162 -------TAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred -------cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 4444444332221111 00 1469999999999999999999999884
No 72
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.85 E-value=8.2e-22 Score=166.33 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=94.7
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccC
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDC 221 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~ 221 (350)
+++...+++|++++|+|+|||||||++++++|... +.+|+|.+.... .++|...
T Consensus 17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~---------------------~i~~~~~---- 70 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTV---------------------KIGYFEQ---- 70 (144)
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeE---------------------EEEEEcc----
Confidence 44566788999999999999999999999999984 568999874321 1111111
Q ss_pred CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccc-eeEE
Q psy9590 222 TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR-ISRV 300 (350)
Q Consensus 222 ~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~v 300 (350)
||+||+||++||++++.+|+++|+||| ...++............+ -++|
T Consensus 71 ---------lS~G~~~rv~laral~~~p~illlDEP---------------------~~~LD~~~~~~l~~~l~~~~~ti 120 (144)
T cd03221 71 ---------LSGGEKMRLALAKLLLENPNLLLLDEP---------------------TNHLDLESIEALEEALKEYPGTV 120 (144)
T ss_pred ---------CCHHHHHHHHHHHHHhcCCCEEEEeCC---------------------ccCCCHHHHHHHHHHHHHcCCEE
Confidence 999999999999999999999999999 222222211111100000 0469
Q ss_pred EEEecccccccccCCEEEEEeCCe
Q psy9590 301 VIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 301 i~sT~iae~s~ti~d~~~vid~G~ 324 (350)
+++||..+....++|.+++++.|+
T Consensus 121 l~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 121 ILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999985
No 73
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.9e-22 Score=190.19 Aligned_cols=165 Identities=19% Similarity=0.217 Sum_probs=111.7
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------------cchhh----------hhH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------------RRVAA----------MSV 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------------~~i~~----------~~~ 196 (350)
.+++..++++|++++|+|+|||||||++++++|+.. +.+|+|.+... +.+++ .++
T Consensus 21 l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv 99 (343)
T PRK11153 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTV 99 (343)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcH
Confidence 456677899999999999999999999999999984 55888866321 01111 223
Q ss_pred HHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 197 AKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 197 ~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.+++.... +.. ..+.+...+...+... .++.+..||+||+||++||++|+.+|++||||||
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEP------------ 167 (343)
T PRK11153 100 FDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEA------------ 167 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC------------
Confidence 33333211 110 0112223333333322 2466789999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. + -.+||++||+.+....+||.+++++.|++..
T Consensus 168 ---------ts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~ 221 (343)
T PRK11153 168 ---------TSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221 (343)
T ss_pred ---------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 44444433322211100 0 1469999999999999999999999999864
No 74
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.85 E-value=6e-22 Score=178.33 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=109.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cch----------hhhhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRV----------AAMSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i----------~~~~~~~~ 199 (350)
+.+++..++++|++++|+|+|||||||+++.++|+.. +.+|+|.+... +.+ ...++.++
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 3556777899999999999999999999999999874 55888765310 001 11223333
Q ss_pred HHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 200 VAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 200 v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+.... +.. ....+...++..+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP--------------- 163 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEP--------------- 163 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCC---------------
Confidence 32211 100 0111222233333322 2467789999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..++..........+ ++ -.+||++||..+....++|.+++++.|++.
T Consensus 164 ------t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 164 ------TTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred ------CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 3444433322211100 00 146999999999999999999999999874
No 75
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.85 E-value=6.2e-22 Score=170.54 Aligned_cols=142 Identities=16% Similarity=0.129 Sum_probs=100.6
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhccc
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFED 220 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~ 220 (350)
.+++..++++|++++|+|+|||||||++++++|.. .+.+|+|.+. ...+...+..... ...+++..
T Consensus 16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~-g~~~~~~~~~~~~--------~~~i~~~~---- 81 (163)
T cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVD-GKEVSFASPRDAR--------RAGIAMVY---- 81 (163)
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEEC-CEECCcCCHHHHH--------hcCeEEEE----
Confidence 45667789999999999999999999999999998 4568998874 3333221111100 01122211
Q ss_pred CCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc----c
Q psy9590 221 CTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW----R 296 (350)
Q Consensus 221 ~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~----~ 296 (350)
+||+||+||+++|++++.+|+++|+||| ...++....+.....+. .
T Consensus 82 ---------qLS~G~~qrl~laral~~~p~illlDEP---------------------~~~LD~~~~~~l~~~l~~~~~~ 131 (163)
T cd03216 82 ---------QLSVGERQMVEIARALARNARLLILDEP---------------------TAALTPAEVERLFKVIRRLRAQ 131 (163)
T ss_pred ---------ecCHHHHHHHHHHHHHhcCCCEEEEECC---------------------CcCCCHHHHHHHHHHHHHHHHC
Confidence 1999999999999999999999999999 33333322221111000 0
Q ss_pred eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 297 ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 297 ~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
-.+||++||..+....++|.+++++.|.+.
T Consensus 132 ~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 132 GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 146999999999888899999999999874
No 76
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.85 E-value=5.5e-22 Score=212.41 Aligned_cols=114 Identities=36% Similarity=0.568 Sum_probs=102.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
||||++||+.+++.|.+. +.+.+.++||||+|+.++|.++|.+ .|.||||+||||||||||||||+||||+|
T Consensus 292 FLpg~~EIe~lae~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~G 363 (1294)
T PRK11131 292 FMSGEREIRDTADALNKL------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPG 363 (1294)
T ss_pred EcCCHHHHHHHHHHHHhc------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECC
Confidence 999999999999988753 2345789999999999999999986 57899999999999999999999999999
Q ss_pred ceeeeeeeccccccccccccCCCCccchhhhhcCCCccccCCcc
Q psy9590 81 FVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKKSSFGKKT 124 (350)
Q Consensus 81 ~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~~~~~~~~ 124 (350)
++|.++||+++|++.|.+.|+|+++..+|.++.|+. ..|.|.
T Consensus 364 l~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~--~~G~c~ 405 (1294)
T PRK11131 364 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV--SEGICI 405 (1294)
T ss_pred CccccccccccCcccCCeeecCHhhHhhhccccCCC--CCcEEE
Confidence 999999999999999999999999999999998865 334443
No 77
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=5.6e-22 Score=177.55 Aligned_cols=164 Identities=15% Similarity=0.205 Sum_probs=108.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-------cchh----------hhhHHHHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-------RRVA----------AMSVAKRVAEE 203 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-------~~i~----------~~~~~~~v~~~ 203 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+... +.++ ..++.+++...
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 94 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-PDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYL 94 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHH
Confidence 345667889999999999999999999999999874 55888765321 0111 12333333221
Q ss_pred ---hccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhh
Q psy9590 204 ---FGCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKF 276 (350)
Q Consensus 204 ---~~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~ 276 (350)
.+.. ..+.+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP------------------- 155 (210)
T cd03269 95 AQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP------------------- 155 (210)
T ss_pred HHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCC-------------------
Confidence 1110 0112222233333322 2366789999999999999999999999999999
Q ss_pred hhcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 277 KKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 277 ~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+. +-.+||++||..+....++|.+++++.|++.
T Consensus 156 --~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 156 --FSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred --CcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 33333332221111000 0146999999999998999999999999874
No 78
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=7.8e-22 Score=183.39 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=111.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------------cchhh----------h
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------------RRVAA----------M 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------------~~i~~----------~ 194 (350)
+.+++..++++|++++|+|+|||||||++++++|+.. +.+|.|.+... +.+++ .
T Consensus 39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 3567788999999999999999999999999999984 55788765321 01111 1
Q ss_pred hHHHHHHHHhc---cc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 195 SVAKRVAEEFG---CR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 195 ~~~~~v~~~~~---~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
++.+++..... .. ....+...+...+... .++.+..||+||+||++||+|++.+|++||||||
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEP---------- 187 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA---------- 187 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC----------
Confidence 22233322110 00 0011222233333322 2466789999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ..++ -++||++||+.+....++|.+++++.|++..
T Consensus 188 -----------t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 241 (269)
T cd03294 188 -----------FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ 241 (269)
T ss_pred -----------CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 44444443322211 0111 1469999999999889999999999999854
No 79
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.85 E-value=1.3e-21 Score=177.84 Aligned_cols=165 Identities=17% Similarity=0.180 Sum_probs=109.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhh----------hhHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAA----------MSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~----------~~~~ 197 (350)
+.+++...+.+|++++|+|+|||||||++++++|... +.+|+|.+... ..+++ .++.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE 93 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence 3567788899999999999999999999999999874 55788765311 01111 1222
Q ss_pred HHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccCh
Q psy9590 198 KRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDP 270 (350)
Q Consensus 198 ~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~ 270 (350)
+++.... +.. ....+...+...+... .++.+..||+||+||++||++++.+|++||||||
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP------------- 160 (232)
T cd03218 94 ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP------------- 160 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC-------------
Confidence 3332211 100 0011222222223322 2466789999999999999999999999999999
Q ss_pred hHHHhhhhcCcccceeccCCcc---cccc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 271 TKLSKFKKNQRLEPLYNKYEEP---NAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 271 l~~~~~~~~~~v~~~~~~~~~~---~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..++......... ..++ -.+||++||+.+....++|.+++++.|++.
T Consensus 161 --------t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 161 --------FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL 212 (232)
T ss_pred --------cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 33444333222111 0000 146999999999999999999999999885
No 80
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.7e-22 Score=181.65 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=113.3
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------------------chhhhh
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------------------RVAAMS 195 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------------------~i~~~~ 195 (350)
.+.+++...+++|+.++|+|+|||||||+++.+.|+. .+.+|.|.+.... .+..-+
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl-~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL-KPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC-cCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 3456678889999999999999999999999999998 4557888553211 111122
Q ss_pred HHHHHHHH---hcccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEE---FGCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~---~~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.+.++.. ++... ...+...+...+... .++.+..|||||+||++||.+|+.+|++||||||
T Consensus 97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEP----------- 165 (235)
T COG1122 97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEP----------- 165 (235)
T ss_pred HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCC-----------
Confidence 22333321 11111 112222222222222 3467789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcccccc---e--eEEEEEecccccccccCCEEEEEeCCee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNAWR---I--SRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~---~--~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
+..+++.-.........+ - .+||++||++|.....+|+++|++.|++
T Consensus 166 ----------ta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i 217 (235)
T COG1122 166 ----------TAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217 (235)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEE
Confidence 555555443332211111 1 4699999999999999999999999988
No 81
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.6e-21 Score=187.85 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=109.7
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------------cchhh----------hhHH
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------------RRVAA----------MSVA 197 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------------~~i~~----------~~~~ 197 (350)
++..++++|++++|+|||||||||++++++|+.. +.+|.|.+... +.+++ .++.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence 4667788999999999999999999999999874 55788765310 11111 2233
Q ss_pred HHHHHHhcccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhh
Q psy9590 198 KRVAEEFGCRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKF 276 (350)
Q Consensus 198 ~~v~~~~~~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~ 276 (350)
+++...........+...+...+... .++.+..|||||+||++||++|+.+|+++|||||
T Consensus 95 enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEP------------------- 155 (352)
T PRK11144 95 GNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEP------------------- 155 (352)
T ss_pred HHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC-------------------
Confidence 33332111111122222333333322 3467789999999999999999999999999999
Q ss_pred hhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 277 KKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 277 ~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+ .+ -.+||++||+.+....++|.+++++.|++.+
T Consensus 156 --ts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~ 209 (352)
T PRK11144 156 --LASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA 209 (352)
T ss_pred --cccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 3344433322211110 00 1469999999999999999999999999864
No 82
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.85 E-value=8.6e-22 Score=177.56 Aligned_cols=165 Identities=18% Similarity=0.217 Sum_probs=109.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchh----------hhhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVA----------AMSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~----------~~~~~~~ 199 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... +.++ ..++.++
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 95 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREH 95 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHH
Confidence 3566788899999999999999999999999999974 55888765311 0011 1122233
Q ss_pred HHHHh---cccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 200 VAEEF---GCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 200 v~~~~---~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+.... +... ...+...++..+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP--------------- 160 (220)
T cd03263 96 LRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP--------------- 160 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC---------------
Confidence 32211 1110 011222233333322 2466789999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+ .+-.+||++||..+....++|.+++++.|.+.
T Consensus 161 ------~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 161 ------TSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR 211 (220)
T ss_pred ------CCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 3333333222111100 00146999999999998999999999999875
No 83
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.8e-22 Score=172.94 Aligned_cols=167 Identities=16% Similarity=0.201 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCC----CcEEEEc-----------------------CCcc
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTA----RGKIGCT-----------------------QPRR 190 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~----~G~i~~~-----------------------~~~~ 190 (350)
.++.++|...|.++++++++||+||||||+++++........ .|+|.+. .|..
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 456788999999999999999999999999999988653221 3565442 2222
Q ss_pred hhhhhHHHHHHHHh---cccc---cchhhhhhhccc---C--CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 191 VAAMSVAKRVAEEF---GCRL---GQEVGYTIRFED---C--TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 191 i~~~~~~~~v~~~~---~~~~---~~~v~~~~~~~~---~--~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
+. ++..++++... |... .+.|...++... . ...++....|||||+||++||||++.+|++|+||||
T Consensus 100 Fp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEP-- 176 (253)
T COG1117 100 FP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEP-- 176 (253)
T ss_pred CC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCc--
Confidence 22 44555555322 1111 111222221110 0 011233447999999999999999999999999999
Q ss_pred cccccccccChhHHHhhhhcCcccceec---cCCcccccceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 260 RTIHTDVLFDPTKLSKFKKNQRLEPLYN---KYEEPNAWRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 260 r~~~~d~ll~~l~~~~~~~~~~v~~~~~---~~~~~~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
...+++... ++......+-=+||+.||.+.-+..+.|.+.++-.|...
T Consensus 177 -------------------tSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~Lv 227 (253)
T COG1117 177 -------------------TSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELV 227 (253)
T ss_pred -------------------ccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEE
Confidence 333333322 211111112246999999999999999999999999774
No 84
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.85 E-value=8.1e-22 Score=179.15 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=109.7
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------------cchhhhhHHHHHHHHh--
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------------RRVAAMSVAKRVAEEF-- 204 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------------~~i~~~~~~~~v~~~~-- 204 (350)
++..++++|++++|+|+|||||||++++++|... +.+|+|.+... .-....++.+++....
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-PTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 3456788999999999999999999999999984 56888865311 0011133444443221
Q ss_pred ---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhh
Q psy9590 205 ---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFK 277 (350)
Q Consensus 205 ---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~ 277 (350)
+.. ....+...+...+... .++.+..||+||+||++||++++.+|++||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP-------------------- 141 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEP-------------------- 141 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC--------------------
Confidence 000 0011222333333322 2467789999999999999999999999999999
Q ss_pred hcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 278 KNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 278 ~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ ++ -.+||++||+.+....++|.+++++.|.+..
T Consensus 142 -t~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 142 -FGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred -CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 4444443332221111 10 1469999999999999999999999998853
No 85
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.85 E-value=1.2e-21 Score=171.30 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=105.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhh---HHHHHHHHhcccccchhhhhhh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS---VAKRVAEEFGCRLGQEVGYTIR 217 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~---~~~~v~~~~~~~~~~~v~~~~~ 217 (350)
.+++...+.+|++++|+|+|||||||++++++|.. .+.+|.|.+.. ..+.... ....++..+. .+.
T Consensus 15 l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g-~~~~~~~~~~~~~~i~~~~q---------~l~ 83 (180)
T cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDG-KDLASLSPKELARKIAYVPQ---------ALE 83 (180)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECC-EECCcCCHHHHHHHHhHHHH---------HHH
Confidence 45567788999999999999999999999999987 45689998742 2221111 1112222111 111
Q ss_pred cccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---c
Q psy9590 218 FEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---N 293 (350)
Q Consensus 218 ~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~ 293 (350)
..+... .++.+..||+||+||++||++++.+|+++||||| +..++....+.... .
T Consensus 84 ~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP---------------------~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 84 LLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP---------------------TSHLDIAHQIELLELLRR 142 (180)
T ss_pred HcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC---------------------ccCCCHHHHHHHHHHHHH
Confidence 111111 2356678999999999999999999999999999 33333322221111 0
Q ss_pred ccc--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 294 AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 294 ~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
..+ -.+||++||..+....++|.+++++.|.+.
T Consensus 143 ~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 143 LARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 001 146999999999988999999999999874
No 86
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.1e-21 Score=179.13 Aligned_cols=165 Identities=13% Similarity=0.136 Sum_probs=108.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------------chhh----------hhH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------------RVAA----------MSV 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------------~i~~----------~~~ 196 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+.... .+++ .++
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T cd03256 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSV 95 (241)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcH
Confidence 556778899999999999999999999999999874 558887663210 0111 122
Q ss_pred HHHHHHHh-----------cc---cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 197 AKRVAEEF-----------GC---RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 197 ~~~v~~~~-----------~~---~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.+++.... +. ...+.+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP---- 171 (241)
T cd03256 96 LENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP---- 171 (241)
T ss_pred HHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCc----
Confidence 22222110 00 00011112222222221 2456779999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. + -++||++||+.+....++|.+++++.|++..
T Consensus 172 -----------------t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 172 -----------------VASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225 (241)
T ss_pred -----------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 44444433322211110 0 1469999999999988999999999999753
No 87
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.85 E-value=9.2e-22 Score=176.49 Aligned_cols=165 Identities=16% Similarity=0.200 Sum_probs=110.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cchhhh----------hHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRVAAM----------SVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i~~~----------~~~~~v 200 (350)
+.+++..++++|++++|+|+|||||||+++.++|... +.+|+|.+... +.++++ ++.+++
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 93 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI 93 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHH
Confidence 3567778899999999999999999999999999874 45787755310 012221 222333
Q ss_pred HHHh---cccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHH
Q psy9590 201 AEEF---GCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKL 273 (350)
Q Consensus 201 ~~~~---~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~ 273 (350)
.... +... .+.+...+...+... .+..+..||+||+||++||++++.+|+++|||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP---------------- 157 (213)
T cd03301 94 AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP---------------- 157 (213)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC----------------
Confidence 2110 1000 011222223333322 2466789999999999999999999999999999
Q ss_pred HhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 274 SKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+. + -.+||++||+.+....++|.+++++.|.+.
T Consensus 158 -----t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 158 -----LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred -----cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 44444443322211110 0 146999999999999999999999999874
No 88
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.85 E-value=1.1e-21 Score=179.55 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=107.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchh---------------h----------h
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVA---------------A----------M 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~---------------~----------~ 194 (350)
+.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+.. ..+. + .
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g-~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-PSSGSILLEG-TDITKLRGKKLRKLRRRIGMIFQHYNLIERL 94 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCccEEEECC-EEhhhCCHHHHHHHHhheEEEcCCCcccccc
Confidence 3566788899999999999999999999999999874 5588887632 1111 1 1
Q ss_pred hHHHHHHHHhc-----------c---cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 195 SVAKRVAEEFG-----------C---RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 195 ~~~~~v~~~~~-----------~---~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
++.+++..... . .....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP-- 172 (243)
T TIGR02315 95 TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP-- 172 (243)
T ss_pred cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC--
Confidence 11122211000 0 00001111222222221 2356778999999999999999999999999999
Q ss_pred cccccccccChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 260 RTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 260 r~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++........ ..++ -.+||++||..+....++|.+++++.|++.
T Consensus 173 -------------------t~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 173 -------------------IASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred -------------------cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 33444332221111 0100 146999999999988999999999999885
No 89
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.85 E-value=1e-21 Score=176.10 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=106.4
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-------------chhh----------hhHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-------------RVAA----------MSVA 197 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-------------~i~~----------~~~~ 197 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+.... .+++ .++.
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 94 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVL 94 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHH
Confidence 456677899999999999999999999999999874 558887663210 0111 1222
Q ss_pred HHHHHHh----ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 198 KRVAEEF----GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 198 ~~v~~~~----~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
+++.... +.. ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP------------ 162 (213)
T cd03262 95 ENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEP------------ 162 (213)
T ss_pred HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCC------------
Confidence 2222110 000 0011122222222222 2466789999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
...+++.........+ .+ -++||++||..+....++|.+++++.|++
T Consensus 163 ---------~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 163 ---------TSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred ---------ccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 3333333222111100 00 14699999999999999999999999863
No 90
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.3e-21 Score=183.58 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=112.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-------------cchhh-----------hh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-------------RRVAA-----------MS 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-------------~~i~~-----------~~ 195 (350)
+.+++..++.+|++++|+|+|||||||++++++|+. .+.+|+|.+... +.+++ .+
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-KPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 456677889999999999999999999999999987 455788755310 01111 12
Q ss_pred HHHHHHHHh---ccc---ccchhhhhhhcccCC---CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 196 VAKRVAEEF---GCR---LGQEVGYTIRFEDCT---SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 196 ~~~~v~~~~---~~~---~~~~v~~~~~~~~~~---~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
+.++++... +.. ....+...+...+.. ..++.+..||+||+||++||+||+.+|++||||||
T Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEP--------- 171 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEP--------- 171 (287)
T ss_pred HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC---------
Confidence 223332111 110 011233334443442 13577889999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++......... ..+ -++||++||+.+....++|.+++++.|++..
T Consensus 172 ------------t~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~ 225 (287)
T PRK13637 172 ------------TAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL 225 (287)
T ss_pred ------------ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 444444433222110 001 1479999999999989999999999999864
No 91
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.3e-21 Score=178.96 Aligned_cols=165 Identities=16% Similarity=0.232 Sum_probs=110.4
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchh----------hhhHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVA----------AMSVAKR 199 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~----------~~~~~~~ 199 (350)
.+++...+++|++++|+|+|||||||++++++|... +.+|+|.+... ..++ ..++.++
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 95 (242)
T cd03295 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEEN 95 (242)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHH
Confidence 456777899999999999999999999999999874 55788765321 0111 1222333
Q ss_pred HHHH---hccc---ccchhhhhhhcccCCC---ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccCh
Q psy9590 200 VAEE---FGCR---LGQEVGYTIRFEDCTS---SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDP 270 (350)
Q Consensus 200 v~~~---~~~~---~~~~v~~~~~~~~~~~---~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~ 270 (350)
+... .+.. ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP------------- 162 (242)
T cd03295 96 IALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP------------- 162 (242)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC-------------
Confidence 3211 0100 0112222333333332 2467789999999999999999999999999999
Q ss_pred hHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 271 TKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 271 l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ...+ -++||++||..+....++|.+++++.|++.+
T Consensus 163 --------t~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (242)
T cd03295 163 --------FGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ 216 (242)
T ss_pred --------cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 33333332221111 0000 1469999999999999999999999999854
No 92
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.85 E-value=1.3e-21 Score=174.89 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=108.9
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc---------chh----------hhhHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR---------RVA----------AMSVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~---------~i~----------~~~~~~~v 200 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .++ ..++.+++
T Consensus 15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 93 (208)
T cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence 3556677889999999999999999999999999874 558887663210 011 11222222
Q ss_pred HHHhcc--cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhh
Q psy9590 201 AEEFGC--RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFK 277 (350)
Q Consensus 201 ~~~~~~--~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~ 277 (350)
...... .....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP-------------------- 153 (208)
T cd03268 94 RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP-------------------- 153 (208)
T ss_pred HHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC--------------------
Confidence 211100 00112222223332222 2456778999999999999999999999999999
Q ss_pred hcCcccceeccCCcc---cccc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 278 KNQRLEPLYNKYEEP---NAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 278 ~~~~v~~~~~~~~~~---~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..++......... ..++ -.+||++||..+....++|.+++++.|++.
T Consensus 154 -t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 154 -TNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred -cccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 33333333221111 0000 146999999999999999999999999874
No 93
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.85 E-value=1.1e-21 Score=176.28 Aligned_cols=163 Identities=9% Similarity=-0.022 Sum_probs=106.1
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEE-EcCC--------cchhhhhHHHHHHHHh---ccccc
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIG-CTQP--------RRVAAMSVAKRVAEEF---GCRLG 209 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~-~~~~--------~~i~~~~~~~~v~~~~---~~~~~ 209 (350)
+++...+++|++++|+|+|||||||++++++|... +.+|+|. +... .-...++..+++.... +....
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~ 82 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-PDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGD 82 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHH
Confidence 45677899999999999999999999999999874 5688875 4221 1111233444443221 11110
Q ss_pred chhhhhhhcccCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceecc
Q psy9590 210 QEVGYTIRFEDCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNK 288 (350)
Q Consensus 210 ~~v~~~~~~~~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~ 288 (350)
+.........+.. ..++.+..||+||+||+++|++++.+|+++|+||| ...++.....
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP---------------------~~~lD~~~~~ 141 (213)
T PRK15177 83 EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGK---------------------LYTGDNATQL 141 (213)
T ss_pred HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCC---------------------CccCCHHHHH
Confidence 0011111122221 13467889999999999999999999999999999 2222221111
Q ss_pred CCccc---ccceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 289 YEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 289 ~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
..... ..+-+++|++||..+....++|.+++++.|++.
T Consensus 142 ~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 142 RMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKIT 182 (213)
T ss_pred HHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEE
Confidence 00000 000134899999999998999999999999884
No 94
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.85 E-value=1.3e-21 Score=176.66 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=108.6
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhhh----------hHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAAM----------SVAK 198 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~~----------~~~~ 198 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+... +.++++ ++.+
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEE 94 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHH
Confidence 456778899999999999999999999999999884 55888765321 011111 1222
Q ss_pred HHHHHhccc----ccchhhhhhhcc-cCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 199 RVAEEFGCR----LGQEVGYTIRFE-DCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 199 ~v~~~~~~~----~~~~v~~~~~~~-~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
++....... ....+...+... ... ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP--------------- 159 (222)
T cd03224 95 NLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP--------------- 159 (222)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC---------------
Confidence 222111000 001111122222 111 12466778999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCcccc---c-ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNA---W-RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~---~-~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+ + .-.+||++||+.+....++|.+++++.|++..
T Consensus 160 ------t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (222)
T cd03224 160 ------SEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL 212 (222)
T ss_pred ------cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE
Confidence 3344433322211100 0 01469999999999999999999999998854
No 95
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.9e-21 Score=176.91 Aligned_cols=165 Identities=21% Similarity=0.222 Sum_probs=109.1
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------------chhh----------hhH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------------RVAA----------MSV 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------------~i~~----------~~~ 196 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .+++ .++
T Consensus 21 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (233)
T cd03258 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTV 99 (233)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcH
Confidence 456677899999999999999999999999999984 558888663210 0111 122
Q ss_pred HHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 197 AKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 197 ~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.+++.... +.. ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP------------ 167 (233)
T cd03258 100 FENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEA------------ 167 (233)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC------------
Confidence 22222111 000 0011222222222222 2356778999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
...+++........ ...+ -++||++||..+....++|.+++++.|++.+
T Consensus 168 ---------~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (233)
T cd03258 168 ---------TSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE 221 (233)
T ss_pred ---------CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 44444433222111 0001 1469999999999889999999999999853
No 96
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=1.7e-22 Score=179.49 Aligned_cols=171 Identities=15% Similarity=0.111 Sum_probs=118.3
Q ss_pred ccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc----------------------CCcc
Q psy9590 133 QSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT----------------------QPRR 190 (350)
Q Consensus 133 ~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~----------------------~~~~ 190 (350)
+++.-..+.+++..++++|++++|+|||||||||+++++.|.+. +++|+|.+. .++.
T Consensus 12 k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl 90 (250)
T COG0411 12 KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRL 90 (250)
T ss_pred eecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-CCCceEEECCcccCCCCHHHHHhccceeecccccc
Confidence 34444556778889999999999999999999999999999994 558888663 1223
Q ss_pred hhhhhHHHHHHHHhc----------c--------cccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcE
Q psy9590 191 VAAMSVAKRVAEEFG----------C--------RLGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSV 251 (350)
Q Consensus 191 i~~~~~~~~v~~~~~----------~--------~~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~v 251 (350)
+..+++.+++.-... . ...+.....+.+.+.... +.....||+|+++++.||+||+.+|++
T Consensus 91 F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~l 170 (250)
T COG0411 91 FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKL 170 (250)
T ss_pred cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCE
Confidence 333444444432211 0 011122233444444443 367778999999999999999999999
Q ss_pred EEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 252 IMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 252 iIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
|+|||| ..++.+.-..+....+. + -.+|++--|++.....+||+++|+|.|++
T Consensus 171 LLLDEP---------------------aAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 171 LLLDEP---------------------AAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228 (250)
T ss_pred EEecCc---------------------cCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcC
Confidence 999999 33332222111111000 1 15799999999999999999999999986
No 97
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1e-21 Score=183.00 Aligned_cols=166 Identities=17% Similarity=0.142 Sum_probs=111.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhh-----------hhHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAA-----------MSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~-----------~~~~ 197 (350)
+.+++..++++|++++|+|+|||||||++++++|+.. +.+|+|.+... +.+++ .++.
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 98 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW 98 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence 4566778899999999999999999999999999884 55888865321 01111 1222
Q ss_pred HHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccCh
Q psy9590 198 KRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDP 270 (350)
Q Consensus 198 ~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~ 270 (350)
+++.... +.. ....+...+...+... .++.+..||+||+||++||+||+.+|++||||||
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP------------- 165 (274)
T PRK13647 99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP------------- 165 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC-------------
Confidence 2222110 000 0011222233333322 2466789999999999999999999999999999
Q ss_pred hHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 271 TKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 271 l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ ++ -.+||++||+.+....++|.+++++.|.+.+
T Consensus 166 --------t~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (274)
T PRK13647 166 --------MAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA 218 (274)
T ss_pred --------CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 4444444332221100 00 1479999999999989999999999999853
No 98
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.5e-21 Score=174.89 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=107.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc----------chhh----------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR----------RVAA----------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~----------~i~~----------~~~~~~ 199 (350)
+.+++...+++| +++|+|+|||||||++++++|+.. +.+|+|.+.... .+++ .++.++
T Consensus 15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (211)
T cd03264 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF 92 (211)
T ss_pred EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence 355677788899 999999999999999999999874 558888663210 0111 122222
Q ss_pred HHHH---hccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 200 VAEE---FGCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 200 v~~~---~~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+... .+.. ..+.+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP--------------- 157 (211)
T cd03264 93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP--------------- 157 (211)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC---------------
Confidence 2211 0100 0111222223222222 2466789999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++........ ..+.-.+||++||+.+....++|.+++++.|.+.
T Consensus 158 ------t~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 158 ------TAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208 (211)
T ss_pred ------cccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 33333332211111 0000146999999999988899999999999874
No 99
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.84 E-value=1.1e-21 Score=176.13 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=106.4
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------------chhh----------hhH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------------RVAA----------MSV 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------------~i~~----------~~~ 196 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .+++ .++
T Consensus 17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~ 95 (214)
T cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNV 95 (214)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcH
Confidence 456677889999999999999999999999999874 558888663210 0111 111
Q ss_pred HHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 197 AKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 197 ~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.+++.... +.. ..+.+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP------------ 163 (214)
T cd03292 96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEP------------ 163 (214)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC------------
Confidence 22222110 000 0011222222222221 2356779999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
+..+++...+.....+. .-.+||++||..+....++|.+++++.|++
T Consensus 164 ---------t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 164 ---------TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred ---------CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 44444333222211000 014699999999999889999999999863
No 100
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.5e-21 Score=190.12 Aligned_cols=165 Identities=19% Similarity=0.257 Sum_probs=112.6
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------------cchhh----------hh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------------RRVAA----------MS 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------------~~i~~----------~~ 195 (350)
.+++..++++|++++|+|+||||||||+++++++.. +.+|+|.+... +.+++ .+
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE-PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 567788999999999999999999999999999984 55888866321 01111 23
Q ss_pred HHHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.+++.... +.. ..+.+...+...+... .++.+..||+||+||++||+||+.+|++||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP----------- 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEA----------- 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECC-----------
Confidence 334443221 111 0112222333333322 3467789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
...+++.........+. + -++||++||+.+....++|.+++++.|++.+
T Consensus 192 ----------ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~ 245 (400)
T PRK10070 192 ----------FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245 (400)
T ss_pred ----------CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe
Confidence 33444333222211110 0 1469999999999999999999999998853
No 101
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.84 E-value=2.1e-21 Score=187.88 Aligned_cols=166 Identities=16% Similarity=0.230 Sum_probs=113.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---cc----------------hhh-------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---RR----------------VAA------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---~~----------------i~~------- 193 (350)
..+++..++++|++++|+|+|||||||++++++|+.. +++|+|.+... .. +++
T Consensus 39 ~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 39 GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 3566788899999999999999999999999999984 55888877421 01 111
Q ss_pred ---hhHHHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 194 ---MSVAKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 194 ---~~~~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
.++.++++... +.. ....+...+...+... .+..+..|||||+||+.||++|+.+|+++|||||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEP------ 191 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEP------ 191 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC------
Confidence 12334433221 110 0112222333333322 2466789999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
...+++.........+. + -++||++||+.+....++|.+++++.|.+.+
T Consensus 192 ---------------ts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~ 245 (382)
T TIGR03415 192 ---------------FSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ 245 (382)
T ss_pred ---------------CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 33444333322211110 0 1579999999999999999999999999865
No 102
>PRK10908 cell division protein FtsE; Provisional
Probab=99.84 E-value=2e-21 Score=175.57 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=107.5
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--c------------chhh----------hhH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--R------------RVAA----------MSV 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--~------------~i~~----------~~~ 196 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... . .+++ .++
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 96 (222)
T PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTV 96 (222)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccH
Confidence 456777899999999999999999999999999884 55888866321 0 0111 111
Q ss_pred HHHHHHHh---cccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 197 AKRVAEEF---GCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 197 ~~~v~~~~---~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.+++.... +... ...+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP------------ 164 (222)
T PRK10908 97 YDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEP------------ 164 (222)
T ss_pred HHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC------------
Confidence 22222110 0000 001112222222222 2456779999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCcc---cccc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEP---NAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..++....+.... ...+ -.+||++||+.+....++|.+++++.|++.
T Consensus 165 ---------t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 165 ---------TGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred ---------CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 44444332221111 0000 146999999999999999999999999873
No 103
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=1.7e-22 Score=174.04 Aligned_cols=167 Identities=17% Similarity=0.176 Sum_probs=111.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhH-----------------------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSV----------------------- 196 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~----------------------- 196 (350)
+.+++...+++||+++|+||||+||||.+.++.|+.. +++|+|.+. ...++.++.
T Consensus 19 Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-~d~G~i~ld-~~diT~lPm~~RArlGigYLpQE~SIFr~LtV 96 (243)
T COG1137 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-PDSGKILLD-DEDITKLPMHKRARLGIGYLPQEASIFRKLTV 96 (243)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-cCCceEEEC-CcccccCChHHHhhcCcccccccchHhhcCcH
Confidence 3556778899999999999999999999999999985 558999774 222222222
Q ss_pred HHHHHHHhccc--c----cc--hhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 197 AKRVAEEFGCR--L----GQ--EVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 197 ~~~v~~~~~~~--~----~~--~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
.+++.-.+... . .. .+...+.-+.... .+.+...||||+|+|+.|||||+.+|++++||||
T Consensus 97 ~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEP---------- 166 (243)
T COG1137 97 EDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEP---------- 166 (243)
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCC----------
Confidence 22221111100 0 00 1112222222222 2345568999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccccc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
|-|..|+.+.-.+.....+.. --.|+++.|+..+-+.|||+.|+|..|.+.
T Consensus 167 --------FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl 218 (243)
T COG1137 167 --------FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL 218 (243)
T ss_pred --------ccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE
Confidence 444555444333322111110 035999999999999999999999999884
No 104
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.84 E-value=2.6e-21 Score=175.27 Aligned_cols=166 Identities=20% Similarity=0.218 Sum_probs=108.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC----CCCCcEEEEcCCc-------------chhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG----FTARGKIGCTQPR-------------RVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~----~~~~G~i~~~~~~-------------~i~~--------- 193 (350)
+.+++..++++|++++|+|+|||||||++++++|... .+.+|+|.+.... .+++
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 94 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP 94 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhcc
Confidence 3556778899999999999999999999999999871 3457888663210 0111
Q ss_pred hhHHHHHHHHh---ccc----ccchhhhhhhcccCCCc-ccc--ccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 194 MSVAKRVAEEF---GCR----LGQEVGYTIRFEDCTSS-ETL--IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 194 ~~~~~~v~~~~---~~~----~~~~v~~~~~~~~~~~~-~~~--i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
.++.+++.... +.. ....+...+...+.... +.. +..||+||+||++||++++.+|+++|||||
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP------ 168 (227)
T cd03260 95 GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEP------ 168 (227)
T ss_pred ccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC------
Confidence 11222221110 000 00112222333333222 234 488999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..++..........+. +-.+||++||+.+....++|.+++++.|++.
T Consensus 169 ---------------t~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 169 ---------------TSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred ---------------CccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 44444433322211111 0146999999999999999999999999874
No 105
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.84 E-value=1.9e-21 Score=175.99 Aligned_cols=165 Identities=12% Similarity=0.164 Sum_probs=110.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------ch---hhhhHHHHHHHH---hccc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------RV---AAMSVAKRVAEE---FGCR 207 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------~i---~~~~~~~~v~~~---~~~~ 207 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .. ...++.+++... .+..
T Consensus 37 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~ 115 (224)
T cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-PDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLS 115 (224)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCC
Confidence 3567788999999999999999999999999999874 568888663210 01 112333443321 1111
Q ss_pred c---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCccc
Q psy9590 208 L---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLE 283 (350)
Q Consensus 208 ~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~ 283 (350)
. .+.+...++..+... .++.+..||+||+||++||++++.+|+++||||| ...++
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP---------------------~~gLD 174 (224)
T cd03220 116 RKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV---------------------LAVGD 174 (224)
T ss_pred HHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC---------------------cccCC
Confidence 0 011222233333322 2467789999999999999999999999999999 33333
Q ss_pred ceeccCCcc---cccc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 284 PLYNKYEEP---NAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 284 ~~~~~~~~~---~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+........ ..++ -.+||++||..+....++|.+++++.|++.
T Consensus 175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 221 (224)
T cd03220 175 AAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 322111110 0001 146999999999999999999999999874
No 106
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.1e-21 Score=182.08 Aligned_cols=166 Identities=16% Similarity=0.159 Sum_probs=111.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc---------------chhh-----------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR---------------RVAA----------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~---------------~i~~----------- 193 (350)
+.+++..++.+|++++|+|+||||||||+++++|... +.+|+|.+.... .+.+
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 100 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE 100 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence 3567778899999999999999999999999999884 558887663210 0111
Q ss_pred hhHHHHHHHHh---ccc---ccchhhhhhhcccCC-C-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 194 MSVAKRVAEEF---GCR---LGQEVGYTIRFEDCT-S-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 194 ~~~~~~v~~~~---~~~---~~~~v~~~~~~~~~~-~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
.++.+++.... +.. ....+...+...+.. . .++.+..||+||+||++||++++.+|++||||||
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEP-------- 172 (287)
T PRK13641 101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEP-------- 172 (287)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC--------
Confidence 11222222110 000 001122223333332 2 3577889999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCcc---cccc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ...+ -.+||++||+.+....+||.+++++.|++..
T Consensus 173 -------------t~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~ 225 (287)
T PRK13641 173 -------------AAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225 (287)
T ss_pred -------------CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 34444333221111 0000 1469999999999999999999999999853
No 107
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.5e-21 Score=176.14 Aligned_cols=165 Identities=18% Similarity=0.230 Sum_probs=108.5
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~~v 200 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+... +.++++ ++.+++
T Consensus 19 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 97 (241)
T PRK14250 19 LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNI 97 (241)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHH
Confidence 456777899999999999999999999999999874 55888866321 011111 111222
Q ss_pred HHH--hcccccchhhhhhhcccCC-C-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhh
Q psy9590 201 AEE--FGCRLGQEVGYTIRFEDCT-S-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKF 276 (350)
Q Consensus 201 ~~~--~~~~~~~~v~~~~~~~~~~-~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~ 276 (350)
... ........+...+...+.. . .++.+..||+||+||++||++++.+|+++|||||
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP------------------- 158 (241)
T PRK14250 98 EYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP------------------- 158 (241)
T ss_pred hcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC-------------------
Confidence 110 0000001122223333332 1 2456778999999999999999999999999999
Q ss_pred hhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 277 KKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 277 ~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++.......... ..+ -.+||++||+.+....++|.+++++.|.+.+
T Consensus 159 --t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (241)
T PRK14250 159 --TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE 212 (241)
T ss_pred --cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 333333322211110 000 1469999999999889999999999998854
No 108
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.7e-21 Score=176.13 Aligned_cols=167 Identities=19% Similarity=0.244 Sum_probs=109.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCC-----------cch----------hhh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQP-----------RRV----------AAM 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~-----------~~i----------~~~ 194 (350)
+.+++..++++|++++|+|+|||||||+++++.|...+ +.+|+|.+... +.+ ...
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 97 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNL 97 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCC
Confidence 35677889999999999999999999999999998753 35788765311 011 112
Q ss_pred hHHHHHHHHhcc-----c---ccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 195 SVAKRVAEEFGC-----R---LGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 195 ~~~~~v~~~~~~-----~---~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
++.+++...... . ..+.+...+...+.. ..++.+..||+||+||+++|++++.+|+++|||||
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP---- 173 (250)
T PRK14247 98 SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEP---- 173 (250)
T ss_pred cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC----
Confidence 233333321110 0 001122222222221 12466789999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++......... ..+-++||++||..+....++|.+++++.|++..
T Consensus 174 -----------------~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 174 -----------------TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred -----------------CccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 333333322211110 0001469999999999989999999999999854
No 109
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.84 E-value=3e-21 Score=176.54 Aligned_cols=166 Identities=14% Similarity=0.138 Sum_probs=110.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------------chhh----------hhHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------------RVAA----------MSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------------~i~~----------~~~~ 197 (350)
+.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+.... .+++ .++.
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 95 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF 95 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHH
Confidence 3566778899999999999999999999999999874 558887664210 0111 1222
Q ss_pred HHHHHHhccc--------------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 198 KRVAEEFGCR--------------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 198 ~~v~~~~~~~--------------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
+++....... ....+...+...+... .++.+..||+||+||++||++++.+|++++||||
T Consensus 96 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEP----- 170 (242)
T TIGR03411 96 ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEP----- 170 (242)
T ss_pred HHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC-----
Confidence 3222211000 0011222233323322 2467789999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++...+.....+ .+-++||++||..+....++|.+++++.|++..
T Consensus 171 ----------------t~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~ 222 (242)
T TIGR03411 171 ----------------VAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA 222 (242)
T ss_pred ----------------ccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEe
Confidence 3344333322211100 001469999999999989999999999999853
No 110
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.7e-21 Score=178.37 Aligned_cols=166 Identities=17% Similarity=0.229 Sum_probs=110.7
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC---------------C-cchhhhhHHHHHHHHh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ---------------P-RRVAAMSVAKRVAEEF 204 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~---------------~-~~i~~~~~~~~v~~~~ 204 (350)
.+++...+++|++++|+|+||||||||+++++|+.. +.+|+|.+.. . .-....++.+++....
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~ 95 (255)
T PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-YQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGL 95 (255)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHH
Confidence 456777899999999999999999999999999874 5578875521 0 0011123334443211
Q ss_pred ---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhh
Q psy9590 205 ---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFK 277 (350)
Q Consensus 205 ---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~ 277 (350)
+.. ....+...+...+... .++.+..||+||+||++||++++.+|++||||||
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP-------------------- 155 (255)
T PRK11248 96 QLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP-------------------- 155 (255)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC--------------------
Confidence 111 0112223333333322 2356789999999999999999999999999999
Q ss_pred hcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEe--CCeeeeE
Q psy9590 278 KNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVD--PGFVKQK 328 (350)
Q Consensus 278 ~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid--~G~~~~~ 328 (350)
+..+++........ ..++ -.+||++||+.+....++|.+++++ .|++.+.
T Consensus 156 -t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 156 -FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred -CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 33444333222111 0000 1469999999999999999999998 4887654
No 111
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.84 E-value=3.5e-21 Score=175.53 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=107.7
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchh----------hhhHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVA----------AMSVAKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~----------~~~~~~~v 200 (350)
.+++...+.+|++++|+|+||||||||+++++|... +.+|.|.+... +.++ ..++.+++
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l 95 (236)
T TIGR03864 17 LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNL 95 (236)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHH
Confidence 456777899999999999999999999999999874 55787755310 0111 11222333
Q ss_pred HHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHH
Q psy9590 201 AEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKL 273 (350)
Q Consensus 201 ~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~ 273 (350)
.... +.. ....+...++..+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP---------------- 159 (236)
T TIGR03864 96 RYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEP---------------- 159 (236)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC----------------
Confidence 2111 100 0111222223223222 2467789999999999999999999999999999
Q ss_pred HhhhhcCcccceeccCCcc---ccc--ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 274 SKFKKNQRLEPLYNKYEEP---NAW--RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~~---~~~--~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
...+++........ ... +-.+||++||..+... .+|.+++++.|.+..
T Consensus 160 -----~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~i~~l~~G~i~~ 212 (236)
T TIGR03864 160 -----TVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE-ADDRLVVLHRGRVLA 212 (236)
T ss_pred -----ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh-hCCEEEEEeCCeEEE
Confidence 44444433322211 000 0146999999999886 599999999998854
No 112
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.84 E-value=3.5e-21 Score=174.81 Aligned_cols=166 Identities=14% Similarity=0.159 Sum_probs=109.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhhh----------hHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAAM----------SVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~~----------~~~ 197 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... +.+++. ++.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE 93 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence 3567788899999999999999999999999999884 55888866321 011111 112
Q ss_pred HHHHHHhc---ccccchhhhhhhccc-CC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 198 KRVAEEFG---CRLGQEVGYTIRFED-CT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 198 ~~v~~~~~---~~~~~~v~~~~~~~~-~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+++..... ..........+...+ .. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEP--------------- 158 (230)
T TIGR03410 94 ENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP--------------- 158 (230)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC---------------
Confidence 22221110 000001111122221 11 13466778999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ..++ -++||++||..+....++|.+++++.|++.+
T Consensus 159 ------t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~ 212 (230)
T TIGR03410 159 ------TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA 212 (230)
T ss_pred ------cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 44444443332211 0111 1469999999999988999999999998854
No 113
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.84 E-value=7.1e-21 Score=183.54 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=109.4
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------------cchh----------hhhHH
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------------RRVA----------AMSVA 197 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------------~~i~----------~~~~~ 197 (350)
++..++++|++++|+|+|||||||++++++|+.. +.+|+|.+... +.++ .+++.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 4566788999999999999999999999999984 45787755210 0111 12333
Q ss_pred HHHHHHhccc----ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 198 KRVAEEFGCR----LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 198 ~~v~~~~~~~----~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
++++...... ....+...+...+... .++.+..||+||+||++||+||+.+|++||||||
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEP--------------- 158 (354)
T TIGR02142 94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP--------------- 158 (354)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC---------------
Confidence 4443221100 0011223333333322 2467789999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+ .+ -.+||++||+.+....++|.+++++.|++..
T Consensus 159 ------ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 212 (354)
T TIGR02142 159 ------LAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA 212 (354)
T ss_pred ------CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 3344433322211100 00 1469999999999999999999999999864
No 114
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.84 E-value=2.3e-21 Score=169.87 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=101.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFE 219 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~ 219 (350)
+.+++..++++|++++|+|+|||||||+++++.|... +.+|+|.+.. ..+.............+.-. +.... ..+.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g-~~~~~~~~~~~~~~~i~~~~-q~~~~-~~~~ 90 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDG-KPVTRRSPRDAIRAGIAYVP-EDRKR-EGLV 90 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECC-EECCccCHHHHHhCCeEEec-CCccc-Cccc
Confidence 4567778899999999999999999999999999984 5689988743 22221111111100000000 00000 0000
Q ss_pred cCCCccccc---cccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc---
Q psy9590 220 DCTSSETLI---KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN--- 293 (350)
Q Consensus 220 ~~~~~~~~i---~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~--- 293 (350)
........+ ..||+||+||++||++++.+|+++||||| ...++....+.....
T Consensus 91 ~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP---------------------~~~LD~~~~~~l~~~l~~ 149 (182)
T cd03215 91 LDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEP---------------------TRGVDVGAKAEIYRLIRE 149 (182)
T ss_pred CCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCC---------------------CcCCCHHHHHHHHHHHHH
Confidence 000000001 12999999999999999999999999999 333333322221110
Q ss_pred ccc-eeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 294 AWR-ISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 294 ~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
..+ -+++|++||..++...++|.+++++.|++
T Consensus 150 ~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 150 LADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 000 14699999999999999999999999863
No 115
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.84 E-value=4.5e-21 Score=176.03 Aligned_cols=166 Identities=20% Similarity=0.214 Sum_probs=108.9
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCC-----CcEEEEcCC-------------cchhh--------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTA-----RGKIGCTQP-------------RRVAA-------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~-----~G~i~~~~~-------------~~i~~-------- 193 (350)
+.+++..++++|++++|+|+|||||||+++.++|... +. +|+|.+... +.+++
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-LVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 3566788899999999999999999999999999874 33 788765311 01111
Q ss_pred -hhHHHHHHHHh---cc-c---ccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 194 -MSVAKRVAEEF---GC-R---LGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 194 -~~~~~~v~~~~---~~-~---~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
.++.+++.... +. . ....+...+...+.. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP--- 171 (247)
T TIGR00972 95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP--- 171 (247)
T ss_pred CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC---
Confidence 12223332111 10 0 001112222222222 12466789999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++......... ..+-.+||++||..+....++|.+++++.|++..
T Consensus 172 ------------------t~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 172 ------------------TSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE 223 (247)
T ss_pred ------------------cccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 333333322211110 0001469999999999999999999999998853
No 116
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3e-21 Score=177.95 Aligned_cols=166 Identities=19% Similarity=0.159 Sum_probs=109.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc----------c--hh----------hhhHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR----------R--VA----------AMSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~----------~--i~----------~~~~~ 197 (350)
+.+++..++++|++++|+|+|||||||++++++|+.. +.+|.|.+.... + +. ..++.
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVI 98 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHH
Confidence 3456778899999999999999999999999999974 557877653210 0 11 11222
Q ss_pred HHHHHHhc----------c------c-c----cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEc
Q psy9590 198 KRVAEEFG----------C------R-L----GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLD 255 (350)
Q Consensus 198 ~~v~~~~~----------~------~-~----~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlD 255 (350)
+++..... . . . ...+...+...+... .++.+..||+||+||++||++++.+|++||||
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 178 (255)
T PRK11300 99 ENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178 (255)
T ss_pred HHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 33221100 0 0 0 001111122222221 24667799999999999999999999999999
Q ss_pred CCCccccccccccChhHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 256 EAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 256 Epher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
|| +..+++.........+. + -.+||++||..+....++|.+++++.|++..
T Consensus 179 EP---------------------t~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 179 EP---------------------AAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred CC---------------------ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence 99 44444443322211110 0 1469999999999999999999999999863
No 117
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.84 E-value=1.4e-21 Score=168.89 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=100.3
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhccc
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFED 220 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~ 220 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+...+.+++.+....+ . ...+...+.+.
T Consensus 17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~i~~~~q~~~~---~----~~tv~~nl~~~- 87 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-WGSGRIGMPEGEDLLFLPQRPYL---P----LGTLREQLIYP- 87 (166)
T ss_pred eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCCceEEEECCCCcc---c----cccHHHHhhcc-
Confidence 456778899999999999999999999999999874 55898887543334433321110 0 01122222111
Q ss_pred CCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccc-eeE
Q psy9590 221 CTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR-ISR 299 (350)
Q Consensus 221 ~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 299 (350)
....||+||+||+++|++++.+|+++||||| +..+++...+.....+.+ -.+
T Consensus 88 ------~~~~LS~G~~~rv~laral~~~p~~lllDEP---------------------t~~LD~~~~~~l~~~l~~~~~t 140 (166)
T cd03223 88 ------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEA---------------------TSALDEESEDRLYQLLKELGIT 140 (166)
T ss_pred ------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECC---------------------ccccCHHHHHHHHHHHHHhCCE
Confidence 3467999999999999999999999999999 333333222211110000 046
Q ss_pred EEEEecccccccccCCEEEEEeCC
Q psy9590 300 VVIATNIAETSLTIDGIFYVVDPG 323 (350)
Q Consensus 300 vi~sT~iae~s~ti~d~~~vid~G 323 (350)
+|++||..+. ..++|.+++++.|
T Consensus 141 iiivsh~~~~-~~~~d~i~~l~~~ 163 (166)
T cd03223 141 VISVGHRPSL-WKFHDRVLDLDGE 163 (166)
T ss_pred EEEEeCChhH-HhhCCEEEEEcCC
Confidence 9999999986 4799999999876
No 118
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.84 E-value=2.8e-21 Score=178.44 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=110.1
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------------------------chhh---
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------------------------RVAA--- 193 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------------------------~i~~--- 193 (350)
.+++..++++|++++|+|+||||||||+++++|... +.+|+|.+.... .+.+
T Consensus 21 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q 99 (257)
T PRK10619 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ 99 (257)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEec
Confidence 456777899999999999999999999999999874 557887653210 1111
Q ss_pred -------hhHHHHHHHH----hccc---ccchhhhhhhcccCCCc--cccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 194 -------MSVAKRVAEE----FGCR---LGQEVGYTIRFEDCTSS--ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 194 -------~~~~~~v~~~----~~~~---~~~~v~~~~~~~~~~~~--~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
.++.+++... .+.. ....+...+...+.... +..+..||+||+||++||++|+.+|+++|||||
T Consensus 100 ~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 179 (257)
T PRK10619 100 HFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEP 179 (257)
T ss_pred CcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1223333210 0000 01122223333333321 456789999999999999999999999999999
Q ss_pred CccccccccccChhHHHhhhhcCcccceeccCCccc---ccc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 258 HERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 258 her~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++......... ..+ -.+||++||+.+....++|.+++++.|++..
T Consensus 180 ---------------------t~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 180 ---------------------TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232 (257)
T ss_pred ---------------------cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 334443332221110 000 1469999999999988999999999999864
No 119
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=3.8e-21 Score=175.72 Aligned_cols=166 Identities=13% Similarity=0.154 Sum_probs=109.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-------------chhh----------hhH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-------------RVAA----------MSV 196 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-------------~i~~----------~~~ 196 (350)
+.+++..++.+|++++|+|+|||||||++++++|.. .+.+|+|.+.... .+++ .++
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA 94 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence 355677889999999999999999999999999987 4558887653210 0111 122
Q ss_pred HHHHHHHh----ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 197 AKRVAEEF----GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 197 ~~~v~~~~----~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
.+++.... +.. ....+...+...+... .+..+..||+||+||++||++++.+|+++|||||
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP----------- 163 (240)
T PRK09493 95 LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEP----------- 163 (240)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC-----------
Confidence 22222110 000 0011222222222222 2456778999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccc---ccc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPN---AWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~---~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++......... .++ -++||++||..+....++|.+++++.|++..
T Consensus 164 ----------~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (240)
T PRK09493 164 ----------TSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE 216 (240)
T ss_pred ----------cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 334443332221110 001 1469999999999989999999999998853
No 120
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.84 E-value=3.4e-21 Score=173.79 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=104.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------------cchhhh----------h
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------------RRVAAM----------S 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------------~~i~~~----------~ 195 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... +.++++ +
T Consensus 21 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 99 (221)
T TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFT 99 (221)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCc
Confidence 455677899999999999999999999999999974 55888866321 011111 1
Q ss_pred HHHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.+++.... ... ..+.+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 100 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP----------- 168 (221)
T TIGR02211 100 ALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEP----------- 168 (221)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC-----------
Confidence 122221100 000 0011222222222222 2456779999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
+..++..........+ ++ -.+||++||+.+.... +|.+++++.|++
T Consensus 169 ----------t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 169 ----------TGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred ----------CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEe
Confidence 4444433322221110 00 1469999999998755 699999999976
No 121
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.84 E-value=2.8e-21 Score=167.96 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=99.1
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhccc
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFED 220 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~ 220 (350)
.+++...+++|++++|+|+|||||||+++.++|... +.+|+|.+. ...+...+... .... +++......
T Consensus 18 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~-g~~~~~~~~~~-~~~~--------i~~~~q~~~ 86 (173)
T cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLD-GADISQWDPNE-LGDH--------VGYLPQDDE 86 (173)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEEC-CEEcccCCHHH-HHhh--------eEEECCCCc
Confidence 455677889999999999999999999999999984 568999874 33332221111 1111 111100000
Q ss_pred CCCccccccc-cChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc---c
Q psy9590 221 CTSSETLIKY-MTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R 296 (350)
Q Consensus 221 ~~~~~~~i~~-lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~ 296 (350)
... .+.... ||+||+||++||++++.+|+++||||| +..+++.......+.+. +
T Consensus 87 ~~~-~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEP---------------------t~~LD~~~~~~l~~~l~~~~~ 144 (173)
T cd03246 87 LFS-GSIAENILSGGQRQRLGLARALYGNPRILVLDEP---------------------NSHLDVEGERALNQAIAALKA 144 (173)
T ss_pred ccc-CcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECC---------------------ccccCHHHHHHHHHHHHHHHh
Confidence 000 011111 999999999999999999999999999 33444333222111000 0
Q ss_pred -eeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 297 -ISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 297 -~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
-++||++||..+.. ..+|.+++++.|++
T Consensus 145 ~~~tii~~sh~~~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 145 AGATRIVIAHRPETL-ASADRILVLEDGRV 173 (173)
T ss_pred CCCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence 14699999999876 68999999999863
No 122
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=3e-21 Score=168.12 Aligned_cols=133 Identities=13% Similarity=0.119 Sum_probs=97.4
Q ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcc
Q psy9590 146 KAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSE 225 (350)
Q Consensus 146 ~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~ 225 (350)
..+++|++++|+|+|||||||++++++|.. .+.+|+|.+.. ..+. +.... .
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g-~~i~---------------------~~~q~-----~- 70 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQL-IPNGDNDEWDG-ITPV---------------------YKPQY-----I- 70 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCcEEEECC-EEEE---------------------EEccc-----C-
Confidence 478999999999999999999999999998 45689998742 2111 11000 0
Q ss_pred ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccc----cce-eEE
Q psy9590 226 TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA----WRI-SRV 300 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~----~~~-~~v 300 (350)
.||+||+||+++|++++.+|++++|||| +..+++.......... .+- .+|
T Consensus 71 ----~LSgGq~qrv~laral~~~p~lllLDEP---------------------ts~LD~~~~~~l~~~l~~~~~~~~~ti 125 (177)
T cd03222 71 ----DLSGGELQRVAIAAALLRNATFYLFDEP---------------------SAYLDIEQRLNAARAIRRLSEEGKKTA 125 (177)
T ss_pred ----CCCHHHHHHHHHHHHHhcCCCEEEEECC---------------------cccCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 1999999999999999999999999999 3333333222111100 011 359
Q ss_pred EEEecccccccccCCEEEEEeCCeeeeEeeec
Q psy9590 301 VIATNIAETSLTIDGIFYVVDPGFVKQKVYNS 332 (350)
Q Consensus 301 i~sT~iae~s~ti~d~~~vid~G~~~~~~~~~ 332 (350)
|++||..+....++|.+++++.+......|++
T Consensus 126 iivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~ 157 (177)
T cd03222 126 LVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQ 157 (177)
T ss_pred EEEECCHHHHHHhCCEEEEEcCCCccceeccC
Confidence 99999999999999999999988665455553
No 123
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.1e-21 Score=181.10 Aligned_cols=166 Identities=19% Similarity=0.200 Sum_probs=110.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc---------------chhh-----------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR---------------RVAA----------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~---------------~i~~----------- 193 (350)
+.+++..++.+|++++|+|+|||||||++++++|+.. +.+|.|.+..-. .+++
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 3457788899999999999999999999999999874 557877553100 0111
Q ss_pred hhHHHHHHHHh---ccc---ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 194 MSVAKRVAEEF---GCR---LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 194 ~~~~~~v~~~~---~~~---~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
.++.+.++... +.. ....+...+...+... .++.+..||+||+||++||++|+.+|++||||||
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEP-------- 171 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEP-------- 171 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECC--------
Confidence 12222222111 110 0011222233333321 2467789999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCccc---ccc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++......... ..+ -.+||++||+.+....++|.+++++.|.+..
T Consensus 172 -------------t~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~ 224 (288)
T PRK13643 172 -------------TAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS 224 (288)
T ss_pred -------------ccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 333333322211110 000 1469999999999989999999999999864
No 124
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.83 E-value=9.8e-21 Score=169.97 Aligned_cols=163 Identities=20% Similarity=0.244 Sum_probs=109.4
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cchh----------hhhHHHHHHHH
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRVA----------AMSVAKRVAEE 203 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i~----------~~~~~~~v~~~ 203 (350)
++..++.+|++++|+|+|||||||+++.++|... +.+|+|.+... +.++ ..+..+++...
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~ 94 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLG 94 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhH
Confidence 5677899999999999999999999999999874 55787765311 0111 12333443321
Q ss_pred hccc------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhh
Q psy9590 204 FGCR------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKF 276 (350)
Q Consensus 204 ~~~~------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~ 276 (350)
.... ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP------------------- 155 (213)
T TIGR01277 95 LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP------------------- 155 (213)
T ss_pred hhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC-------------------
Confidence 1000 0112222233333322 2466779999999999999999999999999999
Q ss_pred hhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 277 KKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 277 ~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++......... ..+ -++||++||..+....++|.+++++.|++.+
T Consensus 156 --t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 156 --FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred --CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 444444433222110 000 1469999999999889999999999998854
No 125
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.83 E-value=7.2e-21 Score=174.04 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=106.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC-CCCCcEEEEcCCc----------c--hhhh----------hHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG-FTARGKIGCTQPR----------R--VAAM----------SVA 197 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~-~~~~G~i~~~~~~----------~--i~~~----------~~~ 197 (350)
.+++...+++|++++|+|+||||||||+++++|... .+.+|+|.+.... + +++. +..
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~ 95 (243)
T TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNL 95 (243)
T ss_pred EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHH
Confidence 556788899999999999999999999999999852 3568888663210 0 1111 111
Q ss_pred HHHHHHhcc----------c---ccchhhhhhhcccCCC--cccccc-ccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 198 KRVAEEFGC----------R---LGQEVGYTIRFEDCTS--SETLIK-YMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 198 ~~v~~~~~~----------~---~~~~v~~~~~~~~~~~--~~~~i~-~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
+.+...... . ..+.+...+...+... .++.+. .||+||+||++||++++.+|+++|||||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP---- 171 (243)
T TIGR01978 96 EFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI---- 171 (243)
T ss_pred HHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC----
Confidence 222111000 0 0011222223333321 234554 5999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcccccc----eeEEEEEeccccccccc-CCEEEEEeCCeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR----ISRVVIATNIAETSLTI-DGIFYVVDPGFVK 326 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~----~~~vi~sT~iae~s~ti-~d~~~vid~G~~~ 326 (350)
+..++..........+.+ -.+||++||+.+....+ +|.+++++.|++.
T Consensus 172 -----------------t~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~ 224 (243)
T TIGR01978 172 -----------------DSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV 224 (243)
T ss_pred -----------------cccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE
Confidence 334443332221110000 14699999999999888 8999999999885
No 126
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.6e-21 Score=177.11 Aligned_cols=167 Identities=19% Similarity=0.196 Sum_probs=108.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCC-------------cchhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQP-------------RRVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~-------------~~i~~--------- 193 (350)
+.+++..++++|++++|+|+|||||||++++++|...+ +.+|+|.+... +.+++
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 106 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP 106 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc
Confidence 35667778999999999999999999999999998753 35788765210 00111
Q ss_pred hhHHHHHHHHh---cccc---cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 194 MSVAKRVAEEF---GCRL---GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 194 ~~~~~~v~~~~---~~~~---~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
.+..+++.... +... ...+...+...+.. ..++.+..||+||+||++||++|+.+|+++|||||
T Consensus 107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP----- 181 (258)
T PRK14268 107 MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEP----- 181 (258)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC-----
Confidence 12222222111 1000 01122222222221 12466789999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++.......... ..+-.+||++||+.+....++|.+++++.|++..
T Consensus 182 ----------------t~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 182 ----------------TSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred ----------------CcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 333333322211110 0001469999999999999999999999999854
No 127
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.83 E-value=3.3e-21 Score=173.75 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=103.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhh---------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAA---------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~---------~~~~~~ 199 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .+++ .++.+.
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 97 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDN 97 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHH
Confidence 3566777899999999999999999999999999874 558887663210 0111 111122
Q ss_pred HHHHhcccccchhhhhhhcccCCC------------ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRFEDCTS------------SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~~~~~~------------~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+...........+...+...+... ....+..||+||+||++||++++.+|+++|||||
T Consensus 98 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEP---------- 167 (220)
T cd03245 98 ITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEP---------- 167 (220)
T ss_pred hhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCc----------
Confidence 111000000001111111111100 1123468999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..++......... ..++-.+||++||+.+.. .++|.+++++.|.+.
T Consensus 168 -----------t~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 168 -----------TSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred -----------cccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEe
Confidence 33444333221111 000014699999999975 899999999999874
No 128
>KOG0921|consensus
Probab=99.83 E-value=8.5e-21 Score=191.20 Aligned_cols=221 Identities=33% Similarity=0.561 Sum_probs=182.7
Q ss_pred hhHHhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCC-Cc---EEEEcCCcchhhhhHHHHHH
Q psy9590 126 LTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTA-RG---KIGCTQPRRVAAMSVAKRVA 201 (350)
Q Consensus 126 ~~i~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~-~G---~i~~~~~~~i~~~~~~~~v~ 201 (350)
..+..+|..||+.+.+.+|+.++..+.+++|.|++||||||++-+.+.+.-... .| .+.+.+|+++.+++++++++
T Consensus 368 ~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva 447 (1282)
T KOG0921|consen 368 DKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVA 447 (1282)
T ss_pred hhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHH
Confidence 346788999999999999999999999999999999999999999887652211 11 34566999999999999999
Q ss_pred HHhcccccchhhhhhhcccCCCcc-ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh---------
Q psy9590 202 EEFGCRLGQEVGYTIRFEDCTSSE-TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT--------- 271 (350)
Q Consensus 202 ~~~~~~~~~~v~~~~~~~~~~~~~-~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l--------- 271 (350)
.+.+...++.++|..++.+..+.. ..+-+++-|..+|.. -+-+....++|.||.|||+.++|+++-++
T Consensus 448 ~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~--e~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~d 525 (1282)
T KOG0921|consen 448 NERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMM--ENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRD 525 (1282)
T ss_pred HhhHHhhcccccccccccccccccccceeeeccchhhhhh--hhcccccccccchhhhhhccchHHHHHHHHhhhccchh
Confidence 999999999999999999887654 677899999988875 34578899999999999999999998766
Q ss_pred -------------HHHhhhh----------cCcccceeccCCcc------------------------------------
Q psy9590 272 -------------KLSKFKK----------NQRLEPLYNKYEEP------------------------------------ 292 (350)
Q Consensus 272 -------------~~~~~~~----------~~~v~~~~~~~~~~------------------------------------ 292 (350)
.|..||+ ++|+..++......
T Consensus 526 l~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~ 605 (1282)
T KOG0921|consen 526 LRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILC 605 (1282)
T ss_pred hhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccccccc
Confidence 6666776 34444333211100
Q ss_pred ----------------------------------------------------ccc-------------------------
Q psy9590 293 ----------------------------------------------------NAW------------------------- 295 (350)
Q Consensus 293 ----------------------------------------------------~~~------------------------- 295 (350)
.+|
T Consensus 606 dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~ 685 (1282)
T KOG0921|consen 606 DPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLT 685 (1282)
T ss_pred ChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcc
Confidence 000
Q ss_pred -------------ceeEEEEEecccccccccCCEEEEEeCCeeeeEeeecCCCcceeeEeecccCC
Q psy9590 296 -------------RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDG 348 (350)
Q Consensus 296 -------------~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~~~~~~~l~~~~is~~~ 348 (350)
++.++|++||++|+++||.|++||+|+.+.+++.|-..+.+....+.|-||-+
T Consensus 686 ~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn 751 (1282)
T KOG0921|consen 686 SQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTN 751 (1282)
T ss_pred cHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccc
Confidence 34899999999999999999999999999999999999999999999999854
No 129
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4e-21 Score=177.24 Aligned_cols=165 Identities=18% Similarity=0.167 Sum_probs=108.7
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhhh----------hHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAAM----------SVAKR 199 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~~----------~~~~~ 199 (350)
.+++..++++|++++|+|+|||||||++++++|+.. +.+|.|.+.... .+++. ++.++
T Consensus 18 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 96 (255)
T PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVREL 96 (255)
T ss_pred EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHH
Confidence 456778899999999999999999999999999874 558887653210 01111 11222
Q ss_pred HHHH-------hcc---cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 200 VAEE-------FGC---RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 200 v~~~-------~~~---~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+... ++. .....+...+...+... .++.+..||+||+||++||+|++.+|+++|||||
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP----------- 165 (255)
T PRK11231 97 VAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEP----------- 165 (255)
T ss_pred HHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC-----------
Confidence 2110 000 00011222223322221 2466779999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. + -.+||++||..+....++|.+++++.|++..
T Consensus 166 ----------~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (255)
T PRK11231 166 ----------TTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA 218 (255)
T ss_pred ----------cccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE
Confidence 33444333222111000 0 1469999999999999999999999999853
No 130
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.83 E-value=5.5e-21 Score=175.67 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=108.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-------------------cchhh-------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-------------------RRVAA------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-------------------~~i~~------- 193 (350)
+.+++..++++|++++|+|+||||||||+++++|... +.+|.|.+... +.+++
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 3567788899999999999999999999999999874 55788755310 00111
Q ss_pred ---hhHHHHHHHH---h-ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 194 ---MSVAKRVAEE---F-GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 194 ---~~~~~~v~~~---~-~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
.++.+++... . +.. ....+...+...+... .++.+..||+||+||++||++++.+|++||||||
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEP----- 171 (250)
T PRK11264 97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEP----- 171 (250)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCC-----
Confidence 1222222210 0 000 0011222222222222 2466789999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCccc---ccc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++.......... ... -.+||++||+.+....++|.+++++.|++..
T Consensus 172 ----------------t~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 172 ----------------TSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224 (250)
T ss_pred ----------------CccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 334433322211110 000 1469999999999989999999999998853
No 131
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.83 E-value=5.4e-21 Score=177.73 Aligned_cols=165 Identities=18% Similarity=0.162 Sum_probs=108.0
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------------chhhh----------hH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------------RVAAM----------SV 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------------~i~~~----------~~ 196 (350)
.+++..++++|++++|+|+||||||||+++++|... +.+|+|.+.... .++++ ++
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 101 (269)
T PRK11831 23 FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV 101 (269)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCH
Confidence 455677899999999999999999999999999984 557887663210 01111 12
Q ss_pred HHHHHHHhcc----cc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 197 AKRVAEEFGC----RL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 197 ~~~v~~~~~~----~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
.+++...... .. ...+...+...+... .++.+..||+||+||++||++++.+|++||||||
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP----------- 170 (269)
T PRK11831 102 FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEP----------- 170 (269)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC-----------
Confidence 2222211000 00 001111222222222 2456789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ...+ -.+||++||+.+....++|.+++++.|++..
T Consensus 171 ----------t~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 224 (269)
T PRK11831 171 ----------FVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224 (269)
T ss_pred ----------CccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence 33444333222111 0000 1469999999999999999999999999853
No 132
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=9.2e-21 Score=173.84 Aligned_cols=157 Identities=13% Similarity=0.055 Sum_probs=101.6
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC------Ccc---hhhhhHHHHHHHHhccc--ccchhhhh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ------PRR---VAAMSVAKRVAEEFGCR--LGQEVGYT 215 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~------~~~---i~~~~~~~~v~~~~~~~--~~~~v~~~ 215 (350)
++++|++++|+|+|||||||++++++|... +.+|.|.+.. +.. ....++.+.+....... ........
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 99 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLK-PDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI 99 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHH
Confidence 456899999999999999999999999884 5578775532 111 11223333332211100 00011122
Q ss_pred hhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc--
Q psy9590 216 IRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP-- 292 (350)
Q Consensus 216 ~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~-- 292 (350)
+...+... .++.+..||+||+||++||++|+.+|+++||||| +..+++........
T Consensus 100 l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEP---------------------t~~LD~~~~~~l~~~l 158 (246)
T cd03237 100 AKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEP---------------------SAYLDVEQRLMASKVI 158 (246)
T ss_pred HHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC---------------------cccCCHHHHHHHHHHH
Confidence 22222221 2467789999999999999999999999999999 33444333222111
Q ss_pred -cccc--eeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 293 -NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 293 -~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
..++ -.+||++||+.+....++|.+++++.+..
T Consensus 159 ~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 159 RRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 0110 14699999999999899999999987543
No 133
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.83 E-value=3.9e-21 Score=183.46 Aligned_cols=166 Identities=14% Similarity=0.110 Sum_probs=110.3
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------------chhh------------h
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------------RVAA------------M 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------------~i~~------------~ 194 (350)
.+++..+|.+|++++|+|+|||||||++++++|+.. +.+|+|.+.... .+++ .
T Consensus 37 l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~ 115 (331)
T PRK15079 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRM 115 (331)
T ss_pred EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCC
Confidence 455677899999999999999999999999999984 568888663210 1111 1
Q ss_pred hHHHHHHHHh---c--cc---ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 195 SVAKRVAEEF---G--CR---LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 195 ~~~~~v~~~~---~--~~---~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
++.+++.... . .. ....+...+...+... .++....|||||+||++||+||+.+|++||+|||
T Consensus 116 tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEP------- 188 (331)
T PRK15079 116 TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEP------- 188 (331)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC-------
Confidence 1222222211 0 00 0011122222223321 2466779999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..+++.........+ .+ -.++|+.||+.+....++|.++|++.|++.+.
T Consensus 189 --------------ts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 189 --------------VSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred --------------CccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 4444443332221100 00 14699999999999999999999999998653
No 134
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.8e-21 Score=179.72 Aligned_cols=165 Identities=19% Similarity=0.192 Sum_probs=109.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhh-----------hhHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAA-----------MSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~-----------~~~~ 197 (350)
+.+++..++++|++++|+|+|||||||++++++|+.. +.+|.|.+.... .+++ .++.
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 3556777899999999999999999999999999984 558888663210 0111 1122
Q ss_pred HHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccCh
Q psy9590 198 KRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDP 270 (350)
Q Consensus 198 ~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~ 270 (350)
+++.... +.. ....+...++..+... .+..+..||+||+||++||++++.+|++||||||
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP------------- 167 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA------------- 167 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC-------------
Confidence 2222110 000 0011222233333322 2456779999999999999999999999999999
Q ss_pred hHHHhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 271 TKLSKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 271 l~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ .+ -.+||++||..+.. ..+|.+++++.|++..
T Consensus 168 --------t~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~ 220 (279)
T PRK13650 168 --------TSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVES 220 (279)
T ss_pred --------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEE
Confidence 4444444332221111 01 14799999999987 5799999999999853
No 135
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.83 E-value=2e-21 Score=176.46 Aligned_cols=165 Identities=17% Similarity=0.166 Sum_probs=108.0
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC---CCcEEEEcCC---------cchhhh------------hHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT---ARGKIGCTQP---------RRVAAM------------SVA 197 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~---~~G~i~~~~~---------~~i~~~------------~~~ 197 (350)
+++..++++|++++|+|+|||||||++++++|...+. .+|+|.+... +.++++ +..
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~ 82 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMG 82 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHH
Confidence 3566688999999999999999999999999998541 6888865321 011111 111
Q ss_pred HHHHHH---hcccc---cchhhhhhhcccCC----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 198 KRVAEE---FGCRL---GQEVGYTIRFEDCT----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 198 ~~v~~~---~~~~~---~~~v~~~~~~~~~~----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.+... .+... .+.+...+...+.. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP---------- 152 (230)
T TIGR02770 83 NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP---------- 152 (230)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC----------
Confidence 111110 11000 01122223333332 12467789999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++.......... ..+ -++||++||..+....++|.+++++.|++..
T Consensus 153 -----------t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 206 (230)
T TIGR02770 153 -----------TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206 (230)
T ss_pred -----------ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 333333322211110 000 1469999999999989999999999999853
No 136
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.8e-21 Score=180.68 Aligned_cols=166 Identities=18% Similarity=0.181 Sum_probs=111.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------------cchhh-----------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------------RRVAA----------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------------~~i~~----------- 193 (350)
+.+++..++++|++++|+|+|||||||++++++|+.. +.+|.|.+... +.+.+
T Consensus 22 ~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 4566778899999999999999999999999999884 55787755321 01111
Q ss_pred hhHHHHHHHHh---cccc---cchhhhhhhcccCC-C-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 194 MSVAKRVAEEF---GCRL---GQEVGYTIRFEDCT-S-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 194 ~~~~~~v~~~~---~~~~---~~~v~~~~~~~~~~-~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
.++.+++.... +... ...+...++..+.. . .++.+..||+||+||++||++|+.+|++||||||
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEP-------- 172 (290)
T PRK13634 101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEP-------- 172 (290)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC--------
Confidence 12222222110 1100 01222233334443 2 3467889999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. + -.+||++||+.+....++|.+++++.|++..
T Consensus 173 -------------t~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 173 -------------TAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred -------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 44444433322211000 0 1469999999999999999999999999853
No 137
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.7e-21 Score=181.75 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=110.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------------------------------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------------------------------ 189 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------------------------------ 189 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|.|.+....
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 4566788899999999999999999999999999984 457887663100
Q ss_pred -----chhhh-----------hHHHHHHHHh---ccc---ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhc
Q psy9590 190 -----RVAAM-----------SVAKRVAEEF---GCR---LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLD 245 (350)
Q Consensus 190 -----~i~~~-----------~~~~~v~~~~---~~~---~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~al 245 (350)
.+.++ ++.+.++... +.. ....+...+...+.. ..++.+..||+||+||++||++|
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL 180 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 01111 1112222110 100 011122223333332 13467889999999999999999
Q ss_pred CCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEe
Q psy9590 246 LNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 246 l~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid 321 (350)
+.+|++|||||| +..+++.........+ .+ -.+||++||+.+....++|.+++++
T Consensus 181 ~~~P~lLlLDEP---------------------t~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~ 239 (305)
T PRK13651 181 AMEPDFLVFDEP---------------------TAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFK 239 (305)
T ss_pred HhCCCEEEEeCC---------------------CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEE
Confidence 999999999999 3344433322211100 00 1469999999999999999999999
Q ss_pred CCeeee
Q psy9590 322 PGFVKQ 327 (350)
Q Consensus 322 ~G~~~~ 327 (350)
.|++..
T Consensus 240 ~G~i~~ 245 (305)
T PRK13651 240 DGKIIK 245 (305)
T ss_pred CCEEEE
Confidence 998753
No 138
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=7.7e-21 Score=181.23 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=111.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------------chhhhh----------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------------RVAAMS---------- 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------------~i~~~~---------- 195 (350)
+.+++..+|.+|++++|+|+|||||||++++++++.. +.+|+|.+.... .++++.
T Consensus 30 ~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 108 (327)
T PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR 108 (327)
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence 3566788899999999999999999999999999984 558888664210 111111
Q ss_pred --HHHHHHHHh----ccc---ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 196 --VAKRVAEEF----GCR---LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 196 --~~~~v~~~~----~~~---~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
+...+.... +.. ....+...+...+... .++.+..|||||+||++||+||+.+|++||+|||
T Consensus 109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEP------- 181 (327)
T PRK11308 109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEP------- 181 (327)
T ss_pred cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECC-------
Confidence 111111100 000 0012222233333321 2456779999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..++..........+. + -.+||+.||+++....++|.++|++.|++.+.
T Consensus 182 --------------ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 182 --------------VSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred --------------CccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 44444433322211110 0 14699999999999999999999999998654
No 139
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.9e-21 Score=177.62 Aligned_cols=166 Identities=18% Similarity=0.138 Sum_probs=109.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhh----------hhHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAA----------MSVAK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~----------~~~~~ 198 (350)
+.+++...+.+|++++|+|+|||||||++++++|+.. +.+|+|.+.... .+++ .++.+
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (265)
T PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE 104 (265)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHH
Confidence 3566788899999999999999999999999999874 557887653210 0111 12223
Q ss_pred HHHHHhcc----------cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 199 RVAEEFGC----------RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 199 ~v~~~~~~----------~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
++...... .....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP---------- 174 (265)
T PRK10575 105 LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEP---------- 174 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC----------
Confidence 33211000 00011222222222221 2456778999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++......... ...+ -.+||++||..+....++|.+++++.|++..
T Consensus 175 -----------t~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 175 -----------TSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred -----------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 44444433221111 0000 1469999999999999999999999999853
No 140
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.83 E-value=4.7e-21 Score=162.86 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=105.7
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------C--cchh----------hhhHHHHHHHHhcc-
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------P--RRVA----------AMSVAKRVAEEFGC- 206 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~--~~i~----------~~~~~~~v~~~~~~- 206 (350)
++..|++++|+||+||||||+++.+.|+. .|.+|.|.+.. | |.++ .++++++++-...-
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFE-TPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhcc-CCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 57889999999999999999999999998 45688886642 2 1122 22233333211100
Q ss_pred -c----ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcC
Q psy9590 207 -R----LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQ 280 (350)
Q Consensus 207 -~----~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~ 280 (350)
+ ..+.+.....-.+... .++...+||||||||+++||+|+.+-.+++|||| | -
T Consensus 100 LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEP-------------------F--s 158 (231)
T COG3840 100 LKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEP-------------------F--S 158 (231)
T ss_pred cccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCc-------------------h--h
Confidence 0 0111111111112222 2355678999999999999999999999999999 2 1
Q ss_pred cccceeccCCc---cccc--ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 281 RLEPLYNKYEE---PNAW--RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 281 ~v~~~~~~~~~---~~~~--~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
.+++..+.+.. ...| +-.++++.||-.|+...|++.++++|.|++..
T Consensus 159 ALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~ 210 (231)
T COG3840 159 ALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210 (231)
T ss_pred hcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence 22333322211 1222 22679999999999999999999999999854
No 141
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.83 E-value=5.7e-21 Score=166.80 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=101.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhccc
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFED 220 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~ 220 (350)
.+++..++++|++++|+|+|||||||++++++|.. .+.+|+|.+. ...+... ...+....+.-. +.. .+..
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~-g~~~~~~--~~~~~~~i~~~~-q~~----~~~~ 88 (178)
T cd03247 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLD-GVPVSDL--EKALSSLISVLN-QRP----YLFD 88 (178)
T ss_pred eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEEC-CEEHHHH--HHHHHhhEEEEc-cCC----eeec
Confidence 45567789999999999999999999999999997 4568999874 3333221 111111111000 000 0111
Q ss_pred CCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc---ccce
Q psy9590 221 CTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWRI 297 (350)
Q Consensus 221 ~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~ 297 (350)
..-.+..+..||+||+||++||++++.+|+++||||| +..++....+..... ..+-
T Consensus 89 ~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP---------------------~~~LD~~~~~~l~~~l~~~~~~ 147 (178)
T cd03247 89 TTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEP---------------------TVGLDPITERQLLSLIFEVLKD 147 (178)
T ss_pred ccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECC---------------------cccCCHHHHHHHHHHHHHHcCC
Confidence 1111112668999999999999999999999999999 333333222111100 0001
Q ss_pred eEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
.+||++||..+.. ..+|.+++++.|.+.
T Consensus 148 ~tii~~sh~~~~~-~~~d~~~~l~~g~i~ 175 (178)
T cd03247 148 KTLIWITHHLTGI-EHMDKILFLENGKII 175 (178)
T ss_pred CEEEEEecCHHHH-HhCCEEEEEECCEEE
Confidence 4699999999987 479999999999875
No 142
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.7e-21 Score=178.31 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=108.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-------------chhhhh-----------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-------------RVAAMS----------- 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-------------~i~~~~----------- 195 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .+++++
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 94 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTD 94 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccccc
Confidence 4566788899999999999999999999999999874 558888663210 111111
Q ss_pred HHHHHHHH---hcccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEE---FGCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~---~~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
..+++... .+... ...+...+...+... .++.+..||+||+||++||++|+.+|++||||||
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEP----------- 163 (271)
T PRK13638 95 IDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP----------- 163 (271)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC-----------
Confidence 11111110 00000 011112222222222 2456789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccc---ccc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPN---AWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~---~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++......... ... -.+||++||+.+....++|.+++++.|++..
T Consensus 164 ----------t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~ 216 (271)
T PRK13638 164 ----------TAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT 216 (271)
T ss_pred ----------cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 334443332221110 000 1469999999999989999999999999754
No 143
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6.5e-21 Score=181.72 Aligned_cols=167 Identities=15% Similarity=0.127 Sum_probs=111.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC---CCCcEEEEcCCcc----------------hhhhh-----
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF---TARGKIGCTQPRR----------------VAAMS----- 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~---~~~G~i~~~~~~~----------------i~~~~----- 195 (350)
+.+++..++.+|++++|+|+|||||||++++++|+... +.+|+|.+.. .. ++++.
T Consensus 22 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G-~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNG-QDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECC-EECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 36678889999999999999999999999999998753 2578886632 11 11111
Q ss_pred -------HHHHHHHHh----ccc---ccchhhhhhhcccCCC----ccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 196 -------VAKRVAEEF----GCR---LGQEVGYTIRFEDCTS----SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 196 -------~~~~v~~~~----~~~---~~~~v~~~~~~~~~~~----~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
+...+.... +.. ..+.+...++..+... .+.....|||||+||++||+||+.+|++||+|||
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP 180 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 111111111 000 0111222233333321 1356678999999999999999999999999999
Q ss_pred CccccccccccChhHHHhhhhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 258 HERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 258 her~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..+++......... ..+ -.++|++||+.+....++|.++|++.|++.+.
T Consensus 181 ---------------------ts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 181 ---------------------TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred ---------------------CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 444444433222110 000 14699999999999899999999999998754
No 144
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=6.9e-21 Score=174.69 Aligned_cols=168 Identities=14% Similarity=0.139 Sum_probs=108.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC--CCCCcEEEEcCC-----------cchhh---------hhHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG--FTARGKIGCTQP-----------RRVAA---------MSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~--~~~~G~i~~~~~-----------~~i~~---------~~~~ 197 (350)
..+++...+++|++++|+|+|||||||++++++|+.. .+.+|+|.+... +.+++ .++.
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~ 96 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIY 96 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHH
Confidence 3556778899999999999999999999999999864 245788765311 01111 1222
Q ss_pred HHHHHHh---cc-----cccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 198 KRVAEEF---GC-----RLGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 198 ~~v~~~~---~~-----~~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
+++.... +. .....+...++..+.. ..+.....||+||+||+++|++++.+|+++|||||
T Consensus 97 eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP------- 169 (246)
T PRK14269 97 ENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEP------- 169 (246)
T ss_pred HHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC-------
Confidence 3332110 10 0001122222332331 12356678999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..+++.........+ ..-.+||++||..+....++|.+++++.|++...
T Consensus 170 --------------~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 170 --------------TSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred --------------cccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence 2233322221111100 0014699999999999999999999999998643
No 145
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7.8e-21 Score=175.15 Aligned_cols=167 Identities=18% Similarity=0.223 Sum_probs=109.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC----CCcEEEEcCC-------------cchhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT----ARGKIGCTQP-------------RRVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~----~~G~i~~~~~-------------~~i~~--------- 193 (350)
+.+++..++++|++++|+|+||||||||+++++|+..+. .+|+|.+... +.+++
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (254)
T PRK14273 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL 101 (254)
T ss_pred eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc
Confidence 356778899999999999999999999999999987542 4788765311 01111
Q ss_pred hhHHHHHHHHh---ccc----ccchhhhhhhcccC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 194 MSVAKRVAEEF---GCR----LGQEVGYTIRFEDC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 194 ~~~~~~v~~~~---~~~----~~~~v~~~~~~~~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.++.+++.... +.. ..+.+...+...+. ...++.+..||+||+||++||++++.+|+++|||||
T Consensus 102 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP---- 177 (254)
T PRK14273 102 MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP---- 177 (254)
T ss_pred CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC----
Confidence 12223332211 000 00111122222221 113466789999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+ ..-.+||++||..+....++|.+++++.|++..
T Consensus 178 -----------------t~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 229 (254)
T PRK14273 178 -----------------TSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE 229 (254)
T ss_pred -----------------CcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 3333333222111100 001469999999999999999999999999854
No 146
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.1e-20 Score=174.13 Aligned_cols=167 Identities=19% Similarity=0.226 Sum_probs=108.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC--C--CCCcEEEEcCC-------------cchhhh--------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG--F--TARGKIGCTQP-------------RRVAAM-------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~--~--~~~G~i~~~~~-------------~~i~~~-------- 194 (350)
+.+++..++++|++++|+|+|||||||++++++|+.. + +.+|+|.+... +.++++
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (253)
T PRK14242 21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP 100 (253)
T ss_pred eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc
Confidence 3567788899999999999999999999999999853 1 35788765320 011111
Q ss_pred -hHHHHHHHHh---cccc----cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 195 -SVAKRVAEEF---GCRL----GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 195 -~~~~~v~~~~---~~~~----~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
++.+++.... +... .+.+...+...+.. ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEP---- 176 (253)
T PRK14242 101 KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEP---- 176 (253)
T ss_pred CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC----
Confidence 2223332211 1000 01111222222221 12355778999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++.......... ...-.+||++||+.+....++|.+++++.|.+..
T Consensus 177 -----------------t~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14242 177 -----------------ASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE 228 (253)
T ss_pred -----------------cccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEE
Confidence 333333322211110 0001469999999999999999999999999854
No 147
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.8e-21 Score=181.21 Aligned_cols=168 Identities=11% Similarity=0.093 Sum_probs=110.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC---CCCcEEEEcCC---------------cchhhhh------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF---TARGKIGCTQP---------------RRVAAMS------ 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~---~~~G~i~~~~~---------------~~i~~~~------ 195 (350)
+.+++..+|.+|++++|+|+|||||||++++++|+... +.+|.|.+... +.++++.
T Consensus 22 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~ 101 (330)
T PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSC 101 (330)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchh
Confidence 35667888999999999999999999999999998752 35788766321 0121111
Q ss_pred ------HHHHHHHHh-cc-----------cccchhhhhhhcccCCC----ccccccccChhHHHHHHHHhhcCCCCcEEE
Q psy9590 196 ------VAKRVAEEF-GC-----------RLGQEVGYTIRFEDCTS----SETLIKYMTDGMLLRECLVDLDLNNYSVIM 253 (350)
Q Consensus 196 ------~~~~v~~~~-~~-----------~~~~~v~~~~~~~~~~~----~~~~i~~lS~G~~qr~~ia~all~~~~viI 253 (350)
+.+.+.... +. .....+...+...+... .+.....|||||+||++||+||+.+|++||
T Consensus 102 l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli 181 (330)
T PRK15093 102 LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLI 181 (330)
T ss_pred cCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 112221100 00 00011222233333322 135667999999999999999999999999
Q ss_pred EcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 254 LDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 254 lDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+||| +..+++........-+. + -.+||++||+.+....++|.++|++.|++.+.
T Consensus 182 lDEP---------------------ts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 182 ADEP---------------------TNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred EeCC---------------------CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999 44444433222211000 0 14699999999999999999999999998653
No 148
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.9e-21 Score=175.32 Aligned_cols=165 Identities=18% Similarity=0.218 Sum_probs=107.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------------chhh----------hhHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------------RVAA----------MSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------------~i~~----------~~~~ 197 (350)
+.+++..++++|++++|+|+|||||||+++++.|... +.+|+|.+.... .+.+ .++.
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (237)
T PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE 98 (237)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHH
Confidence 4566778899999999999999999999999999874 558887653210 0111 1222
Q ss_pred HHHHHHhc-cc---ccchhhhhhhcc-cCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 198 KRVAEEFG-CR---LGQEVGYTIRFE-DCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 198 ~~v~~~~~-~~---~~~~v~~~~~~~-~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
+++..... .. ....+...+... ... ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEP-------------- 164 (237)
T PRK11614 99 ENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP-------------- 164 (237)
T ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCc--------------
Confidence 33222110 00 000111111111 111 12356778999999999999999999999999999
Q ss_pred HHHhhhhcCcccceeccCCccc---cc-ceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 272 KLSKFKKNQRLEPLYNKYEEPN---AW-RISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~~~---~~-~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..++.......... .. +-++||++||..+....++|.+++++.|++.
T Consensus 165 -------t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 165 -------SLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV 216 (237)
T ss_pred -------cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE
Confidence 344443332211110 00 0156999999999999999999999999875
No 149
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.7e-21 Score=179.12 Aligned_cols=166 Identities=15% Similarity=0.170 Sum_probs=111.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc---------------chhhh----------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR---------------RVAAM---------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~---------------~i~~~---------- 194 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .++++
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE 100 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence 4667788899999999999999999999999999884 557887663210 11111
Q ss_pred -hHHHHHHHHh---ccc---ccchhhhhhhcccCC-C-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 195 -SVAKRVAEEF---GCR---LGQEVGYTIRFEDCT-S-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 195 -~~~~~v~~~~---~~~---~~~~v~~~~~~~~~~-~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
++.+++.... +.. ....+...+...+.. . .++.+..||+||+||++||++|+.+|+++|||||
T Consensus 101 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEP-------- 172 (286)
T PRK13646 101 DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEP-------- 172 (286)
T ss_pred hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECC--------
Confidence 1112222110 000 001122223333332 2 2467889999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCccccc-----ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNAW-----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. .-.+||++||+.+....++|.+++++.|++..
T Consensus 173 -------------t~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 173 -------------TAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred -------------cccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 44444333222211000 01579999999999889999999999999863
No 150
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.6e-21 Score=173.79 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=106.9
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cchhh----------hhHHHHHHHH
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRVAA----------MSVAKRVAEE 203 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i~~----------~~~~~~v~~~ 203 (350)
++..++.+|++++|+|+|||||||++++++|... +.+|+|.+... +.+++ .++.+++...
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 5777899999999999999999999999999874 55787755311 01111 2223333211
Q ss_pred hcc--c----ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhh
Q psy9590 204 FGC--R----LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKF 276 (350)
Q Consensus 204 ~~~--~----~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~ 276 (350)
+.. . ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP------------------- 156 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEP------------------- 156 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC-------------------
Confidence 100 0 0011222223332221 3466779999999999999999999999999999
Q ss_pred hhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 277 KKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 277 ~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++...+.... ...+ -.+||++||+.+....++|.+++++.|++.
T Consensus 157 --~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 209 (232)
T PRK10771 157 --FSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA 209 (232)
T ss_pred --cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 33333332211111 0000 136999999999988999999999999985
No 151
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=5.8e-21 Score=165.70 Aligned_cols=152 Identities=16% Similarity=0.216 Sum_probs=98.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFE 219 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~ 219 (350)
..+++..++++|++++|+|+|||||||++++++|... +.+|++.+.. ..+...+... .....+.-..+. . +.
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g-~~~~~~~~~~-~~~~i~~~~~~~--~---~~ 88 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDG-VDLRDLDLES-LRKNIAYVPQDP--F---LF 88 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECC-EEhhhcCHHH-HHhhEEEEcCCc--h---hc
Confidence 3556677899999999999999999999999999984 5589988743 2332211111 111111100000 0 01
Q ss_pred cCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc
Q psy9590 220 DCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR 296 (350)
Q Consensus 220 ~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~ 296 (350)
.. .....+ ||+||+||++||++++.+|+++||||| +..++......... ...+
T Consensus 89 ~~-t~~e~l--LS~G~~~rl~la~al~~~p~llllDEP---------------------~~gLD~~~~~~l~~~l~~~~~ 144 (171)
T cd03228 89 SG-TIRENI--LSGGQRQRIAIARALLRDPPILILDEA---------------------TSALDPETEALILEALRALAK 144 (171)
T ss_pred cc-hHHHHh--hCHHHHHHHHHHHHHhcCCCEEEEECC---------------------CcCCCHHHHHHHHHHHHHhcC
Confidence 10 000011 999999999999999999999999999 33333322211110 0000
Q ss_pred eeEEEEEecccccccccCCEEEEEeCCe
Q psy9590 297 ISRVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 297 ~~~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
-++||++||..+.... +|.+++++.|+
T Consensus 145 ~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 145 GKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 1469999999999866 99999999884
No 152
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.1e-21 Score=178.36 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=107.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------------chhh-----------hhH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------------RVAA-----------MSV 196 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------------~i~~-----------~~~ 196 (350)
+.+++..++++|++++|+|+|||||||++++++|+.. +.+|+|.+.... .+++ .++
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence 3566778899999999999999999999999999874 558888663210 0111 111
Q ss_pred HHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 197 AKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 197 ~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.+++.... +.. ....+...+...+... .++.+..||+||+||++||+|++.+|+++|||||
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP------------ 163 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEV------------ 163 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC------------
Confidence 12221110 000 0011222222222222 2466789999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. .-.+||++||+.+.. ..+|.+++++.|.+..
T Consensus 164 ---------t~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v~~l~~G~i~~ 215 (274)
T PRK13644 164 ---------TSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIVL 215 (274)
T ss_pred ---------cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEEEEEECCEEEE
Confidence 33443332211111000 014699999999987 6799999999999853
No 153
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=8.5e-21 Score=170.43 Aligned_cols=161 Identities=14% Similarity=0.130 Sum_probs=106.3
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc---------------chhh----------hhHH
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR---------------RVAA----------MSVA 197 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~---------------~i~~----------~~~~ 197 (350)
++..++++ ++++|+|+|||||||++++++|... +.+|+|.+.... .+++ .+..
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVR 93 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHH
Confidence 67778999 9999999999999999999999974 457877553210 1111 1222
Q ss_pred HHHHHHhcc----cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 198 KRVAEEFGC----RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 198 ~~v~~~~~~----~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+++...... .....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP--------------- 158 (214)
T cd03297 94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP--------------- 158 (214)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC---------------
Confidence 322211110 00011222222222222 2466789999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..++....+.....+ .+ -.+||++||..+....++|.+++++.|++.
T Consensus 159 ------t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 159 ------FSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211 (214)
T ss_pred ------cccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 4444443322221100 00 146999999999999999999999999874
No 154
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3.6e-21 Score=168.09 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=100.5
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhH-HHHHHHHhcccccchhhhhhh--
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSV-AKRVAEEFGCRLGQEVGYTIR-- 217 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~-~~~v~~~~~~~~~~~v~~~~~-- 217 (350)
.+++..++++|++++|+|+|||||||+++.++|.. .+.+|+|.+.. ..+...+. ...... .+++...
T Consensus 16 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g-~~~~~~~~~~~~~~~--------~i~~~~q~~ 85 (178)
T cd03229 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDG-EDLTDLEDELPPLRR--------RIGMVFQDF 85 (178)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECC-EEccccchhHHHHhh--------cEEEEecCC
Confidence 45567789999999999999999999999999987 45689998743 22221110 011111 1111110
Q ss_pred -cccCCCccccccc-cChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---
Q psy9590 218 -FEDCTSSETLIKY-MTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP--- 292 (350)
Q Consensus 218 -~~~~~~~~~~i~~-lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~--- 292 (350)
+.........+.. ||+||+||++||++++.+|+++||||| ...+++........
T Consensus 86 ~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP---------------------~~~LD~~~~~~l~~~l~ 144 (178)
T cd03229 86 ALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEP---------------------TSALDPITRREVRALLK 144 (178)
T ss_pred ccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCC---------------------cccCCHHHHHHHHHHHH
Confidence 0000011111112 999999999999999999999999999 34444333222111
Q ss_pred cccc--eeEEEEEecccccccccCCEEEEEeCCe
Q psy9590 293 NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 293 ~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
..++ -+++|++||+.+....++|.+++++.|.
T Consensus 145 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 145 SLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 0111 1469999999999988999999999884
No 155
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.83 E-value=7.9e-21 Score=171.71 Aligned_cols=164 Identities=16% Similarity=0.215 Sum_probs=109.6
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-------cch----------hhhhHHHHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-------RRV----------AAMSVAKRVAEE 203 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-------~~i----------~~~~~~~~v~~~ 203 (350)
.+++..++++|++++|+|+||||||||+++++|... +.+|.|.+... +.+ ...+..+++...
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~ 94 (223)
T TIGR03740 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-PTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVH 94 (223)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHH
Confidence 456677889999999999999999999999999874 55787754211 011 112333333221
Q ss_pred ---hcccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhc
Q psy9590 204 ---FGCRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKN 279 (350)
Q Consensus 204 ---~~~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~ 279 (350)
.+. ....+...+...+... .+..+..||+||+||+++|++++.+|++++|||| +
T Consensus 95 ~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP---------------------~ 152 (223)
T TIGR03740 95 TTLLGL-PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEP---------------------T 152 (223)
T ss_pred HHHcCC-CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC---------------------c
Confidence 111 1112222233333322 2456778999999999999999999999999999 3
Q ss_pred CcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 280 QRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 280 ~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
..++....+.....+ ++ -++||++||..+....++|.+++++.|.+..
T Consensus 153 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 153 NGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY 204 (223)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Confidence 344433322211100 00 1469999999999999999999999999853
No 156
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.83 E-value=7.5e-21 Score=172.21 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=107.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------------cchhh------------h
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------------RRVAA------------M 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------------~~i~~------------~ 194 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... +.+++ .
T Consensus 21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 99 (228)
T cd03257 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM 99 (228)
T ss_pred ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcC
Confidence 466788899999999999999999999999999874 55787765321 01111 1
Q ss_pred hHHHHHHHH---hccccc-c---hh-hhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 195 SVAKRVAEE---FGCRLG-Q---EV-GYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 195 ~~~~~v~~~---~~~~~~-~---~v-~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
++.+++... .+.... . .. ...+...+.. ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 100 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP------- 172 (228)
T cd03257 100 TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEP------- 172 (228)
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCC-------
Confidence 222222211 110000 0 00 1122222222 12466789999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++...+.....+ ++ -.+||++||..+....++|.+++++.|++.
T Consensus 173 --------------t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 173 --------------TSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred --------------CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 3334333322211111 11 146999999999988899999999999874
No 157
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2e-21 Score=171.70 Aligned_cols=167 Identities=16% Similarity=0.173 Sum_probs=113.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------------------------chhhhh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------------------------RVAAMS 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------------------------~i~~~~ 195 (350)
..++|...|++||+++|+|++|||||||++++.++. .++.|.|.+.... -+.-.+
T Consensus 19 aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~s 97 (258)
T COG3638 19 ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLS 97 (258)
T ss_pred eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc-CCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccH
Confidence 456788899999999999999999999999999977 4558888663211 111111
Q ss_pred HHHHHH-----------HHhcccccc---hhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 196 VAKRVA-----------EEFGCRLGQ---EVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 196 ~~~~v~-----------~~~~~~~~~---~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
+.+++. ..++....+ ..-..+...+.... ..+..+|||||+||++|||||+++|++|+.|||
T Consensus 98 v~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEP--- 174 (258)
T COG3638 98 VLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEP--- 174 (258)
T ss_pred HHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCc---
Confidence 112211 111111111 11111122222222 256679999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcccccce-----eEEEEEecccccccccCCEEEEEeCCeeeeEeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI-----SRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYN 331 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~ 331 (350)
...+++...+.....+.++ .+||+.-|..+.+...|++++-++.|++ .||
T Consensus 175 ------------------vasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~i---vfD 229 (258)
T COG3638 175 ------------------VASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI---VFD 229 (258)
T ss_pred ------------------ccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcE---EEe
Confidence 5566665554443322111 5799999999999999999999999987 565
No 158
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.83 E-value=7.8e-21 Score=173.34 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=110.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchhh-----------hhHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVAA-----------MSVAK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~~-----------~~~~~ 198 (350)
+.+++...+++|++++|+|+||||||||+++++|... +.+|+|.+... +.+++ .+..+
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e 114 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID 114 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHH
Confidence 4567788999999999999999999999999999874 45787755210 01111 12222
Q ss_pred HHHHHh---cccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 199 RVAEEF---GCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 199 ~v~~~~---~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
.+.... +... ...+...++..+... .++.+..||+||+||+.||++++.+|+++|||||
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP-------------- 180 (236)
T cd03267 115 SFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP-------------- 180 (236)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC--------------
Confidence 222111 1100 111222233333322 2467789999999999999999999999999999
Q ss_pred HHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 272 KLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++...+.....+. + -++||++||..+....++|.+++++.|.+.
T Consensus 181 -------t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 181 -------TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred -------CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 44444443322211000 0 146999999999988999999999999874
No 159
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.83 E-value=9.1e-21 Score=171.83 Aligned_cols=163 Identities=14% Similarity=0.115 Sum_probs=105.1
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------------cchhh----------hh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------------RRVAA----------MS 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------------~~i~~----------~~ 195 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|.|.+... +.+++ .+
T Consensus 26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~t 104 (228)
T PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLN 104 (228)
T ss_pred EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcC
Confidence 355677889999999999999999999999999874 55888765321 01111 11
Q ss_pred HHHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.+++.... +.. ..+.+...+...+... .++.+..||+||+||+.||++|+.+|+++|||||
T Consensus 105 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEP----------- 173 (228)
T PRK10584 105 ALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEP----------- 173 (228)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC-----------
Confidence 222222110 000 0011222222223222 2356778999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccccc----c-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNAW----R-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~~----~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+. + -.+||++||+.+.. ..+|.+++++.|++.
T Consensus 174 ----------t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~-~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 174 ----------TGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA-ARCDRRLRLVNGQLQ 225 (228)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEE
Confidence 33444332222111110 0 14699999999976 559999999999874
No 160
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1e-20 Score=174.19 Aligned_cols=167 Identities=14% Similarity=0.210 Sum_probs=108.9
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC----CCcEEEEcCC-------------cchhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT----ARGKIGCTQP-------------RRVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~----~~G~i~~~~~-------------~~i~~--------- 193 (350)
+.+++..++.+|++++|+|+|||||||++++++|...+. .+|+|.+... +.+++
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFP 98 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCC
Confidence 456778899999999999999999999999999997542 4788765310 01111
Q ss_pred -hhHHHHHHHHh---cc--c---ccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 194 -MSVAKRVAEEF---GC--R---LGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 194 -~~~~~~v~~~~---~~--~---~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
.++.+++.... +. . ....+...+...+.. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP-- 176 (253)
T PRK14267 99 HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP-- 176 (253)
T ss_pred CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC--
Confidence 12223332211 10 0 001122222222211 12456789999999999999999999999999999
Q ss_pred cccccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 260 RTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 260 r~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+ .+-++||++||..+....++|.+++++.|++..
T Consensus 177 -------------------~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 177 -------------------TANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred -------------------CccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 3333332221111100 001469999999999999999999999999853
No 161
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.1e-21 Score=173.64 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=107.7
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------------chhh----------hhHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------------RVAA----------MSVAK 198 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------------~i~~----------~~~~~ 198 (350)
.+++..++++|++++|+|+|||||||+++++.|... +.+|+|.+.... .+.+ .++.+
T Consensus 19 l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (241)
T PRK10895 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYD 97 (241)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHH
Confidence 456778899999999999999999999999999874 558887663210 0111 12223
Q ss_pred HHHHHhccc-------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccCh
Q psy9590 199 RVAEEFGCR-------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDP 270 (350)
Q Consensus 199 ~v~~~~~~~-------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~ 270 (350)
++....... ....+...+...+... .+..+..||+||+||++||++++.+|+++|||||
T Consensus 98 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP------------- 164 (241)
T PRK10895 98 NLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEP------------- 164 (241)
T ss_pred HHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC-------------
Confidence 222111000 0001111222222221 2456779999999999999999999999999999
Q ss_pred hHHHhhhhcCcccceeccCCcc---cccc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 271 TKLSKFKKNQRLEPLYNKYEEP---NAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 271 l~~~~~~~~~~v~~~~~~~~~~---~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ .... -.+||++||..+....++|.+++++.|++..
T Consensus 165 --------t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 217 (241)
T PRK10895 165 --------FAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA 217 (241)
T ss_pred --------cccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe
Confidence 33333322211110 0000 1469999999999999999999999999854
No 162
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6.3e-21 Score=178.29 Aligned_cols=165 Identities=18% Similarity=0.207 Sum_probs=109.0
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------------cchhhh-----------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------------RRVAAM----------- 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------------~~i~~~----------- 194 (350)
.+++..++++|++++|+|+||||||||+++++|... +.+|+|.+... +.++++
T Consensus 23 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 101 (280)
T PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEE 101 (280)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccc
Confidence 456777899999999999999999999999999874 55788765321 011111
Q ss_pred hHHHHHHHHh---cccc---cchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 195 SVAKRVAEEF---GCRL---GQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 195 ~~~~~v~~~~---~~~~---~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
++.+++.... +... ...+...+...+... .++.+..||+||+||++||++++.+|++||||||
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP--------- 172 (280)
T PRK13649 102 TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEP--------- 172 (280)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC---------
Confidence 1112221110 0000 011122222333321 2467789999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ .+ -.+||++||+.+....++|.+++++.|++..
T Consensus 173 ------------t~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 225 (280)
T PRK13649 173 ------------TAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL 225 (280)
T ss_pred ------------cccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE
Confidence 3444443322211100 00 1469999999999989999999999998853
No 163
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=6e-21 Score=165.91 Aligned_cols=152 Identities=19% Similarity=0.243 Sum_probs=100.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFE 219 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~ 219 (350)
+.+++..++.+|++++|+|+|||||||+++.++|... +.+|+|.+.. ..+...+ ..... .+++.....
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g-~~~~~~~--~~~~~--------~i~~~~q~~ 82 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLG-KDIKKEP--EEVKR--------RIGYLPEEP 82 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECC-EEcccch--Hhhhc--------cEEEEecCC
Confidence 3556777899999999999999999999999999874 5589998743 2222111 11110 111111000
Q ss_pred cCCCcccccc--ccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc--
Q psy9590 220 DCTSSETLIK--YMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW-- 295 (350)
Q Consensus 220 ~~~~~~~~i~--~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~-- 295 (350)
......+... .||+||+||++||++++.+|+++++||| +..++..........+.
T Consensus 83 ~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEP---------------------t~~LD~~~~~~l~~~l~~~ 141 (173)
T cd03230 83 SLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEP---------------------TSGLDPESRREFWELLREL 141 (173)
T ss_pred ccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCC---------------------ccCCCHHHHHHHHHHHHHH
Confidence 0000001111 1999999999999999999999999999 33443332221111000
Q ss_pred --ceeEEEEEecccccccccCCEEEEEeCCe
Q psy9590 296 --RISRVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 296 --~~~~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
+-.++|++||..+....++|.+++++.|.
T Consensus 142 ~~~g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 142 KKEGKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred HHCCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 01469999999998888999999999985
No 164
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=9.9e-21 Score=173.19 Aligned_cols=166 Identities=13% Similarity=0.170 Sum_probs=108.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------------chhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------------RVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------------~i~~--------- 193 (350)
+.+++...+++|++++|+|+|||||||++++++|... +.+|+|.+.... .+++
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 3456777899999999999999999999999999874 558888663210 0111
Q ss_pred -hhHHHHHHHH----hccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 194 -MSVAKRVAEE----FGCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 194 -~~~~~~v~~~----~~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
.++.+++... .+.. ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 96 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP------- 168 (242)
T PRK11124 96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEP------- 168 (242)
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC-------
Confidence 1122222210 0000 0011222222223322 2456789999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. .-.+||++||..+....++|.+++++.|++..
T Consensus 169 --------------t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~ 221 (242)
T PRK11124 169 --------------TAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221 (242)
T ss_pred --------------CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 33333332221111000 01469999999999989999999999999853
No 165
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.9e-21 Score=175.80 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=108.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCCc-------------chhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQPR-------------RVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~~-------------~i~~--------- 193 (350)
+.+++..++++|++++|+|+||||||||+++++|...+ +.+|+|.+.... .+++
T Consensus 34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 113 (267)
T PRK14235 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP 113 (267)
T ss_pred EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC
Confidence 34567778999999999999999999999999998753 367887653210 0111
Q ss_pred hhHHHHHHHHh---cc--c---ccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 194 MSVAKRVAEEF---GC--R---LGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 194 ~~~~~~v~~~~---~~--~---~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
.++.+++.... +. . ....+...+...+.. ..++.+..||+||+||++||++++.+|++||||||
T Consensus 114 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP--- 190 (267)
T PRK14235 114 KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP--- 190 (267)
T ss_pred CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC---
Confidence 12223332111 10 0 001122222222221 12356778999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ .+-.+||++||..+....++|.+++++.|.+..
T Consensus 191 ------------------t~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 191 ------------------CSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred ------------------CcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 3333333222111100 001469999999999999999999999998853
No 166
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.1e-20 Score=172.00 Aligned_cols=163 Identities=12% Similarity=0.141 Sum_probs=106.3
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------------cchhh----------hh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------------RRVAA----------MS 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------------~~i~~----------~~ 195 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... +.+++ .+
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 103 (233)
T PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFT 103 (233)
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCC
Confidence 455677899999999999999999999999999874 55888866321 01111 12
Q ss_pred HHHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.+++.... +.. ..+.+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 104 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP----------- 172 (233)
T PRK11629 104 ALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEP----------- 172 (233)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC-----------
Confidence 223332210 100 0011222233333322 2456789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcc---ccc--ceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEP---NAW--RISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~---~~~--~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++........ ... +-.+||++||+.+....+ +.+++++.|++.
T Consensus 173 ----------t~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~ 224 (233)
T PRK11629 173 ----------TGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLT 224 (233)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEE
Confidence 33443333222111 000 014699999999998776 588999999874
No 167
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=6.7e-21 Score=177.85 Aligned_cols=166 Identities=17% Similarity=0.178 Sum_probs=110.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhh-----------hhHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAA-----------MSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~-----------~~~~ 197 (350)
+.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+.... .+++ .++.
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE 97 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence 3456777899999999999999999999999999874 568888653210 0111 1222
Q ss_pred HHHHHHh---cccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccCh
Q psy9590 198 KRVAEEF---GCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDP 270 (350)
Q Consensus 198 ~~v~~~~---~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~ 270 (350)
+++.... +... ...+...+...+... .++.+..||+||+||++||+||+.+|++||||||
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEP------------- 164 (277)
T PRK13652 98 QDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP------------- 164 (277)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC-------------
Confidence 2222110 0000 011222233333322 2467789999999999999999999999999999
Q ss_pred hHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 271 TKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 271 l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ...+ -.+||++||..+....++|.+++++.|++..
T Consensus 165 --------t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~ 218 (277)
T PRK13652 165 --------TAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA 218 (277)
T ss_pred --------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence 44444433222111 0000 1469999999999989999999999999853
No 168
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9e-21 Score=175.88 Aligned_cols=165 Identities=14% Similarity=0.141 Sum_probs=109.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch------------hh----------hhHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV------------AA----------MSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i------------~~----------~~~~ 197 (350)
+.+++..++.+|++++|+|+|||||||++++++|... +.+|.|.+.. ..+ ++ .++.
T Consensus 22 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g-~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 99 (265)
T PRK10253 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-PAHGHVWLDG-EHIQHYASKEVARRIGLLAQNATTPGDITVQ 99 (265)
T ss_pred EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCcEEEECC-EEhhhCCHHHHhhheEEeeccCcCCCCCcHH
Confidence 4567888999999999999999999999999999874 5588886632 111 11 1122
Q ss_pred HHHHHHh-cc---------cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 198 KRVAEEF-GC---------RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 198 ~~v~~~~-~~---------~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
+++.... .. .....+...+...+... .++.+..||+||+||++||+|++.+|+++|||||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP--------- 170 (265)
T PRK10253 100 ELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEP--------- 170 (265)
T ss_pred HHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCc---------
Confidence 2222100 00 00011222222222221 2467789999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ .+ -.+||++||..+....++|.+++++.|++..
T Consensus 171 ------------t~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 171 ------------TTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA 224 (265)
T ss_pred ------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 3344433222111100 00 1369999999999999999999999999753
No 169
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.5e-20 Score=172.73 Aligned_cols=166 Identities=22% Similarity=0.228 Sum_probs=107.4
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCC-------------cchhh---------h
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQP-------------RRVAA---------M 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~-------------~~i~~---------~ 194 (350)
.+++..++++|++++|+|+|||||||++++++|...+ +.+|+|.+... +.+++ .
T Consensus 19 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 98 (250)
T PRK14262 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPM 98 (250)
T ss_pred EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcc
Confidence 5667788999999999999999999999999998743 25787765320 00111 1
Q ss_pred hHHHHHHHHh---cccc----cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 195 SVAKRVAEEF---GCRL----GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 195 ~~~~~v~~~~---~~~~----~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
++.+++.... +... .+.+...+...+.. ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP----- 173 (250)
T PRK14262 99 SIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEP----- 173 (250)
T ss_pred cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCC-----
Confidence 2222222111 0000 01111122222221 12456789999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+ .+-++||++||+.+....++|.+++++.|++..
T Consensus 174 ----------------~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 174 ----------------TSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225 (250)
T ss_pred ----------------ccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 3333333222111100 001469999999999989999999999999853
No 170
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=8.3e-21 Score=180.48 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=109.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc---------------------------chh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR---------------------------RVA 192 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~---------------------------~i~ 192 (350)
+.+++...+++|++++|+|+||||||||+++++|+.. +.+|+|.+.... .++
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 119 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS 119 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence 3556777899999999999999999999999999984 558888663200 011
Q ss_pred hh-----------hHHHHHHHHh---ccc---ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEE
Q psy9590 193 AM-----------SVAKRVAEEF---GCR---LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIM 253 (350)
Q Consensus 193 ~~-----------~~~~~v~~~~---~~~---~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viI 253 (350)
++ ++.+++.... +.. ....+...+...+.. ..++.+..|||||+||++||++|+.+|++||
T Consensus 120 ~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLL 199 (320)
T PRK13631 120 MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI 199 (320)
T ss_pred EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 11 1112121100 000 001122222233332 1346677999999999999999999999999
Q ss_pred EcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 254 LDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 254 lDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
|||| +..+++.........+. +-++||++||..+....++|.++|++.|++..
T Consensus 200 LDEP---------------------tsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 200 FDEP---------------------TAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred EECC---------------------ccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999 44444433322211110 11479999999999889999999999999864
No 171
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-20 Score=173.63 Aligned_cols=167 Identities=18% Similarity=0.201 Sum_probs=108.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCCc-------------chhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQPR-------------RVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~~-------------~i~~--------- 193 (350)
+.+++..++.+|++++|+|+|||||||++++++|.... +.+|+|.+.... .+++
T Consensus 19 ~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14251 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP 98 (251)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC
Confidence 35567778999999999999999999999999998741 357877553210 0111
Q ss_pred hhHHHHHHHHh---cccc----cchhhhhhhcccC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 194 MSVAKRVAEEF---GCRL----GQEVGYTIRFEDC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 194 ~~~~~~v~~~~---~~~~----~~~v~~~~~~~~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.++.+++.... +... ...+...+...+. ...+..+..||+||+||++||++++.+|+++|||||
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP---- 174 (251)
T PRK14251 99 FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEP---- 174 (251)
T ss_pred CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCC----
Confidence 12233332111 1000 0111222222222 112456789999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
...+++.........+ .+-.+||++||..+....++|.+++++.|++.+
T Consensus 175 -----------------~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 175 -----------------TSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred -----------------CccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 3333332221111100 011469999999999999999999999999864
No 172
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.82 E-value=1.1e-20 Score=172.36 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=103.0
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhhh---------hHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAAM---------SVAKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~~---------~~~~~v 200 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+.... .+.++ ++.+++
T Consensus 18 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl 96 (237)
T cd03252 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI 96 (237)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHh
Confidence 456677889999999999999999999999999984 558888663210 11111 111222
Q ss_pred HHHhcccccchhhhhhh------cc-----cCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 201 AEEFGCRLGQEVGYTIR------FE-----DCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 201 ~~~~~~~~~~~v~~~~~------~~-----~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
...........+..... +. ... ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP----------- 165 (237)
T cd03252 97 ALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEA----------- 165 (237)
T ss_pred hccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC-----------
Confidence 11000000000100000 00 000 11345679999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+ ..-.+||++||+.+.. ..+|.+++++.|++..
T Consensus 166 ----------~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-~~~d~v~~l~~G~i~~ 216 (237)
T cd03252 166 ----------TSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV-KNADRIIVMEKGRIVE 216 (237)
T ss_pred ----------cccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEE
Confidence 3333333222111100 0014699999999987 4699999999998853
No 173
>KOG0058|consensus
Probab=99.82 E-value=1.2e-20 Score=189.23 Aligned_cols=168 Identities=19% Similarity=0.183 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC--------------------CcchhhhhHH
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ--------------------PRRVAAMSVA 197 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~--------------------~~~i~~~~~~ 197 (350)
..+.+++..+|++|++++|+||+|+||||++..+..++. |++|+|.... ...+...++.
T Consensus 481 ~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~-PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 481 VPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD-PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred chhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 456788999999999999999999999999999999984 5699997642 1112222333
Q ss_pred HHHHHHhcccccchhhh---------hh-hcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 198 KRVAEEFGCRLGQEVGY---------TI-RFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 198 ~~v~~~~~~~~~~~v~~---------~~-~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
+++++.......+.+.. .+ .+.+.. .-..+-.+||||||||++|||||+.+|.+|||||+
T Consensus 560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEA-------- 631 (716)
T KOG0058|consen 560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEA-------- 631 (716)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEech--------
Confidence 44443222111111110 01 111111 11133448999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCccccee---ccCCcccccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLY---NKYEEPNAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~---~~~~~~~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|.-. .++......+-|+|++-.|-+.|. .-+|.++|||.|++.|.
T Consensus 632 -------------TSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV-~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 632 -------------TSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTV-RHADQIVVIDKGRVVEM 683 (716)
T ss_pred -------------hhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHh-hhccEEEEEcCCeEEec
Confidence 22222211 111111111127899999999987 55899999999999887
No 174
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.82 E-value=1.5e-20 Score=174.60 Aligned_cols=166 Identities=17% Similarity=0.115 Sum_probs=109.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhhhH------------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAMSV------------ 196 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~~~------------ 196 (350)
+.+++...+++|++++|+|+|||||||++++++|... +.+|+|.+... +.+++++.
T Consensus 28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 3556778899999999999999999999999999984 55888866321 01111111
Q ss_pred HHHHHHHh--c--cc---ccchhhhhhhcccCC-C-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 197 AKRVAEEF--G--CR---LGQEVGYTIRFEDCT-S-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 197 ~~~v~~~~--~--~~---~~~~v~~~~~~~~~~-~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
...+.... . .. ..+.+...+...+.. . .+..+..||+||+||++||++++.+|+++|||||
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP---------- 176 (267)
T PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEA---------- 176 (267)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCC----------
Confidence 11111100 0 00 001222233333332 1 2356789999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. + -.+||++||..+....++|.+++++.|.+..
T Consensus 177 -----------t~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 177 -----------LASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230 (267)
T ss_pred -----------cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 33444333222111000 0 1469999999999999999999999999854
No 175
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.6e-20 Score=170.79 Aligned_cols=166 Identities=18% Similarity=0.214 Sum_probs=110.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cchhh----------hhHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRVAA----------MSVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i~~----------~~~~~~v 200 (350)
..+++..++++|++++|+|+||||||||+++++|... +..|.|.+... +.+++ .++.+++
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl 93 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENI 93 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHH
Confidence 4566778899999999999999999999999999984 45787755210 01111 1222222
Q ss_pred HHHhc---cc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHH
Q psy9590 201 AEEFG---CR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKL 273 (350)
Q Consensus 201 ~~~~~---~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~ 273 (350)
..... .. ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP---------------- 157 (232)
T cd03300 94 AFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP---------------- 157 (232)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC----------------
Confidence 21110 00 0112222233333322 3467789999999999999999999999999999
Q ss_pred HhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 274 SKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
...++....+.....+. + -++||++||..++...++|.+++++.|.+.+
T Consensus 158 -----~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~ 211 (232)
T cd03300 158 -----LGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ 211 (232)
T ss_pred -----cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 33444333222211000 0 1479999999999889999999999998853
No 176
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.82 E-value=1.2e-20 Score=167.96 Aligned_cols=165 Identities=14% Similarity=0.100 Sum_probs=104.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc-CCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhh-hhh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEA-GFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGY-TIR 217 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~-~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~-~~~ 217 (350)
+.+++...+.+|++++|+|+|||||||+++.++|.. ..+.+|+|.+.. ..+.......+.....+.-......+ ...
T Consensus 15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g-~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (200)
T cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG-EDITDLPPEERARLGIFLAFQYPPEIPGVK 93 (200)
T ss_pred eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECC-EECCcCCHHHHhhCcEEEeecChhhccCcc
Confidence 355678899999999999999999999999999984 246689998742 22222211111100000000000000 000
Q ss_pred cccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc--
Q psy9590 218 FEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW-- 295 (350)
Q Consensus 218 ~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~-- 295 (350)
..+.. ......||+||+||+++|++++.+|+++||||| +..++..........+.
T Consensus 94 ~~~~l--~~~~~~LS~G~~qrv~laral~~~p~illlDEP---------------------t~~LD~~~~~~l~~~L~~~ 150 (200)
T cd03217 94 NADFL--RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEP---------------------DSGLDIDALRLVAEVINKL 150 (200)
T ss_pred HHHHH--hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCC---------------------CccCCHHHHHHHHHHHHHH
Confidence 00000 112247999999999999999999999999999 33333332221111000
Q ss_pred -c-eeEEEEEecccccccc-cCCEEEEEeCCeeeeE
Q psy9590 296 -R-ISRVVIATNIAETSLT-IDGIFYVVDPGFVKQK 328 (350)
Q Consensus 296 -~-~~~vi~sT~iae~s~t-i~d~~~vid~G~~~~~ 328 (350)
+ -++||++||..+.... ++|.+++++.|.+.+.
T Consensus 151 ~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 151 REEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred HHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence 0 1469999999998776 7999999999988644
No 177
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.5e-20 Score=173.83 Aligned_cols=167 Identities=19% Similarity=0.180 Sum_probs=108.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCC-------------cchhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQP-------------RRVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~-------------~~i~~--------- 193 (350)
+.+++..++++|++++|+|+||||||||+++++|...+ +.+|+|.+... +.+++
T Consensus 28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 107 (260)
T PRK10744 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP 107 (260)
T ss_pred EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc
Confidence 35677889999999999999999999999999998741 35787755320 01111
Q ss_pred hhHHHHHHHHhc----cc---ccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 194 MSVAKRVAEEFG----CR---LGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 194 ~~~~~~v~~~~~----~~---~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.++.+++..... .. ..+.+...+...+.. ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 108 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP---- 183 (260)
T PRK10744 108 MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP---- 183 (260)
T ss_pred CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCC----
Confidence 122222221110 00 001122222222221 12356778999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+ .+-.+||++||..+....++|.+++++.|++..
T Consensus 184 -----------------t~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 184 -----------------CSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred -----------------CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 3333332221111100 011469999999999889999999999999854
No 178
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.82 E-value=1.5e-20 Score=171.57 Aligned_cols=164 Identities=17% Similarity=0.181 Sum_probs=102.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~~v 200 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... +.++++ ++.+.+
T Consensus 19 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 97 (238)
T cd03249 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI 97 (238)
T ss_pred eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHh
Confidence 456677889999999999999999999999999984 55888866421 011111 111111
Q ss_pred HHHhcccccchhhhhhh------ccc-----C-CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 201 AEEFGCRLGQEVGYTIR------FED-----C-TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 201 ~~~~~~~~~~~v~~~~~------~~~-----~-~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
................. +.. . ......+..||+||+||++||++++.+|+++|||||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP----------- 166 (238)
T cd03249 98 RYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEA----------- 166 (238)
T ss_pred hccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCc-----------
Confidence 11000000000000000 000 0 011244678999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
...+++........ ....-++||++||..+... .+|.+++++.|++..
T Consensus 167 ----------~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~ 217 (238)
T cd03249 167 ----------TSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVE 217 (238)
T ss_pred ----------cccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEE
Confidence 33333322211110 0001145999999999886 899999999999853
No 179
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.3e-20 Score=176.41 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=110.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-------------chhhh-----------h
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-------------RVAAM-----------S 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-------------~i~~~-----------~ 195 (350)
+.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+.... .++++ +
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 99 (283)
T PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS 99 (283)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcccc
Confidence 3566778899999999999999999999999999874 558887663210 01111 1
Q ss_pred HHHHHHHH---hcccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEE---FGCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~---~~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.+++... .+... ...+.+.+...+... .++.+..||+||+||++||++|+.+|+++|||||
T Consensus 100 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEP----------- 168 (283)
T PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEP----------- 168 (283)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC-----------
Confidence 11222111 01100 011222233333322 3467889999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+.++++........ ..++ -++||++||+.+....++|.+++++.|.+.
T Consensus 169 ----------t~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~ 221 (283)
T PRK13636 169 ----------TAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221 (283)
T ss_pred ----------ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 44444433221111 1111 157999999999988899999999999885
No 180
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.82 E-value=1.4e-20 Score=173.85 Aligned_cols=166 Identities=15% Similarity=0.132 Sum_probs=108.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhh----------hhHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAA----------MSVAK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~----------~~~~~ 198 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .+++ .++.+
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 95 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEE 95 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHH
Confidence 3566778899999999999999999999999999874 557887653210 0111 12222
Q ss_pred HHHHHhccc------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcC------CCCcEEEEcCCCccccccc
Q psy9590 199 RVAEEFGCR------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDL------NNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 199 ~v~~~~~~~------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all------~~~~viIlDEpher~~~~d 265 (350)
++....... ....+...+...+... .++.+..||+||+||++||++|+ .+|+++|||||
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEP-------- 167 (258)
T PRK13548 96 VVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEP-------- 167 (258)
T ss_pred HHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCC--------
Confidence 222110000 0011222222222222 24667899999999999999999 59999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCcc---ccc--ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEP---NAW--RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~--~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ... .-.+||++||+.+....++|.+++++.|.+..
T Consensus 168 -------------t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 168 -------------TSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred -------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 33333332211111 000 01469999999999989999999999998753
No 181
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.82 E-value=1.6e-20 Score=179.30 Aligned_cols=168 Identities=14% Similarity=0.106 Sum_probs=110.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC--CCcEEEEcCC---------------cchhhhh-------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT--ARGKIGCTQP---------------RRVAAMS------- 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~--~~G~i~~~~~---------------~~i~~~~------- 195 (350)
+.+++..+|++|++++|+|+|||||||++++++|+..+. .+|+|.+... +.++++.
T Consensus 31 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l 110 (330)
T PRK09473 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSL 110 (330)
T ss_pred EEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhc
Confidence 356678889999999999999999999999999998543 3788866321 0111111
Q ss_pred -----HHHHHHHHh---c-ccc---cchhhhhhhcccCCC----ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 196 -----VAKRVAEEF---G-CRL---GQEVGYTIRFEDCTS----SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 196 -----~~~~v~~~~---~-~~~---~~~v~~~~~~~~~~~----~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
+.+.+.... + ... ...+...+...+... .+.....|||||+||++||+||+.+|++||+|||
T Consensus 111 ~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEP-- 188 (330)
T PRK09473 111 NPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP-- 188 (330)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC--
Confidence 112221111 0 000 011122222222221 1245678999999999999999999999999999
Q ss_pred cccccccccChhHHHhhhhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 260 RTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 260 r~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..++.........- ..+ -.++|+.||+.+....++|.++|++.|++.+.
T Consensus 189 -------------------ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 189 -------------------TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred -------------------CccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 444444333222110 000 14699999999999899999999999999764
No 182
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.82 E-value=9.1e-21 Score=191.36 Aligned_cols=166 Identities=11% Similarity=0.077 Sum_probs=111.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------------chhhh----------hHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------------RVAAM----------SVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------------~i~~~----------~~~ 197 (350)
+.+++..++++|++++|+|+||||||||+++++|... +.+|.|.+.... .++++ ++.
T Consensus 26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 104 (510)
T PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVK 104 (510)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHH
Confidence 3456778899999999999999999999999999874 558888764210 01111 122
Q ss_pred HHHHHHhcc--cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHH
Q psy9590 198 KRVAEEFGC--RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLS 274 (350)
Q Consensus 198 ~~v~~~~~~--~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~ 274 (350)
+++...... ...+.+...+...+... .++.+..|||||+||++||++|+.+|++||||||
T Consensus 105 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEP----------------- 167 (510)
T PRK15439 105 ENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEP----------------- 167 (510)
T ss_pred HHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC-----------------
Confidence 222211000 00112222233333322 3467889999999999999999999999999999
Q ss_pred hhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 275 KFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. + -.+||++||+.+....++|.+++++.|.+..
T Consensus 168 ----t~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 220 (510)
T PRK15439 168 ----TASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL 220 (510)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 34444433222211000 0 1469999999999999999999999999853
No 183
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.82 E-value=8.7e-21 Score=175.25 Aligned_cols=165 Identities=18% Similarity=0.189 Sum_probs=108.0
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-------c-------------hhhhhH----
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-------R-------------VAAMSV---- 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-------~-------------i~~~~~---- 196 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+.... . +.+++.
T Consensus 22 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 100 (258)
T PRK11701 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRD 100 (258)
T ss_pred eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCccc
Confidence 456777899999999999999999999999999874 558888663211 0 111110
Q ss_pred --------HHHHHHH---hccc----ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 197 --------AKRVAEE---FGCR----LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 197 --------~~~v~~~---~~~~----~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
.+.+... ++.. ....+...+...+.. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 101 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP-- 178 (258)
T PRK11701 101 GLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP-- 178 (258)
T ss_pred ccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC--
Confidence 0111110 0000 001111222233332 12467789999999999999999999999999999
Q ss_pred cccccccccChhHHHhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 260 RTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 260 r~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.......... .+ -.+||++||..+....++|.+++++.|++.+
T Consensus 179 -------------------t~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 179 -------------------TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred -------------------cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 3333333222111100 00 1469999999999999999999999999854
No 184
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.3e-20 Score=170.92 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=103.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhhhh---------HHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAAMS---------VAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~~~---------~~~~ 199 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .+++.+ +.++
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 96 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMEN 96 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHH
Confidence 4566778899999999999999999999999999984 558988764210 011111 1111
Q ss_pred HHHHhcccccchhhhhhhc------ccC------CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRF------EDC------TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~------~~~------~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+...........+...+.. .+. ......+..||+||+||++||++++.+|+++|||||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP---------- 166 (229)
T cd03254 97 IRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEA---------- 166 (229)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc----------
Confidence 1100000000011110000 000 011234678999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
...++....+..... ..+-++||++||..+.. ..+|.+++++.|++..
T Consensus 167 -----------~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~~d~i~~l~~g~~~~ 217 (229)
T cd03254 167 -----------TSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTI-KNADKILVLDDGKIIE 217 (229)
T ss_pred -----------cccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-hhCCEEEEEeCCeEEE
Confidence 333333222111100 00014699999999987 4699999999999853
No 185
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.82 E-value=2.8e-20 Score=168.23 Aligned_cols=157 Identities=19% Similarity=0.187 Sum_probs=103.0
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------cchhhh------------hHHHHHHHHh----
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------RRVAAM------------SVAKRVAEEF---- 204 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------~~i~~~------------~~~~~v~~~~---- 204 (350)
++++|++++|+|+|||||||+++++.|... +.+|+|.+... +.+++. ++.+.+....
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIP-PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 478999999999999999999999999874 45788766421 112221 1222222110
Q ss_pred cc---c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhh
Q psy9590 205 GC---R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFK 277 (350)
Q Consensus 205 ~~---~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~ 277 (350)
+. . ....+...+...+... .++.+..||+||+||++||++++.+|+++|+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP-------------------- 140 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEP-------------------- 140 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC--------------------
Confidence 00 0 0012222333333322 2466789999999999999999999999999999
Q ss_pred hcCcccceeccCCccc---cc-ceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 278 KNQRLEPLYNKYEEPN---AW-RISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 278 ~~~~v~~~~~~~~~~~---~~-~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++......... .+ +-.+||++||..+....++|.++++ .|++.
T Consensus 141 -~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~ 191 (223)
T TIGR03771 141 -FTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI 191 (223)
T ss_pred -cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE
Confidence 333333322211110 00 1146999999999998999999999 58875
No 186
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.82 E-value=1.8e-20 Score=173.93 Aligned_cols=165 Identities=16% Similarity=0.188 Sum_probs=108.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------------cchhhh------------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------------RRVAAM------------ 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------------~~i~~~------------ 194 (350)
.+++..++++|++++|+|+|||||||++++++|+.. +.+|+|.+... +.++++
T Consensus 27 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 105 (265)
T TIGR02769 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM 105 (265)
T ss_pred eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCC
Confidence 566788899999999999999999999999999874 55888766321 011111
Q ss_pred hHHHHHHHHh----ccc---ccchhhhhhhcccCC-C-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 195 SVAKRVAEEF----GCR---LGQEVGYTIRFEDCT-S-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 195 ~~~~~v~~~~----~~~---~~~~v~~~~~~~~~~-~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
++.+++.... +.. ....+...+...+.. . .+..+..||+||+||++||++++.+|++||||||
T Consensus 106 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEP-------- 177 (265)
T TIGR02769 106 TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA-------- 177 (265)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC--------
Confidence 1112221110 000 011222233333332 1 2467789999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++......... ...+ -.+||++||+.+....++|.+++++.|.+..
T Consensus 178 -------------t~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 178 -------------VSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred -------------cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 33333322111110 0000 1469999999999989999999999998854
No 187
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.2e-20 Score=177.12 Aligned_cols=166 Identities=19% Similarity=0.165 Sum_probs=109.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------------cchhhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------------RRVAAM--------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------------~~i~~~--------- 194 (350)
+.+++...+++|++++|+|+||||||||+++++|... +.+|.|.+... +.++++
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 3556778899999999999999999999999999874 55787754210 011111
Q ss_pred --hHHHHHHHHh---cccc---cchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 195 --SVAKRVAEEF---GCRL---GQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 195 --~~~~~v~~~~---~~~~---~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
++.+++.... +... ...+...+...+.. ..++.+..||+||+||++||+|++.+|++||||||
T Consensus 105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEP------- 177 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP------- 177 (289)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC-------
Confidence 1222222110 1000 01122223333332 12466789999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ...+ -.+||++||+.+....++|.+++++.|++..
T Consensus 178 --------------t~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 178 --------------TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231 (289)
T ss_pred --------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 44444433322111 0000 1469999999999989999999999998753
No 188
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.2e-20 Score=171.57 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=102.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhhh---------hHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAAM---------SVAKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~~---------~~~~~v 200 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .+++. ++.+++
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl 96 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENI 96 (234)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHh
Confidence 456777899999999999999999999999999984 568888663210 01111 111222
Q ss_pred HHHhcccccchhh---------hhhhcc--cCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 201 AEEFGCRLGQEVG---------YTIRFE--DCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 201 ~~~~~~~~~~~v~---------~~~~~~--~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
...........+. ..+... ... ..+..+..||+||+||+.||++++.+|+++|||||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP----------- 165 (234)
T cd03251 97 AYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEA----------- 165 (234)
T ss_pred hccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc-----------
Confidence 1100000000000 000000 000 12345678999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..++.......... ..+-++||++||..+.... +|.+++++.|.+.
T Consensus 166 ----------~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~ 215 (234)
T cd03251 166 ----------TSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIV 215 (234)
T ss_pred ----------cccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEe
Confidence 333333322211110 0011469999999998865 9999999999885
No 189
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.7e-20 Score=174.23 Aligned_cols=167 Identities=17% Similarity=0.202 Sum_probs=107.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC--C--CCCcEEEEcCC-------------cchhhh--------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG--F--TARGKIGCTQP-------------RRVAAM-------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~--~--~~~G~i~~~~~-------------~~i~~~-------- 194 (350)
+.+++..++.+|++++|+|+||||||||+++++|+.. . +.+|+|.+... +.++++
T Consensus 36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (268)
T PRK14248 36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP 115 (268)
T ss_pred eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc
Confidence 4566778899999999999999999999999999753 1 45787755310 011111
Q ss_pred -hHHHHHHHHh---cccc----cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 195 -SVAKRVAEEF---GCRL----GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 195 -~~~~~v~~~~---~~~~----~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
++.+++.... +... .+.+...+...+.. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 116 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP---- 191 (268)
T PRK14248 116 KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEP---- 191 (268)
T ss_pred ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCC----
Confidence 2222332111 0000 01111111111111 12356788999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+ .+-.+||++||+.+....++|.+++++.|.+..
T Consensus 192 -----------------t~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 192 -----------------ASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred -----------------CcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence 3333333222111100 001469999999999999999999999998853
No 190
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.82 E-value=2e-20 Score=169.49 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=108.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC--CCCcEEEEcCC------------------cchhhhhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF--TARGKIGCTQP------------------RRVAAMSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~--~~~G~i~~~~~------------------~~i~~~~~~~~ 199 (350)
+.+++..++++|++++|+|+|||||||++++++|.... +.+|+|.+... ..+...++.++
T Consensus 22 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~en 101 (226)
T cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRET 101 (226)
T ss_pred cccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHH
Confidence 45677888999999999999999999999999998741 45787755310 11111233444
Q ss_pred HHHHh--cccc--c-----chhhh-hhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 200 VAEEF--GCRL--G-----QEVGY-TIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 200 v~~~~--~~~~--~-----~~v~~-~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.... .... . ..+.. .+...+... .++.+..||+||+||+++|++++.+|+++|||||
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP----------- 170 (226)
T cd03234 102 LTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEP----------- 170 (226)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCC-----------
Confidence 43211 1000 0 01111 222222222 2356789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEeccc-ccccccCCEEEEEeCCeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIA-ETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~ia-e~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.......... ++ -.+||++||.. +....++|.+++++.|++.
T Consensus 171 ----------~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 171 ----------TSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223 (226)
T ss_pred ----------CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence 3344433222211100 00 14699999998 5788999999999999874
No 191
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=2.1e-20 Score=167.07 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=102.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhH---HHHHHHHhccc--ccchhhh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSV---AKRVAEEFGCR--LGQEVGY 214 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~---~~~v~~~~~~~--~~~~v~~ 214 (350)
..+++...+.+|++++|+|+||||||||++.++|+. .+.+|.|.+.. ..+...+. ...++..+... ....+..
T Consensus 23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g-~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ 100 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-EAEEGKIEIDG-IDISTIPLEDLRSSLTIIPQDPTLFSGTIRS 100 (207)
T ss_pred cccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECC-EEhHHCCHHHHHhhEEEEecCCcccCccHHH
Confidence 456778889999999999999999999999999987 45588887632 11111100 00010000000 0001110
Q ss_pred hhhcc---------cCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccce
Q psy9590 215 TIRFE---------DCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPL 285 (350)
Q Consensus 215 ~~~~~---------~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~ 285 (350)
.+.+. .....+..+..||+||+||++||++++.+|+++||||| +..+++.
T Consensus 101 ~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP---------------------~~~LD~~ 159 (207)
T cd03369 101 NLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA---------------------TASIDYA 159 (207)
T ss_pred HhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC---------------------cccCCHH
Confidence 00000 00012356778999999999999999999999999999 3333332
Q ss_pred eccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 286 YNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 286 ~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
..+..... ..+-.++|++||..+.... +|.+++++.|++.
T Consensus 160 ~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~ 202 (207)
T cd03369 160 TDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVK 202 (207)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEE
Confidence 22111100 0001469999999998765 8999999999874
No 192
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2e-20 Score=173.98 Aligned_cols=162 Identities=17% Similarity=0.242 Sum_probs=104.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCC-------------cchhhh--------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQP-------------RRVAAM-------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~-------------~~i~~~-------- 194 (350)
+.+++..++++|++++|+|+||||||||+++++|...+ +.+|.|.+... +.++++
T Consensus 28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 107 (269)
T PRK14259 28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP 107 (269)
T ss_pred EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch
Confidence 45677889999999999999999999999999998642 46788765311 011111
Q ss_pred -hHHHHHHHHh---ccc--ccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 195 -SVAKRVAEEF---GCR--LGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 195 -~~~~~v~~~~---~~~--~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
++.+++.... +.. ..+.+...+...+.. ..++.+..||+||+||++||++++.+|++||||||
T Consensus 108 ~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP------ 181 (269)
T PRK14259 108 KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEP------ 181 (269)
T ss_pred hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC------
Confidence 2222222110 000 001111122222211 12456778999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeC
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~ 322 (350)
+..+++.........+ .+-.+||++||..+....++|.+++++.
T Consensus 182 ---------------t~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 182 ---------------CSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred ---------------CccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 3333333222111100 0014699999999999999999999997
No 193
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.5e-20 Score=189.67 Aligned_cols=166 Identities=16% Similarity=0.128 Sum_probs=113.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhh-------------h
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAA-------------M 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~-------------~ 194 (350)
+.+++..++++|++++|+|+||||||||+++++|...++.+|+|.+... ..+++ .
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM 356 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCC
Confidence 4677888999999999999999999999999999985446888876321 00111 1
Q ss_pred hHHHHHHHHh--cc------c---ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 195 SVAKRVAEEF--GC------R---LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 195 ~~~~~v~~~~--~~------~---~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
++.+++.... .. . ....+...+...+.. ..++.+..|||||+||++||++++.+|++||||||
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEP---- 432 (506)
T PRK13549 357 GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEP---- 432 (506)
T ss_pred CHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCC----
Confidence 2222222110 00 0 001122333333332 23577889999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+. + -.+||++||+.+....+||.+++++.|++.
T Consensus 433 -----------------t~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 433 -----------------TRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484 (506)
T ss_pred -----------------CCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 44454443332211100 0 146999999999999999999999999874
No 194
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.5e-20 Score=189.71 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=111.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC-CCCcEEEEcCC------------cchhh----------hhH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF-TARGKIGCTQP------------RRVAA----------MSV 196 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~-~~~G~i~~~~~------------~~i~~----------~~~ 196 (350)
+.+++..++++|++++|+|+||||||||+++++|...+ +.+|.|.+... +.+++ +++
T Consensus 20 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 99 (506)
T PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSV 99 (506)
T ss_pred eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcH
Confidence 45678889999999999999999999999999998854 36898866321 11221 122
Q ss_pred HHHHHHHhcc------c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 197 AKRVAEEFGC------R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 197 ~~~v~~~~~~------~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
.+++...... . ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP--------- 170 (506)
T PRK13549 100 LENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEP--------- 170 (506)
T ss_pred HHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC---------
Confidence 2333211100 0 0011222233333322 3467889999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcccccc----eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNAWR----ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~----~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+.+ -.+||++||+.+....++|.+++++.|++.
T Consensus 171 ------------t~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~ 222 (506)
T PRK13549 171 ------------TASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222 (506)
T ss_pred ------------CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe
Confidence 334443332222110000 136999999999999999999999999874
No 195
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.82 E-value=1.1e-20 Score=173.99 Aligned_cols=160 Identities=14% Similarity=0.146 Sum_probs=105.5
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhh------------HHHHHHHHhcccc
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS------------VAKRVAEEFGCRL 208 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~------------~~~~v~~~~~~~~ 208 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.....+++++ ...++....+. .
T Consensus 20 l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~-~ 97 (251)
T PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-PDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGT-K 97 (251)
T ss_pred EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCccCEEEeccccccccccChhHHHHHhccccc-c
Confidence 445667889999999999999999999999999874 558887664322222221 11111100000 0
Q ss_pred cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceec
Q psy9590 209 GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYN 287 (350)
Q Consensus 209 ~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~ 287 (350)
...+...+...+... .++.+..||+||+||++||++++.+|+++||||| +..++....
T Consensus 98 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP---------------------t~~LD~~~~ 156 (251)
T PRK09544 98 KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEP---------------------TQGVDVNGQ 156 (251)
T ss_pred HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC---------------------CcCCCHHHH
Confidence 112222333333322 2466789999999999999999999999999999 334443332
Q ss_pred cCCcccc---c-c-eeEEEEEecccccccccCCEEEEEeCC
Q psy9590 288 KYEEPNA---W-R-ISRVVIATNIAETSLTIDGIFYVVDPG 323 (350)
Q Consensus 288 ~~~~~~~---~-~-~~~vi~sT~iae~s~ti~d~~~vid~G 323 (350)
......+ . . -.+||++||..+....++|.+++++.+
T Consensus 157 ~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~ 197 (251)
T PRK09544 157 VALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHH 197 (251)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCc
Confidence 2211100 0 0 146999999999999999999999753
No 196
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.82 E-value=8.2e-21 Score=168.14 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=102.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC-CCCCcEEEEcCCcchhhhhHHHHHHHHhcc---cccchhhhh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG-FTARGKIGCTQPRRVAAMSVAKRVAEEFGC---RLGQEVGYT 215 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~-~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~---~~~~~v~~~ 215 (350)
+.+++..++++|++++|+|+|||||||++++++|... .+.+|+|.+. ...+........++..... .....+...
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~-g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 102 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLIN-GRPLDKRSFRKIIGYVPQDDILHPTLTVRET 102 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC-CEeCchHhhhheEEEccCcccCCCCCcHHHH
Confidence 3566778899999999999999999999999999871 3458998774 2222211000111100000 000111111
Q ss_pred hhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc
Q psy9590 216 IRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW 295 (350)
Q Consensus 216 ~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~ 295 (350)
+.+. .....||+||+||++||++++.+|+++|+||| ...++....+.....+.
T Consensus 103 i~~~------~~~~~LS~G~~qrv~laral~~~p~illlDEP---------------------~~~LD~~~~~~l~~~l~ 155 (194)
T cd03213 103 LMFA------AKLRGLSGGERKRVSIALELVSNPSLLFLDEP---------------------TSGLDSSSALQVMSLLR 155 (194)
T ss_pred HHHH------HHhccCCHHHHHHHHHHHHHHcCCCEEEEeCC---------------------CcCCCHHHHHHHHHHHH
Confidence 1110 01127999999999999999999999999999 33333332221111000
Q ss_pred ----ceeEEEEEecccc-cccccCCEEEEEeCCeee
Q psy9590 296 ----RISRVVIATNIAE-TSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 296 ----~~~~vi~sT~iae-~s~ti~d~~~vid~G~~~ 326 (350)
+-++||++||..+ ....++|.+++++.|++.
T Consensus 156 ~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 156 RLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEE
Confidence 0146999999996 677899999999999874
No 197
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.3e-20 Score=176.02 Aligned_cols=164 Identities=18% Similarity=0.157 Sum_probs=108.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhh-----------hhHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAA-----------MSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~-----------~~~~ 197 (350)
+.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+... +.+++ .++.
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 100 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQ 100 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHH
Confidence 3456777899999999999999999999999999984 55888866321 01111 1122
Q ss_pred HHHHHHh---cccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccCh
Q psy9590 198 KRVAEEF---GCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDP 270 (350)
Q Consensus 198 ~~v~~~~---~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~ 270 (350)
+++.... +... ...+...+...+... .++.+..||+||+||++||++++.+|++||||||
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP------------- 167 (279)
T PRK13635 101 DDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEA------------- 167 (279)
T ss_pred HHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC-------------
Confidence 2222110 0000 011222333333322 3467789999999999999999999999999999
Q ss_pred hHHHhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 271 TKLSKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 271 l~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+ .+ -++||++||+.+... .+|.+++++.|++.
T Consensus 168 --------t~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~ 219 (279)
T PRK13635 168 --------TSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL 219 (279)
T ss_pred --------cccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE
Confidence 4444443322211100 01 147999999999886 59999999999875
No 198
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.82 E-value=1.9e-20 Score=173.37 Aligned_cols=166 Identities=16% Similarity=0.126 Sum_probs=108.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC--CCcEEEEcCCc----------------chhh--------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT--ARGKIGCTQPR----------------RVAA-------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~--~~G~i~~~~~~----------------~i~~-------- 193 (350)
+.+++...+.+|++++|+|+|||||||++++++|...+. .+|+|.+.... .+++
T Consensus 19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (262)
T PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLV 98 (262)
T ss_pred EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccc
Confidence 356677889999999999999999999999999987543 24777653210 0111
Q ss_pred --hhHHHHHHHHhc--------------ccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcC
Q psy9590 194 --MSVAKRVAEEFG--------------CRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDE 256 (350)
Q Consensus 194 --~~~~~~v~~~~~--------------~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDE 256 (350)
.++.+++..... ......+...+...+... .++.+..||+||+||++||++++.+|++|||||
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 178 (262)
T PRK09984 99 NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADE 178 (262)
T ss_pred cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 112222221100 000011222222223322 246677999999999999999999999999999
Q ss_pred CCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 257 AHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 257 pher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
| +..++....+.... ..++ -.+||++||+.+....++|.+++++.|.+.
T Consensus 179 P---------------------t~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 179 P---------------------IASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232 (262)
T ss_pred c---------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9 33444333222111 1110 146999999999999999999999999884
No 199
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.8e-20 Score=174.82 Aligned_cols=165 Identities=15% Similarity=0.195 Sum_probs=108.1
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-------------chhhh-----------hH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-------------RVAAM-----------SV 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-------------~i~~~-----------~~ 196 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+.... .+++. ++
T Consensus 18 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (275)
T PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTV 96 (275)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccH
Confidence 456777899999999999999999999999999874 557887653210 01111 11
Q ss_pred HHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 197 AKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 197 ~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.+.+.... +.. ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 97 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP------------ 164 (275)
T PRK13639 97 EEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEP------------ 164 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC------------
Confidence 12221100 000 0011222222223322 2466789999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCcc---cccc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEP---NAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ...+ -.+||++||+.+....++|.+++++.|.+..
T Consensus 165 ---------t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~ 217 (275)
T PRK13639 165 ---------TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK 217 (275)
T ss_pred ---------CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 33333332221111 0000 1469999999999999999999999998854
No 200
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.82 E-value=1.5e-20 Score=189.48 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=111.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhhh----------hHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAAM----------SVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~~----------~~~ 197 (350)
+.+++..++.+|++++|+||||||||||+++++|... +.+|+|.+... +.++++ ++.
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIA 97 (501)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHH
Confidence 3567788899999999999999999999999999984 55888876321 112221 222
Q ss_pred HHHHHHhcc-------c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 198 KRVAEEFGC-------R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 198 ~~v~~~~~~-------~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
+++...... . ....+...+...+... .++.+..||+||+||++||+||+.+|++||||||
T Consensus 98 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP--------- 168 (501)
T PRK10762 98 ENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEP--------- 168 (501)
T ss_pred HHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC---------
Confidence 333211000 0 0011222233333322 2467889999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. .-.+||++||+.+....++|.+++++.|++..
T Consensus 169 ------------t~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 169 ------------TDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA 221 (501)
T ss_pred ------------cCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 44444433322211000 01469999999999999999999999998753
No 201
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.82 E-value=2e-20 Score=172.28 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=107.9
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------------------------chhh--
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------------------------RVAA-- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------------------------~i~~-- 193 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .+++
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 93 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF 93 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence 3466778899999999999999999999999999874 557887653210 0111
Q ss_pred --------hhHHHHHHHH----hccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 194 --------MSVAKRVAEE----FGCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 194 --------~~~~~~v~~~----~~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
.++.+++... .+.. ....+...+...+... .+..+..||+||+||++||++++.+|++||||||
T Consensus 94 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 94 QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred cCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1122222210 0000 0011122222222221 2356678999999999999999999999999999
Q ss_pred CccccccccccChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 258 HERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 258 her~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ..++ -.+||++||..+....++|.+++++.|++.+
T Consensus 174 ---------------------~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 174 ---------------------TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred ---------------------cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 33333332221111 0000 1469999999999889999999999999864
No 202
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.82 E-value=2e-20 Score=169.42 Aligned_cols=169 Identities=13% Similarity=0.087 Sum_probs=110.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~~ 199 (350)
+.+++...+++|++++|+|+||||||||+++++|.. .+.+|+|.+... +.+++. ++.++
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en 100 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDN 100 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHH
Confidence 356678889999999999999999999999999987 455888866421 011111 22222
Q ss_pred HHHHh---ccc-ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHH
Q psy9590 200 VAEEF---GCR-LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKL 273 (350)
Q Consensus 200 v~~~~---~~~-~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~ 273 (350)
+.... +.. ....+...+...+.. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 101 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP---------------- 164 (225)
T PRK10247 101 LIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI---------------- 164 (225)
T ss_pred HHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC----------------
Confidence 22110 100 011122233333332 12467789999999999999999999999999999
Q ss_pred HhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEe--CCeeeeEeee
Q psy9590 274 SKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVD--PGFVKQKVYN 331 (350)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid--~G~~~~~~~~ 331 (350)
+..+++...+.....+. + -.+||++||..+.. ..+|.++++| .|++++-+|.
T Consensus 165 -----t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~-~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 165 -----TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI-NHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred -----cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH-HhCCEEEEEecccchHhhhhhc
Confidence 33443333222111000 0 13699999999987 4799999997 8888776653
No 203
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.82 E-value=1.8e-20 Score=173.69 Aligned_cols=165 Identities=12% Similarity=0.097 Sum_probs=108.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------Cc-chhhhhHHHHHHHHh---ccccc
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------PR-RVAAMSVAKRVAEEF---GCRLG 209 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~~-~i~~~~~~~~v~~~~---~~~~~ 209 (350)
.+++..++.+|++++|+|+|||||||++++++|+.. +.+|.|.+.. .. .....++.+++.... +....
T Consensus 40 l~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~ 118 (264)
T PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-PTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRK 118 (264)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 456778899999999999999999999999999984 5578775532 11 111233444443211 11110
Q ss_pred ---chhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccce
Q psy9590 210 ---QEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPL 285 (350)
Q Consensus 210 ---~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~ 285 (350)
..+...++..+... .+..+..||+||+||++||++++.+|+++||||| ...+++.
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEP---------------------t~gLD~~ 177 (264)
T PRK13546 119 EIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEA---------------------LSVGDQT 177 (264)
T ss_pred HHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCc---------------------cccCCHH
Confidence 11112222222222 2456789999999999999999999999999999 3333322
Q ss_pred eccCCcccc---c-ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 286 YNKYEEPNA---W-RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 286 ~~~~~~~~~---~-~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
........+ . .-.+||++||..+....++|.+++++.|.+..
T Consensus 178 ~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 178 FAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 111110000 0 01469999999999889999999999999853
No 204
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.3e-20 Score=171.73 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=107.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC-CC---CCcEEEEcCC-------------cchhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG-FT---ARGKIGCTQP-------------RRVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~-~~---~~G~i~~~~~-------------~~i~~--------- 193 (350)
+.+++..++.+|++++|+|+||||||||+++++|... .+ .+|+|.+... +.+++
T Consensus 20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (252)
T PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP 99 (252)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc
Confidence 3456777899999999999999999999999999743 12 3687755310 00111
Q ss_pred hhHHHHHHHHh---ccccc----chhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 194 MSVAKRVAEEF---GCRLG----QEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 194 ~~~~~~v~~~~---~~~~~----~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.++.+++.... +.... ..+...+...+.. ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP---- 175 (252)
T PRK14239 100 MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEP---- 175 (252)
T ss_pred CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC----
Confidence 12333333211 11000 1111111111111 12356778999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+ .+-++||++||..+....++|.+++++.|.+..
T Consensus 176 -----------------t~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 176 -----------------TSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred -----------------ccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 3333333222111100 001469999999999999999999999999853
No 205
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.9e-20 Score=170.90 Aligned_cols=166 Identities=18% Similarity=0.214 Sum_probs=106.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC--CC--CCcEEEEcCCc-------------chhh---------h
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG--FT--ARGKIGCTQPR-------------RVAA---------M 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~--~~--~~G~i~~~~~~-------------~i~~---------~ 194 (350)
.+++..++++|++++|+|+|||||||++++++|+.+ ++ .+|+|.+.... .+++ .
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 98 (250)
T PRK14245 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPK 98 (250)
T ss_pred EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcc
Confidence 456677899999999999999999999999998632 22 37877553110 0111 1
Q ss_pred hHHHHHHHHh---ccc----ccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 195 SVAKRVAEEF---GCR----LGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 195 ~~~~~v~~~~---~~~----~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
++.+++.... +.. ....+...++..+.. ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 99 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP----- 173 (250)
T PRK14245 99 SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEP----- 173 (250)
T ss_pred cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC-----
Confidence 2223332211 000 001122223322221 12356778999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. +-.+||++||..+....++|.+++++.|.+..
T Consensus 174 ----------------t~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 174 ----------------ASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred ----------------CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 33333332221111000 01469999999999999999999999998854
No 206
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.6e-20 Score=174.80 Aligned_cols=164 Identities=13% Similarity=0.168 Sum_probs=106.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh-----------hHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM-----------SVAK 198 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~-----------~~~~ 198 (350)
.+++..++++|++++|+|+||||||||+++++|... +.+|+|.+... +.+++. ++.+
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 103 (271)
T PRK13632 25 LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVED 103 (271)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHH
Confidence 456778899999999999999999999999999974 55788765321 011111 1222
Q ss_pred HHHHHhc---ccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 199 RVAEEFG---CRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 199 ~v~~~~~---~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
++..... ... ...+...+...+... .++.+..||+||+||++||+||+.+|+++|||||
T Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP-------------- 169 (271)
T PRK13632 104 DIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES-------------- 169 (271)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC--------------
Confidence 2221100 000 001112222222222 2466789999999999999999999999999999
Q ss_pred HHHhhhhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 272 KLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
...+++......... ..+ -++||++||..+... .+|.+++++.|++..
T Consensus 170 -------~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~ 222 (271)
T PRK13632 170 -------TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIA 222 (271)
T ss_pred -------cccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEE
Confidence 444444332222110 011 146999999999874 799999999999853
No 207
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.1e-20 Score=172.63 Aligned_cols=167 Identities=17% Similarity=0.222 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCCc-------------chhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQPR-------------RVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~~-------------~i~~--------- 193 (350)
+.+++...+++|++++|+|+|||||||+++++.|...+ +.+|+|.+.... .+++
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (258)
T PRK14241 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFP 98 (258)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCC
Confidence 35667788999999999999999999999999998743 258888663210 0111
Q ss_pred -hhHHHHHHHHh---cc-c---ccchhhhhhhcccC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 194 -MSVAKRVAEEF---GC-R---LGQEVGYTIRFEDC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 194 -~~~~~~v~~~~---~~-~---~~~~v~~~~~~~~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
.++.+++.... +. . ..+.+...+...+. ...+..+..||+||+||++||++++.+|+++|||||
T Consensus 99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP--- 175 (258)
T PRK14241 99 TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP--- 175 (258)
T ss_pred CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC---
Confidence 12223332211 10 0 00111112222221 122466789999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEe------CCeeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVD------PGFVKQ 327 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid------~G~~~~ 327 (350)
+..+++........ ..+.-.+||++||..+....++|.+++++ .|++.+
T Consensus 176 ------------------t~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 176 ------------------CSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred ------------------CccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 33333322221111 00001469999999999999999999997 787754
No 208
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.5e-20 Score=171.56 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=108.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC--C--CCCcEEEEcCCc-------------chhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG--F--TARGKIGCTQPR-------------RVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~--~--~~~G~i~~~~~~-------------~i~~--------- 193 (350)
+.+++..++++|++++|+|+||||||||+++++|... + +.+|+|.+.... .+++
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (252)
T PRK14256 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFP 98 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCC
Confidence 3556777899999999999999999999999999864 2 246877553210 0111
Q ss_pred -hhHHHHHHHHh---cccc----cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 194 -MSVAKRVAEEF---GCRL----GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 194 -~~~~~~v~~~~---~~~~----~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
.++.+++...+ +... ...+...+...+.. ..+..+..||+||+||++||++++.+|++||||||
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP--- 175 (252)
T PRK14256 99 AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP--- 175 (252)
T ss_pred cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC---
Confidence 12223332211 1000 01122222222221 12356778999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..++......... ..++-.+||++||..+....++|.+++++.|++.+.
T Consensus 176 ------------------~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 176 ------------------ASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred ------------------cccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 33333322211111 000114699999999999999999999999998643
No 209
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.81 E-value=2.2e-20 Score=166.24 Aligned_cols=158 Identities=16% Similarity=0.080 Sum_probs=103.0
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc----------chhh----------hhHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR----------RVAA----------MSVAKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~----------~i~~----------~~~~~~v 200 (350)
.+++..++++|++++|+|+|||||||+++.++|... +.+|+|.+.... .+++ .++.+++
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 94 (201)
T cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENL 94 (201)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHH
Confidence 556778899999999999999999999999999874 558888653210 1111 1222222
Q ss_pred HHHhcccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhc
Q psy9590 201 AEEFGCRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKN 279 (350)
Q Consensus 201 ~~~~~~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~ 279 (350)
...........+...+...+... .++.+..||+||+||+++|++++.+|+++||||| +
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP---------------------t 153 (201)
T cd03231 95 RFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP---------------------T 153 (201)
T ss_pred HhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC---------------------C
Confidence 21111001111222222222222 2466789999999999999999999999999999 4
Q ss_pred CcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEE
Q psy9590 280 QRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVV 320 (350)
Q Consensus 280 ~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vi 320 (350)
..+++.........+. + -.++|++||..+.....++..++.
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 154 TALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 4444333222211110 0 146999999999999999988776
No 210
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1e-20 Score=167.31 Aligned_cols=157 Identities=14% Similarity=0.081 Sum_probs=100.6
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC-CCCCcEEEEcCCcchhhhhHHHHHHHHhcc---cccchhhhhh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG-FTARGKIGCTQPRRVAAMSVAKRVAEEFGC---RLGQEVGYTI 216 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~-~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~---~~~~~v~~~~ 216 (350)
.+++..++++|++++|+|+|||||||+++.++|... .+.+|++.+. ...+. ......++..... .....+...+
T Consensus 23 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~-g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (192)
T cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILIN-GRPLD-KNFQRSTGYVEQQDVHSPNLTVREAL 100 (192)
T ss_pred EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEEC-CEehH-HHhhhceEEecccCccccCCcHHHHH
Confidence 456677899999999999999999999999999753 3568998774 32322 0001111110000 0001111111
Q ss_pred hcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc---
Q psy9590 217 RFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN--- 293 (350)
Q Consensus 217 ~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~--- 293 (350)
.+.. ....||+||+||++||++++.+|+++|+||| ...++..........
T Consensus 101 ~~~~------~~~~LSgGe~qrv~la~al~~~p~vlllDEP---------------------~~~LD~~~~~~l~~~l~~ 153 (192)
T cd03232 101 RFSA------LLRGLSVEQRKRLTIGVELAAKPSILFLDEP---------------------TSGLDSQAAYNIVRFLKK 153 (192)
T ss_pred HHHH------HHhcCCHHHhHHHHHHHHHhcCCcEEEEeCC---------------------CcCCCHHHHHHHHHHHHH
Confidence 1100 0117999999999999999999999999999 333333222211110
Q ss_pred ccc-eeEEEEEeccccc-ccccCCEEEEEeC-Ceee
Q psy9590 294 AWR-ISRVVIATNIAET-SLTIDGIFYVVDP-GFVK 326 (350)
Q Consensus 294 ~~~-~~~vi~sT~iae~-s~ti~d~~~vid~-G~~~ 326 (350)
..+ -++||++||..+. ...++|.+++++. |++.
T Consensus 154 ~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 154 LADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189 (192)
T ss_pred HHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence 000 1469999999984 6788999999998 8874
No 211
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.6e-20 Score=171.34 Aligned_cols=167 Identities=15% Similarity=0.211 Sum_probs=106.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCC-------------cchhhh--------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQP-------------RRVAAM-------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~-------------~~i~~~-------- 194 (350)
+.+++..++.+|++++|+|+||||||||+++++|...+ +.+|+|.+... +.++++
T Consensus 20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (251)
T PRK14244 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP 99 (251)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc
Confidence 34567788999999999999999999999999998642 35788765320 001111
Q ss_pred -hHHHHHHHHh---ccc-----ccchhhhhhhcccCCC-----ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 195 -SVAKRVAEEF---GCR-----LGQEVGYTIRFEDCTS-----SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 195 -~~~~~v~~~~---~~~-----~~~~v~~~~~~~~~~~-----~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
++.+++.... +.. ....+...++..+... .+..+..||+||+||++||++++.+|++||||||
T Consensus 100 ~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP--- 176 (251)
T PRK14244 100 KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP--- 176 (251)
T ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC---
Confidence 1122222110 000 0011112222222211 2346678999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ .+-++||++||..+....++|.+++++.|.+..
T Consensus 177 ------------------t~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 228 (251)
T PRK14244 177 ------------------CSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228 (251)
T ss_pred ------------------CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 2233322211111000 001469999999999989999999999999854
No 212
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.81 E-value=9.7e-21 Score=174.37 Aligned_cols=165 Identities=16% Similarity=0.169 Sum_probs=108.1
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-------c-------------hhhhhH----
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-------R-------------VAAMSV---- 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-------~-------------i~~~~~---- 196 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... . +.+...
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (253)
T TIGR02323 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRD 97 (253)
T ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCccc
Confidence 467788999999999999999999999999999974 558888764211 0 111100
Q ss_pred --------HHHHHHH---hccc----ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 197 --------AKRVAEE---FGCR----LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 197 --------~~~v~~~---~~~~----~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
.+.+... .... ....+...+...+.. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 98 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP-- 175 (253)
T TIGR02323 98 GLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP-- 175 (253)
T ss_pred ccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC--
Confidence 0111110 0000 001111222222332 22467789999999999999999999999999999
Q ss_pred cccccccccChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 260 RTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 260 r~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++...+.... ...+ -.+||++||..+....++|.+++++.|++..
T Consensus 176 -------------------~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 176 -------------------TGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred -------------------CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 33333332222111 0000 1469999999999988999999999998853
No 213
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.81 E-value=1.9e-20 Score=172.82 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=108.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhh----------hhHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAA----------MSVAK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~----------~~~~~ 198 (350)
+.+++...+++|++++|+|+|||||||++++++|... +.+|+|.+.... .+++ .++.+
T Consensus 16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (256)
T TIGR03873 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD 94 (256)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH
Confidence 3566778899999999999999999999999999874 557877653210 0111 12223
Q ss_pred HHHHHh-------ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 199 RVAEEF-------GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 199 ~v~~~~-------~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
++.... +.. ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP---------- 164 (256)
T TIGR03873 95 VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEP---------- 164 (256)
T ss_pred HHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCc----------
Confidence 222110 000 0011222222222222 2456779999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccc---ccc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPN---AWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~---~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++.......... ..+ -.+||++||..+....++|.+++++.|++..
T Consensus 165 -----------t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (256)
T TIGR03873 165 -----------TNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA 217 (256)
T ss_pred -----------cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE
Confidence 333333322211110 000 1469999999999999999999999999854
No 214
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3e-20 Score=170.73 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=107.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCCc------------chhh---------h
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQPR------------RVAA---------M 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~~------------~i~~---------~ 194 (350)
+.+++..++++|++++|+|+|||||||++++++|...+ +.+|++.+.... .+++ .
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (249)
T PRK14253 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPM 97 (249)
T ss_pred eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcc
Confidence 35667788999999999999999999999999998753 246877553210 0111 1
Q ss_pred hHHHHHHHHh---cccc----cchhhhhhhcccC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 195 SVAKRVAEEF---GCRL----GQEVGYTIRFEDC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 195 ~~~~~v~~~~---~~~~----~~~v~~~~~~~~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
++.+++.... +... ...+...+...+. ...+..+..||+||+||++||++++.+|+++|||||
T Consensus 98 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP----- 172 (249)
T PRK14253 98 SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEP----- 172 (249)
T ss_pred cHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC-----
Confidence 2222222111 0000 0011111111111 112356678999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++......... ...+-++||++||..+....++|.+++++.|++.+
T Consensus 173 ----------------~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~ 224 (249)
T PRK14253 173 ----------------TSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE 224 (249)
T ss_pred ----------------CccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 33333332221111 00011469999999999999999999999999864
No 215
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.81 E-value=2.1e-20 Score=172.29 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=108.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC---CCCcEEEEcCC---------cchhhhhH------------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF---TARGKIGCTQP---------RRVAAMSV------------ 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~---~~~G~i~~~~~---------~~i~~~~~------------ 196 (350)
.+++...+.+|++++|+|+|||||||++++++|...+ +.+|+|.+... +.+++++.
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~ 98 (254)
T PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTM 98 (254)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccH
Confidence 5567778999999999999999999999999999754 15787765310 11221111
Q ss_pred HHHHHH---Hhcccc-cchhhhhhhcccCCC----ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 197 AKRVAE---EFGCRL-GQEVGYTIRFEDCTS----SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 197 ~~~v~~---~~~~~~-~~~v~~~~~~~~~~~----~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
...+.. .++... .+.+...++..+... .++.+..||+||+||++||++++.+|++||||||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEP----------- 167 (254)
T PRK10418 99 HTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEP----------- 167 (254)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCC-----------
Confidence 111111 111110 012222233333322 2466789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++......... ..++ -.+||++||..+....++|.+++++.|++..
T Consensus 168 ----------t~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 168 ----------TTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221 (254)
T ss_pred ----------CcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 33333332211111 0001 1469999999999999999999999999854
No 216
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.81 E-value=2.3e-20 Score=170.29 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=109.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cchhh----------hhHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRVAA----------MSVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i~~----------~~~~~~v 200 (350)
+.+++..++.+|++++|+|+|||||||+++.++|... +.+|+|.+... +.+++ .+..+++
T Consensus 15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 93 (237)
T TIGR00968 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI 93 (237)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence 3556677899999999999999999999999999874 55787755310 11111 1222333
Q ss_pred HHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHH
Q psy9590 201 AEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKL 273 (350)
Q Consensus 201 ~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~ 273 (350)
.... +.. ..+.+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP---------------- 157 (237)
T TIGR00968 94 AFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEP---------------- 157 (237)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC----------------
Confidence 2111 000 0011222222222221 2456678999999999999999999999999999
Q ss_pred HhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 274 SKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++....+.....+ .. -++||++||..+....++|.+++++.|++.+
T Consensus 158 -----~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~ 211 (237)
T TIGR00968 158 -----FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ 211 (237)
T ss_pred -----cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 4444443332221111 01 1579999999999889999999999999864
No 217
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.7e-20 Score=189.42 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=110.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhhh----------hHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAAM----------SVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~~----------~~~ 197 (350)
+.+++..++++|++++|+|+||||||||+++++|... +.+|+|.+... +.++++ ++.
T Consensus 20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 98 (510)
T PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVL 98 (510)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHH
Confidence 3567788899999999999999999999999999984 55888866321 012211 222
Q ss_pred HHHHHHh-------ccc------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 198 KRVAEEF-------GCR------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 198 ~~v~~~~-------~~~------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
+++.... +.. ....+...+...+... .++.+..|||||+||++||++|+.+|++||||||
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEP------ 172 (510)
T PRK09700 99 ENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEP------ 172 (510)
T ss_pred HHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC------
Confidence 2222110 000 0011222233333322 3467889999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+. + -.+||++||+.+....++|.+++++.|++.
T Consensus 173 ---------------t~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 173 ---------------TSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred ---------------CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 44444433322211000 0 146999999999999999999999999874
No 218
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.9e-20 Score=172.87 Aligned_cols=164 Identities=18% Similarity=0.186 Sum_probs=106.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhhhh-----------HHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAAMS-----------VAK 198 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~~~-----------~~~ 198 (350)
.+++..++++|++++|+|+||||||||+++++|+.. +.+|+|.+.... .+++++ ...
T Consensus 25 l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~ 103 (269)
T PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKY 103 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHH
Confidence 456778899999999999999999999999999984 558888663210 111111 111
Q ss_pred HHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 199 RVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 199 ~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
++.... +.. ....+...+...+... .+..+..||+||+||++||+|++.+|+++|||||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP-------------- 169 (269)
T PRK13648 104 DVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA-------------- 169 (269)
T ss_pred HHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC--------------
Confidence 111100 000 0011222222223222 2466789999999999999999999999999999
Q ss_pred HHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 272 KLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++......... ..++ -.+||++||..+.... +|.+++++.|++.+
T Consensus 170 -------t~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~ 222 (269)
T PRK13648 170 -------TSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYK 222 (269)
T ss_pred -------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE
Confidence 33443333222111 1111 1469999999998875 99999999999864
No 219
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.7e-20 Score=165.84 Aligned_cols=164 Identities=12% Similarity=0.095 Sum_probs=103.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC--CCCcEEEEcCCcchhhhhH--HHHHHHHhc---ccccchhh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF--TARGKIGCTQPRRVAAMSV--AKRVAEEFG---CRLGQEVG 213 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~--~~~G~i~~~~~~~i~~~~~--~~~v~~~~~---~~~~~~v~ 213 (350)
.+++..++++|++++|+|+|||||||++++++|...+ +.+|.|.+.. ..+..... ...++.... ......+.
T Consensus 23 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g-~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 101 (202)
T cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG-IPYKEFAEKYPGEIIYVSEEDVHFPTLTVR 101 (202)
T ss_pred eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECC-EECccchhhhcceEEEEecccccCCCCcHH
Confidence 4556678999999999999999999999999999852 5689887742 22211110 001110000 00111222
Q ss_pred hhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc
Q psy9590 214 YTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN 293 (350)
Q Consensus 214 ~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~ 293 (350)
..+.+......+..+..||+||+||++||++++.+|+++||||| +..++....+.....
T Consensus 102 ~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEP---------------------t~~LD~~~~~~~~~~ 160 (202)
T cd03233 102 ETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNS---------------------TRGLDSSTALEILKC 160 (202)
T ss_pred HHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC---------------------CccCCHHHHHHHHHH
Confidence 22221111113466788999999999999999999999999999 334443333222111
Q ss_pred c---cc--eeEEEE-EecccccccccCCEEEEEeCCeee
Q psy9590 294 A---WR--ISRVVI-ATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 294 ~---~~--~~~vi~-sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+ .+ -.++|+ ++|..+....++|.+++++.|++.
T Consensus 161 l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 161 IRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred HHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 1 01 123454 566667888899999999999874
No 220
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.8e-20 Score=169.54 Aligned_cols=165 Identities=17% Similarity=0.158 Sum_probs=109.6
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cchh----------hhhHHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRVA----------AMSVAKRVA 201 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i~----------~~~~~~~v~ 201 (350)
.+++..++.+|++++|+|+|||||||+++++.|... +.+|.+.+... +.++ ..++.+++.
T Consensus 15 l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 556777899999999999999999999999999874 55787755310 0111 123333333
Q ss_pred HHhcc---c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHH
Q psy9590 202 EEFGC---R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLS 274 (350)
Q Consensus 202 ~~~~~---~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~ 274 (350)
..... . ..+.+...+...+... .++.+..||+||+||++||++++.+|+++++|||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP----------------- 156 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP----------------- 156 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCC-----------------
Confidence 21110 0 1111222233333322 3467789999999999999999999999999999
Q ss_pred hhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 275 KFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++....+.... ..+. -++||++||..+....++|.+++++.|.+.+
T Consensus 157 ----t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 157 ----FSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred ----cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 33333332221111 0000 1469999999999888999999999999864
No 221
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.4e-20 Score=170.45 Aligned_cols=167 Identities=19% Similarity=0.209 Sum_probs=106.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC-C---CCcEEEEcCCc-------------chhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF-T---ARGKIGCTQPR-------------RVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~-~---~~G~i~~~~~~-------------~i~~--------- 193 (350)
+.+++..++++|++++|+|+|||||||++++++|.... + .+|+|.+.... .+++
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14240 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP 97 (250)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc
Confidence 35677888999999999999999999999999997532 2 47877653210 0111
Q ss_pred hhHHHHHHHHh---ccc----ccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 194 MSVAKRVAEEF---GCR----LGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 194 ~~~~~~v~~~~---~~~----~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.+..+++.... +.. ..+.+...+...+.. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 98 ~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP---- 173 (250)
T PRK14240 98 MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEP---- 173 (250)
T ss_pred ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC----
Confidence 12222222110 100 001111111111111 12356778999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++......... ...+-++||++||..+....++|.+++++.|++..
T Consensus 174 -----------------~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 174 -----------------TSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred -----------------CccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 33333222211110 00001469999999999999999999999999864
No 222
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=1.6e-20 Score=170.20 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHH---HHHHHHhcccccchhhh
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVA---KRVAEEFGCRLGQEVGY 214 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~---~~v~~~~~~~~~~~v~~ 214 (350)
..+.+++.++|.+|++++|+|++||||||+-+.++++.. +++|+|.+. +..+..++.. +++...+ +.|+.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-pt~G~i~f~-g~~i~~~~~~~~~~~v~elL-----~~Vgl 98 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-PTSGEILFE-GKDITKLSKEERRERVLELL-----EKVGL 98 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-CCCceEEEc-CcchhhcchhHHHHHHHHHH-----HHhCC
Confidence 345788999999999999999999999999999999984 569999984 4444333311 1222211 22332
Q ss_pred hhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc--
Q psy9590 215 TIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP-- 292 (350)
Q Consensus 215 ~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~-- 292 (350)
.-.+. .+...++||||+||+.|||||+.+|+++|+||| ..-+++-.......
T Consensus 99 ~~~~~-----~ryPhelSGGQrQRi~IARALal~P~liV~DEp---------------------vSaLDvSiqaqIlnLL 152 (268)
T COG4608 99 PEEFL-----YRYPHELSGGQRQRIGIARALALNPKLIVADEP---------------------VSALDVSVQAQILNLL 152 (268)
T ss_pred CHHHh-----hcCCcccCchhhhhHHHHHHHhhCCcEEEecCc---------------------hhhcchhHHHHHHHHH
Confidence 22222 234456999999999999999999999999999 11111111000000
Q ss_pred -cccc--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 293 -NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 293 -~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
...+ --+.++.||++...-.++|.+.|+.-|++.+.
T Consensus 153 ~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~ 191 (268)
T COG4608 153 KDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEI 191 (268)
T ss_pred HHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEe
Confidence 0000 02489999999999999999999999999765
No 223
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.6e-20 Score=174.35 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=108.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCC--CcEEEEcCC-----------cchhh-----------hh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTA--RGKIGCTQP-----------RRVAA-----------MS 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~--~G~i~~~~~-----------~~i~~-----------~~ 195 (350)
+.+++..++.+|++++|+|+|||||||++++++|+..+.. +|+|.+... +.+++ .+
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 101 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGAT 101 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCC
Confidence 3556677899999999999999999999999999985443 278765321 01111 11
Q ss_pred HHHHHHHH---hccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEE---FGCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~---~~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.+++... .+.. ..+.+...+...+... .++.+..||+||+||++||+|++.+|++||||||
T Consensus 102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEP----------- 170 (282)
T PRK13640 102 VGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDES----------- 170 (282)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC-----------
Confidence 22222211 0000 0011222233333322 2466789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++.......... ..+ -.+||++||..+.. ..+|.+++++.|++..
T Consensus 171 ----------t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~~G~i~~ 223 (282)
T PRK13640 171 ----------TSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLA 223 (282)
T ss_pred ----------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEE
Confidence 344443332221110 000 14699999999987 5799999999999864
No 224
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.9e-20 Score=170.17 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=107.7
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCCc-------------chhh---------h
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQPR-------------RVAA---------M 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~~-------------~i~~---------~ 194 (350)
.+++..++.+|++++|+|+||||||||+++++|...+ +.+|+|.+.... .+++ .
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (251)
T PRK14270 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPM 99 (251)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCC
Confidence 4667788999999999999999999999999998643 257887663210 0111 1
Q ss_pred hHHHHHHHH---hcccc----cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 195 SVAKRVAEE---FGCRL----GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 195 ~~~~~v~~~---~~~~~----~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
+..+++... .+... ...+...+...+.. ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP----- 174 (251)
T PRK14270 100 SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP----- 174 (251)
T ss_pred cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC-----
Confidence 222333211 11000 01111122222211 12356789999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. +-++||++||..+....++|.+++++.|.+..
T Consensus 175 ----------------~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 175 ----------------TSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred ----------------cccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 33333322211111000 01469999999999889999999999999853
No 225
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.81 E-value=2.2e-20 Score=187.80 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=109.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--chhhhhHHHHHHHHh-------------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--RVAAMSVAKRVAEEF------------- 204 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--~i~~~~~~~~v~~~~------------- 204 (350)
+.+++..++++|++++|+|+||||||||+++++|... +.+|.|.+.... ..........++..+
T Consensus 18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 96 (490)
T PRK10938 18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGED 96 (490)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchh
Confidence 4667888999999999999999999999999999884 558888763211 000000011111100
Q ss_pred --cccc----------cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 205 --GCRL----------GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 205 --~~~~----------~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
+... ...+...+...+... .++.+..|||||+||++||++++.+|+++|||||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP-------------- 162 (490)
T PRK10938 97 DTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEP-------------- 162 (490)
T ss_pred hccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC--------------
Confidence 0000 011222222233322 2467889999999999999999999999999999
Q ss_pred HHHhhhhcCcccceeccCCcccccc----eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 272 KLSKFKKNQRLEPLYNKYEEPNAWR----ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~~~~~~----~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+.+ -.+||++||+.+....++|.+++++.|++.
T Consensus 163 -------t~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 214 (490)
T PRK10938 163 -------FDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA 214 (490)
T ss_pred -------cccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 334443333222111100 146999999999999999999999999874
No 226
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.81 E-value=3.3e-20 Score=190.43 Aligned_cols=198 Identities=20% Similarity=0.253 Sum_probs=132.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc-----C---------CCCCcEEEEcCCcchhhhhHHHHHHHHhc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEA-----G---------FTARGKIGCTQPRRVAAMSVAKRVAEEFG 205 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~-----~---------~~~~G~i~~~~~~~i~~~~~~~~v~~~~~ 205 (350)
++.+++..+.+|+.+.+.|+|||||||++|+++.+. . ....+.+.+.+|++..+......+....+
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 566899999999999999999999999999887542 1 11246899999997776666666655443
Q ss_pred ccccchhhhhhhcccCCCc--ccc-----ccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh-------
Q psy9590 206 CRLGQEVGYTIRFEDCTSS--ETL-----IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT------- 271 (350)
Q Consensus 206 ~~~~~~v~~~~~~~~~~~~--~~~-----i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l------- 271 (350)
......+...+++.+.... ++. +...+.| +....+.+.+++|+||+|||+..+|++++++
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~------L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~ 321 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHK------LTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKI 321 (675)
T ss_pred ccccCCceEEEEECCcchHHhhcccCCCCEEEEeCc------ccccccccCCEEEccccccCccchhHHHHHHHHhhhhc
Confidence 3111111112233333211 111 1111222 1224578999999999999999999987665
Q ss_pred ---------------HHHhhhh-----------cCcccceeccCCc-----------------------------c----
Q psy9590 272 ---------------KLSKFKK-----------NQRLEPLYNKYEE-----------------------------P---- 292 (350)
Q Consensus 272 ---------------~~~~~~~-----------~~~v~~~~~~~~~-----------------------------~---- 292 (350)
+|.+||+ .+|++.+|.+... .
T Consensus 322 rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVF 401 (675)
T PHA02653 322 RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVF 401 (675)
T ss_pred CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEE
Confidence 4556665 3777766642210 0
Q ss_pred ---------------cc---c----------------------ceeEEEEEecccccccccCCEEEEEeCCeeeeEeeec
Q psy9590 293 ---------------NA---W----------------------RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNS 332 (350)
Q Consensus 293 ---------------~~---~----------------------~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~ 332 (350)
.. . +-++||+|||+||+++||+|+.+|||+|+++.+. +
T Consensus 402 lpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~ 479 (675)
T PHA02653 402 VASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--P 479 (675)
T ss_pred ECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--c
Confidence 00 0 1179999999999999999999999999987663 4
Q ss_pred CCCcceeeEeecccCCC
Q psy9590 333 KTGMDSLVVTPISQDGH 349 (350)
Q Consensus 333 ~~~~~~l~~~~is~~~a 349 (350)
..++ ..|||+|+|
T Consensus 480 ~~g~----~~~iSkasa 492 (675)
T PHA02653 480 FGGK----EMFISKSMR 492 (675)
T ss_pred ccCc----ccccCHHHH
Confidence 4554 459999876
No 227
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.5e-20 Score=174.23 Aligned_cols=165 Identities=18% Similarity=0.197 Sum_probs=108.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------------chhhhh-----------H
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------------RVAAMS-----------V 196 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------------~i~~~~-----------~ 196 (350)
+.+++..++.+|++++|+|+|||||||+++++.|... +.+|.|.+.... .+++.+ +
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 103 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV 103 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence 4566778899999999999999999999999999984 568888664210 011111 1
Q ss_pred HHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 197 AKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 197 ~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.+.+.... +.. ....+...++..+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP------------ 171 (280)
T PRK13633 104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEP------------ 171 (280)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC------------
Confidence 11111100 000 0011222233333322 2467789999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++......... .++ -.+||++||+.+.... +|.+++++.|.+..
T Consensus 172 ---------t~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~ 224 (280)
T PRK13633 172 ---------TAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVM 224 (280)
T ss_pred ---------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEE
Confidence 334443332222110 101 1469999999999865 99999999998753
No 228
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.81 E-value=3.1e-20 Score=191.55 Aligned_cols=167 Identities=19% Similarity=0.196 Sum_probs=111.5
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchh---------------------hhhHH
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVA---------------------AMSVA 197 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~---------------------~~~~~ 197 (350)
...+++...+++||.++|+|+|||||||++|.++|++ .+..|+|.+. ...+. .-++.
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~~G~I~~d-g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~ 564 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQGRILLD-GVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEEC-CEeHHhcCHHHHHhheeEEcccchhhcCcHH
Confidence 4577888999999999999999999999999999998 4568999774 21111 11222
Q ss_pred HHHHHHhcccccchhhhhhh-------cccCC-Cccc----cccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 198 KRVAEEFGCRLGQEVGYTIR-------FEDCT-SSET----LIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 198 ~~v~~~~~~~~~~~v~~~~~-------~~~~~-~~~~----~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
++++........+++-.... ....+ ..++ .-..||||||||++||||++++|+++|||||
T Consensus 565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEa-------- 636 (709)
T COG2274 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEA-------- 636 (709)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCc--------
Confidence 33321111111111111111 00111 1112 2247999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeeeEe
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKV 329 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~ 329 (350)
+-.+|..-.+...+++. +-+++|+.||-..+. .-+|+++|+|.|++.+.-
T Consensus 637 -------------TSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti-~~adrIiVl~~Gkiv~~g 689 (709)
T COG2274 637 -------------TSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI-RSADRIIVLDQGKIVEQG 689 (709)
T ss_pred -------------ccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh-hhccEEEEccCCceeccC
Confidence 55555544433332222 227899999999876 678999999999997653
No 229
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.3e-20 Score=172.32 Aligned_cols=167 Identities=15% Similarity=0.186 Sum_probs=107.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCCc-------------chhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQPR-------------RVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~~-------------~i~~--------- 193 (350)
+.+++..++.+|++++|+|+||||||||++++.|...+ +.+|+|.+.... .+++
T Consensus 35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 114 (267)
T PRK14237 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA 114 (267)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc
Confidence 34567778999999999999999999999999998743 357877553210 0111
Q ss_pred hhHHHHHHHHh---ccccc----chhhhhhhcccC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 194 MSVAKRVAEEF---GCRLG----QEVGYTIRFEDC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 194 ~~~~~~v~~~~---~~~~~----~~v~~~~~~~~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.++.+++.... +.... ..+...+...+. ...+..+..||+||+||++||++++.+|+++|||||
T Consensus 115 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP---- 190 (267)
T PRK14237 115 KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEP---- 190 (267)
T ss_pred ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC----
Confidence 12223332211 10000 011111111111 112356778999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. .-.+||++||..+....++|.+++++.|++.+
T Consensus 191 -----------------t~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 242 (267)
T PRK14237 191 -----------------ASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242 (267)
T ss_pred -----------------cccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE
Confidence 33333222111110000 01469999999999989999999999999854
No 230
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.81 E-value=3.1e-20 Score=189.36 Aligned_cols=165 Identities=17% Similarity=0.166 Sum_probs=109.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcc----------hhhhhHHHHHHHHh-----
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRR----------VAAMSVAKRVAEEF----- 204 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~----------i~~~~~~~~v~~~~----- 204 (350)
+.+++..++.+|++++|+|+|||||||++++++|... +.+|.|.+..... ....++.+++....
T Consensus 22 il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~ 100 (556)
T PRK11819 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKA 100 (556)
T ss_pred eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHH
Confidence 3567788999999999999999999999999999974 5578875431111 11223333332110
Q ss_pred ------------ccc-------------------------ccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCC
Q psy9590 205 ------------GCR-------------------------LGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLN 247 (350)
Q Consensus 205 ------------~~~-------------------------~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~ 247 (350)
... ....+...+...+....++++..|||||+||++||++++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~ 180 (556)
T PRK11819 101 ALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLE 180 (556)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhC
Confidence 000 0011122222222322357788999999999999999999
Q ss_pred CCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 248 NYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 248 ~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+|++|||||| +..+++.........+.. -.+||++||+.+....++|.+++++.|.+.
T Consensus 181 ~p~vlLLDEP---------------------t~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 181 KPDMLLLDEP---------------------TNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred CCCEEEEcCC---------------------CCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 9999999999 223332222111100000 036999999999999999999999999874
No 231
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.7e-20 Score=191.96 Aligned_cols=166 Identities=18% Similarity=0.139 Sum_probs=113.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------------cchhhh-----------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------------RRVAAM----------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------------~~i~~~----------- 194 (350)
+.+++..++.+|++++|+|+||||||||+++++|+.. +.+|+|.+... +.++++
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 4678899999999999999999999999999999984 55888866321 011111
Q ss_pred -hHHHHHHHHh---ccc----ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 195 -SVAKRVAEEF---GCR----LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 195 -~~~~~v~~~~---~~~----~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
++.+.+...+ +.. ....+...+...+.. ..++.+..|||||+||++||+||+.+|++||+|||
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEP------- 490 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEA------- 490 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC-------
Confidence 1222332211 110 001222333333442 13467889999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ ++ -.+||++||+.+....++|.++|++.|++.+
T Consensus 491 --------------ts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~ 544 (623)
T PRK10261 491 --------------VSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544 (623)
T ss_pred --------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 4444444332221111 00 1469999999999999999999999999864
No 232
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.81 E-value=2.8e-20 Score=187.43 Aligned_cols=166 Identities=13% Similarity=0.037 Sum_probs=111.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC-CCCcEEEEcCC------------cchhhh----------hH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF-TARGKIGCTQP------------RRVAAM----------SV 196 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~-~~~G~i~~~~~------------~~i~~~----------~~ 196 (350)
+.+++..++++|++++|+|+||||||||+++++|...+ +.+|.|.+... ..++++ ++
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 95 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSV 95 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcH
Confidence 35678889999999999999999999999999998754 25888866320 112221 22
Q ss_pred HHHHHHHhcc-------c---ccchhhhhhhcccCCCc--cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 197 AKRVAEEFGC-------R---LGQEVGYTIRFEDCTSS--ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 197 ~~~v~~~~~~-------~---~~~~v~~~~~~~~~~~~--~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
.+++...... . ....+...+...+.... ++.+..|||||+||++||++|+.+|++||||||
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEP------- 168 (500)
T TIGR02633 96 AENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEP------- 168 (500)
T ss_pred HHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCC-------
Confidence 2333221100 0 00112222333333222 356889999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+. + -.+||++||+.+....++|.+++++.|++.
T Consensus 169 --------------t~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 169 --------------SSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220 (500)
T ss_pred --------------CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe
Confidence 44444433322211110 0 146999999999999999999999999874
No 233
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.6e-20 Score=171.75 Aligned_cols=166 Identities=18% Similarity=0.194 Sum_probs=107.3
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCC-------------cchhhh---------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQP-------------RRVAAM--------- 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~-------------~~i~~~--------- 194 (350)
.+++...+++|++++|+|+|||||||++++++|.... +.+|+|.+... +.++++
T Consensus 41 l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~ 120 (272)
T PRK14236 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK 120 (272)
T ss_pred eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc
Confidence 4556678889999999999999999999999998753 35787765310 011111
Q ss_pred hHHHHHHHHh---cccc----cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 195 SVAKRVAEEF---GCRL----GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 195 ~~~~~v~~~~---~~~~----~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
++.+++.... +... ...+...+...+.. ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 121 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP----- 195 (272)
T PRK14236 121 SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEP----- 195 (272)
T ss_pred cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCC-----
Confidence 2223332211 1000 01122222222221 12356778999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.......... .+-.+||++||..+....++|.+++++.|++..
T Consensus 196 ----------------t~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 247 (272)
T PRK14236 196 ----------------TSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE 247 (272)
T ss_pred ----------------cccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe
Confidence 3333333222111100 001469999999999999999999999999854
No 234
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.7e-20 Score=187.66 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=113.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhh-------------h
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAA-------------M 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~-------------~ 194 (350)
+.+++..++++|++++|+|+||||||||+++++|... +.+|.|.+... ..+++ .
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 5678889999999999999999999999999999984 55888876321 01111 1
Q ss_pred hHHHHHHHHhcc---------c---ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 195 SVAKRVAEEFGC---------R---LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 195 ~~~~~v~~~~~~---------~---~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
+..+.+...... . ..+.+...+...+.. ..++.+..|||||+||++||++++.+|++||||||
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEP--- 423 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP--- 423 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCC---
Confidence 122222210000 0 001122223333331 23577889999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..++..........+ ++ -.+||++||+.+....++|.+++++.|.+.
T Consensus 424 ------------------t~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~ 475 (501)
T PRK11288 424 ------------------TRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475 (501)
T ss_pred ------------------CCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEE
Confidence 4555554433322111 11 146999999999999999999999999875
No 235
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.81 E-value=2.7e-20 Score=187.59 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=113.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhhh-------------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAAM------------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~~------------- 194 (350)
+.+++..++.+|++++|+|+||||||||+++++|...++.+|.|.+... +.++++
T Consensus 275 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 354 (500)
T TIGR02633 275 RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPIL 354 (500)
T ss_pred ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCC
Confidence 5677888999999999999999999999999999985445888876321 012211
Q ss_pred hHHHHHHHH----hcc----c---ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 195 SVAKRVAEE----FGC----R---LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 195 ~~~~~v~~~----~~~----~---~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
++.+++... ... . ....+...+...+.. ..++.+..|||||+||++||++++.+|++||||||
T Consensus 355 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP---- 430 (500)
T TIGR02633 355 GVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEP---- 430 (500)
T ss_pred CHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCC----
Confidence 122222110 000 0 001122233333332 23577889999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcc---cccc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++........ ..++ -.+||++||+.+....+||.+++++.|++.
T Consensus 431 -----------------t~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 431 -----------------TRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred -----------------CCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 44444443332211 0000 146999999999999999999999999875
No 236
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.8e-20 Score=187.92 Aligned_cols=165 Identities=15% Similarity=0.097 Sum_probs=112.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhhh-------------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAAM------------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~~------------- 194 (350)
+.+++..++++|++++|+|+||||||||+++++|... +.+|+|.+... +.++++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 5678888999999999999999999999999999884 45888876321 012221
Q ss_pred hHHHHHHHHhcc------------c---ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 195 SVAKRVAEEFGC------------R---LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 195 ~~~~~v~~~~~~------------~---~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
++.+++...... . ....+...+...+.. ..++.+..|||||+||++||++++.+|++||||||
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence 122222211000 0 000122223333332 23577889999999999999999999999999999
Q ss_pred CccccccccccChhHHHhhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 258 HERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 258 her~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+. + -.+||++||+.+....+||.+++++.|++.
T Consensus 437 ---------------------t~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 437 ---------------------TRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred ---------------------CCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 44444443322211110 0 146999999999999999999999999875
No 237
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.4e-20 Score=172.41 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC----CCcEEEEcCCcchhhhhHH-----------------
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT----ARGKIGCTQPRRVAAMSVA----------------- 197 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~----~~G~i~~~~~~~i~~~~~~----------------- 197 (350)
.+.+++..++++||+++|+|++||||||+...++++.+.+ .+|+|.+. ...+..++..
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~-g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFD-GKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEEC-CcccccCCHHHHHhhcCceEEEEEcCc
Confidence 4577889999999999999999999999999999988522 36777663 2222222211
Q ss_pred -----------HHHHHHhcc---c-----ccchhhhhhhcccCCCcc----ccccccChhHHHHHHHHhhcCCCCcEEEE
Q psy9590 198 -----------KRVAEEFGC---R-----LGQEVGYTIRFEDCTSSE----TLIKYMTDGMLLRECLVDLDLNNYSVIML 254 (350)
Q Consensus 198 -----------~~v~~~~~~---~-----~~~~v~~~~~~~~~~~~~----~~i~~lS~G~~qr~~ia~all~~~~viIl 254 (350)
..+.+.... . ..+.+...+...+....+ .-..+|||||+||++||.|++.+|++||.
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA 177 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence 111110000 0 001122222223333221 23448999999999999999999999999
Q ss_pred cCCCccccccccccChhHHHhhhhcCcccceeccCCccc---cc--ceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 255 DEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AW--RISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 255 DEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~--~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
||| +..+|+........- +. .-..+|+-||++.-...+||.++|+-.|++.|.
T Consensus 178 DEP---------------------TTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~ 235 (316)
T COG0444 178 DEP---------------------TTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE 235 (316)
T ss_pred CCC---------------------cchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe
Confidence 999 545544432221110 00 014699999999999999999999999999765
No 238
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.4e-20 Score=186.48 Aligned_cols=166 Identities=13% Similarity=0.062 Sum_probs=110.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhhh----------hHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAAM----------SVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~~----------~~~ 197 (350)
+.+++..++++|++++|+|+||||||||+++++|+.. +.+|.|.+... +.++++ ++.
T Consensus 13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (491)
T PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVM 91 (491)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHH
Confidence 3567788899999999999999999999999999874 55888866321 112111 222
Q ss_pred HHHHHHh----cc--cc---cchhhhhhhcccCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 198 KRVAEEF----GC--RL---GQEVGYTIRFEDCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 198 ~~v~~~~----~~--~~---~~~v~~~~~~~~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+++.... +. .. .+.+...+...+.. ..++.+..|||||+||++||++++.+|++||||||
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEP---------- 161 (491)
T PRK10982 92 DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEP---------- 161 (491)
T ss_pred HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCC----------
Confidence 3332110 00 00 00112222222222 23467889999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ ++ -.+||++||+.+....++|.+++++.|.+..
T Consensus 162 -----------t~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~ 214 (491)
T PRK10982 162 -----------TSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA 214 (491)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe
Confidence 3344433322221100 00 1469999999999999999999999998753
No 239
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.81 E-value=3.2e-20 Score=187.89 Aligned_cols=165 Identities=15% Similarity=0.228 Sum_probs=112.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc-C-C----------------cchhhh-------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT-Q-P----------------RRVAAM------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~-~-~----------------~~i~~~------- 194 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+. . . +.++++
T Consensus 299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 377 (520)
T TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY 377 (520)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence 4567888999999999999999999999999999984 558888762 1 0 012211
Q ss_pred ---hHHHHHHHHhcc--c---ccchhhhhhhcccCCC------ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 195 ---SVAKRVAEEFGC--R---LGQEVGYTIRFEDCTS------SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 195 ---~~~~~v~~~~~~--~---~~~~v~~~~~~~~~~~------~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
++.+.+...++. . ....+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 378 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEP--- 454 (520)
T TIGR03269 378 PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEP--- 454 (520)
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC---
Confidence 122333221110 0 0011222233333322 2477889999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+ .+ -.+||++||+.+....++|.+++++.|++.
T Consensus 455 ------------------t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 455 ------------------TGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred ------------------cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 4444444333222111 00 146999999999999999999999999874
No 240
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.6e-20 Score=170.49 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=106.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC-C---CCcEEEEcCCc-------------chhhh--------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF-T---ARGKIGCTQPR-------------RVAAM-------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~-~---~~G~i~~~~~~-------------~i~~~-------- 194 (350)
+.+++..++++|++++|+|+||||||||+++++|...+ + .+|.|.+.... .++++
T Consensus 27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 106 (259)
T PRK14274 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP 106 (259)
T ss_pred eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc
Confidence 34566778999999999999999999999999998742 2 47887653110 01111
Q ss_pred -hHHHHHHHHh---cccc----cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 195 -SVAKRVAEEF---GCRL----GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 195 -~~~~~v~~~~---~~~~----~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
++.+++.... +... ...+...+...+.. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEP---- 182 (259)
T PRK14274 107 QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEP---- 182 (259)
T ss_pred cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC----
Confidence 1222222110 1000 00111112222221 12456778999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+ ..-++||++||..+....++|.+++++.|++..
T Consensus 183 -----------------t~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 183 -----------------TSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred -----------------cccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 3333333222111100 001469999999999999999999999999864
No 241
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.9e-20 Score=173.48 Aligned_cols=165 Identities=15% Similarity=0.154 Sum_probs=105.4
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC--C--CCCcEEEEcCCc-------------chhhh---------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG--F--TARGKIGCTQPR-------------RVAAM--------- 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~--~--~~~G~i~~~~~~-------------~i~~~--------- 194 (350)
.+++...+.+|++++|+|+||||||||++++.|+.. + +.+|+|.+.... .++++
T Consensus 55 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~ 134 (286)
T PRK14275 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK 134 (286)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc
Confidence 345667888999999999999999999999999753 2 357887663210 11111
Q ss_pred hHHHHHHHHh---cccc----cchhhhhhhcccC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 195 SVAKRVAEEF---GCRL----GQEVGYTIRFEDC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 195 ~~~~~v~~~~---~~~~----~~~v~~~~~~~~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
++.+++.... +... .+.+...+...+. ...++.+..||+||+||++||++++.+|++||||||
T Consensus 135 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEP----- 209 (286)
T PRK14275 135 SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEP----- 209 (286)
T ss_pred CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC-----
Confidence 2222232111 1000 0111111211111 112456789999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+. +-.+||++||..+....++|.+++++.|++.
T Consensus 210 ----------------t~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~ 260 (286)
T PRK14275 210 ----------------TSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLV 260 (286)
T ss_pred ----------------CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 33333322211111000 0136999999999999999999999999885
No 242
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.5e-20 Score=176.80 Aligned_cols=167 Identities=18% Similarity=0.239 Sum_probs=108.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCC-------------cchh---------h
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQP-------------RRVA---------A 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~-------------~~i~---------~ 193 (350)
..+++..+|.+|++++|+|+|||||||++++++++... +.+|.|.+... +.++ .
T Consensus 97 ~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~ 176 (329)
T PRK14257 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE 176 (329)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC
Confidence 35667788999999999999999999999999998743 34787654210 0111 1
Q ss_pred hhHHHHHHHH--hc-ccccc----hhhhhhhcccC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 194 MSVAKRVAEE--FG-CRLGQ----EVGYTIRFEDC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 194 ~~~~~~v~~~--~~-~~~~~----~v~~~~~~~~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.++.+++... +. ....+ .+...+..... .........||+||+||++||||++.+|++||||||
T Consensus 177 ~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEP---- 252 (329)
T PRK14257 177 MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEP---- 252 (329)
T ss_pred CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCC----
Confidence 2333444321 10 00000 01111111111 112356778999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+. +-.+||++||..++...++|+++|++.|++.+
T Consensus 253 -----------------ts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e 304 (329)
T PRK14257 253 -----------------TSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE 304 (329)
T ss_pred -----------------cccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 33333332221111000 11479999999999999999999999999865
No 243
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.81 E-value=4.4e-20 Score=167.11 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=102.9
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~~---------~~~~~ 199 (350)
+.+++..++++|++++|+|+|||||||++++++|.. .+.+|+|.+.... .++++ ++.++
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~n 107 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY-QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDN 107 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHH
Confidence 466778889999999999999999999999999997 4558888664210 11111 11111
Q ss_pred HHHHhcccccch---------hhhhhhcc--cCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQE---------VGYTIRFE--DCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~---------v~~~~~~~--~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+........... +...+... +.. ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP---------- 177 (226)
T cd03248 108 IAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEA---------- 177 (226)
T ss_pred hccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCC----------
Confidence 110000000000 00111111 111 12455789999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
+..+++...+..... ..+-.+||++||+.+... .+|.+++++.|.+
T Consensus 178 -----------t~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 178 -----------TSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred -----------cccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 333333222211110 000146999999999885 5999999999853
No 244
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=3.1e-20 Score=161.60 Aligned_cols=142 Identities=17% Similarity=0.134 Sum_probs=95.3
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------cchhhhhHHHHHHHHhcccccchhhh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------RRVAAMSVAKRVAEEFGCRLGQEVGY 214 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------~~i~~~~~~~~v~~~~~~~~~~~v~~ 214 (350)
.+++..++.+|++++|+|||||||||+++++++ .+|.+.+... ..+.+... . .
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~~~~~~~~~~q---------------~-~ 69 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKFSRNKLIFIDQ---------------L-Q 69 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccccccccEEEEhH---------------H-H
Confidence 456778899999999999999999999998753 2566654311 01222211 0 0
Q ss_pred hhhcccCC--CccccccccChhHHHHHHHHhhcCCC--CcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCC
Q psy9590 215 TIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNN--YSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYE 290 (350)
Q Consensus 215 ~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~--~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~ 290 (350)
.+...+.. ..+.++..||+||+||+++|++++.+ |+++|+||| ...++....+..
T Consensus 70 ~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEP---------------------t~~LD~~~~~~l 128 (176)
T cd03238 70 FLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEP---------------------STGLHQQDINQL 128 (176)
T ss_pred HHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCC---------------------cccCCHHHHHHH
Confidence 11111221 13456778999999999999999999 999999999 222322222111
Q ss_pred cc---ccc-ceeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 291 EP---NAW-RISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 291 ~~---~~~-~~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
.. ..+ .-++||++||..+.. ..+|.+++++.|..
T Consensus 129 ~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 129 LEVIKGLIDLGNTVILIEHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence 10 000 014699999999985 78999999988765
No 245
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=3.8e-20 Score=165.05 Aligned_cols=158 Identities=12% Similarity=0.052 Sum_probs=101.7
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc----------chh----------hhhHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR----------RVA----------AMSVAKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~----------~i~----------~~~~~~~v 200 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .+. ..++.+++
T Consensus 17 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l 95 (204)
T PRK13538 17 FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENL 95 (204)
T ss_pred EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHH
Confidence 566788899999999999999999999999999874 558888663210 010 11222333
Q ss_pred HHHhcc---cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhh
Q psy9590 201 AEEFGC---RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKF 276 (350)
Q Consensus 201 ~~~~~~---~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~ 276 (350)
...... .....+...++..+... .++.+..||+||+||++||++++.+|+++|+|||
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP------------------- 156 (204)
T PRK13538 96 RFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP------------------- 156 (204)
T ss_pred HHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC-------------------
Confidence 221110 11112222233323222 2466789999999999999999999999999999
Q ss_pred hhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEE
Q psy9590 277 KKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVV 320 (350)
Q Consensus 277 ~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vi 320 (350)
+..++..........+. + -.+||++||+.+..-..+++++++
T Consensus 157 --t~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 157 --FTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred --CccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 33333332222111000 0 146999999999887777777665
No 246
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.7e-20 Score=192.32 Aligned_cols=165 Identities=15% Similarity=0.162 Sum_probs=111.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhH------------HHHHHHHhccc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSV------------AKRVAEEFGCR 207 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~------------~~~v~~~~~~~ 207 (350)
+.+++...+.+|++++|+||||||||||+++++|.. .+.+|.|.+.....+++++. ...+.......
T Consensus 327 il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~ 405 (638)
T PRK10636 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQE 405 (638)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchh
Confidence 557788899999999999999999999999999988 45588886632222222221 11111100001
Q ss_pred ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccce
Q psy9590 208 LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPL 285 (350)
Q Consensus 208 ~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~ 285 (350)
....+...+...+... .++.+..|||||+||++||++++.+|++|||||| +..+++.
T Consensus 406 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEP---------------------t~~LD~~ 464 (638)
T PRK10636 406 LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP---------------------TNHLDLD 464 (638)
T ss_pred hHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC---------------------CCCCCHH
Confidence 1112223333333322 3477889999999999999999999999999999 3334333
Q ss_pred eccCCcccccce-eEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 286 YNKYEEPNAWRI-SRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 286 ~~~~~~~~~~~~-~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
........+... .+||++||+.+....+||.+++++.|.+.
T Consensus 465 ~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 465 MRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 322211100000 25999999999999999999999999875
No 247
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.80 E-value=5.1e-20 Score=171.11 Aligned_cols=165 Identities=15% Similarity=0.171 Sum_probs=108.0
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------------chhhh------------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------------RVAAM------------ 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------------~i~~~------------ 194 (350)
.+++...+.+|++++|+|+||||||||+++++|... +.+|+|.+.... .+++.
T Consensus 28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 106 (268)
T PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRK 106 (268)
T ss_pred EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCC
Confidence 456778899999999999999999999999999874 568888663210 01111
Q ss_pred hHHHHHHHHh----ccc---ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 195 SVAKRVAEEF----GCR---LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 195 ~~~~~v~~~~----~~~---~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
+..+.+.... +.. ....+...+...+.. ..++.+..||+||+||++||++++.+|++||||||
T Consensus 107 t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEP-------- 178 (268)
T PRK10419 107 TVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEA-------- 178 (268)
T ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCC--------
Confidence 1111111100 000 001122223333332 12467778999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++....+.... ..++ -.+||++||..+....++|.+++++.|++.+
T Consensus 179 -------------t~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 179 -------------VSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred -------------CcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 33444332211111 0111 1469999999999999999999999998853
No 248
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=4e-20 Score=166.79 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=102.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~~---------~~~~~ 199 (350)
..+++..++++|++++|+|+|||||||++++++|.. .+.+|+|.+.... .+++. ++.++
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en 97 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-ELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSN 97 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHH
Confidence 466778899999999999999999999999999987 4558888663210 01111 11111
Q ss_pred HHHHhcccccchhhhhhhcccC------------CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRFEDC------------TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~~~~------------~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+... .......+...+...+. ......+..||+||+||++||++++.+|+++|||||
T Consensus 98 l~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP---------- 166 (221)
T cd03244 98 LDPF-GEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEA---------- 166 (221)
T ss_pred hCcC-CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc----------
Confidence 1100 00000001100110000 001245678999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++...+.....+ ..-.+||++||..+.... +|.+++++.|.+.
T Consensus 167 -----------~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~ 216 (221)
T cd03244 167 -----------TASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVV 216 (221)
T ss_pred -----------cccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEE
Confidence 3333322211110000 001469999999998754 9999999999874
No 249
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=5.8e-20 Score=165.15 Aligned_cols=161 Identities=20% Similarity=0.177 Sum_probs=105.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------cchhh----------hhHHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------RRVAA----------MSVAKRVA 201 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------~~i~~----------~~~~~~v~ 201 (350)
+.+++...+++|++++|+|+|||||||+++++.|... +.+|+|.+... +.+.+ .+..+++.
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 104 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLH 104 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHH
Confidence 3566778899999999999999999999999999874 45787765421 00111 12222222
Q ss_pred HHh---cccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhh
Q psy9590 202 EEF---GCRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFK 277 (350)
Q Consensus 202 ~~~---~~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~ 277 (350)
... +......+...+...+... .++.+..||+||+||+++|++++.+|+++|||||
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP-------------------- 164 (214)
T PRK13543 105 FLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP-------------------- 164 (214)
T ss_pred HHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC--------------------
Confidence 111 1111111222223333222 3567789999999999999999999999999999
Q ss_pred hcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeC
Q psy9590 278 KNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 278 ~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~ 322 (350)
+..++....+....... .-.+||++||+.+....+++.+++++.
T Consensus 165 -t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 165 -YANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred -cccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 33333322221111000 014699999999999999999999874
No 250
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.80 E-value=4.3e-20 Score=186.94 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=108.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC-CCCCcEEEEcC----------------------Cc-------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG-FTARGKIGCTQ----------------------PR------- 189 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~-~~~~G~i~~~~----------------------~~------- 189 (350)
+.+++...+++|++++|+|+||||||||+++++|... .+.+|+|.+.. ..
T Consensus 15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 94 (520)
T TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEV 94 (520)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccch
Confidence 3566788899999999999999999999999999863 35588886631 00
Q ss_pred ---------------chhh-----------hhHHHHHHHHh---cccc---cchhhhhhhcccCCC-ccccccccChhHH
Q psy9590 190 ---------------RVAA-----------MSVAKRVAEEF---GCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGML 236 (350)
Q Consensus 190 ---------------~i~~-----------~~~~~~v~~~~---~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~ 236 (350)
.+.+ .++.+.+.... +... ...+...+...+... .++.+.+|||||+
T Consensus 95 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~ 174 (520)
T TIGR03269 95 DFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEK 174 (520)
T ss_pred hhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHH
Confidence 0110 01112221110 0000 011222222222222 2356789999999
Q ss_pred HHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEeccccccc
Q psy9590 237 LRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSL 311 (350)
Q Consensus 237 qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ 311 (350)
||++||+||+.+|++|||||| +..+++........ ...+ -.+||++||+.+...
T Consensus 175 qrv~iA~al~~~p~lllLDEP---------------------t~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 175 QRVVLARQLAKEPFLFLADEP---------------------TGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred HHHHHHHHHhcCCCEEEeeCC---------------------cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 999999999999999999999 33444433322111 0100 146999999999999
Q ss_pred ccCCEEEEEeCCeee
Q psy9590 312 TIDGIFYVVDPGFVK 326 (350)
Q Consensus 312 ti~d~~~vid~G~~~ 326 (350)
.++|.+++++.|++.
T Consensus 234 ~~~d~i~~l~~G~i~ 248 (520)
T TIGR03269 234 DLSDKAIWLENGEIK 248 (520)
T ss_pred HhcCEEEEEeCCEEe
Confidence 999999999999875
No 251
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.8e-20 Score=171.43 Aligned_cols=167 Identities=19% Similarity=0.126 Sum_probs=107.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCC------------cchhh---------h
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQP------------RRVAA---------M 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~------------~~i~~---------~ 194 (350)
+.+++..++++|++++|+|+||||||||+++++|+..+ +.+|+|.+... +.+++ .
T Consensus 36 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~ 115 (276)
T PRK14271 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPM 115 (276)
T ss_pred EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCc
Confidence 45678889999999999999999999999999998753 35788766321 01111 1
Q ss_pred hHHHHHHHHh---cccccc----hhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 195 SVAKRVAEEF---GCRLGQ----EVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 195 ~~~~~v~~~~---~~~~~~----~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
++.+++.... ...... .+...+...+.. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 116 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEP----- 190 (276)
T PRK14271 116 SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEP----- 190 (276)
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC-----
Confidence 2222222111 000000 011111111221 12355778999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++......... ...+-.+||++||..+....++|.+++++.|++.+
T Consensus 191 ----------------t~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 191 ----------------TSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred ----------------cccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 33333322211111 00001469999999999999999999999998854
No 252
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.80 E-value=2.9e-20 Score=187.71 Aligned_cols=169 Identities=13% Similarity=0.093 Sum_probs=114.6
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhhhh-------------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAAMS------------- 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~~~------------- 195 (350)
.+++..++++|++++|+|+|||||||+++.++|.. .+.+|.|.+... ..+++++
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR-PARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 57788899999999999999999999999999987 455788866321 0122221
Q ss_pred HHHHHHHH----hcc--c---ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 196 VAKRVAEE----FGC--R---LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 196 ~~~~v~~~----~~~--~---~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
..+++... ... . ....+...+...+.. ..++++..|||||+||++||++++.+|++||||||
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEP------- 430 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEP------- 430 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCC-------
Confidence 12222110 000 0 001122233333332 23577889999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEeCCeeeeEeeec
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNS 332 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~ 332 (350)
+..+++.........+. + -.+||++||+.+....+||.+++++.|++.. .+++
T Consensus 431 --------------t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~-~~~~ 487 (510)
T PRK15439 431 --------------TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG-ALTG 487 (510)
T ss_pred --------------CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EEcc
Confidence 44555444332221110 0 1469999999999999999999999998863 3444
No 253
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.3e-20 Score=169.34 Aligned_cols=166 Identities=18% Similarity=0.250 Sum_probs=105.7
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCCc-------------chhhh---------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQPR-------------RVAAM--------- 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~~-------------~i~~~--------- 194 (350)
.+++..++++|++++|+|+||||||||+++++|+... +.+|+|.+.... .++++
T Consensus 26 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 105 (264)
T PRK14243 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK 105 (264)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccc
Confidence 4667888999999999999999999999999998642 257887653210 01111
Q ss_pred hHHHHHHHHh---ccc--ccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 195 SVAKRVAEEF---GCR--LGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 195 ~~~~~v~~~~---~~~--~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
++.+++.... +.. ..+.+...+...+.. ..+..+..||+||+||++||++++.+|++||||||
T Consensus 106 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP------- 178 (264)
T PRK14243 106 SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEP------- 178 (264)
T ss_pred cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC-------
Confidence 1222222110 000 000111111111110 12356778999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEe---------CCeeee
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVD---------PGFVKQ 327 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid---------~G~~~~ 327 (350)
+..+++.........+ .+-.+||++||..+....++|.+++++ .|++.+
T Consensus 179 --------------t~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 179 --------------CSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred --------------CccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 3333333322111100 001469999999999999999999998 687643
No 254
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=7.2e-20 Score=168.44 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=106.9
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC----CCcEEEEcCCc-------------chhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT----ARGKIGCTQPR-------------RVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~----~~G~i~~~~~~-------------~i~~--------- 193 (350)
+.+++...+++|++++|+|+|||||||++++++|...+. .+|+|.+.... .+++
T Consensus 19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (252)
T PRK14272 19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFP 98 (252)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCc
Confidence 356677889999999999999999999999999987432 26777553110 1111
Q ss_pred -hhHHHHHHHHhc---ccccc----hhhhhhhcccC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 194 -MSVAKRVAEEFG---CRLGQ----EVGYTIRFEDC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 194 -~~~~~~v~~~~~---~~~~~----~v~~~~~~~~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
.++.+++..... ....+ .+...+...+. ...++.+..||+||+||++||++++.+|+++|||||
T Consensus 99 ~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP--- 175 (252)
T PRK14272 99 TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP--- 175 (252)
T ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC---
Confidence 122333332111 00000 01111111111 112466789999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
...++......... ...+-.+||++||..+....++|.+++++.|++.+
T Consensus 176 ------------------~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14272 176 ------------------TSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE 227 (252)
T ss_pred ------------------CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 33333322211111 00001469999999999989999999999999854
No 255
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.80 E-value=4.9e-20 Score=169.35 Aligned_cols=164 Identities=16% Similarity=0.148 Sum_probs=107.1
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhhh----------hHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAAM----------SVAKR 199 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~~----------~~~~~ 199 (350)
.+++...+++|++++|+|+|||||||++++++|..+ + +|.|.+.... .++++ +..++
T Consensus 12 l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 466778899999999999999999999999999873 3 7888663210 01111 11222
Q ss_pred HHHHhcc--cc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCC-------CCcEEEEcCCCcccccccc
Q psy9590 200 VAEEFGC--RL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLN-------NYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 200 v~~~~~~--~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~-------~~~viIlDEpher~~~~d~ 266 (350)
+...... .. ...+...+...+... .++.+..||+||+||++||++++. +|+++|||||
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEP--------- 160 (248)
T PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEP--------- 160 (248)
T ss_pred HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCC---------
Confidence 2211000 00 011122222222222 246678999999999999999997 6799999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcccc---c-ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNA---W-RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~-~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ . .-.+||++||..+....++|.+++++.|++..
T Consensus 161 ------------t~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (248)
T PRK03695 161 ------------MNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA 213 (248)
T ss_pred ------------cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 3344433222111100 0 01469999999999999999999999999854
No 256
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.1e-20 Score=172.55 Aligned_cols=167 Identities=20% Similarity=0.252 Sum_probs=107.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCC-------------cchhhh--------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQP-------------RRVAAM-------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~-------------~~i~~~-------- 194 (350)
+.+++..++.+|++++|+|+||||||||+++++|...+ +.+|+|.+... +.++++
T Consensus 54 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 133 (285)
T PRK14254 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP 133 (285)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCc
Confidence 45677889999999999999999999999999998752 45788765210 011111
Q ss_pred -hHHHHHHHHh---ccc--ccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 195 -SVAKRVAEEF---GCR--LGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 195 -~~~~~v~~~~---~~~--~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
++.+++.... +.. ....+...+...+.. ..+..+..||+||+||++||++++.+|++||||||
T Consensus 134 ~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEP------ 207 (285)
T PRK14254 134 KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEP------ 207 (285)
T ss_pred CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC------
Confidence 2223332211 000 011122222222221 12456779999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEE-EEeCCeeee
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFY-VVDPGFVKQ 327 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~-vid~G~~~~ 327 (350)
+..++......... ...+-.+||++||..+....++|.++ +++.|++.+
T Consensus 208 ---------------ts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 208 ---------------ASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred ---------------CCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE
Confidence 33333322221111 00011469999999999999999865 569999854
No 257
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.80 E-value=3.8e-20 Score=183.35 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=110.6
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------chhhhhHHHHHHHH---hccc--
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------RVAAMSVAKRVAEE---FGCR-- 207 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------~i~~~~~~~~v~~~---~~~~-- 207 (350)
.+++...+.+|++++|+|+||||||||+++++|+. .+.+|.|.+.... .....++.+.+... .+..
T Consensus 40 L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~ 118 (549)
T PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKE 118 (549)
T ss_pred EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHH
Confidence 45667788999999999999999999999999997 4558888663211 01112333443321 1111
Q ss_pred -ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccce
Q psy9590 208 -LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPL 285 (350)
Q Consensus 208 -~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~ 285 (350)
..+.+...+...+... .++.+..||+||+||++||+||+.+|++|||||| +..+++.
T Consensus 119 e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEP---------------------TsgLD~~ 177 (549)
T PRK13545 119 KIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEA---------------------LSVGDQT 177 (549)
T ss_pred HHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECC---------------------cccCCHH
Confidence 0011222233333322 2467889999999999999999999999999999 3333333
Q ss_pred eccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 286 YNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 286 ~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
........+. .-.+||++||+.+....+||.+++++.|.+..
T Consensus 178 sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~ 223 (549)
T PRK13545 178 FTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE 223 (549)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 2221111000 01469999999999989999999999998753
No 258
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.6e-20 Score=187.90 Aligned_cols=165 Identities=16% Similarity=0.145 Sum_probs=111.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh------------hhHHHHHHHHhcc-
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA------------MSVAKRVAEEFGC- 206 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~------------~~~~~~v~~~~~~- 206 (350)
+.+++..++++|++++|+|+||||||||+++++|... +.+|.|.+.....+++ .++.+.+......
T Consensus 334 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~ 412 (530)
T PRK15064 334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-PDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEG 412 (530)
T ss_pred eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCC
Confidence 4567888999999999999999999999999999874 5578876532222222 2333333221110
Q ss_pred cccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccc
Q psy9590 207 RLGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEP 284 (350)
Q Consensus 207 ~~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~ 284 (350)
.....+...+...+.. ..++.+..|||||+||++||++++.+|++|||||| +..+++
T Consensus 413 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP---------------------t~~LD~ 471 (530)
T PRK15064 413 DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP---------------------TNHMDM 471 (530)
T ss_pred ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCC---------------------CCCCCH
Confidence 1111223333333332 23577889999999999999999999999999999 333333
Q ss_pred eeccCCcccccce-eEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 285 LYNKYEEPNAWRI-SRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 285 ~~~~~~~~~~~~~-~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
.........+... .+||++||+.+....++|.+++++.|.+.
T Consensus 472 ~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 472 ESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 3222111100000 25999999999999999999999999874
No 259
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.6e-20 Score=190.24 Aligned_cols=166 Identities=17% Similarity=0.176 Sum_probs=111.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-------------------------cchhh-
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-------------------------RRVAA- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-------------------------~~i~~- 193 (350)
+.+++..++.+|++++|+|+|||||||++++++|+.. +.+|.|.+... +.+++
T Consensus 31 ~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred EEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 4567888999999999999999999999999999984 44777654210 01111
Q ss_pred -----------hhHHHHHHHHh----ccc---ccchhhhhhhcccCCC----ccccccccChhHHHHHHHHhhcCCCCcE
Q psy9590 194 -----------MSVAKRVAEEF----GCR---LGQEVGYTIRFEDCTS----SETLIKYMTDGMLLRECLVDLDLNNYSV 251 (350)
Q Consensus 194 -----------~~~~~~v~~~~----~~~---~~~~v~~~~~~~~~~~----~~~~i~~lS~G~~qr~~ia~all~~~~v 251 (350)
+++.+++.... +.. ....+...+...+... .+..+..|||||+||++||+||+.+|++
T Consensus 110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~l 189 (623)
T PRK10261 110 FQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV 189 (623)
T ss_pred EeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCE
Confidence 12233333211 110 0012222333333322 2467789999999999999999999999
Q ss_pred EEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 252 IMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 252 iIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
|||||| +..+++........ ...+ -.+||++||+.+....++|.++|++.|++.
T Consensus 190 LllDEP---------------------t~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 190 LIADEP---------------------TTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred EEEeCC---------------------CCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 999999 44444433222111 1110 146999999999999999999999999986
Q ss_pred e
Q psy9590 327 Q 327 (350)
Q Consensus 327 ~ 327 (350)
+
T Consensus 249 ~ 249 (623)
T PRK10261 249 E 249 (623)
T ss_pred c
Confidence 4
No 260
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5.1e-20 Score=171.93 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=107.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchh-----------hhhHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVA-----------AMSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~-----------~~~~~ 197 (350)
+.+++...+.+|++++|+|+|||||||++++++|... +.+|+|.+... +.+. ..++.
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 3556777899999999999999999999999999984 55788765310 0011 11222
Q ss_pred HHHHHHh---cccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccCh
Q psy9590 198 KRVAEEF---GCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDP 270 (350)
Q Consensus 198 ~~v~~~~---~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~ 270 (350)
+++.... +... .+.+...+...+... .++.+..||+||+||++||++|+.+|++||||||
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEP------------- 167 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDES------------- 167 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC-------------
Confidence 3332110 1000 011222222222222 2356779999999999999999999999999999
Q ss_pred hHHHhhhhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 271 TKLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 271 l~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++......... .++ -.+||++||..+... .+|.+++++.|++.+
T Consensus 168 --------t~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~ 220 (277)
T PRK13642 168 --------TSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIK 220 (277)
T ss_pred --------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE
Confidence 333333322221110 111 146999999999975 599999999999864
No 261
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.80 E-value=5.3e-20 Score=185.51 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=113.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhh-------------h
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAA-------------M 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~-------------~ 194 (350)
..+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+... +.+++ .
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 3678888999999999999999999999999999874 45788866320 01222 1
Q ss_pred hHHHHHHHHh----c-----cc---ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 195 SVAKRVAEEF----G-----CR---LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 195 ~~~~~v~~~~----~-----~~---~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
++.+++.... . .. ..+.+...+...+.. ..++.+..|||||+||++||++++.+|++||||||
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEP--- 422 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEP--- 422 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC---
Confidence 2223332110 0 00 001222333333332 24577889999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcccccc----eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR----ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~----~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+.+ -.+||++||+.+....++|.+++++.|++.
T Consensus 423 ------------------t~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 474 (501)
T PRK10762 423 ------------------TRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS 474 (501)
T ss_pred ------------------CCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 444444433322211110 136999999999999999999999999874
No 262
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=7.2e-20 Score=166.77 Aligned_cols=163 Identities=13% Similarity=0.102 Sum_probs=102.5
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch------------hh---------hhHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV------------AA---------MSVAKR 199 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i------------~~---------~~~~~~ 199 (350)
.+++...+++|++++|+|+|||||||++++++|+.. +.+|+|.+... .+ .+ .++.++
T Consensus 17 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~v~~~g~-~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 94 (236)
T cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-VSSGSILIDGQ-DIREVTLDSLRRAIGVVPQDTVLFNDTIGYN 94 (236)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCEEEECCE-EhhhCCHHHHHhhEEEECCCChhhcchHHHH
Confidence 456777899999999999999999999999999884 56888876321 11 11 111122
Q ss_pred HHHHhcccccchhhhhh------hcccCC------CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTI------RFEDCT------SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~------~~~~~~------~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+...........+.... ...... .....+..||+||+||++||++|+.+|+++|||||
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP---------- 164 (236)
T cd03253 95 IRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEA---------- 164 (236)
T ss_pred HhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCC----------
Confidence 21100000000000000 000000 01234678999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ .+-.+||++||..+... .+|.+++++.|.+..
T Consensus 165 -----------~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~-~~d~~~~l~~g~i~~ 215 (236)
T cd03253 165 -----------TSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV-NADKIIVLKDGRIVE 215 (236)
T ss_pred -----------cccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEe
Confidence 3333333222111100 00136999999999885 599999999998853
No 263
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=9e-20 Score=167.78 Aligned_cols=167 Identities=18% Similarity=0.182 Sum_probs=106.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC----CCcEEEEcCC-------------cchhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT----ARGKIGCTQP-------------RRVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~----~~G~i~~~~~-------------~~i~~--------- 193 (350)
+.+++...+.+|++++|+|+||||||||++.++|...+. .+|.|.+... +.+++
T Consensus 19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (251)
T PRK14249 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP 98 (251)
T ss_pred EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc
Confidence 345677789999999999999999999999999987543 2577755311 00111
Q ss_pred hhHHHHHHHHh---ccccc----chhhhhhhcccC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 194 MSVAKRVAEEF---GCRLG----QEVGYTIRFEDC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 194 ~~~~~~v~~~~---~~~~~----~~v~~~~~~~~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.++.+++.... +.... ..+...+...+. ...++.+..||+||+||++||++++.+|+++|||||
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP---- 174 (251)
T PRK14249 99 KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEP---- 174 (251)
T ss_pred CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC----
Confidence 12223332111 10000 111111111111 012356778999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ....-.+||++||..+....++|.+++++.|.+.+
T Consensus 175 -----------------t~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 175 -----------------CSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred -----------------CccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 33333222211100 00001469999999999999999999999998853
No 264
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.80 E-value=1.1e-19 Score=167.19 Aligned_cols=167 Identities=14% Similarity=0.147 Sum_probs=105.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc-CCCCCcEEEEcCC----------cc--hhh----------hhH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEA-GFTARGKIGCTQP----------RR--VAA----------MSV 196 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~-~~~~~G~i~~~~~----------~~--i~~----------~~~ 196 (350)
+.+++..++.+|++++|+|+|||||||++++++|.. ..+.+|+|.+... ++ +.+ .+.
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 101 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSN 101 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccH
Confidence 456677889999999999999999999999999973 1355787765310 00 111 111
Q ss_pred HHHHHHHhcc-------c------ccchhhhhhhcccCCC--cccccc-ccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 197 AKRVAEEFGC-------R------LGQEVGYTIRFEDCTS--SETLIK-YMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 197 ~~~v~~~~~~-------~------~~~~v~~~~~~~~~~~--~~~~i~-~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
...+...... . ....+...+...+... .++.+. .||+||+||++||++++.+|+++|||||
T Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP--- 178 (252)
T CHL00131 102 ADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET--- 178 (252)
T ss_pred HHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCC---
Confidence 2222111100 0 0011122223333321 234554 5999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEeccccccccc-CCEEEEEeCCeeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTI-DGIFYVVDPGFVKQ 327 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti-~d~~~vid~G~~~~ 327 (350)
+..++....+.....+ .+ -.+||++||+.+....+ +|.+++++.|++..
T Consensus 179 ------------------t~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 179 ------------------DSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred ------------------cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 3333333222111100 00 14699999999988776 89999999998853
No 265
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=6.3e-20 Score=186.10 Aligned_cols=165 Identities=16% Similarity=0.138 Sum_probs=112.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------------cchhh------------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------------RRVAA------------ 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------------~~i~~------------ 193 (350)
+.+++..++++|++++|+|+||||||||+++++|+.+ .+|+|.+... +.+++
T Consensus 301 il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 4678899999999999999999999999999999873 5788866320 01221
Q ss_pred hhHHHHHHHHh--c---cc---ccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 194 MSVAKRVAEEF--G---CR---LGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 194 ~~~~~~v~~~~--~---~~---~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
.++.+.++... . .. ....+...+...+.. ..++.+..|||||+||++||++++.+|++||||||
T Consensus 379 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP------ 452 (529)
T PRK15134 379 LNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEP------ 452 (529)
T ss_pred ccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCC------
Confidence 12223332211 0 00 001222233333332 13467889999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ ++ -.+||++||+.+....++|.+++++.|++..
T Consensus 453 ---------------t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 453 ---------------TSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred ---------------ccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 4444444333222111 11 1469999999999999999999999998853
No 266
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.80 E-value=9.3e-20 Score=173.83 Aligned_cols=150 Identities=19% Similarity=0.211 Sum_probs=99.7
Q ss_pred EeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cchh----------hhhHHHHHHHHhc---cc---ccc
Q psy9590 156 VIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRVA----------AMSVAKRVAEEFG---CR---LGQ 210 (350)
Q Consensus 156 liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i~----------~~~~~~~v~~~~~---~~---~~~ 210 (350)
|+|+|||||||++++++|+.. +.+|+|.+... +.++ .+++.+++..... .. ...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 589999999999999999984 55888765320 1111 1234444443211 10 011
Q ss_pred hhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccC
Q psy9590 211 EVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKY 289 (350)
Q Consensus 211 ~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~ 289 (350)
.+...+...+... .++.+..|||||+||++||++|+.+|+++||||| ...++......
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP---------------------~s~LD~~~~~~ 138 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEP---------------------LSALDKKLRDQ 138 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC---------------------CccCCHHHHHH
Confidence 2233333333332 3467789999999999999999999999999999 33444333222
Q ss_pred Cccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 290 EEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 290 ~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
....+. + -.+||++||+.+....++|.+++++.|++.+
T Consensus 139 l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~ 181 (325)
T TIGR01187 139 MQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQ 181 (325)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 111000 0 1469999999999999999999999999864
No 267
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.9e-20 Score=185.15 Aligned_cols=165 Identities=18% Similarity=0.137 Sum_probs=110.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhhh----------hHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAAM----------SVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~~----------~~~ 197 (350)
+.+++...+++|++++|+|+||||||||+++++|... +.+|.|.+... +.++++ ++.
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVA 97 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHH
Confidence 3566788899999999999999999999999999874 55888866321 012211 222
Q ss_pred HHHHHHh-----cc-c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 198 KRVAEEF-----GC-R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 198 ~~v~~~~-----~~-~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+++.... +. . ....+...+...+... .++.+..|||||+||++||++++.+|+++|||||
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP---------- 167 (501)
T PRK11288 98 ENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEP---------- 167 (501)
T ss_pred HHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCC----------
Confidence 3332210 00 0 0011222222223322 2467789999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+. + -.+||++||+.+....++|.+++++.|.+.
T Consensus 168 -----------t~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 168 -----------TSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 33444333222211000 0 146999999999999999999999999875
No 268
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.79 E-value=6.2e-20 Score=163.69 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=98.5
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc---------------chhh----------hh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR---------------RVAA----------MS 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~---------------~i~~----------~~ 195 (350)
.+++...+.+|++++|+|+|||||||++++++|... +.+|+|.+.... .+++ .+
T Consensus 14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (206)
T TIGR03608 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENET 92 (206)
T ss_pred EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCc
Confidence 456778899999999999999999999999999874 558887663211 0111 11
Q ss_pred HHHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.+++.... +.. ..+.+...+...+... .++.+..||+||+||++||++|+.+|+++|||||
T Consensus 93 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEP----------- 161 (206)
T TIGR03608 93 VEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEP----------- 161 (206)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC-----------
Confidence 112221100 000 0011222222222222 2466789999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccc---ccc-eeEEEEEecccccccccCCEEEEE
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPN---AWR-ISRVVIATNIAETSLTIDGIFYVV 320 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~---~~~-~~~vi~sT~iae~s~ti~d~~~vi 320 (350)
+..+++...+..... ..+ -.+||++||..+. ..++|.++++
T Consensus 162 ----------t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~d~i~~l 206 (206)
T TIGR03608 162 ----------TGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV-AKQADRVIEL 206 (206)
T ss_pred ----------cCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhcCEEEeC
Confidence 333333222211110 000 1469999999985 4689988764
No 269
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1e-19 Score=187.92 Aligned_cols=165 Identities=13% Similarity=0.125 Sum_probs=107.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh---------hhHHHHHHHH-------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA---------MSVAKRVAEE------- 203 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~---------~~~~~~v~~~------- 203 (350)
+.+++...|.+|++++|+|+||||||||+++++|... +.+|.|.+....++.+ .+....+...
T Consensus 16 ~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l 94 (638)
T PRK10636 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-ADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQL 94 (638)
T ss_pred eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHH
Confidence 3567788899999999999999999999999999874 5588876532111100 0111111100
Q ss_pred -------------------hc-------ccccchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEc
Q psy9590 204 -------------------FG-------CRLGQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLD 255 (350)
Q Consensus 204 -------------------~~-------~~~~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlD 255 (350)
.+ ......+...+...+.. ..++.+..|||||+||++||++|+.+|++||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLD 174 (638)
T PRK10636 95 EAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLD 174 (638)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEc
Confidence 00 00001222223333332 235678899999999999999999999999999
Q ss_pred CCCccccccccccChhHHHhhhhcCcccceeccCCcccccce-eEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 256 EAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI-SRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 256 Epher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
|| +-.++..........+.+. .+||++||+.+....++|.+++++.|.+.
T Consensus 175 EP---------------------tn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 175 EP---------------------TNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred CC---------------------CCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 99 2222222111111000000 35999999999999999999999999884
No 270
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.79 E-value=9.9e-20 Score=184.67 Aligned_cols=167 Identities=15% Similarity=0.150 Sum_probs=110.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC----CCcEEEEcCC---------------cchhhhh-----
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT----ARGKIGCTQP---------------RRVAAMS----- 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~----~~G~i~~~~~---------------~~i~~~~----- 195 (350)
+.+++..++.+|++++|+|+||||||||+++++|...+. .+|.|.+... +.++++.
T Consensus 24 ~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~ 103 (529)
T PRK15134 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV 103 (529)
T ss_pred eeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchh
Confidence 356778889999999999999999999999999998541 5788765310 0111111
Q ss_pred -------HHHHHHHHh----ccc---ccchhhhhhhcccCCC----ccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 196 -------VAKRVAEEF----GCR---LGQEVGYTIRFEDCTS----SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 196 -------~~~~v~~~~----~~~---~~~~v~~~~~~~~~~~----~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
+.+.+.... +.. ....+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEP 183 (529)
T PRK15134 104 SLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEP 183 (529)
T ss_pred hcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 111121100 110 0112223333333322 2467889999999999999999999999999999
Q ss_pred CccccccccccChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 258 HERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 258 her~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.+++........ ...+ -.+||++||+.+....++|.+++++.|++..
T Consensus 184 ---------------------t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 184 ---------------------TTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred ---------------------CCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 33444333222111 0000 1469999999999999999999999998753
No 271
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-19 Score=169.46 Aligned_cols=166 Identities=16% Similarity=0.229 Sum_probs=105.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCC-------------cchhhh--------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQP-------------RRVAAM-------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~-------------~~i~~~-------- 194 (350)
+.+++..++++|++++|+|+||||||||+++++|+..+ +.+|+|.+... +.++++
T Consensus 35 ~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~ 114 (274)
T PRK14265 35 ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP 114 (274)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc
Confidence 35667888999999999999999999999999998642 14787765321 001111
Q ss_pred -hHHHHHHHHh---cc--cccchhhhhhhcccC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 195 -SVAKRVAEEF---GC--RLGQEVGYTIRFEDC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 195 -~~~~~v~~~~---~~--~~~~~v~~~~~~~~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
++.+++.... +. .....+...+...+. ...++.+..||+||+||++||+|++.+|++||||||
T Consensus 115 ~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEP------ 188 (274)
T PRK14265 115 KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP------ 188 (274)
T ss_pred ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCC------
Confidence 1222222110 00 000011111111111 012356678999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEe---------CCeee
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVD---------PGFVK 326 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid---------~G~~~ 326 (350)
+..++..........+ ++-.+||++||..+....++|.+++++ .|++.
T Consensus 189 ---------------t~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 189 ---------------CSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred ---------------cccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 3333333222111100 011469999999999999999999997 67774
No 272
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.79 E-value=1.4e-19 Score=166.13 Aligned_cols=167 Identities=13% Similarity=0.091 Sum_probs=103.9
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC-CCCCcEEEEcCCc------------chhhhhHH---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG-FTARGKIGCTQPR------------RVAAMSVA--------- 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~-~~~~G~i~~~~~~------------~i~~~~~~--------- 197 (350)
+.+++...+++|++++|+|+|||||||++++++|... .+.+|+|.+.... .+.+.+..
T Consensus 16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 95 (248)
T PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSN 95 (248)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhH
Confidence 3566778899999999999999999999999999852 3568888664210 01111100
Q ss_pred -HHHHHHhc-c--c-c---------cchhhhhhhcccCCC--cccccc-ccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 198 -KRVAEEFG-C--R-L---------GQEVGYTIRFEDCTS--SETLIK-YMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 198 -~~v~~~~~-~--~-~---------~~~v~~~~~~~~~~~--~~~~i~-~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
.+...... . . . ...+...+...+... .++.+. .||+||+||++||++++.+|+++|||||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEP--- 172 (248)
T PRK09580 96 QFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES--- 172 (248)
T ss_pred HHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCC---
Confidence 00000000 0 0 0 000111111112211 123333 6999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcc---cccc-eeEEEEEeccccccccc-CCEEEEEeCCeeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-ISRVVIATNIAETSLTI-DGIFYVVDPGFVKQ 327 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~~~vi~sT~iae~s~ti-~d~~~vid~G~~~~ 327 (350)
+..++......... ...+ -.+||++||+.+....+ +|.+++++.|++..
T Consensus 173 ------------------t~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~ 226 (248)
T PRK09580 173 ------------------DSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226 (248)
T ss_pred ------------------CccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE
Confidence 33333332222111 0001 14699999999988777 89999999998853
No 273
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=5e-20 Score=186.86 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchh----------hhhHHHHHHHH------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVA----------AMSVAKRVAEE------ 203 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~----------~~~~~~~v~~~------ 203 (350)
+.+++..++++|++++|+|+||||||||+++++|... +.+|.|.+.....++ ..++.+.+...
T Consensus 16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 94 (530)
T PRK15064 16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-PSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWE 94 (530)
T ss_pred eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHH
Confidence 3566778899999999999999999999999999884 457887653211111 12222222110
Q ss_pred --------hcc------------------------cccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCC
Q psy9590 204 --------FGC------------------------RLGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNY 249 (350)
Q Consensus 204 --------~~~------------------------~~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~ 249 (350)
.+. .....+...+...+... .+..+..|||||+||++||++|+.+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p 174 (530)
T PRK15064 95 VKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNP 174 (530)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCC
Confidence 000 00011222233333322 12467899999999999999999999
Q ss_pred cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 250 SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 250 ~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
++|||||| +..+++.........+.. -.+||++||+.+....++|.+++++.|++.
T Consensus 175 ~lLlLDEP---------------------t~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 175 DILLLDEP---------------------TNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred CEEEEcCC---------------------CcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 99999999 222222222111100000 035999999999999999999999999874
No 274
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.3e-19 Score=167.81 Aligned_cols=166 Identities=17% Similarity=0.221 Sum_probs=106.3
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCCc-------------chhh---------h
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQPR-------------RVAA---------M 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~~-------------~i~~---------~ 194 (350)
.+++...+++|++++|+|+||||||||++++.|+..+ +.+|+|.+.... .+++ .
T Consensus 24 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (261)
T PRK14263 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSM 103 (261)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccc
Confidence 4566778999999999999999999999999998753 257887663210 0111 1
Q ss_pred hHHHHHHHHhcc-----cccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 195 SVAKRVAEEFGC-----RLGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 195 ~~~~~v~~~~~~-----~~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
++.+++...... .....+...++..+.. ..++....||+||+||++||+|++.+|+++|||||
T Consensus 104 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP------- 176 (261)
T PRK14263 104 SIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEP------- 176 (261)
T ss_pred cHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC-------
Confidence 222222211000 0001122222222221 11245678999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEe--------CCeeee
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVD--------PGFVKQ 327 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid--------~G~~~~ 327 (350)
+..+++........ ..++-++||++||..+....++|.+++++ .|++.+
T Consensus 177 --------------tsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 177 --------------CSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred --------------CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence 33333332221111 00011469999999999999999999996 788754
No 275
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.4e-19 Score=168.54 Aligned_cols=166 Identities=19% Similarity=0.207 Sum_probs=106.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC--C--CCCcEEEEcCC-------------cchhh---------h
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG--F--TARGKIGCTQP-------------RRVAA---------M 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~--~--~~~G~i~~~~~-------------~~i~~---------~ 194 (350)
.+++..++++|++++|+|+||||||||+++++|... + +.+|+|.+... +.+++ .
T Consensus 40 l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 119 (271)
T PRK14238 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK 119 (271)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc
Confidence 466777899999999999999999999999999874 2 45788765321 01111 1
Q ss_pred hHHHHHHHHh---ccccc----chhhhhhhccc----CC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 195 SVAKRVAEEF---GCRLG----QEVGYTIRFED----CT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 195 ~~~~~v~~~~---~~~~~----~~v~~~~~~~~----~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
++.+++.... +.... ..+...++..+ .. ..+..+..||+||+||++||++|+.+|+++|||||
T Consensus 120 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEP----- 194 (271)
T PRK14238 120 SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEP----- 194 (271)
T ss_pred cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC-----
Confidence 2223332111 10000 00111111110 11 12356778999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. +-++||++||+.+....++|.+++++.|++..
T Consensus 195 ----------------t~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 246 (271)
T PRK14238 195 ----------------TSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE 246 (271)
T ss_pred ----------------CCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 33333332221111000 01469999999999989999999999999854
No 276
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.79 E-value=1.3e-19 Score=163.49 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=105.2
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch---------------hh----------hh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV---------------AA----------MS 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i---------------~~----------~~ 195 (350)
.+++...+.+|++++|+|+|||||||++++++|... +.+|+|.+... .+ ++ .+
T Consensus 21 l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (220)
T TIGR02982 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-VQEGSLKVLGQ-ELYGASEKELVQLRRNIGYIFQAHNLLGFLT 98 (220)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-EhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence 456777899999999999999999999999999874 56888866321 11 11 11
Q ss_pred HHHHHHHHh--c--cc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 196 VAKRVAEEF--G--CR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 196 ~~~~v~~~~--~--~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
..+++.... . .. ....+...+...+... .+..+..||+||+||++||++++.+|+++|||||
T Consensus 99 ~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP---------- 168 (220)
T TIGR02982 99 ARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEP---------- 168 (220)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC----------
Confidence 222222110 0 00 0011222233333322 2466789999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
+..++......... ...+ -++||++||..+. ..++|.+++++.|+.
T Consensus 169 -----------~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 169 -----------TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred -----------CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 33333332211111 0000 1569999999985 589999999999974
No 277
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.3e-19 Score=166.86 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=105.5
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC-C---CCcEEEEcCCc-------------chhh---------h
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF-T---ARGKIGCTQPR-------------RVAA---------M 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~-~---~~G~i~~~~~~-------------~i~~---------~ 194 (350)
.+++..++.+|++++|+|+||||||||+++++|.... + .+|+|.+.... .+++ .
T Consensus 22 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 101 (253)
T PRK14261 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK 101 (253)
T ss_pred eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc
Confidence 4567778999999999999999999999999997542 2 36877653110 0111 1
Q ss_pred hHHHHHHHHh---cccc----cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 195 SVAKRVAEEF---GCRL----GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 195 ~~~~~v~~~~---~~~~----~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
++.+++.... +... ...+...+...+.. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 102 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP----- 176 (253)
T PRK14261 102 SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEP----- 176 (253)
T ss_pred cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC-----
Confidence 2222222110 1000 00111111111111 12456778999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
...+++........ ...+-.+||++||..+....++|.+++++.|++..
T Consensus 177 ----------------~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 177 ----------------CSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred ----------------cccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 33333322211111 00011469999999999989999999999999853
No 278
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.79 E-value=9.9e-20 Score=169.45 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=106.4
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC-------CCcEEEEcCCcch------------h---------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT-------ARGKIGCTQPRRV------------A--------- 192 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~-------~~G~i~~~~~~~i------------~--------- 192 (350)
.+++...+++|++++|+|+|||||||++++++|...+. .+|.|.+... .+ .
T Consensus 17 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~-~~~~~~~~~~~~~~~~v~q~~~~~ 95 (272)
T PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE-PLAAIDAPRLARLRAVLPQAAQPA 95 (272)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCE-EcccCCHHHHHhhcEEecccCCCC
Confidence 45677889999999999999999999999999987443 1688766321 11 0
Q ss_pred -hhhHHHHHHHHh-cc-c--------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcC---------CCCcE
Q psy9590 193 -AMSVAKRVAEEF-GC-R--------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDL---------NNYSV 251 (350)
Q Consensus 193 -~~~~~~~v~~~~-~~-~--------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all---------~~~~v 251 (350)
..++.+++.... .. . ....+...+...+... .++.+..||+||+||++||++++ .+|++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~l 175 (272)
T PRK13547 96 FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRY 175 (272)
T ss_pred CCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCE
Confidence 112222222110 00 0 0001111222222221 23567799999999999999999 59999
Q ss_pred EEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 252 IMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 252 iIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+||||| +..++....+..... ..+ -.+||++||..+....++|.+++++.|.+.
T Consensus 176 llLDEP---------------------t~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~ 234 (272)
T PRK13547 176 LLLDEP---------------------TAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV 234 (272)
T ss_pred EEEcCc---------------------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 999999 333333322211110 000 146999999999998999999999999875
Q ss_pred e
Q psy9590 327 Q 327 (350)
Q Consensus 327 ~ 327 (350)
.
T Consensus 235 ~ 235 (272)
T PRK13547 235 A 235 (272)
T ss_pred E
Confidence 3
No 279
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.3e-19 Score=167.57 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=106.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC----CCcEEEEcCCc-------------chhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT----ARGKIGCTQPR-------------RVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~----~~G~i~~~~~~-------------~i~~--------- 193 (350)
+.+++..++.+|++++|+|+||||||||+++++|...++ .+|+|.+.... .+++
T Consensus 22 il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 101 (259)
T PRK14260 22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP 101 (259)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC
Confidence 346677789999999999999999999999999987532 36877653210 0111
Q ss_pred hhHHHHHHHHhcc----c---ccchhhhhhhcccC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 194 MSVAKRVAEEFGC----R---LGQEVGYTIRFEDC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 194 ~~~~~~v~~~~~~----~---~~~~v~~~~~~~~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.++.+++...... . ....+...+...+. ...++.+..||+||+||++||++++.+|+++|||||
T Consensus 102 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP---- 177 (259)
T PRK14260 102 MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP---- 177 (259)
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC----
Confidence 1222333211100 0 00111111111111 112356779999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEe-----CCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVD-----PGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid-----~G~~~~ 327 (350)
+..+++.........+ .+-++||++||..+....++|.+++++ .|++.+
T Consensus 178 -----------------t~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 178 -----------------CSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred -----------------CccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 3344433222111100 001469999999999999999999997 487753
No 280
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.79 E-value=9.3e-20 Score=183.29 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=111.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--cc----------hhhhhHH----------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--RR----------VAAMSVA---------- 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--~~----------i~~~~~~---------- 197 (350)
+.+++...+++|++++|+|+|||||||++++++|... +.+|+|.+... .. +++.+..
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 341 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL 341 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence 4677888999999999999999999999999999884 55898877421 00 1111110
Q ss_pred ---HH-----HHHH---hcccc----cchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 198 ---KR-----VAEE---FGCRL----GQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 198 ---~~-----v~~~---~~~~~----~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
.+ +... ++... ...+...+...+.. ..++.+..|||||+||++||++++.+|++||||||
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEP--- 418 (491)
T PRK10982 342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEP--- 418 (491)
T ss_pred cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCC---
Confidence 00 1000 00000 00111122222221 23577889999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+ .. -.+||++||+.+....+||.+++++.|++.
T Consensus 419 ------------------t~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 419 ------------------TRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred ------------------CcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 5555555443332211 10 156999999999999999999999999986
No 281
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.7e-19 Score=165.92 Aligned_cols=167 Identities=17% Similarity=0.218 Sum_probs=106.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC-CC---CCcEEEEcCC-------------cchhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG-FT---ARGKIGCTQP-------------RRVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~-~~---~~G~i~~~~~-------------~~i~~--------- 193 (350)
+.+++...+.+|++++|+|+||||||||+++++|... .+ .+|+|.+... +.+++
T Consensus 20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 99 (252)
T PRK14255 20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP 99 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC
Confidence 3566777899999999999999999999999999753 12 3677654210 00111
Q ss_pred hhHHHHHHHHh---ccccc----chhhhhhhcccC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 194 MSVAKRVAEEF---GCRLG----QEVGYTIRFEDC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 194 ~~~~~~v~~~~---~~~~~----~~v~~~~~~~~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.++.+++.... +.... ..+...+...+. ...+..+..||+||+||++||++++.+|+++|||||
T Consensus 100 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP---- 175 (252)
T PRK14255 100 FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEP---- 175 (252)
T ss_pred CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC----
Confidence 12233332211 10000 011111111111 112356779999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++..........+ .+-.+||++||..+....++|.+++++.|++..
T Consensus 176 -----------------t~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14255 176 -----------------TSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227 (252)
T ss_pred -----------------CccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 3333333222111100 001369999999999989999999999999854
No 282
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.79 E-value=9.1e-20 Score=185.78 Aligned_cols=165 Identities=17% Similarity=0.169 Sum_probs=108.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch----------hhhhHHHHHHHHh-----
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV----------AAMSVAKRVAEEF----- 204 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i----------~~~~~~~~v~~~~----- 204 (350)
+.+++..++++|++++|+|+||||||||+++++|... +.+|.|.+.....+ ...++.+++....
T Consensus 20 il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~ 98 (552)
T TIGR03719 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKD 98 (552)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHH
Confidence 3567888999999999999999999999999999974 45787755311111 1223333332110
Q ss_pred ------------ccccc-------------------------chhhhhhhcccCCCccccccccChhHHHHHHHHhhcCC
Q psy9590 205 ------------GCRLG-------------------------QEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLN 247 (350)
Q Consensus 205 ------------~~~~~-------------------------~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~ 247 (350)
..... ..+...+...+....++.+..|||||+||++||++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~ 178 (552)
T TIGR03719 99 ALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLS 178 (552)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhc
Confidence 00000 01111222222222356788999999999999999999
Q ss_pred CCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 248 NYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 248 ~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+|++|||||| +..+++.........+.. -.+||++||+.+....++|.+++++.|.+.
T Consensus 179 ~p~lLLLDEP---------------------t~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 179 KPDMLLLDEP---------------------TNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred CCCEEEEcCC---------------------CCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 9999999999 333333222211110000 035999999999999999999999999864
No 283
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.79 E-value=1.2e-19 Score=169.03 Aligned_cols=163 Identities=21% Similarity=0.291 Sum_probs=102.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~~---------~~~~~ 199 (350)
+.+++...|++|++++|+|+|||||||++++++++.. .+|+|.+.... .++++ ++.++
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n 96 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence 4677888999999999999999999999999999984 47888764210 11111 11122
Q ss_pred HHHHhcccccchhhhhhhcccCCC-cccc-----------ccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRFEDCTS-SETL-----------IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~~~~~~-~~~~-----------i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.. ++....+.+...+...+... .+.. ...||+||+||++||+|++.+|+++|||||
T Consensus 97 l~~-~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEp---------- 165 (275)
T cd03289 97 LDP-YGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP---------- 165 (275)
T ss_pred hhh-ccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECc----------
Confidence 210 01000011111111111110 0111 234999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++......... ....-++||++||..++... +|.++|++.|++.+
T Consensus 166 -----------ts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~ 216 (275)
T cd03289 166 -----------SAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQ 216 (275)
T ss_pred -----------cccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEee
Confidence 22332222111100 00011469999999998764 99999999999854
No 284
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.79 E-value=1.1e-19 Score=161.99 Aligned_cols=161 Identities=12% Similarity=0.115 Sum_probs=102.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------CcchhhhhHHHHHHHHhcccccchh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------PRRVAAMSVAKRVAEEFGCRLGQEV 212 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~~~i~~~~~~~~v~~~~~~~~~~~v 212 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.. ...+...+..+++....... ....
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~-~~~~ 97 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-KLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFD-EERY 97 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcC-HHHH
Confidence 3556788999999999999999999999999999874 5578775431 11111223333333211000 0001
Q ss_pred hhhh------hcccCC------CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcC
Q psy9590 213 GYTI------RFEDCT------SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQ 280 (350)
Q Consensus 213 ~~~~------~~~~~~------~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~ 280 (350)
.... ...+.. ........||+||+||++||++++.+|+++|+||| ..
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP---------------------~~ 156 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP---------------------LS 156 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc---------------------cc
Confidence 0000 001100 11244678999999999999999999999999999 22
Q ss_pred cccceeccCCcc----cccc-eeEEEEEecccccccccCCEEEEEeCCe
Q psy9590 281 RLEPLYNKYEEP----NAWR-ISRVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 281 ~v~~~~~~~~~~----~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
.+++...+.... ...+ -++||++||..+.... +|.+++++.|+
T Consensus 157 ~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 157 AVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred cCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 333222111100 0000 1469999999998877 99999999884
No 285
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.79 E-value=1.4e-19 Score=187.11 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=106.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh----------hhHHHHHH--------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA----------MSVAKRVA-------- 201 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~----------~~~~~~v~-------- 201 (350)
+.+++...+.+|++++|+|+||||||||+++++|... +.+|.|.+.....+.+ ..+...+.
T Consensus 18 il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~ 96 (635)
T PRK11147 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-LDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAE 96 (635)
T ss_pred eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHH
Confidence 4566788899999999999999999999999999874 5578886532111000 00111000
Q ss_pred ---------HHhc-----------------------ccccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCC
Q psy9590 202 ---------EEFG-----------------------CRLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNY 249 (350)
Q Consensus 202 ---------~~~~-----------------------~~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~ 249 (350)
.... ......+...+...+.. .++.+..|||||+||++||++|+.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGekqRv~LAraL~~~P 175 (635)
T PRK11147 97 YLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGWLRKAALGRALVSNP 175 (635)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHHHHHHHHHHHHhcCC
Confidence 0000 00001122222223332 35678899999999999999999999
Q ss_pred cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccce-eEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 250 SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI-SRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 250 ~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
++|||||| +-.+++.........+... .+||++||+.+....++|.+++++.|++.
T Consensus 176 ~lLLLDEP---------------------t~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 176 DVLLLDEP---------------------TNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred CEEEEcCC---------------------CCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999 2233322221111100000 35999999999999999999999999885
No 286
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.79 E-value=8.2e-20 Score=161.06 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=76.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-------------chhhh-----------hH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-------------RVAAM-----------SV 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-------------~i~~~-----------~~ 196 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|+|.+.... .++++ ++
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv 86 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADV 86 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccH
Confidence 456777899999999999999999999999999874 557887653200 01111 11
Q ss_pred HHHHHHH---hccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 197 AKRVAEE---FGCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 197 ~~~v~~~---~~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
.+++... .+.. ..+.+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 87 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 87 DQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2222111 0000 0011222222222222 3467789999999999999999999999999999
No 287
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.79 E-value=1.2e-19 Score=179.07 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=113.3
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC---CCcEEEEcCCcchhhhhHH------------------
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT---ARGKIGCTQPRRVAAMSVA------------------ 197 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~---~~G~i~~~~~~~i~~~~~~------------------ 197 (350)
.+.+++.+++.+||+++|+|++||||||+...++++.+.. .+|+|.+... .+..++..
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~-dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR-DLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc-chhcCCHHHHHHhccccEEEEecCch
Confidence 3567899999999999999999999999999999998655 3788866421 11111111
Q ss_pred ----------HHHHHHh---c----ccccchhhhhhhcccCCCcc---ccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 198 ----------KRVAEEF---G----CRLGQEVGYTIRFEDCTSSE---TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 198 ----------~~v~~~~---~----~~~~~~v~~~~~~~~~~~~~---~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
..+.+.+ + ......+-..++..+..... ....+|||||+||++||+||+.+|++||+|||
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 1111110 0 00111111222222332222 24668999999999999999999999999999
Q ss_pred CccccccccccChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 258 HERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 258 her~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..+++........ ..++ -..+|+.||+++-...++|.++|+..|.+.|.
T Consensus 182 ---------------------TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 182 ---------------------TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred ---------------------ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 55555543332211 0110 04699999999999999999999999999875
No 288
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4.8e-20 Score=171.68 Aligned_cols=163 Identities=20% Similarity=0.124 Sum_probs=104.5
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------cchhhhhH------------HHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------RRVAAMSV------------AKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------~~i~~~~~------------~~~v 200 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+... ..+++++. .+.+
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i 101 (272)
T PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVV 101 (272)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhhe
Confidence 356777899999999999999999999999999874 55788765321 01222211 1111
Q ss_pred HHH----hcc---c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 201 AEE----FGC---R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 201 ~~~----~~~---~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
... .+. . ....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP------------ 169 (272)
T PRK15056 102 MMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEP------------ 169 (272)
T ss_pred ecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC------------
Confidence 000 000 0 0011222222222222 2467789999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+ ++ -.+||++||+.+....++|.++++ .|++.
T Consensus 170 ---------t~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~ 220 (272)
T PRK15056 170 ---------FTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL 220 (272)
T ss_pred ---------CccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE
Confidence 3333333222211100 00 146999999999998999998777 68774
No 289
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=1.3e-19 Score=186.18 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=108.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--c---------chhh---------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--R---------RVAA---------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--~---------~i~~---------~~~~~~ 199 (350)
..+++...+++|+.++|+|++||||||+++.++++. + .+|+|.+... + .+++ -++.++
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN 442 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN 442 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence 457788899999999999999999999999999998 4 5898876421 0 1111 223333
Q ss_pred HHHHhcccccchhhhhhhc------c-cCC-Ccccc----ccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRF------E-DCT-SSETL----IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~------~-~~~-~~~~~----i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+++....+. . ..+ ..++. -..||||||||++||||++++|+++|||||
T Consensus 443 I~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~---------- 512 (588)
T PRK11174 443 VLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEP---------- 512 (588)
T ss_pred hhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC----------
Confidence 3321110011111111111 1 111 11222 346999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|..-.+....... +-+++|+.||-.++. ..+|.++|+|.|++.+.
T Consensus 513 -----------TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i-~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 513 -----------TASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDL-AQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred -----------ccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHH-HhCCEEEEEeCCeEeec
Confidence 44444443332222111 126899999999765 67999999999998754
No 290
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.79 E-value=1.4e-19 Score=163.59 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=102.0
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-Cc--c----------------hhhhh------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-PR--R----------------VAAMS------ 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-~~--~----------------i~~~~------ 195 (350)
.+++..++.+|++++|+|+|||||||++++++|... +.+|.|.+.. .. . +++++
T Consensus 24 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 102 (224)
T TIGR02324 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVI 102 (224)
T ss_pred EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccC
Confidence 456778899999999999999999999999999974 5588887641 10 1 11111
Q ss_pred ----HHHHHHHH---hccc---ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 196 ----VAKRVAEE---FGCR---LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 196 ----~~~~v~~~---~~~~---~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
+.+.+... .+.. ..+.+...+...+... .+..+..||+||+||++||++++.+|+++|||||
T Consensus 103 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP------ 176 (224)
T TIGR02324 103 PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEP------ 176 (224)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC------
Confidence 11112110 0100 0011122223333322 2456789999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEe
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid 321 (350)
+..+++.........+. . -.+||++||..+....++|.++.+.
T Consensus 177 ---------------t~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 177 ---------------TASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred ---------------cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 33333332221111000 0 1469999999999888999887763
No 291
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.4e-19 Score=165.99 Aligned_cols=167 Identities=17% Similarity=0.195 Sum_probs=106.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC----CCcEEEEcCCc-------------chhh---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT----ARGKIGCTQPR-------------RVAA--------- 193 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~----~~G~i~~~~~~-------------~i~~--------- 193 (350)
..+++...+++|++++|+|+||||||||+++++|...+. .+|+|.+.... .+++
T Consensus 22 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (261)
T PRK14258 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP 101 (261)
T ss_pred EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc
Confidence 346677889999999999999999999999999997532 25766442100 0111
Q ss_pred hhHHHHHHHHh---cc-cc---cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 194 MSVAKRVAEEF---GC-RL---GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 194 ~~~~~~v~~~~---~~-~~---~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.++.+++.... +. .. ...+...+...+.. ..++.+..||+||+||++||++++.+|+++|||||
T Consensus 102 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP---- 177 (261)
T PRK14258 102 MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP---- 177 (261)
T ss_pred ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC----
Confidence 12223332111 10 00 01112222222211 12356678999999999999999999999999999
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcc---ccc--ceeEEEEEecccccccccCCEEEEEeC-----Ceeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAW--RISRVVIATNIAETSLTIDGIFYVVDP-----GFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~--~~~~vi~sT~iae~s~ti~d~~~vid~-----G~~~~ 327 (350)
+..+++........ ... .-++||++||..+....++|.+++++. |++..
T Consensus 178 -----------------~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 178 -----------------CFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred -----------------CccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 33333322211111 000 014699999999999999999999999 88743
No 292
>PLN03073 ABC transporter F family; Provisional
Probab=99.78 E-value=1.4e-19 Score=188.19 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=110.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhH--------HHH----HHHHhccc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSV--------AKR----VAEEFGCR 207 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~--------~~~----v~~~~~~~ 207 (350)
+.+++...+.+|++++|+|+||||||||+++++|... +.+|.|.+....++++.+. ... +...+...
T Consensus 524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~ 602 (718)
T PLN03073 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-PSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGV 602 (718)
T ss_pred eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCC
Confidence 4567888999999999999999999999999999884 5588886532222222211 111 11111111
Q ss_pred ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccce
Q psy9590 208 LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPL 285 (350)
Q Consensus 208 ~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~ 285 (350)
....+...+...+... ....+..|||||+||++||++++.+|++|||||| +..++..
T Consensus 603 ~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEP---------------------T~~LD~~ 661 (718)
T PLN03073 603 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP---------------------SNHLDLD 661 (718)
T ss_pred CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCC---------------------CCCCCHH
Confidence 1122223333333321 2467889999999999999999999999999999 3333332
Q ss_pred eccCCcccccc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 286 YNKYEEPNAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 286 ~~~~~~~~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
........+.. -.+||++||+.+....+||.+++++.|.+.
T Consensus 662 s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 662 AVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 22111110000 025999999999999999999999999874
No 293
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.2e-19 Score=165.83 Aligned_cols=166 Identities=14% Similarity=0.159 Sum_probs=105.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCc------EEEEcC-C----------cchh----------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARG------KIGCTQ-P----------RRVA---------- 192 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G------~i~~~~-~----------~~i~---------- 192 (350)
+.+++...+.+|++++|+|+|||||||+++.+.|...+. +| .+.+.. + ..++
T Consensus 25 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~-~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 103 (257)
T PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY-DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFP 103 (257)
T ss_pred eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-cCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCC
Confidence 456778889999999999999999999999999987443 43 332210 0 0011
Q ss_pred hhhHHHHHHHHh---cccc----cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 193 AMSVAKRVAEEF---GCRL----GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 193 ~~~~~~~v~~~~---~~~~----~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
..++.+++.... +... ...+...++..+.. ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 104 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEP--- 180 (257)
T PRK14246 104 HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP--- 180 (257)
T ss_pred CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC---
Confidence 112233332211 1000 01122222222221 12356778999999999999999999999999999
Q ss_pred ccccccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 261 TIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 261 ~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.++....+.... ..+.-.+||++||..+....++|.+++++.|++..
T Consensus 181 ------------------t~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 181 ------------------TSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVE 232 (257)
T ss_pred ------------------CccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 22222221111100 00001469999999999989999999999998854
No 294
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.5e-19 Score=164.70 Aligned_cols=166 Identities=17% Similarity=0.151 Sum_probs=106.0
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC--C--CCCcEEEEcCCc-------------chhh---------h
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG--F--TARGKIGCTQPR-------------RVAA---------M 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~--~--~~~G~i~~~~~~-------------~i~~---------~ 194 (350)
.+++..++.+|++++|+|+||||||||+++++|... + +.+|+|.+.... .+++ .
T Consensus 19 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~ 98 (250)
T PRK14266 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK 98 (250)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc
Confidence 455677889999999999999999999999999753 2 257877653210 0111 1
Q ss_pred hHHHHHHHHhcc---ccc----chhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 195 SVAKRVAEEFGC---RLG----QEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 195 ~~~~~v~~~~~~---~~~----~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
+..+++...... ... ..+...+...+.. ..++.+..||+||+||++||++++.+|++++||||
T Consensus 99 t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP----- 173 (250)
T PRK14266 99 SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP----- 173 (250)
T ss_pred hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC-----
Confidence 122222211100 000 0111111111111 12356778999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
...++..........+ .+-.+||++||..+....+++.+++++.|.+..
T Consensus 174 ----------------~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~ 225 (250)
T PRK14266 174 ----------------CSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE 225 (250)
T ss_pred ----------------CccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE
Confidence 3333333222111100 011469999999999999999999999998864
No 295
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.78 E-value=1.6e-19 Score=184.00 Aligned_cols=165 Identities=16% Similarity=0.115 Sum_probs=110.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh-----------hhHHHHHHHHhc---
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA-----------MSVAKRVAEEFG--- 205 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~-----------~~~~~~v~~~~~--- 205 (350)
+.+++...+++|++++|+|+||||||||+++++|.. .+.+|.|.+.....+++ .++.+.+.....
T Consensus 337 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 415 (552)
T TIGR03719 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE-QPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQ 415 (552)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccc
Confidence 567788899999999999999999999999999987 45588876532111221 233444432211
Q ss_pred cc-ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcc
Q psy9590 206 CR-LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRL 282 (350)
Q Consensus 206 ~~-~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v 282 (350)
.. ........+...+... .++.+..|||||+||++||++++.+|+++||||| +..+
T Consensus 416 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEP---------------------t~~L 474 (552)
T TIGR03719 416 LGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP---------------------TNDL 474 (552)
T ss_pred cCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCC---------------------CCCC
Confidence 00 0011112233333322 3567889999999999999999999999999999 3333
Q ss_pred cceeccCCcccccce-eEEEEEecccccccccCCEEEEEeC-Ceee
Q psy9590 283 EPLYNKYEEPNAWRI-SRVVIATNIAETSLTIDGIFYVVDP-GFVK 326 (350)
Q Consensus 283 ~~~~~~~~~~~~~~~-~~vi~sT~iae~s~ti~d~~~vid~-G~~~ 326 (350)
++.........+... .+||++||+.+....++|.+++++. |.+.
T Consensus 475 D~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 475 DVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 333322211100000 2599999999999999999999987 5653
No 296
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.2e-19 Score=163.69 Aligned_cols=164 Identities=16% Similarity=0.229 Sum_probs=102.0
Q ss_pred HHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc------CC---------cchhhhh----------HHHH
Q psy9590 145 IKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT------QP---------RRVAAMS----------VAKR 199 (350)
Q Consensus 145 ~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~------~~---------~~i~~~~----------~~~~ 199 (350)
..+.+...+++|.|++||||||+++++.|+.. +..|.|.+. .. |++.+.- +..+
T Consensus 18 ~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTR-PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred eccCCCCceEEEecCCCCChhhHHHHHhccCC-ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence 33455558999999999999999999999985 447766442 11 2333322 2222
Q ss_pred HHHHhcccccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhh
Q psy9590 200 VAEEFGCRLGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKK 278 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~ 278 (350)
+.+.+...........+...+.... ++....||||++||++|+|||+..|++++|||| ++-|... .
T Consensus 97 L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEP----------LaSLD~~---R 163 (352)
T COG4148 97 LRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP----------LASLDLP---R 163 (352)
T ss_pred hhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCc----------hhhcccc---h
Confidence 2222211111222333333333322 355668999999999999999999999999999 1111000 0
Q ss_pred cCcccceeccCCc-ccccceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 279 NQRLEPLYNKYEE-PNAWRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 279 ~~~v~~~~~~~~~-~~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
...+-++...... .++ -|+..||-.++...++|.++|++.|+++
T Consensus 164 K~EilpylERL~~e~~I----PIlYVSHS~~Ev~RLAd~vV~le~GkV~ 208 (352)
T COG4148 164 KREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVK 208 (352)
T ss_pred hhHHHHHHHHHHHhcCC----CEEEEecCHHHHHhhhheEEEecCCeEE
Confidence 0111111111000 012 2899999999999999999999999996
No 297
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.78 E-value=2.1e-19 Score=187.62 Aligned_cols=165 Identities=17% Similarity=0.211 Sum_probs=107.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~~ 199 (350)
..+++...+++|+.++|+|+|||||||+++.++|+.. +.+|+|.+... +.+++. ++.++
T Consensus 468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 546 (686)
T TIGR03797 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET-PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFEN 546 (686)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHH
Confidence 4667888999999999999999999999999999984 56899876421 111111 22333
Q ss_pred HHHHhcccccchhhhhhhcc-------cCC-Ccccc----ccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRFE-------DCT-SSETL----IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~~-------~~~-~~~~~----i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+..... ...+.+....+.. ..+ ..++. -..|||||+||++||||++++|+++|||||
T Consensus 547 i~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEp---------- 615 (686)
T TIGR03797 547 IAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEA---------- 615 (686)
T ss_pred HhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC----------
Confidence 332111 0111111111110 111 11222 247999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccccce-eEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAWRI-SRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|....+...+...+. +++|+.||..++. ..+|.++|+|.|++.+.
T Consensus 616 -----------TS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i-~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 616 -----------TSALDNRTQAIVSESLERLKVTRIVIAHRLSTI-RNADRIYVLDAGRVVQQ 665 (686)
T ss_pred -----------ccCCCHHHHHHHHHHHHHhCCeEEEEecChHHH-HcCCEEEEEECCEEEEE
Confidence 4444433322221111111 5799999999876 56999999999998753
No 298
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.78 E-value=2e-19 Score=183.45 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=111.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh-----------hhHHHHHHHHhc---
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA-----------MSVAKRVAEEFG--- 205 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~-----------~~~~~~v~~~~~--- 205 (350)
+.+++..++++|++++|+|+||||||||+++++|... +.+|+|.+.....+++ .++.+.+.....
T Consensus 339 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 417 (556)
T PRK11819 339 LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-PDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIK 417 (556)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhccccc
Confidence 5678889999999999999999999999999999874 5588886632212222 233333332111
Q ss_pred cc-ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcc
Q psy9590 206 CR-LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRL 282 (350)
Q Consensus 206 ~~-~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v 282 (350)
.. ........+...+... .++.+..|||||+||++||++++.+|+++||||| +..+
T Consensus 418 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP---------------------t~~L 476 (556)
T PRK11819 418 VGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP---------------------TNDL 476 (556)
T ss_pred ccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC---------------------CCCC
Confidence 00 0011112233333322 3567889999999999999999999999999999 3333
Q ss_pred cceeccCCcccccce-eEEEEEecccccccccCCEEEEEeC-Ceee
Q psy9590 283 EPLYNKYEEPNAWRI-SRVVIATNIAETSLTIDGIFYVVDP-GFVK 326 (350)
Q Consensus 283 ~~~~~~~~~~~~~~~-~~vi~sT~iae~s~ti~d~~~vid~-G~~~ 326 (350)
++.........+... .+||++||+.+....+||.+++++. |.+.
T Consensus 477 D~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 477 DVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 333222111100000 2599999999999999999999986 6664
No 299
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.78 E-value=1.4e-19 Score=181.91 Aligned_cols=166 Identities=14% Similarity=0.165 Sum_probs=109.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhhhhHHHHH-------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAAMSVAKRV------- 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~~~~~~~v------- 200 (350)
+.+++...+++|++++|+|+|||||||++++++|..+...+|+|.+... +.+++++.....
T Consensus 275 il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 354 (490)
T PRK10938 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTS 354 (490)
T ss_pred EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCc
Confidence 4677888999999999999999999999999999763224788866321 112222211100
Q ss_pred -HHHh--cc----c--------ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 201 -AEEF--GC----R--------LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 201 -~~~~--~~----~--------~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
.... +. . ..+.+...+...+... .++.+..||+||+||++||++++.+|++||||||
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP------ 428 (490)
T PRK10938 355 VRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEP------ 428 (490)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCc------
Confidence 0000 00 0 0011222233333332 3467889999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCcccc---c--ceeEEEEEecccccccc-cCCEEEEEeCCeee
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---W--RISRVVIATNIAETSLT-IDGIFYVVDPGFVK 326 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~--~~~~vi~sT~iae~s~t-i~d~~~vid~G~~~ 326 (350)
+..+++.........+ + +..+||++||+.+.... ++|++++++.|++.
T Consensus 429 ---------------t~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 429 ---------------LQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIY 482 (490)
T ss_pred ---------------cccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceE
Confidence 4455544333222111 1 11349999999999987 69999999999864
No 300
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3e-19 Score=165.65 Aligned_cols=167 Identities=17% Similarity=0.222 Sum_probs=107.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC-C---CCcEEEEcC-C--------------cchhhh------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF-T---ARGKIGCTQ-P--------------RRVAAM------ 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~-~---~~G~i~~~~-~--------------~~i~~~------ 194 (350)
+.+++..++++|++++|+|+||||||||+++++|...+ + .+|+|.+.. + +.+++.
T Consensus 31 vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 110 (265)
T PRK14252 31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNP 110 (265)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcC
Confidence 45667778999999999999999999999999998743 1 578876531 0 011111
Q ss_pred ---hHHHHHHHHh---cccc----cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 195 ---SVAKRVAEEF---GCRL----GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 195 ---~~~~~v~~~~---~~~~----~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
++.+++.... +... .+.+...+...+.. ..+..+..||+||+||++||++++.+|+++|||||
T Consensus 111 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP-- 188 (265)
T PRK14252 111 FPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEP-- 188 (265)
T ss_pred CcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC--
Confidence 2222222111 0000 01111122222211 12356778999999999999999999999999999
Q ss_pred cccccccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 260 RTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 260 r~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++....+.....+ .+-++||++||..+....++|.+++++.|.+..
T Consensus 189 -------------------t~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 189 -------------------TSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred -------------------CccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 3333322221111100 001469999999999999999999999999854
No 301
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.78 E-value=2.9e-19 Score=187.32 Aligned_cols=166 Identities=19% Similarity=0.145 Sum_probs=106.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~~ 199 (350)
+.+++..++++|+.++|+|+|||||||+++.++|+.. +.+|+|.+..- +.+++. ++.++
T Consensus 494 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eN 572 (710)
T TIGR03796 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDN 572 (710)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHH
Confidence 4677889999999999999999999999999999984 56899876421 111111 22233
Q ss_pred HHHHhcccccchhhhhhh------cc-cCC-Ccccc----ccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIR------FE-DCT-SSETL----IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~------~~-~~~-~~~~~----i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+.+....+ +. ..+ ..++. -..|||||+||++||||++++|+++|||||
T Consensus 573 i~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEp---------- 642 (710)
T TIGR03796 573 LTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEA---------- 642 (710)
T ss_pred hhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECc----------
Confidence 321100000111111111 00 111 11222 347999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccccc-ceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAW-RISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~-~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|....+...+... .-+++|+.||-.++. ..+|.++|+|.|++.+.
T Consensus 643 -----------tS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i-~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 643 -----------TSALDPETEKIIDDNLRRRGCTCIIVAHRLSTI-RDCDEIIVLERGKVVQR 692 (710)
T ss_pred -----------cccCCHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEeCCEEEEe
Confidence 33333322221111100 015799999999875 56999999999998653
No 302
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.78 E-value=1.1e-19 Score=203.13 Aligned_cols=166 Identities=13% Similarity=0.134 Sum_probs=116.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchhh----------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVAA----------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~~----------~~~~~~ 199 (350)
+.+++...+++|++++|+|+|||||||++++++|+.. +++|+|.+... +.+++ ++..+.
T Consensus 1954 aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~ 2032 (2272)
T TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREH 2032 (2272)
T ss_pred EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHH
Confidence 5677888999999999999999999999999999984 55888866321 01111 122222
Q ss_pred HH---HHhcccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 200 VA---EEFGCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 200 v~---~~~~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+. ...+... .+.+...++..+... .++++..||||||||+++|+||+.+|++|+||||
T Consensus 2033 L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEP--------------- 2097 (2272)
T TIGR01257 2033 LYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEP--------------- 2097 (2272)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC---------------
Confidence 22 1122111 111222233333322 3477889999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCcccccc----eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNAWR----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+.++|+...+.....+.+ -++||++||++|+...+||++++++.|+.+.
T Consensus 2098 ------TsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~ 2150 (2272)
T TIGR01257 2098 ------TTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQC 2150 (2272)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 666666555443321111 1579999999999999999999999998753
No 303
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.77 E-value=2.8e-19 Score=176.59 Aligned_cols=169 Identities=15% Similarity=0.106 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-chh------------------------
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-RVA------------------------ 192 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-~i~------------------------ 192 (350)
..+.+++.+++.+||+++|+|++||||||+.+.++++..+ .+|.|.+.... .+.
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence 4567889999999999999999999999999999999854 68888764321 000
Q ss_pred hhhHHHHHHHHhccc-------ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 193 AMSVAKRVAEEFGCR-------LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 193 ~~~~~~~v~~~~~~~-------~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
..++...+++.+... ..+.+...+...+... .++...+|||||+||++|||||+.+|++||+|||
T Consensus 383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp------ 456 (539)
T COG1123 383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEP------ 456 (539)
T ss_pred cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCC------
Confidence 001112222211110 0112333333333332 2356678999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCcccccc----e-eEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR----I-SRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~----~-~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
.--+|+.......+-+.+ . -+.++-||++...-.+||+++|++.|++.+.
T Consensus 457 ---------------~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 457 ---------------VSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred ---------------ccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe
Confidence 222222221111100000 0 3589999999999999999999999999765
No 304
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.77 E-value=3.7e-19 Score=186.07 Aligned_cols=166 Identities=15% Similarity=0.154 Sum_probs=108.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhh---------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAA---------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~---------~~~~~~ 199 (350)
..+++...+++|+.++|+|+|||||||+++.++|+.. +.+|+|.+..- +.+++ -++.++
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eN 558 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN 558 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHH
Confidence 4677889999999999999999999999999999984 55898876421 11111 122333
Q ss_pred HHHHhcccccchhhhhhh------cc-cCC-Cccc----cccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIR------FE-DCT-SSET----LIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~------~~-~~~-~~~~----~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+++....+ +. ..+ ..++ .-..|||||+||++||||++.+|+++|||||
T Consensus 559 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~---------- 628 (694)
T TIGR03375 559 IALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEP---------- 628 (694)
T ss_pred HhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC----------
Confidence 332111000111111111 00 111 1122 2347999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccccc---eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAWR---ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|....+...+...+ -+++|+.||..++. ..+|.++|+|.|.+.+.
T Consensus 629 -----------Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~-~~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 629 -----------TSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-DLVDRIIVMDNGRIVAD 680 (694)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhCCEEEEEeCCEEEee
Confidence 445554433322221111 26799999999865 78999999999998653
No 305
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.77 E-value=2.1e-19 Score=185.84 Aligned_cols=165 Identities=20% Similarity=0.178 Sum_probs=111.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhh-----------hHHHHHHHHhc-cc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAM-----------SVAKRVAEEFG-CR 207 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~-----------~~~~~v~~~~~-~~ 207 (350)
+.+++...+.+|++++|+|+||||||||+++++|.. .+.+|.|.+.....++++ ++.+.+..... ..
T Consensus 334 il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~ 412 (635)
T PRK11147 334 LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVM 412 (635)
T ss_pred EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhccccc
Confidence 456788899999999999999999999999999987 455888866322122222 33333332110 00
Q ss_pred -c--cchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcc
Q psy9590 208 -L--GQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRL 282 (350)
Q Consensus 208 -~--~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v 282 (350)
. ...+...+...... ..++.+..|||||+||++||++++.+|++|||||| +..+
T Consensus 413 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEP---------------------t~~L 471 (635)
T PRK11147 413 VNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEP---------------------TNDL 471 (635)
T ss_pred ccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCC---------------------CCCC
Confidence 0 11122222222222 13577889999999999999999999999999999 3334
Q ss_pred cceeccCCcccccc-eeEEEEEecccccccccCCEEEEEe-CCeee
Q psy9590 283 EPLYNKYEEPNAWR-ISRVVIATNIAETSLTIDGIFYVVD-PGFVK 326 (350)
Q Consensus 283 ~~~~~~~~~~~~~~-~~~vi~sT~iae~s~ti~d~~~vid-~G~~~ 326 (350)
++.........+.. -.+||++||+.+....++|.+++++ .|.+.
T Consensus 472 D~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~ 517 (635)
T PRK11147 472 DVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIG 517 (635)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEE
Confidence 33322211110000 0359999999999999999999997 79874
No 306
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.77 E-value=4.7e-19 Score=185.47 Aligned_cols=166 Identities=18% Similarity=0.190 Sum_probs=107.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchh---------hhhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVA---------AMSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~---------~~~~~~~ 199 (350)
..+++..++++|+.++|+|+|||||||+++.++++.. +.+|+|.+... +.++ ..++.++
T Consensus 496 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreN 574 (711)
T TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ-PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVREN 574 (711)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHH
Confidence 4678899999999999999999999999999999984 55899876421 0111 1223333
Q ss_pred HHHHhcccccchhhhhhh------ccc-CC-Cccc----cccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIR------FED-CT-SSET----LIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~------~~~-~~-~~~~----~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+.+....+ +.. .+ ..++ .-..|||||+||++||||++++|+++|||||
T Consensus 575 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEp---------- 644 (711)
T TIGR00958 575 IAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEA---------- 644 (711)
T ss_pred HhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEcc----------
Confidence 332111000111111111 100 10 1122 2347999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccc-ccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPN-AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~-~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|....+...+. ..+-+++|+.||..++. ..+|.++|+|.|++.+.
T Consensus 645 -----------TSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i-~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 645 -----------TSALDAECEQLLQESRSRASRTVLLIAHRLSTV-ERADQILVLKKGSVVEM 694 (711)
T ss_pred -----------ccccCHHHHHHHHHhhccCCCeEEEEeccHHHH-HhCCEEEEEECCEEEEe
Confidence 333333221111110 01126799999999875 67999999999998754
No 307
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=2.6e-19 Score=159.44 Aligned_cols=167 Identities=13% Similarity=0.149 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhhhhHHHHHHHHhc
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAAMSVAKRVAEEFG 205 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~~~~~~~v~~~~~ 205 (350)
..+.++|.+++.+|+.+||+|+||||||||++.+.|.. .|++|++.+... ..++.+......+..+|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-KPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-CCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 34577899999999999999999999999999999999 466898877421 12233333344444454
Q ss_pred cc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCc
Q psy9590 206 CR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQR 281 (350)
Q Consensus 206 ~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~ 281 (350)
.. ..+.+...++|....+ .+.+++.+|.||+.|++++-+...+|++||+||. + --
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEv----------l-----------av 177 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV----------L-----------AV 177 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh----------h-----------hc
Confidence 42 2233444455544433 3578899999999999999999999999999998 1 11
Q ss_pred ccceeccCCcc---cc-cceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 282 LEPLYNKYEEP---NA-WRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 282 v~~~~~~~~~~---~~-~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
-+..|.+.... +. .+-++||++||+.+..-.+||....++.|.++
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~ 226 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIR 226 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEE
Confidence 11111110000 00 01157999999999999999999999999884
No 308
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.1e-19 Score=168.00 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=105.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCC-------------cchhhh--------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQP-------------RRVAAM-------- 194 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~-------------~~i~~~-------- 194 (350)
+.+++..++.+|++++|+|+||||||||+++++|...+ +.+|+|.+... +.++++
T Consensus 60 iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 139 (305)
T PRK14264 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP 139 (305)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc
Confidence 46677788999999999999999999999999998742 46788765321 011111
Q ss_pred -hHHHHHHHHhc---------------cc----ccchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCC
Q psy9590 195 -SVAKRVAEEFG---------------CR----LGQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNY 249 (350)
Q Consensus 195 -~~~~~v~~~~~---------------~~----~~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~ 249 (350)
++.+++..... .. ....+...++..+.. ..+..+..||+||+||++||++|+.+|
T Consensus 140 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p 219 (305)
T PRK14264 140 KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDP 219 (305)
T ss_pred ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCC
Confidence 12222221100 00 000111111111111 113556789999999999999999999
Q ss_pred cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEE-EEEeCCee
Q psy9590 250 SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIF-YVVDPGFV 325 (350)
Q Consensus 250 ~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~-~vid~G~~ 325 (350)
++|||||| ...++......... ..++-.+||++||..+....++|.+ ++++.|++
T Consensus 220 ~lLLLDEP---------------------tsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 220 EVILMDEP---------------------ASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred CEEEEeCC---------------------cccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 99999999 33333322221111 0001146999999999999999986 56799998
Q ss_pred ee
Q psy9590 326 KQ 327 (350)
Q Consensus 326 ~~ 327 (350)
..
T Consensus 279 ~~ 280 (305)
T PRK14264 279 VE 280 (305)
T ss_pred EE
Confidence 53
No 309
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=4.3e-19 Score=158.65 Aligned_cols=157 Identities=19% Similarity=0.144 Sum_probs=97.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--------chh----------hhhHHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--------RVA----------AMSVAKRVA 201 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--------~i~----------~~~~~~~v~ 201 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .+. ..++.+++.
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~ 95 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLE 95 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHH
Confidence 3566778899999999999999999999999999874 558888663210 011 112222222
Q ss_pred HHhcc--cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhh
Q psy9590 202 EEFGC--RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKK 278 (350)
Q Consensus 202 ~~~~~--~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~ 278 (350)
..... .....+...+...+... .+..+..||+||+||++||++++.+|+++|||||
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP--------------------- 154 (207)
T PRK13539 96 FWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP--------------------- 154 (207)
T ss_pred HHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC---------------------
Confidence 11000 00111222222222221 2456779999999999999999999999999999
Q ss_pred cCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEE
Q psy9590 279 NQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVV 320 (350)
Q Consensus 279 ~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vi 320 (350)
+..+++.........+. .-.+||++||..+.... |.++-+
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~ 198 (207)
T PRK13539 155 TAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDL 198 (207)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEee
Confidence 33343332222111000 01469999999987655 555444
No 310
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.77 E-value=3.8e-19 Score=174.46 Aligned_cols=177 Identities=16% Similarity=0.080 Sum_probs=120.9
Q ss_pred HHhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC--------------------
Q psy9590 128 IVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------------------- 187 (350)
Q Consensus 128 i~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------------------- 187 (350)
+....+++|-..+.+++..++.+|++++|+|+||||||||+|.+.|.+. +++|+|.+..
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-PDSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-CCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 3345578888888999999999999999999999999999999999995 6688886641
Q ss_pred --CcchhhhhHHHHHHHHhcccc--c--------chhhhhhhcccC-CCccccccccChhHHHHHHHHhhcCCCCcEEEE
Q psy9590 188 --PRRVAAMSVAKRVAEEFGCRL--G--------QEVGYTIRFEDC-TSSETLIKYMTDGMLLRECLVDLDLNNYSVIML 254 (350)
Q Consensus 188 --~~~i~~~~~~~~v~~~~~~~~--~--------~~v~~~~~~~~~-~~~~~~i~~lS~G~~qr~~ia~all~~~~viIl 254 (350)
..-+..+++++++.-...... + ......+..... ...++++..||.|++|.+.||+|+..++++|||
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIl 169 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLIL 169 (500)
T ss_pred echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111223344444431110000 0 011111221111 236688999999999999999999999999999
Q ss_pred cCCCccccccccccChhHHHhhhhcCcccceeccCCcccccc----eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 255 DEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR----ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 255 DEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~----~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
||| +-.+...-.+.......+ =..||+-||-+++...|||++.|+.+|+.-
T Consensus 170 DEP---------------------TaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v 224 (500)
T COG1129 170 DEP---------------------TAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224 (500)
T ss_pred cCC---------------------cccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEe
Confidence 999 222211111000000000 046999999999999999999999999874
No 311
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.77 E-value=4.5e-19 Score=181.49 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=108.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--c---------chhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--R---------RVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--~---------~i~~~---------~~~~~ 199 (350)
..+++..++++|+.++|+|+|||||||+++.++++.. +.+|+|.+... + .+++. +..++
T Consensus 355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 433 (574)
T PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDN 433 (574)
T ss_pred ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHH
Confidence 4678889999999999999999999999999999984 55898876421 0 11111 22233
Q ss_pred HHHHhcccccchhhhhhhc------ccCC-Cccc----cccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRF------EDCT-SSET----LIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~------~~~~-~~~~----~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.........+.+...++. ...+ ..++ ....|||||+||++|||+++.+|+++|||||
T Consensus 434 i~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~----------- 502 (574)
T PRK11160 434 LLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEP----------- 502 (574)
T ss_pred hhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-----------
Confidence 3211110111122211111 1111 1123 3447999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|....+...+... +-+++|+.||..++. ..+|.++++|.|++.+.
T Consensus 503 ----------ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~-~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 503 ----------TEGLDAETERQILELLAEHAQNKTVLMITHRLTGL-EQFDRICVMDNGQIIEQ 554 (574)
T ss_pred ----------cccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHH-HhCCEEEEEeCCeEEEe
Confidence 44444433322211111 126799999999876 56999999999998754
No 312
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.5e-19 Score=173.54 Aligned_cols=166 Identities=19% Similarity=0.228 Sum_probs=109.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--cchh------------------hhhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--RRVA------------------AMSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--~~i~------------------~~~~~~~ 199 (350)
...++..++++|+.++|+|+|||||||++..++|+.+ ++.|+|.+..- +.+. .-+..++
T Consensus 336 ~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~-~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN 414 (559)
T COG4988 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA-PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN 414 (559)
T ss_pred ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC-CCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH
Confidence 4567888999999999999999999999999999984 56899877421 1111 1122233
Q ss_pred HHHHhcccccchhhhh------hhcccC-CCcccccc----ccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYT------IRFEDC-TSSETLIK----YMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~------~~~~~~-~~~~~~i~----~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.........+++... .++.+. ...++.+. .|||||+||+++|||++++++++++|||
T Consensus 415 i~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEp----------- 483 (559)
T COG4988 415 ILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEP----------- 483 (559)
T ss_pred hhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCC-----------
Confidence 3211110001111111 112221 11233443 5999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|..-....... ..+-++|++.||-.+.... +|.++|+|.|++.+.
T Consensus 484 ----------TA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~ 535 (559)
T COG4988 484 ----------TAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQ 535 (559)
T ss_pred ----------ccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceecc
Confidence 555554333222211 1123789999999998866 699999999998654
No 313
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.77 E-value=4.3e-19 Score=159.84 Aligned_cols=160 Identities=15% Similarity=0.146 Sum_probs=99.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------------cchhhh---------h
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------------RRVAAM---------S 195 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------------~~i~~~---------~ 195 (350)
+.+++...+++|++++|+|+|||||||++++++|... +.+|.|.+... +.+++. +
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t 94 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNAT 94 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCcccccccccccchhhcceEEEEcCCCcccccc
Confidence 3556777899999999999999999999999999974 45787766321 011111 1
Q ss_pred HHHHHHHHhcccccchhhhhhhcccC------C------CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 196 VAKRVAEEFGCRLGQEVGYTIRFEDC------T------SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 196 ~~~~v~~~~~~~~~~~v~~~~~~~~~------~------~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
..+++....... ...........+. . .....+..||+||+||++||++++.+|+++|||||
T Consensus 95 ~~~nl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP------ 167 (218)
T cd03290 95 VEENITFGSPFN-KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDP------ 167 (218)
T ss_pred HHHHHhhcCcCC-HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC------
Confidence 112222110000 0001111111100 0 01245678999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCcc-----cccc-eeEEEEEecccccccccCCEEEEEeCC
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEP-----NAWR-ISRVVIATNIAETSLTIDGIFYVVDPG 323 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~-----~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G 323 (350)
+..+++...+.... ...+ -.+||++||..+.. ..+|.+++++.|
T Consensus 168 ---------------t~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~-~~~d~i~~l~~G 217 (218)
T cd03290 168 ---------------FSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL-PHADWIIAMKDG 217 (218)
T ss_pred ---------------ccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-hhCCEEEEecCC
Confidence 33333322111100 0000 14699999999986 679999999987
No 314
>PRK13409 putative ATPase RIL; Provisional
Probab=99.77 E-value=5.9e-19 Score=180.28 Aligned_cols=159 Identities=13% Similarity=0.051 Sum_probs=106.4
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc-------CC-cchhhhhHHHHHHHHhcc-cccchh
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT-------QP-RRVAAMSVAKRVAEEFGC-RLGQEV 212 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~-------~~-~~i~~~~~~~~v~~~~~~-~~~~~v 212 (350)
+.+..++.+|++++|+|+||||||||+++++|... +.+|.|.+. |. ......++.+.+...... .....+
T Consensus 356 ~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 434 (590)
T PRK13409 356 EVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-PDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYK 434 (590)
T ss_pred EecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHH
Confidence 34566789999999999999999999999999984 558887542 11 111223444444322110 001112
Q ss_pred hhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCc
Q psy9590 213 GYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEE 291 (350)
Q Consensus 213 ~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~ 291 (350)
...+...+... .++.+..|||||+||++||++|+.+|++|||||| +..++........
T Consensus 435 ~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEP---------------------t~~LD~~~~~~l~ 493 (590)
T PRK13409 435 SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEP---------------------SAHLDVEQRLAVA 493 (590)
T ss_pred HHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC---------------------ccCCCHHHHHHHH
Confidence 22233333322 3577889999999999999999999999999999 4444444332221
Q ss_pred cccc---c--eeEEEEEecccccccccCCEEEEEeC
Q psy9590 292 PNAW---R--ISRVVIATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 292 ~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~ 322 (350)
..+. + -.+||++||+.+....++|.+++++.
T Consensus 494 ~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 494 KAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 1110 0 14699999999999999999999975
No 315
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.76 E-value=6.4e-19 Score=180.76 Aligned_cols=166 Identities=16% Similarity=0.201 Sum_probs=107.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~~ 199 (350)
..+++...+++|+.++|+|+|||||||+++.++|+.. +.+|+|.+... +.++++ ++.++
T Consensus 358 il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 436 (582)
T PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD-IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN 436 (582)
T ss_pred cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC-CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHH
Confidence 4667888999999999999999999999999999984 56899877421 111121 12233
Q ss_pred HHHHhcc-cccchhhhhhhc-------ccCC-Cccccc----cccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 200 VAEEFGC-RLGQEVGYTIRF-------EDCT-SSETLI----KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 200 v~~~~~~-~~~~~v~~~~~~-------~~~~-~~~~~i----~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
+...... ...+.+....+. ...+ ..++.+ ..|||||+||++|||+++++|+++|||||
T Consensus 437 i~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEp--------- 507 (582)
T PRK11176 437 IAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEA--------- 507 (582)
T ss_pred HhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECc---------
Confidence 3211100 011111111111 0010 112222 46999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcccccc---eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNAWR---ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|+...........+ -++||+.||..+. +..+|.++++|.|.+.+.
T Consensus 508 ------------tsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~-~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 508 ------------TSALDTESERAIQAALDELQKNRTSLVIAHRLST-IEKADEILVVEDGEIVER 559 (582)
T ss_pred ------------cccCCHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEEEEEECCEEEEe
Confidence 444444333222211111 1679999999975 577999999999998654
No 316
>KOG0055|consensus
Probab=99.76 E-value=6.8e-19 Score=185.79 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc--------------------CCcchhhhh
Q psy9590 136 PIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT--------------------QPRRVAAMS 195 (350)
Q Consensus 136 pi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~--------------------~~~~i~~~~ 195 (350)
|-..+.+++...++.|+.++|+||+||||||.+.++-.++. +.+|.|.+. |...+...+
T Consensus 1001 P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd-p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~T 1079 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD-PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGT 1079 (1228)
T ss_pred CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCcccccCCHHHHHHhcceeccCchhhccc
Confidence 44566788899999999999999999999999999999884 458888663 222333334
Q ss_pred HHHHHHHHhcccccchhhhhhh------ccc-CC-Ccccc----ccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 196 VAKRVAEEFGCRLGQEVGYTIR------FED-CT-SSETL----IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 196 ~~~~v~~~~~~~~~~~v~~~~~------~~~-~~-~~~~~----i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
..++++.....-..+++....+ |.. .+ ..+|. -.+|||||+||++||||++.||++|+|||+
T Consensus 1080 IrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEA------ 1153 (1228)
T KOG0055|consen 1080 IRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEA------ 1153 (1228)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeecc------
Confidence 4455554311101112211111 111 11 12233 459999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|....+...+ ..+.-|++|+-+|=+.|. .-+|.++|+++|++.|.
T Consensus 1154 ---------------TSALDseSErvVQeALd~a~~gRT~IvIAHRLSTI-qnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1154 ---------------TSALDSESERVVQEALDRAMEGRTTIVIAHRLSTI-QNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred ---------------chhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhh-hcCCEEEEEECCEEEec
Confidence 44444333322221 122227889999988876 66899999999999876
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.76 E-value=5.6e-19 Score=197.60 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=114.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchh----------hhhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVA----------AMSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~----------~~~~~~~ 199 (350)
+.+++...+.+|++++|+|+|||||||++++++|+.. +++|+|.+... +.++ .+++.+.
T Consensus 945 aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~ 1023 (2272)
T TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEH 1023 (2272)
T ss_pred EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHH
Confidence 4567888999999999999999999999999999984 55888865321 0011 1223333
Q ss_pred HHHH---hccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 200 VAEE---FGCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 200 v~~~---~~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+... .+.. ..+.+...++..+... .++.+..||||||||++||+||+.+|++||||||
T Consensus 1024 L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEP--------------- 1088 (2272)
T TIGR01257 1024 ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEP--------------- 1088 (2272)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC---------------
Confidence 3221 1111 0112333333333332 2467889999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+|+...+....-+. +-++||++||+++....++|++++++.|+++.
T Consensus 1089 ------TSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~ 1140 (2272)
T TIGR01257 1089 ------TSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC 1140 (2272)
T ss_pred ------CcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 55555444332221110 11579999999999999999999999998853
No 318
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.76 E-value=7.6e-19 Score=156.41 Aligned_cols=165 Identities=16% Similarity=0.168 Sum_probs=107.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------cchhhhhHH--HHHHHH--
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------RRVAAMSVA--KRVAEE-- 203 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------~~i~~~~~~--~~v~~~-- 203 (350)
+.++|.=++++||-++|+|+||||||||++.+.+.. ++.+|.+.+... +++...+.. .++...
T Consensus 46 iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~-~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~ 124 (257)
T COG1119 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH-PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRET 124 (257)
T ss_pred eccccceeecCCCcEEEECCCCCCHHHHHHHHhccc-CCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccc
Confidence 456778889999999999999999999999999998 454777655321 112222211 000000
Q ss_pred ------------hccc-------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 204 ------------FGCR-------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 204 ------------~~~~-------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
.|.. ....+...++...... .++...+||.||+||++|||||+.+|.++|||||
T Consensus 125 v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP------ 198 (257)
T COG1119 125 VRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEP------ 198 (257)
T ss_pred cceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCc------
Confidence 0000 0011122223333332 3467789999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCccccc------ceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW------RISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~------~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
..+++...+....+... .-..+|+.||.+|+..-.-+.+..++.|++.
T Consensus 199 ---------------~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 199 ---------------AQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred ---------------cccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee
Confidence 33333333211100000 1145999999999999988999999999874
No 319
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=8.4e-19 Score=147.36 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=114.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhh---HHHHHHHHhccc--ccchhhh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS---VAKRVAEEFGCR--LGQEVGY 214 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~---~~~~v~~~~~~~--~~~~v~~ 214 (350)
+.++|..++.+|+.++|+||+||||||++++++.+.. +++|.+.+. +..+.... ...++++....+ +++.|..
T Consensus 18 il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-p~~G~l~f~-Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeD 95 (223)
T COG4619 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-PTSGTLLFE-GEDVSTLKPEAYRQQVSYCAQTPALFGDTVED 95 (223)
T ss_pred eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-CCCceEEEc-CccccccChHHHHHHHHHHHcCccccccchhh
Confidence 4567888999999999999999999999999999984 558999884 33332222 224444443322 3333322
Q ss_pred hhhc--------------------ccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 215 TIRF--------------------EDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 215 ~~~~--------------------~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
.+-| .+... ..+.+..||||++||++|+|.|..-|++++|||+
T Consensus 96 NlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~--------------- 160 (223)
T COG4619 96 NLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI--------------- 160 (223)
T ss_pred ccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc---------------
Confidence 2111 11111 2356779999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCccccc-----ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNAW-----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~~-----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.+++.-.+..+..+. +-+.|+.-||+-+.+..+++.++-+-.|+.-+
T Consensus 161 ------TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 161 ------TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred ------hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 44444433222211110 11568999999999999999999999987743
No 320
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.2e-18 Score=148.84 Aligned_cols=139 Identities=20% Similarity=0.250 Sum_probs=96.7
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhccc
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFED 220 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~ 220 (350)
.+++...+.+|++++|+|+|||||||+++++.+... +..|++.+... .+...... ... ..+++..
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~~~~~-~~~--------~~i~~~~---- 79 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAKLPLE-ELR--------RRIGYVP---- 79 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-EcccCCHH-HHH--------hceEEEe----
Confidence 444566788999999999999999999999999884 56899987432 22211100 000 0111111
Q ss_pred CCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccc---cc-
Q psy9590 221 CTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR- 296 (350)
Q Consensus 221 ~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~- 296 (350)
+||+||+||++++++++.+|+++++||| ...++..........+ ..
T Consensus 80 ---------qlS~G~~~r~~l~~~l~~~~~i~ilDEp---------------------~~~lD~~~~~~l~~~l~~~~~~ 129 (157)
T cd00267 80 ---------QLSGGQRQRVALARALLLNPDLLLLDEP---------------------TSGLDPASRERLLELLRELAEE 129 (157)
T ss_pred ---------eCCHHHHHHHHHHHHHhcCCCEEEEeCC---------------------CcCCCHHHHHHHHHHHHHHHHC
Confidence 1999999999999999999999999999 3333322211111100 00
Q ss_pred eeEEEEEecccccccccCCEEEEEeCCe
Q psy9590 297 ISRVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 297 ~~~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
-++++++||..+....++|.+++++.|+
T Consensus 130 ~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 130 GRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 1469999999999999999999999874
No 321
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.76 E-value=6.3e-19 Score=164.70 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=102.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------CcchhhhhHHHHHHHHhcccc---c
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------PRRVAAMSVAKRVAEEFGCRL---G 209 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~~~i~~~~~~~~v~~~~~~~~---~ 209 (350)
+.+++...+.+|++++|+|+||||||||+++++|... +.+|+|.+.. ...+...++.+++........ .
T Consensus 52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~ 130 (282)
T cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE-PSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYK 130 (282)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHH
Confidence 4567778899999999999999999999999999874 5578775421 111111233333321100000 0
Q ss_pred ---ch--hhhhhhc-ccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCc
Q psy9590 210 ---QE--VGYTIRF-EDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQR 281 (350)
Q Consensus 210 ---~~--v~~~~~~-~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~ 281 (350)
.. +...+.. .... ........||+||+||++||++++.+|+++||||| +..
T Consensus 131 ~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEP---------------------t~g 189 (282)
T cd03291 131 SVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP---------------------FGY 189 (282)
T ss_pred HHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECC---------------------Ccc
Confidence 00 0000000 0000 11133568999999999999999999999999999 223
Q ss_pred ccceeccCCcc----cccceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 282 LEPLYNKYEEP----NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 282 v~~~~~~~~~~----~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+++........ ....-.+||++||..+.. ..+|.+++++.|.+.
T Consensus 190 LD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~-~~~d~i~~l~~G~i~ 237 (282)
T cd03291 190 LDVFTEKEIFESCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSY 237 (282)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHH-HhCCEEEEEECCEEE
Confidence 33222111100 000014699999999986 689999999999975
No 322
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.76 E-value=9.7e-19 Score=161.23 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=99.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE----------cCCcchhhhhH--------------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC----------TQPRRVAAMSV-------------- 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~----------~~~~~i~~~~~-------------- 196 (350)
.+++. .+++|++++|+|+|||||||++++++|... +++|+|.. .....+.....
T Consensus 17 l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 94 (255)
T cd03236 17 LHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQ 94 (255)
T ss_pred hhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecc
Confidence 44565 589999999999999999999999999984 55898851 11111110000
Q ss_pred ---------HHHHHHHhcc-cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 197 ---------AKRVAEEFGC-RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 197 ---------~~~v~~~~~~-~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
...+...... .....+...+...+... .+..+..||+||+||+.||++++.+|+++|+|||
T Consensus 95 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP-------- 166 (255)
T cd03236 95 YVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEP-------- 166 (255)
T ss_pred hhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC--------
Confidence 0000000000 00011112222222222 2466779999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCcc---cccc-eeEEEEEecccccccccCCEEEEEeCC
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-ISRVVIATNIAETSLTIDGIFYVVDPG 323 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G 323 (350)
+..+++........ ...+ -++||++||..+....++|.+++++.+
T Consensus 167 -------------ts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~ 215 (255)
T cd03236 167 -------------SSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGE 215 (255)
T ss_pred -------------CCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCC
Confidence 33333332111100 0000 146999999999998899999999864
No 323
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.76 E-value=8.5e-19 Score=183.70 Aligned_cols=166 Identities=16% Similarity=0.144 Sum_probs=107.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhh---------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAA---------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~---------~~~~~~ 199 (350)
+.+++..++++|+.++|+|+|||||||+++.++|+.. +.+|+|.+..- +.+++ -++.++
T Consensus 489 iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 567 (708)
T TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ-ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN 567 (708)
T ss_pred ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence 4678888999999999999999999999999999984 56899877421 01111 122333
Q ss_pred HHHHh-cccccchhhhhhhc------c-cCC-Cccc----cccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 200 VAEEF-GCRLGQEVGYTIRF------E-DCT-SSET----LIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 200 v~~~~-~~~~~~~v~~~~~~------~-~~~-~~~~----~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
+.... .....+.+....+. . ..+ ..++ .-..|||||+||++||||++++|+++|||||
T Consensus 568 i~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~--------- 638 (708)
T TIGR01193 568 LLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDES--------- 638 (708)
T ss_pred HhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCc---------
Confidence 33210 00001111111111 0 111 1122 2347999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcccccc--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|....+.......+ -+++|+.||..++. ..+|.++|+|.|++.+.
T Consensus 639 ------------Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~-~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 639 ------------TSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVA-KQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred ------------cccCCHHHHHHHHHHHHHhcCCEEEEEecchHHH-HcCCEEEEEECCEEEEE
Confidence 334433322211111111 15799999999865 77999999999998653
No 324
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.76 E-value=4.6e-19 Score=163.70 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=102.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhhhHH-----HHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAMSVA-----KRVAEE 203 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~~~~-----~~v~~~ 203 (350)
+.+++...+++|++++|+|+|||||||++++++|.. .+.+|+|.+... +.+++.... ..+...
T Consensus 36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~n 114 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV-DIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN 114 (257)
T ss_pred ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-CCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHh
Confidence 356677789999999999999999999999999987 456888876321 011111100 001111
Q ss_pred hccc--c-cchhhhhhhc------ccCC------CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 204 FGCR--L-GQEVGYTIRF------EDCT------SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 204 ~~~~--~-~~~v~~~~~~------~~~~------~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
.... . ...+...... .+.. ........||+||+||++||++++.+|+++|||||
T Consensus 115 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP----------- 183 (257)
T cd03288 115 LDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEA----------- 183 (257)
T ss_pred cCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCC-----------
Confidence 1000 0 0001111000 0000 01234568999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ....-.+||++||..+.... +|.+++++.|++..
T Consensus 184 ----------t~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~ 234 (257)
T cd03288 184 ----------TASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVE 234 (257)
T ss_pred ----------ccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEE
Confidence 33333322111100 00001469999999998865 99999999999864
No 325
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.76 E-value=9.6e-19 Score=179.41 Aligned_cols=165 Identities=16% Similarity=0.110 Sum_probs=106.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------------------cchhhhhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------------------RRVAAMSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------------------~~i~~~~~~~~ 199 (350)
..+++..++++|+.++|+|+|||||||+++.++|... +.+|+|.+... ..+...+..++
T Consensus 350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 428 (585)
T TIGR01192 350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD-PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIREN 428 (585)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC-CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHH
Confidence 4677888999999999999999999999999999984 56888866321 01111122233
Q ss_pred HHHHhcccccchhhhhhh-------cccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIR-------FEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~-------~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+++....+ ..... ........|||||+||++|||+++.+|+++|||||
T Consensus 429 i~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEp---------- 498 (585)
T TIGR01192 429 IRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEA---------- 498 (585)
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC----------
Confidence 322100000011111000 00110 11233457999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.+|....+....... +-++||+.||..++. ..+|.++++|.|.+.+
T Consensus 499 -----------ts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~-~~~d~i~~l~~G~i~~ 549 (585)
T TIGR01192 499 -----------TSALDVETEARVKNAIDALRKNRTTFIIAHRLSTV-RNADLVLFLDQGRLIE 549 (585)
T ss_pred -----------ccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHH-HcCCEEEEEECCEEEE
Confidence 44444433222211111 115799999999877 6699999999999864
No 326
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.76 E-value=1e-18 Score=177.89 Aligned_cols=166 Identities=17% Similarity=0.113 Sum_probs=106.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhh---------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAA---------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~---------~~~~~~ 199 (350)
..+++..++++|+.++|+|+|||||||+++.++|+.. +.+|+|.+... +.+++ .+..++
T Consensus 333 ~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 411 (544)
T TIGR01842 333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP-PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAEN 411 (544)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHH
Confidence 4678888999999999999999999999999999984 55888866321 01111 122333
Q ss_pred HHHHhcccccchhhhhhh------cc-cC-----CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIR------FE-DC-----TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~------~~-~~-----~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+.+....+ +. .. .........|||||+||++||||++++|+++|||||
T Consensus 412 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEp---------- 481 (544)
T TIGR01842 412 IARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEP---------- 481 (544)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCC----------
Confidence 321100000011111111 00 01 011233567999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|....+....... +-+++|+.||..+. +..+|.++++|.|++.+.
T Consensus 482 -----------ts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~-~~~~d~i~~l~~G~i~~~ 534 (544)
T TIGR01842 482 -----------NSNLDEEGEQALANAIKALKARGITVVVITHRPSL-LGCVDKILVLQDGRIARF 534 (544)
T ss_pred -----------ccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH-HHhCCEEEEEECCEEEee
Confidence 44444332222111111 11569999999985 578999999999998653
No 327
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.76 E-value=7.3e-19 Score=156.04 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=77.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchhh----------hhHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVAA----------MSVAKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~~----------~~~~~~v 200 (350)
.+++...+.+|++++|+|+|||||||+++.++|... +.+|.|.+... +.+.+ .++.+++
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 94 (198)
T TIGR01189 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENL 94 (198)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHH
Confidence 456777899999999999999999999999999874 55787765321 01111 1222333
Q ss_pred HHHhcc--cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 201 AEEFGC--RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 201 ~~~~~~--~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
...... .....+...+...+... .++.+..||+||+||++||++++.+|+++|||||
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 154 (198)
T TIGR01189 95 HFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEP 154 (198)
T ss_pred HHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 221110 00111222233323322 2467789999999999999999999999999999
No 328
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.76 E-value=1.1e-18 Score=179.29 Aligned_cols=166 Identities=18% Similarity=0.184 Sum_probs=107.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~~ 199 (350)
..+++...+++|+.++|+|+|||||||+++.++|+.. +.+|.|.+.+. +.+++. ++.++
T Consensus 350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~N 428 (588)
T PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD-PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDN 428 (588)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHH
Confidence 5777888999999999999999999999999999984 56888866421 111221 22333
Q ss_pred HHHHhcccccchhhhhhh------ccc-CC-Ccccc----ccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIR------FED-CT-SSETL----IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~------~~~-~~-~~~~~----i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+.+...++ +.. .+ ..++. -..|||||+||++|||+++++|+++|||||
T Consensus 429 i~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEp---------- 498 (588)
T PRK13657 429 IRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA---------- 498 (588)
T ss_pred HhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC----------
Confidence 332110000111111111 111 10 11222 346999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+++...+...+... +-++||+.||..+. +..+|.+++++.|.+.+.
T Consensus 499 -----------ts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~-~~~~D~ii~l~~G~i~~~ 550 (588)
T PRK13657 499 -----------TSALDVETEAKVKAALDELMKGRTTFIIAHRLST-VRNADRILVFDNGRVVES 550 (588)
T ss_pred -----------ccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHH-HHhCCEEEEEECCEEEEe
Confidence 44444433322211111 12579999999875 578999999999998754
No 329
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.76 E-value=1.2e-18 Score=178.34 Aligned_cols=165 Identities=18% Similarity=0.249 Sum_probs=107.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhh---------------------HHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS---------------------VAK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~---------------------~~~ 198 (350)
..+++...+++|+.++|+|+|||||||+++.++++.. +.+|+|.+ +...+...+ +.+
T Consensus 344 vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-~~~G~I~i-dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~ 421 (567)
T COG1132 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSGEILI-DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRE 421 (567)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEE-CCEehhhcCHHHHHHhccEEcccceeecccHHH
Confidence 4566778899999999999999999999999999985 45899987 332222211 222
Q ss_pred HHHHHhcccccchhhhhhh------c-ccCC-Cccccc----cccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 199 RVAEEFGCRLGQEVGYTIR------F-EDCT-SSETLI----KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 199 ~v~~~~~~~~~~~v~~~~~------~-~~~~-~~~~~i----~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
++......-..+++....+ + .+.+ ..++.+ ..||||||||++||||++.+|+++|||||
T Consensus 422 NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEa--------- 492 (567)
T COG1132 422 NIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEA--------- 492 (567)
T ss_pred HHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecc---------
Confidence 2221111000112211111 1 1111 123333 47999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|........+.. .+-|++++-+|-..+... +|.++|+|.|++.+.
T Consensus 493 ------------TSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~ 544 (567)
T COG1132 493 ------------TSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVER 544 (567)
T ss_pred ------------ccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEe
Confidence 4444443322221111 111578889999966655 999999999998654
No 330
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=1.1e-18 Score=148.31 Aligned_cols=177 Identities=12% Similarity=0.140 Sum_probs=116.4
Q ss_pred hhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cchhh-hhHHH
Q psy9590 130 EQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRVAA-MSVAK 198 (350)
Q Consensus 130 ~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i~~-~~~~~ 198 (350)
..-+++.-..+.+.+....+.|+++.|+|.+||||||+++|+..+. .|..|.|.+... .-..+ ....+
T Consensus 11 dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE-~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~ 89 (256)
T COG4598 11 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-KPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQ 89 (256)
T ss_pred HHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc-CCCCceEEECCeEEEeeeCCCCCeeeCCHHHHH
Confidence 3345555566777888889999999999999999999999999887 466888866421 11111 11112
Q ss_pred HHH-------HHhccc--------------------ccchhhhhhhcccC---CC-ccccccccChhHHHHHHHHhhcCC
Q psy9590 199 RVA-------EEFGCR--------------------LGQEVGYTIRFEDC---TS-SETLIKYMTDGMLLRECLVDLDLN 247 (350)
Q Consensus 199 ~v~-------~~~~~~--------------------~~~~v~~~~~~~~~---~~-~~~~i~~lS~G~~qr~~ia~all~ 247 (350)
++. +.++.. ..+.+.....+... .. .+....+|||||+||++|||||+.
T Consensus 90 r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLam 169 (256)
T COG4598 90 RLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAM 169 (256)
T ss_pred HHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhc
Confidence 221 111111 11111111112111 11 224456899999999999999999
Q ss_pred CCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccc----eeEEEEEecccccccccCCEEEEEeCC
Q psy9590 248 NYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR----ISRVVIATNIAETSLTIDGIFYVVDPG 323 (350)
Q Consensus 248 ~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~----~~~vi~sT~iae~s~ti~d~~~vid~G 323 (350)
+|+++++||| +-.+++-...+...-+.+ =|+.++.||.+.++-.+...++++..|
T Consensus 170 eP~vmLFDEP---------------------TSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G 228 (256)
T COG4598 170 EPEVMLFDEP---------------------TSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQG 228 (256)
T ss_pred CCceEeecCC---------------------cccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecc
Confidence 9999999999 555554333322111111 178999999999999999999999999
Q ss_pred eeeeE
Q psy9590 324 FVKQK 328 (350)
Q Consensus 324 ~~~~~ 328 (350)
++.+.
T Consensus 229 ~iEE~ 233 (256)
T COG4598 229 KIEEE 233 (256)
T ss_pred eeccc
Confidence 98653
No 331
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=1.5e-18 Score=178.33 Aligned_cols=165 Identities=15% Similarity=0.133 Sum_probs=108.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhh---------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAA---------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~---------~~~~~~ 199 (350)
..+++..++++|+.++|+|+|||||||+++.++|+.. +.+|.|.+... +.+++ -++.++
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~N 434 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP-LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLAN 434 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHH
Confidence 5678889999999999999999999999999999984 55888876421 11111 122333
Q ss_pred HHHHhcccccchhhhhhhc------cc-CC-Cccc----cccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRF------ED-CT-SSET----LIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~------~~-~~-~~~~----~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+...... ..+++....+. .. .+ ..++ .-..|||||+||++||||++.+|+++|||||
T Consensus 435 I~~~~~~-~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEp---------- 503 (592)
T PRK10790 435 VTLGRDI-SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEA---------- 503 (592)
T ss_pred HHhCCCC-CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCC----------
Confidence 3321110 01111111110 00 10 0112 2246999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..+|..-.+....... +-+++|+.||..+.. ..+|.++++|.|.+.+.
T Consensus 504 -----------ts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l-~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 504 -----------TANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTI-VEADTILVLHRGQAVEQ 555 (592)
T ss_pred -----------cccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCCEEEEEECCEEEEE
Confidence 44554433332222111 126799999999765 56999999999998753
No 332
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=1.1e-18 Score=178.48 Aligned_cols=166 Identities=20% Similarity=0.180 Sum_probs=106.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhh---------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAA---------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~---------~~~~~~ 199 (350)
..+++...+++|+.++|+|+|||||||+++.++|+.. +.+|+|.+.... .+++ .++.++
T Consensus 330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 408 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD-VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN 408 (569)
T ss_pred cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHH
Confidence 4677888999999999999999999999999999984 568988763210 0111 122233
Q ss_pred HHHHhcccccchhhhhhhcc-------cCC-Ccc----ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRFE-------DCT-SSE----TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~~-------~~~-~~~----~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+.+....+.. ..+ ..+ .....|||||+||++|||+++.+|+++|||||
T Consensus 409 i~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEp---------- 478 (569)
T PRK10789 409 IALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA---------- 478 (569)
T ss_pred HhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc----------
Confidence 32110000001111111110 010 011 23357999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|....+...+... +-+++|+.||..++. ..+|.++++|.|++.+.
T Consensus 479 -----------ts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~-~~~d~i~~l~~G~i~~~ 530 (569)
T PRK10789 479 -----------LSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSAL-TEASEILVMQHGHIAQR 530 (569)
T ss_pred -----------cccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHH-HcCCEEEEEeCCEEEEe
Confidence 44444433322211111 125799999999875 66999999999998643
No 333
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.75 E-value=1.4e-18 Score=181.59 Aligned_cols=166 Identities=15% Similarity=0.113 Sum_probs=107.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------------------cchhhhhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------------------RRVAAMSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------------------~~i~~~~~~~~ 199 (350)
..+++...+++|+.++|+|+|||||||+++.++|+.. +.+|+|.+..- ..+...++.++
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~-p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eN 550 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT-PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDN 550 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHH
Confidence 4677888999999999999999999999999999984 55898876421 01111122233
Q ss_pred HHHHhcccccchhhhhhh------ccc-CC-Ccc----ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIR------FED-CT-SSE----TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~------~~~-~~-~~~----~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+.+....+ +.. .+ ..+ .....|||||+||++||||++.+|+++|||||
T Consensus 551 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEp---------- 620 (694)
T TIGR01846 551 IALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEA---------- 620 (694)
T ss_pred HhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECC----------
Confidence 322110000011111111 000 10 111 22357999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccccc---eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAWR---ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|....+...+...+ -+++|+.||..++. ..+|.++++|.|++.+.
T Consensus 621 -----------ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~-~~~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 621 -----------TSALDYESEALIMRNMREICRGRTVIIIAHRLSTV-RACDRIIVLEKGQIAES 672 (694)
T ss_pred -----------CcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHH-HhCCEEEEEeCCEEEEe
Confidence 444444332222211111 15799999999876 56999999999998753
No 334
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.75 E-value=1.1e-18 Score=178.70 Aligned_cols=164 Identities=17% Similarity=0.197 Sum_probs=107.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcc------------hhhh---------hHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRR------------VAAM---------SVAK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~------------i~~~---------~~~~ 198 (350)
..+++...+++|+.++|+|+|||||||+++.++|+.. +.+|+|.+.. .. +++. ++.+
T Consensus 347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-~~~G~I~i~g-~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~ 424 (571)
T TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE-PDSGQILLDG-HDLADYTLASLRRQVALVSQDVVLFNDTIAN 424 (571)
T ss_pred cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECC-EeHHhcCHHHHHhhceEEccCcccccccHHH
Confidence 3557888999999999999999999999999999984 5589987742 11 1111 1222
Q ss_pred HHHHHhc-ccccchhhhhhhcc------c-CC-Cccccc----cccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 199 RVAEEFG-CRLGQEVGYTIRFE------D-CT-SSETLI----KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 199 ~v~~~~~-~~~~~~v~~~~~~~------~-~~-~~~~~i----~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
++..... ....+.+...++.. . .+ ..++.+ ..|||||+||++|||+++.+|++++||||
T Consensus 425 Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEp-------- 496 (571)
T TIGR02203 425 NIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEA-------- 496 (571)
T ss_pred HHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc--------
Confidence 2221110 00111111111111 1 11 112222 36999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.+|....+...+... +-+++|+.||..+. +..+|.+++++.|++.+
T Consensus 497 -------------ts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~-~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 497 -------------TSALDNESERLVQAALERLMQGRTTLVIAHRLST-IEKADRIVVMDDGRIVE 547 (571)
T ss_pred -------------cccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHH-HHhCCEEEEEeCCEEEe
Confidence 44555444333222111 12679999999976 57899999999998864
No 335
>KOG0055|consensus
Probab=99.75 E-value=1.6e-18 Score=183.10 Aligned_cols=167 Identities=15% Similarity=0.140 Sum_probs=111.3
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------------------cchhhhhHHH
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------------------RRVAAMSVAK 198 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------------------~~i~~~~~~~ 198 (350)
.+.+++...+++|+.++|+|++||||||++..+.+++. |.+|.|.+... .-+...++.+
T Consensus 367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd-P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~e 445 (1228)
T KOG0055|consen 367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD-PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRE 445 (1228)
T ss_pred hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHH
Confidence 45677888999999999999999999999999999985 55899876421 1122223333
Q ss_pred HHHHHhcccccchhhhhh------hcccCC------CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 199 RVAEEFGCRLGQEVGYTI------RFEDCT------SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 199 ~v~~~~~~~~~~~v~~~~------~~~~~~------~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
++.........+.+.... +|.... ....+-.+||||||||++|||||+.+|++|+||||
T Consensus 446 NI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEa--------- 516 (1228)
T KOG0055|consen 446 NIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEA--------- 516 (1228)
T ss_pred HHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCc---------
Confidence 333221110011111111 111100 01122236999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|....+...+ +..+=|+-|+-+|-+.|.-. +|.++|++.|++.|.
T Consensus 517 ------------TSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 517 ------------TSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQ 568 (1228)
T ss_pred ------------ccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEe
Confidence 55555444332222 12222788999999999866 999999999999876
No 336
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.3e-18 Score=167.59 Aligned_cols=166 Identities=16% Similarity=0.195 Sum_probs=108.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----------chhhhhHHHH-----HHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----------RVAAMSVAKR-----VAEE 203 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----------~i~~~~~~~~-----v~~~ 203 (350)
+.+++..++++||.++|+|++||||||++..+.+... +.+|+|...... .++.+++... +.+.
T Consensus 353 ~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~-~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~N 431 (573)
T COG4987 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD-PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDN 431 (573)
T ss_pred hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC-CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHH
Confidence 5788999999999999999999999999999999874 558998774311 1111111100 0111
Q ss_pred hc--cc--c-------cchhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 204 FG--CR--L-------GQEVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 204 ~~--~~--~-------~~~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
.. .+ . -++|+..-...+.+ .-...-..||||++||++|||+|+++.+++|||||
T Consensus 432 L~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEP---------- 501 (573)
T COG4987 432 LRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEP---------- 501 (573)
T ss_pred HhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCC----------
Confidence 00 00 0 01222211111111 11122236999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+.++|+.-...... ..++-+++++.||..-. +..+|.+.|+|.|++.+.
T Consensus 502 -----------TegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~-le~~drIivl~~Gkiie~ 553 (573)
T COG4987 502 -----------TEGLDPITERQVLALLFEHAEGKTLLMVTHRLRG-LERMDRIIVLDNGKIIEE 553 (573)
T ss_pred -----------cccCChhhHHHHHHHHHHHhcCCeEEEEeccccc-HhhcCEEEEEECCeeeec
Confidence 66666544333221 11112689999999874 477899999999998765
No 337
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=2.9e-18 Score=151.86 Aligned_cols=113 Identities=15% Similarity=0.118 Sum_probs=75.6
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-------chhh----------hhHHHHHHHHhcc
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-------RVAA----------MSVAKRVAEEFGC 206 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-------~i~~----------~~~~~~v~~~~~~ 206 (350)
+..++++|++++|+|+|||||||++++++|... +.+|.+.+.... .+.+ .++.+++......
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~ 97 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-PSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEI 97 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHh
Confidence 455788999999999999999999999999874 558887663210 0111 1223333221110
Q ss_pred -cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 207 -RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 207 -~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
.....+...++..+... .++.+..||+||+||+.+|++++.+|+++|+|||
T Consensus 98 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP 150 (195)
T PRK13541 98 YNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEV 150 (195)
T ss_pred cccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 01112222223333222 2466789999999999999999999999999999
No 338
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.74 E-value=2.5e-18 Score=176.15 Aligned_cols=166 Identities=18% Similarity=0.162 Sum_probs=107.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~~ 199 (350)
..+++..++++|+.++|+|+|||||||+++.++|+.. +.+|+|.+... +.+++. ++.++
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~N 433 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD-PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMEN 433 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHH
Confidence 4667888999999999999999999999999999984 55898876421 011111 22233
Q ss_pred HHHHhcccccchhhhhhhc------ccCC--Ccc----ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRF------EDCT--SSE----TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~------~~~~--~~~----~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+.+...++. .+.. ..+ ..-..|||||+||+++||+++++|+++|+|||
T Consensus 434 i~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEp---------- 503 (576)
T TIGR02204 434 IRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEA---------- 503 (576)
T ss_pred HhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCc----------
Confidence 3221110001111111110 0000 011 22347999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|+...+....... +-+++|+.||..+.. ..+|.+++++.|.+.+.
T Consensus 504 -----------ts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~-~~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 504 -----------TSALDAESEQLVQQALETLMKGRTTLIIAHRLATV-LKADRIVVMDQGRIVAQ 555 (576)
T ss_pred -----------ccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCCEEEEEECCEEEee
Confidence 44444443322211111 115799999998764 67999999999998754
No 339
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.74 E-value=2.7e-18 Score=174.92 Aligned_cols=170 Identities=12% Similarity=0.074 Sum_probs=108.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhhhHHHHHHHH-hccc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAMSVAKRVAEE-FGCR 207 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~~~~~~v~~~-~~~~ 207 (350)
..+++..++++|+.++|+|+|||||||+++.++|+.. +.+|+|.+... +.+++.+....+... ....
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 416 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE 416 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence 4678888999999999999999999999999999984 56899876421 111111111111100 0000
Q ss_pred ----ccchhhhhhhcccCCC----ccc--cccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhh
Q psy9590 208 ----LGQEVGYTIRFEDCTS----SET--LIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFK 277 (350)
Q Consensus 208 ----~~~~v~~~~~~~~~~~----~~~--~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~ 277 (350)
..+.+...+...+... .+. .-..|||||+||++||||++++|+++|||||
T Consensus 417 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~-------------------- 476 (547)
T PRK10522 417 GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEW-------------------- 476 (547)
T ss_pred cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC--------------------
Confidence 0011111111111110 011 1247999999999999999999999999999
Q ss_pred hcCcccceeccCCccccc-----ceeEEEEEecccccccccCCEEEEEeCCeeeeEeeec
Q psy9590 278 KNQRLEPLYNKYEEPNAW-----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNS 332 (350)
Q Consensus 278 ~~~~v~~~~~~~~~~~~~-----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~ 332 (350)
+-.+|....+....... .-++||+.||..++ +..+|.++++|.|.+.+...+.
T Consensus 477 -ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~-~~~~d~i~~l~~G~i~e~~~~~ 534 (547)
T PRK10522 477 -AADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY-FIHADRLLEMRNGQLSELTGEE 534 (547)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH-HHhCCEEEEEECCEEEEecCCc
Confidence 44444433222111111 01579999999875 5789999999999998765444
No 340
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.74 E-value=2.6e-18 Score=175.27 Aligned_cols=165 Identities=13% Similarity=0.180 Sum_probs=106.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch------------hhhhHHHHH-----HH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV------------AAMSVAKRV-----AE 202 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i------------~~~~~~~~v-----~~ 202 (350)
+.+++...+++|++++|+|||||||||+++.++++. .+.+|.|.+.. ..+ ++.+....+ ..
T Consensus 357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~-~p~~G~i~~~g-~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 434 (555)
T TIGR01194 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY-IPQEGEILLDG-AAVSADSRDDYRDLFSAIFADFHLFDDLIGP 434 (555)
T ss_pred eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECC-EECCCCCHHHHHhhCcEEccChhhhhhhhhc
Confidence 457788899999999999999999999999999988 45689987742 111 111111000 00
Q ss_pred Hhcc-cccchhhhhhhcccC-------CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHH
Q psy9590 203 EFGC-RLGQEVGYTIRFEDC-------TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLS 274 (350)
Q Consensus 203 ~~~~-~~~~~v~~~~~~~~~-------~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~ 274 (350)
.... ...+.+...++..+. +........|||||+||++|||+++.+|+++|||||
T Consensus 435 n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~----------------- 497 (555)
T TIGR01194 435 DEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEW----------------- 497 (555)
T ss_pred ccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC-----------------
Confidence 0000 000111111111111 111112367999999999999999999999999999
Q ss_pred hhhhcCcccceeccCCcccc----c-ceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 275 KFKKNQRLEPLYNKYEEPNA----W-RISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~~~----~-~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..+|+...+...... . .-+++|+.||..++ +..+|.++|+|.|++.+.
T Consensus 498 ----ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~-~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 498 ----AADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY-FELADQIIKLAAGCIVKD 551 (555)
T ss_pred ----ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH-HHhCCEEEEEECCEEEEe
Confidence 4444444333221111 0 12679999999985 578999999999998653
No 341
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=2.5e-18 Score=152.87 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=77.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc----------chh----------hhhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR----------RVA----------AMSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~----------~i~----------~~~~~~~ 199 (350)
+.+++..++++|++++|+|+|||||||++++++|... +.+|+|.+.... .++ ..++.++
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 94 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN 94 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHH
Confidence 3566778899999999999999999999999999874 568888764210 000 1112222
Q ss_pred HHHHhcc-cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 200 VAEEFGC-RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 200 v~~~~~~-~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
+...... .....+...++..+... .++.+..||+||+||++||++++.+|+++|+|||
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP 154 (200)
T PRK13540 95 CLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEP 154 (200)
T ss_pred HHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2211100 00011222223222221 2356678999999999999999999999999999
No 342
>KOG0057|consensus
Probab=99.73 E-value=2.1e-18 Score=167.99 Aligned_cols=162 Identities=17% Similarity=0.177 Sum_probs=108.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch------------hhhhH---------HH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV------------AAMSV---------AK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i------------~~~~~---------~~ 198 (350)
+.+.+..+|+.|+-++|+|+|||||||+++.++.+.. .+|+|.+. +.++ ++.|+ ..
T Consensus 367 iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~Id-G~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~ 443 (591)
T KOG0057|consen 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILID-GQDIKEVSLESLRQSIGVVPQDSVLFNDTILY 443 (591)
T ss_pred eecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEEC-CeeHhhhChHHhhhheeEeCCcccccchhHHH
Confidence 5678899999999999999999999999999999974 68999774 2222 22221 11
Q ss_pred HHHHHhcccc--cchh-------hhhhhcccCCC-----ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 199 RVAEEFGCRL--GQEV-------GYTIRFEDCTS-----SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 199 ~v~~~~~~~~--~~~v-------~~~~~~~~~~~-----~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
++. +|+.. .++| +.+-.+...+. ...+-..|||||+||++++||++.+|+++++|||
T Consensus 444 NI~--YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa------- 514 (591)
T KOG0057|consen 444 NIK--YGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA------- 514 (591)
T ss_pred Hhh--cCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc-------
Confidence 221 11110 0111 11111111111 1234558999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCcccccc---eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR---ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|..-..+....+.+ -|+||+--|...+... +|.++|+|+|++++.
T Consensus 515 --------------TS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 515 --------------TSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEY 566 (591)
T ss_pred --------------ccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEe
Confidence 444444333222221112 2789999999998755 799999999999765
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=99.73 E-value=6.3e-18 Score=172.74 Aligned_cols=160 Identities=13% Similarity=0.049 Sum_probs=101.0
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE----------cCCcchhhh--------------h-
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC----------TQPRRVAAM--------------S- 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~----------~~~~~i~~~--------------~- 195 (350)
.+++. .+++|++++|+|+|||||||++++++|... +..|+|.. .....+... .
T Consensus 90 L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q 167 (590)
T PRK13409 90 LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQ 167 (590)
T ss_pred EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeeccc
Confidence 34454 789999999999999999999999999884 55888851 011111000 0
Q ss_pred ---HHH-----HHHHHhcc-cccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 196 ---VAK-----RVAEEFGC-RLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 196 ---~~~-----~v~~~~~~-~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
... .+.+.... .....+...+...+... .++.+..|||||+||++||++++.+|+++|||||
T Consensus 168 ~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEP-------- 239 (590)
T PRK13409 168 YVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP-------- 239 (590)
T ss_pred chhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC--------
Confidence 000 00000000 00011222222233322 3577889999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCcccccc---eeEEEEEecccccccccCCEEEEEeCC
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR---ISRVVIATNIAETSLTIDGIFYVVDPG 323 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~sT~iae~s~ti~d~~~vid~G 323 (350)
+..+++.........+.+ -.+||++||+.+....++|.+++++.|
T Consensus 240 -------------ts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 240 -------------TSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred -------------CCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 333333322111110000 135999999999999999999999863
No 344
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.72 E-value=5.2e-18 Score=163.84 Aligned_cols=183 Identities=15% Similarity=0.192 Sum_probs=122.6
Q ss_pred hhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch-------------------
Q psy9590 131 QRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV------------------- 191 (350)
Q Consensus 131 ~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i------------------- 191 (350)
..+.+|-..+-+++..++.+|++.+|+|+||+|||||++++.|.+. |++|+|.+. .+.+
T Consensus 10 itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-P~~GeI~v~-G~~v~~~sP~dA~~~GIGMVhQH 87 (501)
T COG3845 10 ITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-PDSGEIRVD-GKEVRIKSPRDAIRLGIGMVHQH 87 (501)
T ss_pred cEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-CCcceEEEC-CEEeccCCHHHHHHcCCcEEeec
Confidence 4466776777888999999999999999999999999999999994 568998774 2211
Q ss_pred ----hhhhHHHHHHHHhccc---------ccchhhhhh-hcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 192 ----AAMSVAKRVAEEFGCR---------LGQEVGYTI-RFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 192 ----~~~~~~~~v~~~~~~~---------~~~~v~~~~-~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
..+++.+++.-..... ....+.... ++.-..+.+..+..||-|++||+.|.++|..++++||||||
T Consensus 88 F~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEP 167 (501)
T COG3845 88 FMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEP 167 (501)
T ss_pred cccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCC
Confidence 1222333333211100 001111111 11122345678889999999999999999999999999999
Q ss_pred CccccccccccChhHHHhhhhcCcccceeccCCcccccceeEEEEEecccccccccCCEEEEEeCCeeeeEeeecC
Q psy9590 258 HERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSK 333 (350)
Q Consensus 258 her~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~~ 333 (350)
|- .|.+-...++|.. -..+.+ ++ .+||+-||=+++...+||.+-|+-.|++ ...+++.
T Consensus 168 ------Ta-VLTP~E~~~lf~~---l~~l~~------~G-~tIi~ITHKL~Ev~~iaDrvTVLR~Gkv-vgt~~~~ 225 (501)
T COG3845 168 ------TA-VLTPQEADELFEI---LRRLAA------EG-KTIIFITHKLKEVMAIADRVTVLRRGKV-VGTVDPV 225 (501)
T ss_pred ------cc-cCCHHHHHHHHHH---HHHHHH------CC-CEEEEEeccHHHHHHhhCeeEEEeCCeE-EeeecCC
Confidence 11 1111122222210 000000 00 5799999999999999999999999995 5777743
No 345
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=5.9e-18 Score=145.78 Aligned_cols=164 Identities=15% Similarity=0.174 Sum_probs=111.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh---hhHHHHHHHH-------------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA---MSVAKRVAEE------------- 203 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~---~~~~~~v~~~------------- 203 (350)
+.+++...+++|.++.++||||+|||||+.++..+.+.+ +|.|.+.. ..++. ...++.++-.
T Consensus 16 vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d-~G~i~i~g-~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~ 93 (252)
T COG4604 16 VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD-SGEITIDG-LELTSTPSKELAKKLSILKQENHINSRLTVR 93 (252)
T ss_pred eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc-CceEEEee-eecccCChHHHHHHHHHHHhhchhhheeEHH
Confidence 356778889999999999999999999999999988554 89987742 22211 1112222111
Q ss_pred ----hcc----------cccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 204 ----FGC----------RLGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 204 ----~~~----------~~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
||. +....+...+++.+.... ++-+.+|||||+||..+|..++++.++++||||
T Consensus 94 dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEP----------- 162 (252)
T COG4604 94 DLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEP----------- 162 (252)
T ss_pred HHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCc-----------
Confidence 110 111234444555555443 356779999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcccccc----e-eEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNAWR----I-SRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~----~-~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
.-.++....-.....+.+ . ++||+.=|+...+-..+|.++-+.+|++.
T Consensus 163 ----------LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv 215 (252)
T COG4604 163 ----------LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV 215 (252)
T ss_pred ----------ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE
Confidence 222222111111110000 0 67999999999999999999999999884
No 346
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=1.3e-17 Score=145.62 Aligned_cols=166 Identities=17% Similarity=0.253 Sum_probs=110.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--c---------------------chhhhhH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--R---------------------RVAAMSV 196 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--~---------------------~i~~~~~ 196 (350)
+.+++..+|.+|+++.|+|.|||||||+++.+.|... +++|+|.+.+. . ....+++
T Consensus 21 ~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTi 99 (263)
T COG1101 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTI 99 (263)
T ss_pred HHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccH
Confidence 4566777899999999999999999999999999984 55899876421 0 1112223
Q ss_pred HHHH--HHHhcccccchh--------hh--hhhcccC---CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 197 AKRV--AEEFGCRLGQEV--------GY--TIRFEDC---TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 197 ~~~v--~~~~~~~~~~~v--------~~--~~~~~~~---~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
++++ +..+|...+-.. .+ .+...+. ....+++..|||||||-++++.|.++.|++++|||-
T Consensus 100 eENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH---- 175 (263)
T COG1101 100 EENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH---- 175 (263)
T ss_pred HHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch----
Confidence 3332 222222211100 00 0000011 112467889999999999999999999999999996
Q ss_pred cccccccChhHHHhhhhcCcccceeccCCcccccce-----eEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 262 IHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI-----SRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 262 ~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..++|........-..++ -+.++.||.+|.++...++.+++|+|++..
T Consensus 176 -----------------TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 176 -----------------TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred -----------------hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 4444444332221100010 347999999999999999999999999853
No 347
>PLN03073 ABC transporter F family; Provisional
Probab=99.72 E-value=7.9e-18 Score=175.21 Aligned_cols=166 Identities=16% Similarity=0.121 Sum_probs=105.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc--CCCCCcEEEEc-CC---cchhhh-----hH-------H---H
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEA--GFTARGKIGCT-QP---RRVAAM-----SV-------A---K 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~--~~~~~G~i~~~-~~---~~i~~~-----~~-------~---~ 198 (350)
+.+++...|..|++++|+|+||||||||++++++.. +.+.+|+|.+. |. ...... .. . .
T Consensus 192 ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~ 271 (718)
T PLN03073 192 LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQ 271 (718)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence 567888899999999999999999999999999854 35668888653 21 011110 00 0 0
Q ss_pred HHHHHhc-----------------cccc---chhhh-------------------hhhcccCC--CccccccccChhHHH
Q psy9590 199 RVAEEFG-----------------CRLG---QEVGY-------------------TIRFEDCT--SSETLIKYMTDGMLL 237 (350)
Q Consensus 199 ~v~~~~~-----------------~~~~---~~v~~-------------------~~~~~~~~--~~~~~i~~lS~G~~q 237 (350)
.+.+... .... ..+.. .+...+.. ..++.+..|||||+|
T Consensus 272 ~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~ 351 (718)
T PLN03073 272 LVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRM 351 (718)
T ss_pred HHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHH
Confidence 0111000 0000 00000 01111111 124567899999999
Q ss_pred HHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccce-eEEEEEecccccccccCCE
Q psy9590 238 RECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI-SRVVIATNIAETSLTIDGI 316 (350)
Q Consensus 238 r~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-~~vi~sT~iae~s~ti~d~ 316 (350)
|++||++|+.+|++|||||| +..+++.........+.+. .+||++||+.+....+||.
T Consensus 352 rv~LA~aL~~~p~lLlLDEP---------------------t~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 352 RIALARALFIEPDLLLLDEP---------------------TNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred HHHHHHHHhcCCCEEEEECC---------------------CCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCE
Confidence 99999999999999999999 2233322221111100000 3599999999999999999
Q ss_pred EEEEeCCeee
Q psy9590 317 FYVVDPGFVK 326 (350)
Q Consensus 317 ~~vid~G~~~ 326 (350)
+++++.|++.
T Consensus 411 i~~l~~g~i~ 420 (718)
T PLN03073 411 ILHLHGQKLV 420 (718)
T ss_pred EEEEECCEEE
Confidence 9999999874
No 348
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.72 E-value=1.2e-17 Score=151.41 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=58.6
Q ss_pred cccccccChhHHHHHHHHhhcCCCC--cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc---ccc-ee
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLNNY--SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR-IS 298 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~~~--~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~-~~ 298 (350)
+..+..||+||+||++||++++.+| +++|+||| +..+++......... .++ -.
T Consensus 132 ~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP---------------------t~gLD~~~~~~l~~~l~~~~~~g~ 190 (226)
T cd03270 132 SRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP---------------------SIGLHPRDNDRLIETLKRLRDLGN 190 (226)
T ss_pred cCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC---------------------ccCCCHHHHHHHHHHHHHHHhCCC
Confidence 5677899999999999999999998 59999999 333333322211110 000 13
Q ss_pred EEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 299 RVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 299 ~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
+||++||+.+.. .++|.++++ +.|++.
T Consensus 191 tii~itH~~~~~-~~~d~i~~l~~~~~~~~G~iv 223 (226)
T cd03270 191 TVLVVEHDEDTI-RAADHVIDIGPGAGVHGGEIV 223 (226)
T ss_pred EEEEEEeCHHHH-HhCCEEEEeCCCccccCCEEE
Confidence 599999999975 799999999 778764
No 349
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.71 E-value=6.4e-18 Score=171.46 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=100.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--c---------chhh---------hhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--R---------RVAA---------MSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--~---------~i~~---------~~~~~~ 199 (350)
..+++...+++|+.++|+|+|||||||+++.++|+.. +.+|+|.+... + .+++ .++.++
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~N 415 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD-PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN 415 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHH
Confidence 4678899999999999999999999999999999984 55888866421 0 1111 122233
Q ss_pred HHHHhcccccchhhhhhhc------ccCCC--ccc----cccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRF------EDCTS--SET----LIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~------~~~~~--~~~----~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+.+...++. ....+ .++ .-..|||||+||++|||+++++|+++|||||
T Consensus 416 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~---------- 485 (529)
T TIGR02857 416 IRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP---------- 485 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCc----------
Confidence 3211110000111111111 00000 122 2347999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccccc---eeEEEEEecccccccccCCEEEEE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAWR---ISRVVIATNIAETSLTIDGIFYVV 320 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~sT~iae~s~ti~d~~~vi 320 (350)
+-.+|..-.+...+...+ -+++|+.||..++. ..+|.++|+
T Consensus 486 -----------ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~-~~~d~i~~l 529 (529)
T TIGR02857 486 -----------TAHLDAETEALVTEALRALAQGRTVLLVTHRLALA-ERADRIVVL 529 (529)
T ss_pred -----------ccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-HhCCEEEeC
Confidence 444444433322221111 15799999999775 778998874
No 350
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.71 E-value=3.6e-18 Score=171.01 Aligned_cols=166 Identities=18% Similarity=0.203 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhh----------HHHHHHHHh---
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS----------VAKRVAEEF--- 204 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~----------~~~~v~~~~--- 204 (350)
..+.+++...+.+|+.+||+|+|||||||+++++.|.. .+.+|+|......++++++ +...+....
T Consensus 16 ~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~-~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~ 94 (530)
T COG0488 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGEL 94 (530)
T ss_pred ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC-cCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHH
Confidence 33456677889999999999999999999999999998 4558887654322222221 111110000
Q ss_pred ---------------------------------cccccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcE
Q psy9590 205 ---------------------------------GCRLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSV 251 (350)
Q Consensus 205 ---------------------------------~~~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~v 251 (350)
+......+...+.-.+....++.+..||||++.|++||++|+.+|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDl 174 (530)
T COG0488 95 RELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDL 174 (530)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCE
Confidence 00000111111222222223688999999999999999999999999
Q ss_pred EEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccce-eEEEEEecccccccccCCEEEEEeCCee
Q psy9590 252 IMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI-SRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 252 iIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
|+|||| +-.++.--....+..+.+. .+||+.||+-++.-.+|+.++=+|.|+.
T Consensus 175 LLLDEP---------------------TNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l 228 (530)
T COG0488 175 LLLDEP---------------------TNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKL 228 (530)
T ss_pred EEEcCC---------------------CcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCce
Confidence 999999 3333222111111000000 2499999999999999999999999966
No 351
>PLN03211 ABC transporter G-25; Provisional
Probab=99.71 E-value=5.2e-18 Score=175.40 Aligned_cols=166 Identities=17% Similarity=0.138 Sum_probs=108.9
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC-CCcEEEEcCC-------cchh----------hhhHHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT-ARGKIGCTQP-------RRVA----------AMSVAKRVA 201 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~-~~G~i~~~~~-------~~i~----------~~~~~~~v~ 201 (350)
+.+++...+++|++++|+||||||||||++.++|..... .+|+|.+... ++++ ..++.+.+.
T Consensus 83 iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~ 162 (659)
T PLN03211 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLV 162 (659)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHH
Confidence 456677789999999999999999999999999987432 3687765321 1111 223334332
Q ss_pred HHh--ccc-------ccchhhhhhhcccCCC------ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 202 EEF--GCR-------LGQEVGYTIRFEDCTS------SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 202 ~~~--~~~-------~~~~v~~~~~~~~~~~------~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
... ... ..+.+...++..+... .+..+..||||||||+.||++|+.+|++++||||
T Consensus 163 ~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP--------- 233 (659)
T PLN03211 163 FCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP--------- 233 (659)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC---------
Confidence 211 100 0011222222222221 1234568999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCccccc----ceeEEEEEeccccc-ccccCCEEEEEeCCeee
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAET-SLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~-s~ti~d~~~vid~G~~~ 326 (350)
+.++|..........+. +-++||++||..++ ...++|.+++++.|++.
T Consensus 234 ------------tsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 234 ------------TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred ------------CCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 44444443322221111 11679999999984 67899999999999874
No 352
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=2.9e-17 Score=138.90 Aligned_cols=166 Identities=21% Similarity=0.263 Sum_probs=109.4
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc----CCcchhhhhHHHH--HH-HHhcc-------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT----QPRRVAAMSVAKR--VA-EEFGC------- 206 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~----~~~~i~~~~~~~~--v~-~~~~~------- 206 (350)
.+++.+++.+||+.+|+|++||||||+++++.+-.. +..|.+... +++.+..++.+++ +. .++|.
T Consensus 22 c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~D 100 (258)
T COG4107 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRD 100 (258)
T ss_pred ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccc
Confidence 456788999999999999999999999999999874 558888664 4556665555432 11 12221
Q ss_pred ------cccchhhhh-------------------hhcccC--CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 207 ------RLGQEVGYT-------------------IRFEDC--TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 207 ------~~~~~v~~~-------------------~~~~~~--~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
..+.++++. ++.... ...+.....+||||+||+.|||.|+..|+++++|||
T Consensus 101 GLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEP-- 178 (258)
T COG4107 101 GLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEP-- 178 (258)
T ss_pred cceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCC--
Confidence 111222211 111111 112345568999999999999999999999999999
Q ss_pred cccccccccChhHHHhhhhcCcccceeccCCcccccce-----eEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 260 RTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI-----SRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 260 r~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-++++-.......-..+. -.+++.||++--.--++++..|+..|.+.+.
T Consensus 179 -------------------TGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 179 -------------------TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred -------------------CCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 3333332111000000000 2489999999888888999999999988654
No 353
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.70 E-value=1.3e-17 Score=185.05 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC----------------------------------------
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT---------------------------------------- 178 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~---------------------------------------- 178 (350)
.+.+++..++++|+.++|+|++||||||+++++++++.+.
T Consensus 1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLT 1261 (1466)
T ss_pred ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 3577889999999999999999999999999999998652
Q ss_pred -------------CCcEEEEcC--------------------CcchhhhhHHHHHHHHhcccccchhhhhhhc------c
Q psy9590 179 -------------ARGKIGCTQ--------------------PRRVAAMSVAKRVAEEFGCRLGQEVGYTIRF------E 219 (350)
Q Consensus 179 -------------~~G~i~~~~--------------------~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~------~ 219 (350)
.+|.|.+.. ...+...++.+++.........+++....+. .
T Consensus 1262 ~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI 1341 (1466)
T PTZ00265 1262 KEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFI 1341 (1466)
T ss_pred cccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHH
Confidence 478886631 1111122233444322111111122211111 1
Q ss_pred c-CC-Cccccc----cccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc
Q psy9590 220 D-CT-SSETLI----KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN 293 (350)
Q Consensus 220 ~-~~-~~~~~i----~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~ 293 (350)
. .+ ..++.+ ..||||||||++|||||+.+|++|||||| +-.+|..-.+.....
T Consensus 1342 ~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEa---------------------TSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1342 ESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEA---------------------TSSLDSNSEKLIEKT 1400 (1466)
T ss_pred HhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc---------------------ccccCHHHHHHHHHH
Confidence 1 11 112333 47999999999999999999999999999 444443332222111
Q ss_pred cc-----ceeEEEEEecccccccccCCEEEEEeC----Cee
Q psy9590 294 AW-----RISRVVIATNIAETSLTIDGIFYVVDP----GFV 325 (350)
Q Consensus 294 ~~-----~~~~vi~sT~iae~s~ti~d~~~vid~----G~~ 325 (350)
+. +-+++|+.||-.++. ..+|.++|+|. |++
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti-~~aD~Ivvl~~~~~~G~i 1440 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASI-KRSDKIVVFNNPDRTGSF 1440 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHH-HhCCEEEEEeCCCCCCCE
Confidence 11 126899999999765 77999999999 874
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.70 E-value=7.6e-18 Score=188.11 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=107.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhh---------------------hHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAM---------------------SVAK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~---------------------~~~~ 198 (350)
+.+++...+++|+.++|+|+|||||||+++.++++.. +.+|+|.+.. ..+... ++.+
T Consensus 1251 vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~-p~~G~I~IdG-~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~ 1328 (1495)
T PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE-LEKGRIMIDD-CDVAKFGLTDLRRVLSIIPQSPVLFSGTVRF 1328 (1495)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCceEEECC-EEhhhCCHHHHHhhcEEECCCCeeeCccHHH
Confidence 5788999999999999999999999999999999984 5589997742 222111 1112
Q ss_pred HHHHHhcccccchhhhhhhc------c-cCC-Ccccc----ccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 199 RVAEEFGCRLGQEVGYTIRF------E-DCT-SSETL----IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 199 ~v~~~~~~~~~~~v~~~~~~------~-~~~-~~~~~----i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
++... +....+++...++. . ..+ ..++. -..||||||||++||||++++|++||||||
T Consensus 1329 NL~~~-~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEA--------- 1398 (1495)
T PLN03232 1329 NIDPF-SEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEA--------- 1398 (1495)
T ss_pred HcCCC-CCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECC---------
Confidence 22110 00000111111110 0 010 11222 247999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|..-.+.....+ .+-++||+.||-.++... +|.++|+|.|++.+.
T Consensus 1399 ------------TSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1399 ------------TASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEY 1450 (1495)
T ss_pred ------------cccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE
Confidence 4444433222111111 112679999999998765 899999999999753
No 355
>PLN03130 ABC transporter C family member; Provisional
Probab=99.70 E-value=7.7e-18 Score=188.56 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=107.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~~ 199 (350)
+.+++..+|++||.++|+|+|||||||+++.++++.. +.+|+|.+..- ++++.+ ++.++
T Consensus 1254 VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~-p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE-LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHH
Confidence 5788999999999999999999999999999999984 55899877421 111111 11222
Q ss_pred HHHHhcccccchhhhhhh------cc-cCC-Ccccc----ccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIR------FE-DCT-SSETL----IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~------~~-~~~-~~~~~----i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+... +....+++...++ +. ..+ ..++. -..||+|||||++||||++++|++||||||
T Consensus 1333 Ld~~-~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEA---------- 1401 (1622)
T PLN03130 1333 LDPF-NEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEA---------- 1401 (1622)
T ss_pred hCcC-CCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECC----------
Confidence 2110 0000011111111 10 011 11222 247999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|..-.......+ .+-++||+.+|-+++... +|.++|+|.|++.+.
T Consensus 1402 -----------TSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1402 -----------TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEF 1453 (1622)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEe
Confidence 4444433222111111 112679999999998755 899999999999754
No 356
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.70 E-value=1.4e-17 Score=172.81 Aligned_cols=160 Identities=11% Similarity=0.070 Sum_probs=101.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc---------chhhhhHHHHHHHHh------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR---------RVAAMSVAKRVAEEF------ 204 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~---------~i~~~~~~~~v~~~~------ 204 (350)
+.+++..++++|++++|+|+|||||||++++++|+.+ +.+|.+...... .+...++.+++....
T Consensus 467 il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 545 (659)
T TIGR00954 467 LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-VYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMK 545 (659)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhh
Confidence 4567788999999999999999999999999999874 457876542111 122223444443211
Q ss_pred -cccccchhhhhhhcccCCC----------ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHH
Q psy9590 205 -GCRLGQEVGYTIRFEDCTS----------SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKL 273 (350)
Q Consensus 205 -~~~~~~~v~~~~~~~~~~~----------~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~ 273 (350)
.....+.+...++..+... .......|||||+||++|||+++++|+++|||||
T Consensus 546 ~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEp---------------- 609 (659)
T TIGR00954 546 RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDEC---------------- 609 (659)
T ss_pred ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCC----------------
Confidence 0000111111111111100 0112357999999999999999999999999999
Q ss_pred HhhhhcCcccceeccCCcccccc-eeEEEEEecccccccccCCEEEEEeC
Q psy9590 274 SKFKKNQRLEPLYNKYEEPNAWR-ISRVVIATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~~~~~~-~~~vi~sT~iae~s~ti~d~~~vid~ 322 (350)
+..+++...+.......+ -+++|+.||..+. +..+|.++++|.
T Consensus 610 -----ts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~-~~~~d~il~l~~ 653 (659)
T TIGR00954 610 -----TSAVSVDVEGYMYRLCREFGITLFSVSHRKSL-WKYHEYLLYMDG 653 (659)
T ss_pred -----ccCCCHHHHHHHHHHHHHcCCEEEEEeCchHH-HHhCCEEEEEeC
Confidence 444443322211111001 1469999999997 478999999984
No 357
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=2.9e-17 Score=137.36 Aligned_cols=168 Identities=14% Similarity=0.186 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC--------CcchhhhhHHHHHHHHhc---c
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ--------PRRVAAMSVAKRVAEEFG---C 206 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~--------~~~i~~~~~~~~v~~~~~---~ 206 (350)
.+..-+|..+.++|+.++++||+|+||||+++.+..+. .+.+|...+.+ |..-+.......+...+. .
T Consensus 15 ~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle-~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~l 93 (242)
T COG4161 15 HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNL 93 (242)
T ss_pred chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHh-CCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhcc
Confidence 45566788889999999999999999999999888776 56688765532 111111112222221111 0
Q ss_pred --------------------cccchhhhh---hhcccCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 207 --------------------RLGQEVGYT---IRFEDCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 207 --------------------~~~~~v~~~---~~~~~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
...+..... +...... ..++-.-.|||||+||++|||||+.+|.++++|||
T Consensus 94 wphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdep----- 168 (242)
T COG4161 94 WPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEP----- 168 (242)
T ss_pred CchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCc-----
Confidence 000000001 1111111 12234458999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCcccc-----cceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA-----WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..+++-......+.+ .+ .+-++.||..|.+-.++..++.+..|.+.+.
T Consensus 169 ----------------taaldpeitaqvv~iikel~~tg-itqvivthev~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 169 ----------------TAALDPEITAQIVSIIKELAETG-ITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred ----------------ccccCHHHHHHHHHHHHHHHhcC-ceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence 4444443322111110 01 3457889999999999999999999999764
No 358
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.69 E-value=2.5e-17 Score=167.14 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=77.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--c--------chhhh---------hHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--R--------RVAAM---------SVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--~--------~i~~~---------~~~~~v 200 (350)
..+++..++++|+.++|+|++||||||+++.++++.. +.+|+|.+... + .++++ ++.+++
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI 428 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD-PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNL 428 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHH
Confidence 5778899999999999999999999999999999984 56899877421 1 11111 222333
Q ss_pred HHHhcccccchhhhhhhc------cc-CC-Cccccc----cccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 201 AEEFGCRLGQEVGYTIRF------ED-CT-SSETLI----KYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 201 ~~~~~~~~~~~v~~~~~~------~~-~~-~~~~~i----~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
.........+++....+. .. .+ ..++.+ ..||||||||++||||++.+|+++|||||
T Consensus 429 ~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~ 497 (529)
T TIGR02868 429 RLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEP 497 (529)
T ss_pred hccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 321111011112111111 11 11 112322 46999999999999999999999999999
No 359
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.69 E-value=2.5e-17 Score=182.93 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=104.9
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcc------------hhhh---------hHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRR------------VAAM---------SVAK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~------------i~~~---------~~~~ 198 (350)
+.+++...+++|++++|+|+|||||||++++++++.. +.+|+|.+.+... ++++ ++.+
T Consensus 400 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e 478 (1466)
T PTZ00265 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD-PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN 478 (1466)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc-CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence 5678899999999999999999999999999999984 5589988732111 1111 1223
Q ss_pred HHHHHhcc---------------------------------------------------------cccchhhhhhh----
Q psy9590 199 RVAEEFGC---------------------------------------------------------RLGQEVGYTIR---- 217 (350)
Q Consensus 199 ~v~~~~~~---------------------------------------------------------~~~~~v~~~~~---- 217 (350)
++...... ...+.+....+
T Consensus 479 NI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l 558 (1466)
T PTZ00265 479 NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLI 558 (1466)
T ss_pred HHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCc
Confidence 33221000 00000100000
Q ss_pred --cc-cCCC-----ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccC
Q psy9590 218 --FE-DCTS-----SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKY 289 (350)
Q Consensus 218 --~~-~~~~-----~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~ 289 (350)
+. ..+. .......|||||+||++||||++.+|++|||||| +-.+|......
T Consensus 559 ~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEp---------------------TSaLD~~se~~ 617 (1466)
T PTZ00265 559 HDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEA---------------------TSSLDNKSEYL 617 (1466)
T ss_pred HHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc---------------------ccccCHHHHHH
Confidence 00 0000 1233558999999999999999999999999999 44444433222
Q ss_pred Cccccc-----ceeEEEEEecccccccccCCEEEEEeCCe
Q psy9590 290 EEPNAW-----RISRVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 290 ~~~~~~-----~~~~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
....+. +-+++|+.||..++. ..+|.++|++.|.
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCc
Confidence 211111 015799999999986 7899999999984
No 360
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.68 E-value=4.2e-17 Score=168.97 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=107.2
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch----------------hh----------h
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV----------------AA----------M 194 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i----------------~~----------~ 194 (350)
.+++..++++|++++|+|+|||||||++++++|... +.+|++.+.. ..+ .+ .
T Consensus 24 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g-~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 24 LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-PTSGTYRVAG-QDVATLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECC-EEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 455677899999999999999999999999999984 5578776632 111 11 1
Q ss_pred hHHHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 195 SVAKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 195 ~~~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+..+++.... +.. ..+.+...++..+... .++.+..||+||+||+.||++|+.+|+++|+|||
T Consensus 102 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP---------- 171 (648)
T PRK10535 102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEP---------- 171 (648)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC----------
Confidence 1122222110 100 0011222222222222 2466779999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccc---ccc-eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPN---AWR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~---~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
...+++...+..... .++ -+++|++||..+.. ..+|.+++++.|++.+.
T Consensus 172 -----------~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~-~~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 172 -----------TGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA-AQAERVIEIRDGEIVRN 224 (648)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HhCCEEEEEECCEEEee
Confidence 333443332222110 001 15699999999976 57999999999998644
No 361
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.6e-17 Score=142.56 Aligned_cols=171 Identities=17% Similarity=0.192 Sum_probs=105.1
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC-CCcEEEE----------------------cCCcchhhhh
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT-ARGKIGC----------------------TQPRRVAAMS 195 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~-~~G~i~~----------------------~~~~~i~~~~ 195 (350)
.+.+.+...++.|++.+|.||||||||||...++|...+. ++|.|.+ +.|.++..+.
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~ 97 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVT 97 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCee
Confidence 3456677899999999999999999999999999976533 4677755 2344444444
Q ss_pred HHHHHHHHhccccc---------chhhhhhhcccCCC---ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 196 VAKRVAEEFGCRLG---------QEVGYTIRFEDCTS---SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 196 ~~~~v~~~~~~~~~---------~~v~~~~~~~~~~~---~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
...++....+...+ ..+.......+... .+..-.-+|||+++|..|+..++.+|++.||||| .--++
T Consensus 98 ~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~-DSGLD 176 (251)
T COG0396 98 NSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEP-DSGLD 176 (251)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCC-CcCcc
Confidence 44444332222111 11111111111111 1112236999999999999999999999999999 11111
Q ss_pred cccccChhHHHhhhhcCcccceeccCCcccccceeEEEEEeccccccccc-CCEEEEEeCCeee
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATNIAETSLTI-DGIFYVVDPGFVK 326 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~sT~iae~s~ti-~d~~~vid~G~~~ 326 (350)
-|.|-.+.+.-+.+. .. -+.+++-||..+-.--| ||.++|+=.|++.
T Consensus 177 Idalk~V~~~i~~lr----------~~------~~~~liITHy~rll~~i~pD~vhvl~~GrIv 224 (251)
T COG0396 177 IDALKIVAEGINALR----------EE------GRGVLIITHYQRLLDYIKPDKVHVLYDGRIV 224 (251)
T ss_pred HHHHHHHHHHHHHHh----------cC------CCeEEEEecHHHHHhhcCCCEEEEEECCEEE
Confidence 111111111111110 00 14589999987766554 6999999999984
No 362
>PLN03130 ABC transporter C family member; Provisional
Probab=99.67 E-value=7.2e-17 Score=180.84 Aligned_cols=165 Identities=17% Similarity=0.149 Sum_probs=107.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCC-cEEEEc-------CCcchhhhhHHHHHHHHhcccccch
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTAR-GKIGCT-------QPRRVAAMSVAKRVAEEFGCRLGQE 211 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~-G~i~~~-------~~~~i~~~~~~~~v~~~~~~~~~~~ 211 (350)
..+++...+++|+.++|+|++||||||+++.++|+..+. + |.|.+. |..-+..-++.+++...... ..+.
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~-~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~-d~e~ 709 (1622)
T PLN03130 632 TLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR-SDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPF-DPER 709 (1622)
T ss_pred eeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC-CCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcc-cHHH
Confidence 356788899999999999999999999999999998544 5 777542 22223333445555421110 0011
Q ss_pred hhhhh-------hcccCCC-ccc----cccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhc
Q psy9590 212 VGYTI-------RFEDCTS-SET----LIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKN 279 (350)
Q Consensus 212 v~~~~-------~~~~~~~-~~~----~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~ 279 (350)
....+ .+...+. .++ +-..||||||||++||||+..+|+++||||| +
T Consensus 710 y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEp---------------------t 768 (1622)
T PLN03130 710 YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDP---------------------L 768 (1622)
T ss_pred HHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCC---------------------c
Confidence 11111 1111111 112 2346999999999999999999999999999 4
Q ss_pred CcccceeccCCcc----cccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 280 QRLEPLYNKYEEP----NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 280 ~~v~~~~~~~~~~----~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
-.+|....+.... ...+-+++|+.||..+. +.-+|.+++++.|++.+.
T Consensus 769 SALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~-l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 769 SALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHF-LSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred cccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhH-HHhCCEEEEEeCCEEEEe
Confidence 4444332221110 01112679999999975 577999999999998753
No 363
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.67 E-value=4.9e-17 Score=181.89 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=107.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~~ 199 (350)
+.+++...+++|+.++|+|+|||||||+++.++++.. +.+|+|.+..- ++++.+ ++.++
T Consensus 1301 vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~-~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~N 1379 (1522)
T TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE-SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN 1379 (1522)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc-CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHH
Confidence 6778999999999999999999999999999999984 55899877421 111111 12222
Q ss_pred HHHHhcccccchhhhhhhc------c-cC-CCccccc----cccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRF------E-DC-TSSETLI----KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~------~-~~-~~~~~~i----~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.. ++....+++...++. . .. ...++.+ ..||+|||||++||||++.+|++||||||
T Consensus 1380 Ldp-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEa---------- 1448 (1522)
T TIGR00957 1380 LDP-FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEA---------- 1448 (1522)
T ss_pred cCc-ccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECC----------
Confidence 210 011011111111111 0 01 1122333 46999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|..-.......+ .+-++||+-+|-.++... +|.++|+|.|++.+.
T Consensus 1449 -----------TSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1449 -----------TAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEF 1500 (1522)
T ss_pred -----------cccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEE
Confidence 4444433221111111 112689999999998754 799999999999653
No 364
>PLN03232 ABC transporter C family member; Provisional
Probab=99.67 E-value=6.7e-17 Score=180.59 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=106.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEE--------EEcCCcchhhhhHHHHHHHHhcccccch
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKI--------GCTQPRRVAAMSVAKRVAEEFGCRLGQE 211 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i--------~~~~~~~i~~~~~~~~v~~~~~~~~~~~ 211 (350)
..+++...+++|+.++|+|++||||||+++.++|+..+. +|.+ .+.|..-+..-++.+++...... ..+.
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~-~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~-~~e~ 709 (1495)
T PLN03232 632 TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA-ETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDF-ESER 709 (1495)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc-CCCEEEecCcEEEEcCccccccccHHHHhhcCCcc-CHHH
Confidence 356788899999999999999999999999999998544 4432 22233233334555555422110 0001
Q ss_pred hhhhh-------hcccCCC-cccc----ccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhc
Q psy9590 212 VGYTI-------RFEDCTS-SETL----IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKN 279 (350)
Q Consensus 212 v~~~~-------~~~~~~~-~~~~----i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~ 279 (350)
....+ .+...+. .++. -..||||||||++||||++++|+++||||| +
T Consensus 710 ~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp---------------------t 768 (1495)
T PLN03232 710 YWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP---------------------L 768 (1495)
T ss_pred HHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC---------------------c
Confidence 11000 1111111 1122 347999999999999999999999999999 4
Q ss_pred CcccceeccCCccc----ccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 280 QRLEPLYNKYEEPN----AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 280 ~~v~~~~~~~~~~~----~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
-.+|....+....+ ..+-+++|+.||..+. +..+|.++++++|++.+.
T Consensus 769 SaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~-l~~aD~Ii~L~~G~i~~~ 820 (1495)
T PLN03232 769 SALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHF-LPLMDRIILVSEGMIKEE 820 (1495)
T ss_pred cccCHHHHHHHHHHHhhhhhcCCEEEEEECChhh-HHhCCEEEEEeCCEEEEe
Confidence 44443322211111 1112679999999986 577999999999998754
No 365
>PTZ00243 ABC transporter; Provisional
Probab=99.67 E-value=3e-17 Score=183.44 Aligned_cols=164 Identities=18% Similarity=0.269 Sum_probs=106.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhh---------------------hHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAM---------------------SVAK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~---------------------~~~~ 198 (350)
+.+++..+|++||.++|+|+|||||||+++.++++.. +.+|.|.+. ...+..+ ++.+
T Consensus 1325 vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-p~~G~I~ID-G~di~~i~l~~LR~~I~iVpQdp~LF~gTIre 1402 (1560)
T PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-VCGGEIRVN-GREIGAYGLRELRRQFSMIPQDPVLFDGTVRQ 1402 (1560)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEC-CEEcccCCHHHHHhcceEECCCCccccccHHH
Confidence 5778999999999999999999999999999999985 558998774 2222111 2223
Q ss_pred HHHHHhcccccchhhhhhhccc-------CC-Cccccc----cccChhHHHHHHHHhhcCCC-CcEEEEcCCCccccccc
Q psy9590 199 RVAEEFGCRLGQEVGYTIRFED-------CT-SSETLI----KYMTDGMLLRECLVDLDLNN-YSVIMLDEAHERTIHTD 265 (350)
Q Consensus 199 ~v~~~~~~~~~~~v~~~~~~~~-------~~-~~~~~i----~~lS~G~~qr~~ia~all~~-~~viIlDEpher~~~~d 265 (350)
++.. ++....+++...++..+ .. ..++.+ ..||||||||++|||||+++ |++||||||
T Consensus 1403 NIdp-~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEA-------- 1473 (1560)
T PTZ00243 1403 NVDP-FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEA-------- 1473 (1560)
T ss_pred HhCc-ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCC--------
Confidence 3321 00001111211111110 10 112222 46999999999999999995 899999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|..........+ .+-++||+.+|-+++. .-+|.++|+|.|++.+.
T Consensus 1474 -------------TSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti-~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1474 -------------TANIDPALDRQIQATVMSAFSAYTVITIAHRLHTV-AQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred -------------CccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEE
Confidence 3333333222211111 1125799999999876 56899999999999753
No 366
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.67 E-value=6.3e-17 Score=134.74 Aligned_cols=110 Identities=17% Similarity=0.255 Sum_probs=70.6
Q ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhH---HHHHHHHh-------cc-----cccc
Q psy9590 146 KAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSV---AKRVAEEF-------GC-----RLGQ 210 (350)
Q Consensus 146 ~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~---~~~v~~~~-------~~-----~~~~ 210 (350)
..+.+|++++|+|+|||||||+++.+++... +.+|.|.+. ...+..... ...++... +. ....
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-~~~G~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~ 83 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-PDSGSILIN-GKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDE 83 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSSH-ESEEEEEET-TEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHH
T ss_pred EEEcCCCEEEEEccCCCccccceeeeccccc-ccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 3578999999999999999999999999884 458998774 222221111 00000000 00 0001
Q ss_pred hhhhhhhcccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 211 EVGYTIRFEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 211 ~v~~~~~~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
.+...+...... ..+.....||+||+||++||++++.+|+++|||||
T Consensus 84 ~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 84 RIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp HHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111122222211 12234489999999999999999999999999999
No 367
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.67 E-value=2.1e-16 Score=134.72 Aligned_cols=117 Identities=20% Similarity=0.228 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchh--------------------hhhHHH
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVA--------------------AMSVAK 198 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~--------------------~~~~~~ 198 (350)
.+.+.+.+.++.|+.++++|.|||||||+.+++.|.. .|++|+|.+... .+. ......
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi-~PTsG~il~n~~-~L~~~Dy~~R~k~IRMiFQDpnts~NPRl 104 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEILINDH-PLHFGDYSFRSKRIRMIFQDPNTSLNPRL 104 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc-CCCCceEEECCc-cccccchHhhhhheeeeecCCccccChhh
Confidence 3455677889999999999999999999999999998 466899877421 111 111122
Q ss_pred HHHHHhcccc-----------cchhhhhhhcccCCCc--cccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 199 RVAEEFGCRL-----------GQEVGYTIRFEDCTSS--ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 199 ~v~~~~~~~~-----------~~~v~~~~~~~~~~~~--~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
++.+.+..+. .+.+-..++..+..+. +-.+..||.||+||+++||||+.+|++||.||+
T Consensus 105 ~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeA 176 (267)
T COG4167 105 RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEA 176 (267)
T ss_pred hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhh
Confidence 3333322211 1122222333333332 356778999999999999999999999999998
No 368
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.67 E-value=5e-17 Score=167.62 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=108.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC--CCcEEEEcCCc------------------chhhhhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT--ARGKIGCTQPR------------------RVAAMSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~--~~G~i~~~~~~------------------~i~~~~~~~~ 199 (350)
+.+++...+++|++++|+||||||||||++.+.|..... .+|+|.+.... -...+++.+.
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~ 119 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREH 119 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHH
Confidence 466788899999999999999999999999999976432 26777653210 1112233344
Q ss_pred HHHHhcccc---------cchhhhhhhcccCCC-ccccc------cccChhHHHHHHHHhhcCCCCcEEEEcCCCccccc
Q psy9590 200 VAEEFGCRL---------GQEVGYTIRFEDCTS-SETLI------KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 200 v~~~~~~~~---------~~~v~~~~~~~~~~~-~~~~i------~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~ 263 (350)
+........ ...+...++..+... .++.+ +.+|||||||+.||++|+.+|+++++|||
T Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP------ 193 (617)
T TIGR00955 120 LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP------ 193 (617)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC------
Confidence 332111110 012222333322221 23443 36999999999999999999999999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCcccccc----eeEEEEEecccc-cccccCCEEEEEeCCeee
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR----ISRVVIATNIAE-TSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~----~~~vi~sT~iae-~s~ti~d~~~vid~G~~~ 326 (350)
+.++|............+ -++||++||... ....++|.+++++.|++.
T Consensus 194 ---------------tsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v 246 (617)
T TIGR00955 194 ---------------TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA 246 (617)
T ss_pred ---------------CcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE
Confidence 444444433222111111 157999999986 567899999999999774
No 369
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.66 E-value=1e-16 Score=178.86 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHH
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAK 198 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~ 198 (350)
.+.+++...|++|+.++|+|+|||||||+++.++++.. .+|+|.+... ++++++ ++.+
T Consensus 1233 ~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~ 1310 (1490)
T TIGR01271 1233 AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK 1310 (1490)
T ss_pred ceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHH
Confidence 35788999999999999999999999999999999974 5899876421 111111 1222
Q ss_pred HHHHHhcccccchhhhhhhcc-------cCC-Cccccc----cccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 199 RVAEEFGCRLGQEVGYTIRFE-------DCT-SSETLI----KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 199 ~v~~~~~~~~~~~v~~~~~~~-------~~~-~~~~~i----~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
++.. ++....+.+...++.. ... ..++.+ ..||+|||||++|||||+.+|++||||||
T Consensus 1311 NLdp-~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEa--------- 1380 (1490)
T TIGR01271 1311 NLDP-YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEP--------- 1380 (1490)
T ss_pred HhCc-ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCC---------
Confidence 2211 0100011111111110 110 112222 36999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.+|..-.......+ .+-++||+.||-.++... +|.++|+|.|++.+
T Consensus 1381 ------------TS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1381 ------------SAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQ 1431 (1490)
T ss_pred ------------cccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEE
Confidence 4444433222111111 112579999999998754 89999999999965
No 370
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.65 E-value=1e-16 Score=155.01 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=110.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-----------Ccchhhhh---------HHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-----------PRRVAAMS---------VAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-----------~~~i~~~~---------~~~~ 199 (350)
..+++.+++..|+.++|+||+|||||||.+.+.|.. .+.+|.|.... .+.+.|++ ++++
T Consensus 351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeN 429 (580)
T COG4618 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAEN 429 (580)
T ss_pred ceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHH
Confidence 467899999999999999999999999999999987 45688885531 23344443 4566
Q ss_pred HHHHhcccccchh---------hhh-hhcccCCCccccc----cccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 200 VAEEFGCRLGQEV---------GYT-IRFEDCTSSETLI----KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 200 v~~~~~~~~~~~v---------~~~-~~~~~~~~~~~~i----~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
++..-.....+.| .+. +++-+ ..++.+ ..||||||||+.+|||+..+|.+++||||
T Consensus 430 IaRf~~~~d~~kIieAA~lAgvHelIl~lP~--GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEP-------- 499 (580)
T COG4618 430 IARFGEEADPEKVIEAARLAGVHELILRLPQ--GYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEP-------- 499 (580)
T ss_pred HHhccccCCHHHHHHHHHHcChHHHHHhCcC--CccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCC--------
Confidence 6643322211111 111 11111 122333 37999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCeeeeEeeecCC
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKT 334 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~~~ 334 (350)
.-.+|..=.......+. +=..+|+.||=.. .+..+|.+.|+++|.+ ..|.++.
T Consensus 500 -------------NsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs-~L~~~Dkilvl~~G~~--~~FG~r~ 556 (580)
T COG4618 500 -------------NSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS-ALASVDKILVLQDGRI--AAFGPRE 556 (580)
T ss_pred -------------CCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH-HHhhcceeeeecCChH--HhcCCHH
Confidence 22222110000000000 1146899999877 4477899999999998 6676654
No 371
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.65 E-value=1.5e-16 Score=178.10 Aligned_cols=165 Identities=14% Similarity=0.157 Sum_probs=107.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc-------CCcchhhhhHHHHHHHHhcc--cccc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT-------QPRRVAAMSVAKRVAEEFGC--RLGQ 210 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~-------~~~~i~~~~~~~~v~~~~~~--~~~~ 210 (350)
..+++...+++|++++|+|+|||||||+++.++|+.. +.+|+|.+. |...+...++.+++...... ...+
T Consensus 653 ~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~-~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~ 731 (1522)
T TIGR00957 653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQ 731 (1522)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-cCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHH
Confidence 4567888999999999999999999999999999984 457877542 22122223444555421110 0000
Q ss_pred hhhhh---hh-cccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCc
Q psy9590 211 EVGYT---IR-FEDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQR 281 (350)
Q Consensus 211 ~v~~~---~~-~~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~ 281 (350)
.+-.. .. +.... ....+...|||||+||++||||++.+|++++|||| +-.
T Consensus 732 ~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp---------------------~sa 790 (1522)
T TIGR00957 732 QVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP---------------------LSA 790 (1522)
T ss_pred HHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCC---------------------ccc
Confidence 11000 00 11111 11234568999999999999999999999999999 334
Q ss_pred ccceeccCCcccc------cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 282 LEPLYNKYEEPNA------WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 282 v~~~~~~~~~~~~------~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+|....+...... .+-+++|++||..+... .+|.+++++.|++.+
T Consensus 791 LD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~-~~D~ii~l~~G~i~~ 841 (1522)
T TIGR00957 791 VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLP-QVDVIIVMSGGKISE 841 (1522)
T ss_pred cCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhh-hCCEEEEecCCeEEe
Confidence 4433222211111 11157999999998764 599999999999864
No 372
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.65 E-value=1.5e-16 Score=150.03 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=108.0
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC----CCcEEEEcCCcchhhhh-------------------
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT----ARGKIGCTQPRRVAAMS------------------- 195 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~----~~G~i~~~~~~~i~~~~------------------- 195 (350)
.+.++|.+++..||.++|+|++|||||-....++++.+.+ .+|+|.+.. ..+-..+
T Consensus 24 ~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G-~dll~~se~~lr~iRG~~I~MIFQEP 102 (534)
T COG4172 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG-EDLLAASERQLRGVRGNKIGMIFQEP 102 (534)
T ss_pred EeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC-hhhhcCCHHHHhhhcccceEEEeccc
Confidence 4567889999999999999999999999999999987542 256775532 1111111
Q ss_pred ---------HHHHHHHHh----ccc---ccchhhhhhhcccCCCcccc----ccccChhHHHHHHHHhhcCCCCcEEEEc
Q psy9590 196 ---------VAKRVAEEF----GCR---LGQEVGYTIRFEDCTSSETL----IKYMTDGMLLRECLVDLDLNNYSVIMLD 255 (350)
Q Consensus 196 ---------~~~~v~~~~----~~~---~~~~v~~~~~~~~~~~~~~~----i~~lS~G~~qr~~ia~all~~~~viIlD 255 (350)
+.+.+++.. +.. ....+-..++..+....+.+ ..+|||||+||++||.||+.+|+++|.|
T Consensus 103 MtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIAD 182 (534)
T COG4172 103 MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIAD 182 (534)
T ss_pred ccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeec
Confidence 111121111 110 00111122222333333322 3489999999999999999999999999
Q ss_pred CCCccccccccccChhHHHhhhhcCcccceeccCCc---------ccccceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 256 EAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEE---------PNAWRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 256 Epher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~---------~~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
|| +..+++....... -.+ .+++-||++--.-.++|++||+..|.+.
T Consensus 183 EP---------------------TTALDVtvQaQIL~Ll~~Lq~~~gM----a~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 183 EP---------------------TTALDVTVQAQILDLLKELQAELGM----AILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred CC---------------------cchhhhhhHHHHHHHHHHHHHHhCc----EEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99 4444433221110 012 3899999999999999999999999997
Q ss_pred eE
Q psy9590 327 QK 328 (350)
Q Consensus 327 ~~ 328 (350)
|.
T Consensus 238 E~ 239 (534)
T COG4172 238 ET 239 (534)
T ss_pred ec
Confidence 65
No 373
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.65 E-value=1.2e-16 Score=164.40 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHH--HcccccCCCCCeeEEEEeecccceeeecCeEEEee
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQ--TRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 78 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q--~~~~~~~~~~~rkvilatniaets~ti~~i~~viD 78 (350)
|+||.+|++.+++.|.+.. +.+.++||||+|+..+| +++| +.|.|||++||||||+|||||||++|||
T Consensus 401 Flpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~eq~l~~ff---~~gk~kILVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 401 FVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNIDEILEKVY---SSKNPSIIISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred EECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHHHHHHHHh---ccCceeEEeccChhhccccccCeeEEEE
Confidence 8999999999988886532 35789999999998766 4444 3578999999999999999999999999
Q ss_pred CCceeeeeeeccccccccccccCCCCccchhhhhcCCCccccCCccch
Q psy9590 79 PGFVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKKSSFGKKTNL 126 (350)
Q Consensus 79 ~g~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~~~~~~~~~~ 126 (350)
+|++|.+. +..|+ ..|+|+++..+|++++|+. ..|.+.++
T Consensus 471 ~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~--~~G~c~rL 510 (675)
T PHA02653 471 TGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRV--SPGTYVYF 510 (675)
T ss_pred CCCccCCC--cccCc----ccccCHHHHHHhccCcCCC--CCCeEEEE
Confidence 99988663 55565 3599999999999999875 44666543
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.65 E-value=1.5e-16 Score=159.35 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=109.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHH-----------HHHHHHhcccc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVA-----------KRVAEEFGCRL 208 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~-----------~~v~~~~~~~~ 208 (350)
+.+++...+..|+.++|+||||+|||||++.+++..+.. +|.|.+...-.+++..+. +.+........
T Consensus 337 l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~ 415 (530)
T COG0488 337 LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD 415 (530)
T ss_pred eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc
Confidence 455788899999999999999999999999999987544 888877655444444332 22222221111
Q ss_pred cchhhhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh-HHHhhhhcCcccce
Q psy9590 209 GQEVGYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT-KLSKFKKNQRLEPL 285 (350)
Q Consensus 209 ~~~v~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l-~~~~~~~~~~v~~~ 285 (350)
...+...+.-+... ...+++..||||||.|+.+|..++.+|.+||||||-.+ ++.|.+-.+. .+.+|-
T Consensus 416 e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNh-LDi~s~~aLe~aL~~f~-------- 486 (530)
T COG0488 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNH-LDIESLEALEEALLDFE-------- 486 (530)
T ss_pred HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCcc-CCHHHHHHHHHHHHhCC--------
Confidence 12222222222222 22478899999999999999999999999999999221 2222222211 111111
Q ss_pred eccCCcccccceeEEEEEecccccccccCCEEEEEeC
Q psy9590 286 YNKYEEPNAWRISRVVIATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 286 ~~~~~~~~~~~~~~vi~sT~iae~s~ti~d~~~vid~ 322 (350)
-+||+.||+-+..-.+++.++++..
T Consensus 487 ------------Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 487 ------------GTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred ------------CeEEEEeCCHHHHHhhcceEEEEcC
Confidence 3599999999999999999999997
No 375
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.65 E-value=1.5e-16 Score=177.59 Aligned_cols=165 Identities=17% Similarity=0.141 Sum_probs=106.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc-------CCcchhhhhHHHHHHHHhccc--ccc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT-------QPRRVAAMSVAKRVAEEFGCR--LGQ 210 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~-------~~~~i~~~~~~~~v~~~~~~~--~~~ 210 (350)
..+++...+++|++++|+|||||||||+++.++|+.. +.+|.|.+. |...+...++.+++....... ...
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~ 519 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-PSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYT 519 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHH
Confidence 4567888999999999999999999999999999984 457877542 111122234555554211100 000
Q ss_pred hhhh------hhhcc---cCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCc
Q psy9590 211 EVGY------TIRFE---DCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQR 281 (350)
Q Consensus 211 ~v~~------~~~~~---~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~ 281 (350)
.+-. .+... +......+...||||||||++||||++.+|+++||||| ...
T Consensus 520 ~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep---------------------~sa 578 (1490)
T TIGR01271 520 SVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP---------------------FTH 578 (1490)
T ss_pred HHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCC---------------------ccc
Confidence 1100 01000 11112234568999999999999999999999999999 333
Q ss_pred ccceeccCCccc----ccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 282 LEPLYNKYEEPN----AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 282 v~~~~~~~~~~~----~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+|....+..... ..+-++||++||..+.. ..+|.+++++.|.+..
T Consensus 579 LD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~-~~ad~ii~l~~g~i~~ 627 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLMSNKTRILVTSKLEHL-KKADKILLLHEGVCYF 627 (1490)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHH-HhCCEEEEEECCEEEE
Confidence 333222211110 01125799999999976 5699999999998753
No 376
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=7.4e-17 Score=140.54 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=100.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcc--hhhhhHHHH---------HHHHh----
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRR--VAAMSVAKR---------VAEEF---- 204 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~--i~~~~~~~~---------v~~~~---- 204 (350)
+.+++..++.+||+.+|+||||+||||+++.+.|+.. +++|++.+.+... ......++. +++.|
T Consensus 16 ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~e 94 (259)
T COG4559 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQE 94 (259)
T ss_pred eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHH
Confidence 3556777899999999999999999999999999984 5588987754311 111111111 11111
Q ss_pred ----cc-cc--cch-------hhhhhhcccCCC-ccccccccChhHHHHHHHHhhcC------CCCcEEEEcCCCccccc
Q psy9590 205 ----GC-RL--GQE-------VGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDL------NNYSVIMLDEAHERTIH 263 (350)
Q Consensus 205 ----~~-~~--~~~-------v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all------~~~~viIlDEpher~~~ 263 (350)
|. +. +.+ ....+...+... ..+....||||++||+.+||.|+ .++++++||||
T Consensus 95 VV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEP------ 168 (259)
T COG4559 95 VVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEP------ 168 (259)
T ss_pred HHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCC------
Confidence 00 00 000 011111111111 12445589999999999999883 33458999999
Q ss_pred cccccChhHHHhhhhcCcccceeccCCcc---cccce-eEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 264 TDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRI-SRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 264 ~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~-~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+-.+++........ ..|+- -.|+.-=|++.-.-..+|.++++..|++.
T Consensus 169 ---------------tsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~ 220 (259)
T COG4559 169 ---------------TSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI 220 (259)
T ss_pred ---------------ccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEe
Confidence 33333322111100 00000 23777789999888999999999999984
No 377
>PTZ00243 ABC transporter; Provisional
Probab=99.64 E-value=1.6e-16 Score=177.69 Aligned_cols=165 Identities=19% Similarity=0.163 Sum_probs=105.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc-------CCcchhhhhHHHHHHHHhcc---ccc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT-------QPRRVAAMSVAKRVAEEFGC---RLG 209 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~-------~~~~i~~~~~~~~v~~~~~~---~~~ 209 (350)
+.+++...+++|++++|+|+|||||||+++.++|+.. +.+|.|.+. |...+...++.+++...... ...
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~ 753 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLA 753 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHH
Confidence 3557788999999999999999999999999999984 457876542 11112223444444321000 000
Q ss_pred ch-----hhhhhhcc---cCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCc
Q psy9590 210 QE-----VGYTIRFE---DCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQR 281 (350)
Q Consensus 210 ~~-----v~~~~~~~---~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~ 281 (350)
+. +...+... .......+...||||||||++||||++.+|+++||||| ...
T Consensus 754 ~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP---------------------~sa 812 (1560)
T PTZ00243 754 DAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDP---------------------LSA 812 (1560)
T ss_pred HHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCc---------------------ccc
Confidence 00 00001100 01112345668999999999999999999999999999 333
Q ss_pred ccceeccCCccc----ccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 282 LEPLYNKYEEPN----AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 282 v~~~~~~~~~~~----~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+|....+..... ..+-+++|++||..+.. ..+|.+++++.|++..
T Consensus 813 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~ 861 (1560)
T PTZ00243 813 LDAHVGERVVEECFLGALAGKTRVLATHQVHVV-PRADYVVALGDGRVEF 861 (1560)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEE
Confidence 333221111000 00114699999999986 6799999999999853
No 378
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.64 E-value=4e-16 Score=131.72 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=96.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhh-------------------------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS------------------------- 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~------------------------- 195 (350)
.+++...++.||.++|+||+||||||++-.+.|+. .+++|.|... ...+..+.
T Consensus 26 L~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-~~ssGeV~l~-G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l 103 (228)
T COG4181 26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD-DPSSGEVRLL-GQPLHKLDEDARAALRARHVGFVFQSFHLIPNL 103 (228)
T ss_pred eecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC-CCCCceEEEc-CcchhhcCHHHHHHhhccceeEEEEeeeccccc
Confidence 34556678999999999999999999999999988 4568888653 11111111
Q ss_pred -HHHHHHHH---hcccccch---hhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 196 -VAKRVAEE---FGCRLGQE---VGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 196 -~~~~v~~~---~~~~~~~~---v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
..++++-. .|....+. ....+.-.+... ......+||||++||++||||++..|+++|.|||
T Consensus 104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEP---------- 173 (228)
T COG4181 104 TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEP---------- 173 (228)
T ss_pred hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCC----------
Confidence 11111110 00000000 000000000100 1123458999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcc-----cccceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEP-----NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+-.++.---+.... +.-.=.+.|+.||+..-+ .-|++.+-+.+|.+.
T Consensus 174 -----------TGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA-~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 174 -----------TGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA-ARCDRQLRLRSGRLV 225 (228)
T ss_pred -----------CCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH-Hhhhheeeeecceec
Confidence 22222111110000 000014689999998766 568999999999874
No 379
>KOG0056|consensus
Probab=99.64 E-value=2.2e-16 Score=151.78 Aligned_cols=165 Identities=15% Similarity=0.220 Sum_probs=108.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhh---HHHHHHHHhc--ccccchhhh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS---VAKRVAEEFG--CRLGQEVGY 214 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~---~~~~v~~~~~--~~~~~~v~~ 214 (350)
..++|.+.+.+|+.++++||+|+||||+++.+..++.. .+|.|.+. ...+.... ....+.-..+ .-..+.+-|
T Consensus 553 vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv-~sGsI~iD-gqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~y 630 (790)
T KOG0056|consen 553 VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV-NSGSITID-GQDIRNVTQSSLRSSIGVVPQDTVLFNDTILY 630 (790)
T ss_pred eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc-cCceEEEc-CchHHHHHHHHHHHhcCcccCcceeecceeee
Confidence 56789999999999999999999999999999998854 48888773 33332222 2111110000 011122222
Q ss_pred hhhccc-----------------------CCC-ccc----cccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 215 TIRFED-----------------------CTS-SET----LIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 215 ~~~~~~-----------------------~~~-~~~----~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
.+++.. .+. .++ +--.||||++||+++||+++.+|.+|+|||+
T Consensus 631 NIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEA--------- 701 (790)
T KOG0056|consen 631 NIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEA--------- 701 (790)
T ss_pred heeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcch---------
Confidence 222211 111 112 2237999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.++..-.+.... ..|.-|+-|+.-|-+.|. .-+|.+.||+.|.+.|.
T Consensus 702 ------------TSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTi-vnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 702 ------------TSALDTNTERAIQAALARLCANRTTIVVAHRLSTI-VNADLILVISNGRIVER 753 (790)
T ss_pred ------------hhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhe-ecccEEEEEeCCeEeec
Confidence 44444433322221 334447777777888877 45899999999999765
No 380
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.63 E-value=6.8e-16 Score=145.71 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=104.2
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhH------H---------------
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSV------A--------------- 197 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~------~--------------- 197 (350)
.+.+++...+..||.++|+|++||||||+-..++.+.. +.|.|.+. ...+...+. .
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~--s~G~I~F~-G~~i~~~~~~~mrplR~~mQvVFQDPygSLs 377 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP--SQGEIRFD-GQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS 377 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC--cCceEEEC-CccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence 35678899999999999999999999999999999873 35888763 222222211 1
Q ss_pred ------HHHHHHhcc--------cccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 198 ------KRVAEEFGC--------RLGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 198 ------~~v~~~~~~--------~~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
+.+.+.+.. ...+.+-..+...+..+ .++-..++||||+||++||||++.+|++|+||||-
T Consensus 378 PRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPT--- 454 (534)
T COG4172 378 PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPT--- 454 (534)
T ss_pred cccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCc---
Confidence 111111100 00011111122222221 22445589999999999999999999999999990
Q ss_pred cccccc-----cChhHHHhhhhcCcccceeccCCcccccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 262 IHTDVL-----FDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 262 ~~~d~l-----l~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
-.-|.- +. .+.+.-..+. -..++-+|++--.-.+|+.+.|+..|++.|.
T Consensus 455 SALD~SVQaQvv~--LLr~LQ~k~~----------------LsYLFISHDL~VvrAl~~~viVm~~GkiVE~ 508 (534)
T COG4172 455 SALDRSVQAQVLD--LLRDLQQKHG----------------LSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508 (534)
T ss_pred hHhhHHHHHHHHH--HHHHHHHHhC----------------CeEEEEeccHHHHHHhhceEEEEeCCEEeee
Confidence 000000 00 0011110111 1368888999988899999999999999764
No 381
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.62 E-value=5.3e-17 Score=139.69 Aligned_cols=171 Identities=14% Similarity=0.114 Sum_probs=112.4
Q ss_pred cchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhh------------------
Q psy9590 134 SLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS------------------ 195 (350)
Q Consensus 134 ~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~------------------ 195 (350)
++.-+.+.+++...+.+|+.-+|+||||+||||++..+.|... +..|++.+.+...+...+
T Consensus 14 sF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-p~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtV 92 (249)
T COG4674 14 SFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-PQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTV 92 (249)
T ss_pred EEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-CCcceEEEcCchhhccCCHHHHHHhccCccccCCee
Confidence 3444556778889999999999999999999999999999884 557888775422222222
Q ss_pred -----HHHHH--HHHhccc------------ccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEc
Q psy9590 196 -----VAKRV--AEEFGCR------------LGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLD 255 (350)
Q Consensus 196 -----~~~~v--~~~~~~~------------~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlD 255 (350)
+.+++ |...... ....+...+........ +.....||.||+|++.|++-++++|++|++|
T Consensus 93 fe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlD 172 (249)
T COG4674 93 FENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLD 172 (249)
T ss_pred hhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEec
Confidence 22221 1100000 00122222222222222 2445689999999999999999999999999
Q ss_pred CCCccccccccccChhHHHhhhhcCcccc---eeccCCcccccceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 256 EAHERTIHTDVLFDPTKLSKFKKNQRLEP---LYNKYEEPNAWRISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 256 Epher~~~~d~ll~~l~~~~~~~~~~v~~---~~~~~~~~~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
|| ..++.. ....+......+-..|++.-|++++.-.|++.+-|+.-|.+.
T Consensus 173 EP---------------------vAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL 225 (249)
T COG4674 173 EP---------------------VAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVL 225 (249)
T ss_pred Cc---------------------cCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecccee
Confidence 99 222211 111000011112257999999999999999999999999774
No 382
>KOG0059|consensus
Probab=99.62 E-value=2e-16 Score=168.63 Aligned_cols=165 Identities=17% Similarity=0.174 Sum_probs=122.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-------------chhhhhHH---------
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-------------RVAAMSVA--------- 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-------------~i~~~~~~--------- 197 (350)
+.+++...+++||++|+.|+|||||||.++++.|+.. +++|.+.+. .. .+++.++.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-~t~G~a~i~-g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-PTSGEALIK-GHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc-CCcceEEEe-cCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 5567888999999999999999999999999999984 558887662 21 12333322
Q ss_pred ----HHHHHHhccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 198 ----KRVAEEFGCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 198 ----~~v~~~~~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
+.++...|.+ ..+.+...++..+... .++.++.||||+++|+.+|.|++.+|++++||||
T Consensus 658 rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEP------------ 725 (885)
T KOG0059|consen 658 REHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEP------------ 725 (885)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCC------------
Confidence 3334333422 2233444444444443 3477899999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCcccccce----eEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNAWRI----SRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
..++|+.-++..+....+. +.||++||.+|+...+||+..++..|..+-
T Consensus 726 ---------stGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~c 778 (885)
T KOG0059|consen 726 ---------STGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRC 778 (885)
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEE
Confidence 7777776665444322211 379999999999999999999999998853
No 383
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.61 E-value=4.1e-16 Score=172.96 Aligned_cols=165 Identities=12% Similarity=0.064 Sum_probs=107.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC--CCCcEEEEcCC-------cchhh----------hhHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF--TARGKIGCTQP-------RRVAA----------MSVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~--~~~G~i~~~~~-------~~i~~----------~~~~~~v 200 (350)
+.+++...+++|++++|+||||||||||++.+.+.... +.+|+|.+... +.+++ .++.+.+
T Consensus 778 iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L 857 (1394)
T TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESL 857 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHH
Confidence 46677889999999999999999999999999998742 45688866321 11111 2223333
Q ss_pred HHHhccc---------ccchhhhhhhcccCCC-cccccc----ccChhHHHHHHHHhhcCCCCc-EEEEcCCCccccccc
Q psy9590 201 AEEFGCR---------LGQEVGYTIRFEDCTS-SETLIK----YMTDGMLLRECLVDLDLNNYS-VIMLDEAHERTIHTD 265 (350)
Q Consensus 201 ~~~~~~~---------~~~~v~~~~~~~~~~~-~~~~i~----~lS~G~~qr~~ia~all~~~~-viIlDEpher~~~~d 265 (350)
....... ..+.+...++..+... .++.+. .||+|||||+.||++|+.+|+ +|+||||
T Consensus 858 ~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEP-------- 929 (1394)
T TIGR00956 858 RFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEP-------- 929 (1394)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCC--------
Confidence 2211000 0012223333333322 234444 799999999999999999997 9999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCccccc----ceeEEEEEecccccc-cccCCEEEEEeCC-ee
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETS-LTIDGIFYVVDPG-FV 325 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s-~ti~d~~~vid~G-~~ 325 (350)
+..+|..........+. +-++||++||..++. ...+|.+++++.| ++
T Consensus 930 -------------TsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i 982 (1394)
T TIGR00956 930 -------------TSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQT 982 (1394)
T ss_pred -------------CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE
Confidence 55555443322211111 115799999999874 4679999999987 76
No 384
>PLN03140 ABC transporter G family member; Provisional
Probab=99.60 E-value=6e-16 Score=171.53 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=106.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC-CCCcEEEEcC-C-------cchhh----------hhHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF-TARGKIGCTQ-P-------RRVAA----------MSVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~-~~~G~i~~~~-~-------~~i~~----------~~~~~~v 200 (350)
+.+++...+++|++++|+|+||||||||+++++|.... ..+|+|.+.. + +.+++ +++.+.+
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L 974 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL 974 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence 45678889999999999999999999999999997532 2367776532 1 01111 2233333
Q ss_pred HHHh--ccc--c-----cchhhhhhhcccCCC-ccccc-----cccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 201 AEEF--GCR--L-----GQEVGYTIRFEDCTS-SETLI-----KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 201 ~~~~--~~~--~-----~~~v~~~~~~~~~~~-~~~~i-----~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
.... ..+ . .+.+...++..+... .++.+ +.||||||||+.||++|+.+|++|+||||
T Consensus 975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEP-------- 1046 (1470)
T PLN03140 975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEP-------- 1046 (1470)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCC--------
Confidence 2211 100 0 011223333333322 12333 68999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCccccc---c-eeEEEEEeccccc-ccccCCEEEEEeC-Cee
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAET-SLTIDGIFYVVDP-GFV 325 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~-s~ti~d~~~vid~-G~~ 325 (350)
+..+|..........+. + -++||++||..+. ...++|.+++++. |++
T Consensus 1047 -------------TsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1047 -------------TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred -------------CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 44444433322211111 0 1579999999984 5688999999986 775
No 385
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.5e-15 Score=128.81 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=79.8
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc-CCcchhhh-------------------hHHHHH-
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT-QPRRVAAM-------------------SVAKRV- 200 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~-~~~~i~~~-------------------~~~~~v- 200 (350)
.++..++.+||.+.|.|+||||||||++++.|+. .+.+|+|.+. .+-..... +..+++
T Consensus 19 ~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl-~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~ 97 (209)
T COG4133 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL-RPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLH 97 (209)
T ss_pred cceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc-CCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHH
Confidence 3466789999999999999999999999999998 4568999875 22111111 111111
Q ss_pred --HHHhcccccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 201 --AEEFGCRLGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 201 --~~~~~~~~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
....+......+...+...+.... +.++.+||.||++|++|||-.++..++-|||||
T Consensus 98 F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 98 FWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred HHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 111221112333344444444333 467789999999999999999999999999999
No 386
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.60 E-value=1.4e-15 Score=134.89 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=86.0
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCC--------CcEEEEcCCcchhhhhHHHHHHHH-------hcccc
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTA--------RGKIGCTQPRRVAAMSVAKRVAEE-------FGCRL 208 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~--------~G~i~~~~~~~i~~~~~~~~v~~~-------~~~~~ 208 (350)
+..++.+| +++|+|||||||||+++.+.+..+... .|.+.+. +..........+++.. ++...
T Consensus 16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~vfq~~~~~~~~~~ 93 (197)
T cd03278 16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFA-GSETRKPANFAEVTLTFDNSDGRYSIIS 93 (197)
T ss_pred eeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhcc-CCCCCCCCceEEEEEEEEcCCCceeEEe
Confidence 34467788 999999999999999999988753220 1122211 1000000000000000 11101
Q ss_pred cchhhhhhhcccCCCccccccccChhHHHHHHHHhhcC----CCCcEEEEcCCCccccccccccChhHHHhhhhcCcccc
Q psy9590 209 GQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDL----NNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEP 284 (350)
Q Consensus 209 ~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all----~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~ 284 (350)
...+...+.. ....++.+..||+||+||+++|++++ .+|+++++||| ...+++
T Consensus 94 ~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP---------------------~~~LD~ 150 (197)
T cd03278 94 QGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV---------------------DAALDD 150 (197)
T ss_pred hhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC---------------------cccCCH
Confidence 1122222333 11234677899999999999999985 56799999999 222222
Q ss_pred eeccCCcccc---cceeEEEEEecccccccccCCEEEEEe
Q psy9590 285 LYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 285 ~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid 321 (350)
.........+ .+-.+||++||..+.. .++|.++.|-
T Consensus 151 ~~~~~l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~ 189 (197)
T cd03278 151 ANVERFARLLKEFSKETQFIVITHRKGTM-EAADRLYGVT 189 (197)
T ss_pred HHHHHHHHHHHHhccCCEEEEEECCHHHH-hhcceEEEEE
Confidence 2111110000 0013599999999974 7899888775
No 387
>KOG0921|consensus
Probab=99.60 E-value=5.8e-16 Score=156.75 Aligned_cols=116 Identities=34% Similarity=0.476 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
||||+.+|-.+|..+.+.- ...+.....++|+|+.++.++|++||++.|.|.+|+|++|||||||+||++++||||++
T Consensus 649 flpgwa~i~~L~~~ll~~~--~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~c 726 (1282)
T KOG0921|consen 649 FLPGWAEIMTLCNRLLEHQ--EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSC 726 (1282)
T ss_pred ecCchHHhhhhhhhhhhhh--hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeee
Confidence 8999999999999887543 23455678899999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeeccccccccccccCCCCccchhhhhcCCCcc
Q psy9590 81 FVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKKS 118 (350)
Q Consensus 81 ~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~~ 118 (350)
..|.+.|-....+..-.+.|.|+.+-.|+++++++.+.
T Consensus 727 ka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~ 764 (1282)
T KOG0921|consen 727 KAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP 764 (1282)
T ss_pred eeeeeeeccccceeeeeeecccccchHhhcccCceecc
Confidence 99999999999999999999999999999999986654
No 388
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.59 E-value=6e-16 Score=171.62 Aligned_cols=166 Identities=12% Similarity=0.172 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC---CCCCcEEEEcCC----------cchhh----------hhH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG---FTARGKIGCTQP----------RRVAA----------MSV 196 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~---~~~~G~i~~~~~----------~~i~~----------~~~ 196 (350)
+.+++...+++|++++|+||||||||||++++.|... .+.+|+|.+... +.+++ +++
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV 155 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTV 155 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCH
Confidence 4566778899999999999999999999999999752 235788866321 00111 233
Q ss_pred HHHHHHHhccc--------c-----cch-hhhhhhcccCCCc------cccccccChhHHHHHHHHhhcCCCCcEEEEcC
Q psy9590 197 AKRVAEEFGCR--------L-----GQE-VGYTIRFEDCTSS------ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDE 256 (350)
Q Consensus 197 ~~~v~~~~~~~--------~-----~~~-v~~~~~~~~~~~~------~~~i~~lS~G~~qr~~ia~all~~~~viIlDE 256 (350)
.+.+....... . .+. +...++..+.... +..++.||||||||+.||++|+.+|+++++||
T Consensus 156 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDE 235 (1394)
T TIGR00956 156 GETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDN 235 (1394)
T ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeC
Confidence 33332211100 0 001 1112222232221 23456899999999999999999999999999
Q ss_pred CCccccccccccChhHHHhhhhcCcccceeccCCccc---ccc--eeEEEEEeccc-ccccccCCEEEEEeCCeee
Q psy9590 257 AHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIA-ETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 257 pher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~ia-e~s~ti~d~~~vid~G~~~ 326 (350)
| +..+|.......... ..+ -++||++||.. +....++|.+++++.|++.
T Consensus 236 P---------------------TsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv 290 (1394)
T TIGR00956 236 A---------------------TRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI 290 (1394)
T ss_pred C---------------------CCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE
Confidence 9 445554433222211 111 14699999996 6777899999999999863
No 389
>KOG0054|consensus
Probab=99.58 E-value=1.8e-15 Score=163.23 Aligned_cols=162 Identities=19% Similarity=0.240 Sum_probs=109.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhh---------HHHHHHHHhccccc-
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS---------VAKRVAEEFGCRLG- 209 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~---------~~~~v~~~~~~~~~- 209 (350)
..++|...+++|+.++|+|+.|||||+|+..++|+.. ..+|.+.+... +++.+ +.+++. +|.+..
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~-~~sG~v~v~gs--iaYv~Q~pWI~ngTvreNIL--FG~~~d~ 610 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-KLSGSVAVNGS--VAYVPQQPWIQNGTVRENIL--FGSPYDE 610 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc-cccceEEEcCe--EEEeccccHhhCCcHHHhhh--cCccccH
Confidence 4677889999999999999999999999999999985 44777755321 33333 333333 222211
Q ss_pred ---chhhhh---------hhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhh
Q psy9590 210 ---QEVGYT---------IRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFK 277 (350)
Q Consensus 210 ---~~v~~~---------~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~ 277 (350)
++|-.. +...+.+.-..+-..||||||||+++|||+-++.++++||.|
T Consensus 611 ~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDp-------------------- 670 (1381)
T KOG0054|consen 611 ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDP-------------------- 670 (1381)
T ss_pred HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCc--------------------
Confidence 111111 112222223344458999999999999999999999999999
Q ss_pred hcCcccceeccCCcc----cccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 278 KNQRLEPLYNKYEEP----NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 278 ~~~~v~~~~~~~~~~----~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
.-.||.+..+...+ ...+-+++|+.||..+.. .-+|.++|+++|++.+.
T Consensus 671 -lSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L-~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 671 -LSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFL-PHADQIIVLKDGKIVES 723 (1381)
T ss_pred -chhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhh-hhCCEEEEecCCeEecc
Confidence 33444443332221 111236899999977654 67899999999999765
No 390
>PLN03140 ABC transporter G family member; Provisional
Probab=99.57 E-value=8.7e-16 Score=170.23 Aligned_cols=167 Identities=13% Similarity=0.187 Sum_probs=107.9
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC--CCcEEEEcC--------Ccchhh----------hhHHH
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT--ARGKIGCTQ--------PRRVAA----------MSVAK 198 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~--~~G~i~~~~--------~~~i~~----------~~~~~ 198 (350)
.+.+++...+++|++++|+||||||||||++++.|..... .+|+|.+.. .+.+++ +++.+
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 3566777788999999999999999999999999987432 267775531 011222 23333
Q ss_pred HHHHHhccc-------------ccc---------------------------hhhhhhhcccCCC------ccccccccC
Q psy9590 199 RVAEEFGCR-------------LGQ---------------------------EVGYTIRFEDCTS------SETLIKYMT 232 (350)
Q Consensus 199 ~v~~~~~~~-------------~~~---------------------------~v~~~~~~~~~~~------~~~~i~~lS 232 (350)
.+.....+. ..+ .+.+.+...+... .+..++.+|
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 332211100 000 0112222222221 134567899
Q ss_pred hhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc---ccc--eeEEEEEeccc
Q psy9590 233 DGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIA 307 (350)
Q Consensus 233 ~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~ia 307 (350)
||||||+.||++++.+|+++++||| +.++|.......... .++ -++||++||..
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEP---------------------TsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp 397 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEI---------------------STGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP 397 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCC---------------------CcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 9999999999999999999999999 444444333222111 111 15799999985
Q ss_pred -ccccccCCEEEEEeCCeee
Q psy9590 308 -ETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 308 -e~s~ti~d~~~vid~G~~~ 326 (350)
+....++|.+++++.|++.
T Consensus 398 ~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 398 APETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CHHHHHHhheEEEeeCceEE
Confidence 5777899999999999873
No 391
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.56 E-value=1.7e-14 Score=131.86 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=52.4
Q ss_pred cccccccChhHHHHHHHHhhcC----CCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccce
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDL----NNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRI 297 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all----~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~ 297 (350)
+..+..||+||+||++||++++ .+|+++|+||| +..+++........ ...+-
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp---------------------~~~ld~~~~~~~~~~l~~~~~~ 211 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEI---------------------DAALDAQYRTAVANMIKELSDG 211 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECC---------------------ccCCCHHHHHHHHHHHHHHhCC
Confidence 3567789999999999999995 46899999999 33333332221111 00011
Q ss_pred eEEEEEecccccccccCCEEEEEeC
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vid~ 322 (350)
..||++||..| ...++|.+++++.
T Consensus 212 ~~ii~~~h~~~-~~~~~d~i~~l~~ 235 (243)
T cd03272 212 AQFITTTFRPE-LLEVADKFYGVKF 235 (243)
T ss_pred CEEEEEecCHH-HHhhCCEEEEEEE
Confidence 34788888865 6689999999874
No 392
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.55 E-value=8.5e-16 Score=138.00 Aligned_cols=80 Identities=13% Similarity=0.025 Sum_probs=57.3
Q ss_pred cccccccChhHHHHHHHHhhcCC----------CCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc--
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLN----------NYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP-- 292 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~----------~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~-- 292 (350)
+..+..||+||+||+.+|++++. +|+++|+||| ...+++........
T Consensus 118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp---------------------~~~lD~~~~~~~~~~l 176 (213)
T cd03279 118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEG---------------------FGTLDPEALEAVATAL 176 (213)
T ss_pred cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCC---------------------cccCCHHHHHHHHHHH
Confidence 35567899999999999999974 6789999999 22222221111100
Q ss_pred -cccc-eeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 293 -NAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 293 -~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
...+ -.+||++||+.+....+++..++++.|-.
T Consensus 177 ~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 177 ELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 0000 13699999999999999999999998854
No 393
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2e-14 Score=136.51 Aligned_cols=167 Identities=15% Similarity=0.194 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhh---hHH-----------------
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAM---SVA----------------- 197 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~---~~~----------------- 197 (350)
.....++.+.+..|+.++++|++|+||||+++.+..++. ..+|.|... .+.+-.. +..
T Consensus 276 r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD-~~sG~I~id-~qdir~vtq~slR~aIg~VPQDtvLFNDti 353 (497)
T COG5265 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD-VNSGSITID-GQDIRDVTQQSLRRAIGIVPQDTVLFNDTI 353 (497)
T ss_pred chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC-CcCceEEEc-chhHHHhHHHHHHHHhCcCcccceehhhhH
Confidence 345667888999999999999999999999999999984 458988774 2211111 111
Q ss_pred -HHHHHHhcccccchhhhhh-------hcccCCC-cc----ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 198 -KRVAEEFGCRLGQEVGYTI-------RFEDCTS-SE----TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 198 -~~v~~~~~~~~~~~v~~~~-------~~~~~~~-~~----~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
.++.......-.++++... .+...+. .+ .+--.+|||+|||++|||+++.+|++++|||+
T Consensus 354 ~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~dea------- 426 (497)
T COG5265 354 AYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA------- 426 (497)
T ss_pred HHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehh-------
Confidence 1111000000001111110 0111111 11 22237999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCcccccce---eEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI---SRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~---~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.++.+-.+.....+.++ |+-++--|-+.|... +|.+.|+|+|++.|.
T Consensus 427 --------------tsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~er 478 (497)
T COG5265 427 --------------TSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVER 478 (497)
T ss_pred --------------hhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEec
Confidence 4444443333222211111 555666677777655 689999999999764
No 394
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2.2e-14 Score=121.15 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=75.6
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc-----------CCcc--------hhhhhHHHHH-
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT-----------QPRR--------VAAMSVAKRV- 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~-----------~~~~--------i~~~~~~~~v- 200 (350)
.+++..+++.|||+++-||+|+||||+++++.+.+. +++|+|.+. .|+. +.+.+...++
T Consensus 27 ~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRvi 105 (235)
T COG4778 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVI 105 (235)
T ss_pred eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhc
Confidence 456788999999999999999999999999999985 458988664 1222 2222222111
Q ss_pred ---------HH---Hhccccc---chhhhhhhcccCCCc--cccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 201 ---------AE---EFGCRLG---QEVGYTIRFEDCTSS--ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 201 ---------~~---~~~~~~~---~~v~~~~~~~~~~~~--~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
++ ..|.... ......+...+.+.. .-....+|||++||+.|||.++.++++++||||
T Consensus 106 PRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEP 179 (235)
T COG4778 106 PRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEP 179 (235)
T ss_pred cCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCC
Confidence 11 1111110 011111222222211 123457999999999999999999999999999
No 395
>KOG0927|consensus
Probab=99.47 E-value=3.2e-14 Score=138.74 Aligned_cols=164 Identities=14% Similarity=0.152 Sum_probs=103.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhh------------HHHHHHHHhcc-
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMS------------VAKRVAEEFGC- 206 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~------------~~~~v~~~~~~- 206 (350)
.-.++.+.++.+..++++||||+||||+++.+++.. .+..|.+.-..-..++... ..+++...+..
T Consensus 405 iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl-~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~ 483 (614)
T KOG0927|consen 405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL-QPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDE 483 (614)
T ss_pred hhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc-ccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhcccc
Confidence 345677888899999999999999999999999988 4557766432222222111 11333333331
Q ss_pred cccchhhhhhhcccCC-C-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccc
Q psy9590 207 RLGQEVGYTIRFEDCT-S-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEP 284 (350)
Q Consensus 207 ~~~~~v~~~~~~~~~~-~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~ 284 (350)
...+.+...+...+.. . ...++.+||+|||.|+++|+.++..|.+|+|||| +-.+++
T Consensus 484 ~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP---------------------tnhLDi 542 (614)
T KOG0927|consen 484 KELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEP---------------------TNHLDI 542 (614)
T ss_pred chHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCC---------------------CcCCCc
Confidence 2222233233333333 2 2367889999999999999999999999999999 334443
Q ss_pred eeccCCcccccc-eeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 285 LYNKYEEPNAWR-ISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 285 ~~~~~~~~~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
-+..-..+.+.. -..||+.+|+.-..-.+++.++++.+|++
T Consensus 543 ~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~ 584 (614)
T KOG0927|consen 543 ETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTV 584 (614)
T ss_pred hhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCce
Confidence 332211110000 13478888877766667777777777766
No 396
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.47 E-value=7.5e-14 Score=128.71 Aligned_cols=80 Identities=15% Similarity=0.003 Sum_probs=57.7
Q ss_pred cccccccChhHHHHHHHHhhcCCC---CcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc-e
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLNN---YSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-I 297 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~~---~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~ 297 (350)
+..+..||+||+||+.||++|+.+ |+++||||| +..+++........ ...+ -
T Consensus 164 ~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEP---------------------tsgLD~~~~~~l~~~L~~l~~~g 222 (261)
T cd03271 164 GQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEP---------------------TTGLHFHDVKKLLEVLQRLVDKG 222 (261)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECC---------------------CCCCCHHHHHHHHHHHHHHHhCC
Confidence 466789999999999999999996 799999999 33333222211111 0000 1
Q ss_pred eEEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
.+||++||+.+.. ..+|.++++ +.|++.
T Consensus 223 ~tvIiitH~~~~i-~~aD~ii~Lgp~~g~~~G~iv 256 (261)
T cd03271 223 NTVVVIEHNLDVI-KCADWIIDLGPEGGDGGGQVV 256 (261)
T ss_pred CEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEE
Confidence 4699999999976 679999999 788764
No 397
>KOG0054|consensus
Probab=99.46 E-value=5.5e-14 Score=151.97 Aligned_cols=175 Identities=17% Similarity=0.218 Sum_probs=110.5
Q ss_pred hhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhH---HHHHHHHhcc
Q psy9590 130 EQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSV---AKRVAEEFGC 206 (350)
Q Consensus 130 ~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~---~~~v~~~~~~ 206 (350)
+.|..+| .+.++|...|++||.+||+|.|||||||++..+..+.. +.+|+|.+. ...+.-+.. ..+++-..+.
T Consensus 1147 RYrp~lp--~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e-~~~G~I~ID-gvdI~~igL~dLRsrlsIIPQd 1222 (1381)
T KOG0054|consen 1147 RYRPNLP--LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE-PAEGEILID-GVDISKIGLHDLRSRLSIIPQD 1222 (1381)
T ss_pred EeCCCCc--chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC-ccCCeEEEc-CeecccccHHHHHhcCeeeCCC
Confidence 3455555 45788999999999999999999999999999999884 468999774 222222111 1111100000
Q ss_pred c-----------------ccchhhhhhhc------c-cCC-Ccc----ccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 207 R-----------------LGQEVGYTIRF------E-DCT-SSE----TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 207 ~-----------------~~~~v~~~~~~------~-~~~-~~~----~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
+ ..+++...++. . ..+ ..+ ..-..+|-||||.+++||||+.+.++++|||+
T Consensus 1223 PvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEA 1302 (1381)
T KOG0054|consen 1223 PVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEA 1302 (1381)
T ss_pred CceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecc
Confidence 0 00111111100 0 000 011 12237999999999999999999999999999
Q ss_pred CccccccccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeeeEeeec
Q psy9590 258 HERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNS 332 (350)
Q Consensus 258 her~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~ 332 (350)
+..||..-...... +..+-.+|+---|-..|.+. +|++.|+|.|++ ..||.
T Consensus 1303 ---------------------TAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v--~Efds 1356 (1381)
T KOG0054|consen 1303 ---------------------TASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRV--VEFDS 1356 (1381)
T ss_pred ---------------------cccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeE--eecCC
Confidence 44444332211111 11112578888899998887 699999999999 45663
No 398
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.46 E-value=7e-14 Score=124.77 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=52.1
Q ss_pred ccccccChhHHHH------HHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceecc-CCcc---ccc
Q psy9590 226 TLIKYMTDGMLLR------ECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNK-YEEP---NAW 295 (350)
Q Consensus 226 ~~i~~lS~G~~qr------~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~-~~~~---~~~ 295 (350)
..+..||+||+|| ++++++++.+|+++++||| ...+++.... .... ...
T Consensus 111 ~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP---------------------~~~LD~~~~~~~l~~~l~~~~ 169 (204)
T cd03240 111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP---------------------TTNLDEENIEESLAEIIEERK 169 (204)
T ss_pred cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC---------------------ccccCHHHHHHHHHHHHHHHH
Confidence 4567899999996 6889999999999999999 3333332222 1111 000
Q ss_pred c--eeEEEEEecccccccccCCEEEEEeC
Q psy9590 296 R--ISRVVIATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 296 ~--~~~vi~sT~iae~s~ti~d~~~vid~ 322 (350)
+ -..||++||..+.. ..+|.+++++.
T Consensus 170 ~~~~~~iiiitH~~~~~-~~~d~i~~l~~ 197 (204)
T cd03240 170 SQKNFQLIVITHDEELV-DAADHIYRVEK 197 (204)
T ss_pred hccCCEEEEEEecHHHH-hhCCEEEEEee
Confidence 1 13599999998865 67888888853
No 399
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.45 E-value=1.1e-13 Score=124.16 Aligned_cols=75 Identities=8% Similarity=-0.007 Sum_probs=52.1
Q ss_pred cccccccChhHHHHHHHHhhcCC----CCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccce
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLN----NYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRI 297 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~----~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~ 297 (350)
++++..+|+||+||+.+|++++. +|+++++||| +.++++...+.... ...+-
T Consensus 122 ~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEP---------------------t~gLD~~~~~~l~~~l~~~~~~ 180 (212)
T cd03274 122 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEI---------------------DAALDFRNVSIVANYIKERTKN 180 (212)
T ss_pred ccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCC---------------------CcCCCHHHHHHHHHHHHHHcCC
Confidence 45678999999999999999963 5799999999 33443332221111 00011
Q ss_pred eEEEEEecccccccccCCEEEEEe
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vid 321 (350)
.++|+.||.. ....++|.++++.
T Consensus 181 ~~~iivs~~~-~~~~~~d~v~~~~ 203 (212)
T cd03274 181 AQFIVISLRN-NMFELADRLVGIY 203 (212)
T ss_pred CEEEEEECcH-HHHHhCCEEEEEE
Confidence 3588888985 5668999999986
No 400
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.44 E-value=3.4e-14 Score=117.67 Aligned_cols=122 Identities=20% Similarity=0.297 Sum_probs=78.6
Q ss_pred chhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC--CCCCcEEEEcCCcchhhhhHHHHHH-HHhcc-----
Q psy9590 135 LPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG--FTARGKIGCTQPRRVAAMSVAKRVA-EEFGC----- 206 (350)
Q Consensus 135 lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~--~~~~G~i~~~~~~~i~~~~~~~~v~-~~~~~----- 206 (350)
+|-..+..++..+|.+|+++-+.||+||||||++.-+.|... ++.+|++.. +..++..++..++-. ..+..
T Consensus 12 l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l-~~~~l~~lPa~qRq~GiLFQD~lLFp 90 (213)
T COG4136 12 LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWL-NEQRLDMLPAAQRQIGILFQDALLFP 90 (213)
T ss_pred CCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEE-CCeeccccchhhhheeeeeccccccc
Confidence 344445566788999999999999999999999998888653 334677766 444555555443321 11110
Q ss_pred --cccchhhhh-----------------hhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 207 --RLGQEVGYT-----------------IRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 207 --~~~~~v~~~-----------------~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
..++++-+. +....... .......+||||+-|+++-|+|+..|+.++||||
T Consensus 91 hlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEP 161 (213)
T COG4136 91 HLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP 161 (213)
T ss_pred ccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCc
Confidence 111111111 00000111 1123457999999999999999999999999999
No 401
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.41 E-value=2.7e-13 Score=133.51 Aligned_cols=168 Identities=16% Similarity=0.135 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh------------------------
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA------------------------ 193 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~------------------------ 193 (350)
....+++.+++++||++||.|--|||+|-++..+.|..+ ..+|+|.+. .+.+..
T Consensus 272 ~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-~~~G~i~l~-G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~ 349 (500)
T COG1129 272 GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-ASSGEILLD-GKPVRIRSPRDAIKAGIAYVPEDRKSEGLV 349 (500)
T ss_pred CCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-CCCceEEEC-CEEccCCCHHHHHHcCCEeCCcccccCcCc
Confidence 334567889999999999999999999999999999663 447888663 211111
Q ss_pred --hhHHHHHHHH-hcc-----cc-----cchhhhhhhccc--CCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCC
Q psy9590 194 --MSVAKRVAEE-FGC-----RL-----GQEVGYTIRFED--CTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258 (350)
Q Consensus 194 --~~~~~~v~~~-~~~-----~~-----~~~v~~~~~~~~--~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEph 258 (350)
.++.+++.-. +.. .. ...+...++..+ ..+.+..+..||||.+||+.||+.|+.+|++||||||
T Consensus 350 l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEP- 428 (500)
T COG1129 350 LDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEP- 428 (500)
T ss_pred CCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCC-
Confidence 1222222111 000 00 001111111111 2234477889999999999999999999999999999
Q ss_pred ccccccccccChhHHHhhhhcCcccceeccCCccccc---ce-eEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 259 ERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---RI-SRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 259 er~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~-~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+.++|+--..+...-+. +- ..||+-|..+++.+.+||+++|+..|++.-.
T Consensus 429 --------------------TRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 429 --------------------TRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred --------------------CcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 88888765544322111 11 4688888888889999999999999999643
No 402
>KOG2355|consensus
Probab=99.41 E-value=2.5e-13 Score=118.02 Aligned_cols=166 Identities=20% Similarity=0.202 Sum_probs=103.1
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch-----------h-------------------
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV-----------A------------------- 192 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i-----------~------------------- 192 (350)
+|..+++.|.-..++|.|||||||+++.+.|..- -..|.|.+.....+ .
T Consensus 32 Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-v~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq 110 (291)
T KOG2355|consen 32 DFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-VGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQ 110 (291)
T ss_pred EEeeccCCCceEEEEecCCCchhhhHHHhcCccc-ccCCeEEEcCcCccccccccccCceeEeccccccccccccccccc
Confidence 5667888999999999999999999999988542 22344433211000 0
Q ss_pred -hhhHHHHHHHHhcccccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 193 -AMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 193 -~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
-++..+.+...-+... +.-...++..+. ...-+...+|+||++|+.|++.|++..++++|||. +++-|++--.
T Consensus 111 ~D~sae~mifgV~g~dp-~Rre~LI~iLDI-dl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEV---TVDLDVlARa- 184 (291)
T KOG2355|consen 111 GDISAEHMIFGVGGDDP-ERREKLIDILDI-DLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEV---TVDLDVLARA- 184 (291)
T ss_pred ccccHHHHHhhccCCCh-hHhhhhhhheec-cceEEEeeccccchhhhHHHHhcccceeEEEeeee---EeehHHHHHH-
Confidence 0111111111111100 111122222222 12345567999999999999999999999999998 5555554211
Q ss_pred HHHhhhhcCcccceeccCCcccccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 272 KLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
.+.+|+. ++-+..- .+||.||||.+-..+-|...+-|.+|+...
T Consensus 185 dLLeFlk---------eEce~Rg---atIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 185 DLLEFLK---------EECEQRG---ATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHHHH---------HHHhhcC---cEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 2223331 1111111 469999999999999999999999999864
No 403
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.40 E-value=6.5e-13 Score=117.96 Aligned_cols=79 Identities=11% Similarity=-0.064 Sum_probs=55.2
Q ss_pred cccccccChhHHHHHHHHhhc----CCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---ccc--
Q psy9590 225 ETLIKYMTDGMLLRECLVDLD----LNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAW-- 295 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~al----l~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~-- 295 (350)
++++..||+||+||+.||+++ +.+|+++|+||| ...++......... ..+
T Consensus 104 ~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP---------------------~~glD~~~~~~~~~~l~~~~~~ 162 (198)
T cd03276 104 VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF---------------------DVFMDMVNRKISTDLLVKEAKK 162 (198)
T ss_pred CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCc---------------------ccccCHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999 699999999999 22222211110000 000
Q ss_pred --ceeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 296 --RISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 296 --~~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
+-..|+++||..+....+ |.+.|+-.|+.
T Consensus 163 ~~~~~~iii~th~~~~i~~~-d~v~~~~~~~~ 193 (198)
T cd03276 163 QPGRQFIFITPQDISGLASS-DDVKVFRMKDP 193 (198)
T ss_pred CCCcEEEEEECCcccccccc-cceeEEEecCC
Confidence 013589999999999887 78888766544
No 404
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.37 E-value=1.6e-12 Score=119.38 Aligned_cols=74 Identities=12% Similarity=0.018 Sum_probs=51.4
Q ss_pred ccccccChhHHHHHHHHhhcCCC----CcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc-e
Q psy9590 226 TLIKYMTDGMLLRECLVDLDLNN----YSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-I 297 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all~~----~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~ 297 (350)
+.+..||+||+||++||++++.+ |+++|+||| +..++......... ..++ -
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEP---------------------t~~LD~~~~~~l~~~i~~~~~~g 209 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEV---------------------DAALDNTNVGKVASYIREQAGPN 209 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecc---------------------cccCCHHHHHHHHHHHHHhccCC
Confidence 56789999999999999999864 899999999 22333221111100 0000 1
Q ss_pred eEEEEEecccccccccCCEEEEEe
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vid 321 (350)
..||++||..+. +..+|.++++.
T Consensus 210 ~~vi~isH~~~~-~~~~d~i~~~~ 232 (247)
T cd03275 210 FQFIVISLKEEF-FSKADALVGVY 232 (247)
T ss_pred cEEEEEECCHHH-HhhCCeEEEEE
Confidence 359999999665 58899998885
No 405
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.36 E-value=3.5e-13 Score=124.05 Aligned_cols=74 Identities=9% Similarity=0.088 Sum_probs=50.2
Q ss_pred ccccccChhHHHHHHHHhhcC----CCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc---cccee
Q psy9590 226 TLIKYMTDGMLLRECLVDLDL----NNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWRIS 298 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all----~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~ 298 (350)
..+..||+||+||+++|++++ .+|+++++||| +..++.......... .++-.
T Consensus 162 ~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEP---------------------t~~ld~~~~~~~~~~l~~~~~g~ 220 (251)
T cd03273 162 ESLTELSGGQRSLVALSLILALLLFKPAPMYILDEV---------------------DAALDLSHTQNIGRMIKTHFKGS 220 (251)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCC---------------------CcCCCHHHHHHHHHHHHHHcCCC
Confidence 567789999999999999986 68899999999 333332222111110 00113
Q ss_pred EEEEEecccccccccCCEEEEEe
Q psy9590 299 RVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 299 ~vi~sT~iae~s~ti~d~~~vid 321 (350)
.||+.||..| .+..+|.++-|.
T Consensus 221 ~ii~iSH~~~-~~~~~d~v~~~~ 242 (251)
T cd03273 221 QFIVVSLKEG-MFNNANVLFRTR 242 (251)
T ss_pred EEEEEECCHH-HHHhCCEEEEEE
Confidence 5999999955 556788887664
No 406
>KOG0062|consensus
Probab=99.36 E-value=4.5e-13 Score=130.11 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=66.2
Q ss_pred HHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc--CCCCCcEE-EEcCCc----chhhhhHHHHHHHHhccccc---chhhh
Q psy9590 145 IKAVSDNQILIVIGETGSGKTTQITQYLAEA--GFTARGKI-GCTQPR----RVAAMSVAKRVAEEFGCRLG---QEVGY 214 (350)
Q Consensus 145 ~~~i~~g~v~~liG~nGsGKSTll~~l~~~~--~~~~~G~i-~~~~~~----~i~~~~~~~~v~~~~~~~~~---~~v~~ 214 (350)
...+..|.-+||+|+||+|||||++++..-. .++..-.+ .+.-+. ..+-.....+++.+.....+ +.+..
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~ 179 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYD 179 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHH
Confidence 3356779999999999999999999988711 12211111 111000 01111222333333211111 11111
Q ss_pred -hhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 215 -TIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 215 -~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
.+.-.+..+ ....++.+|||.|+|++||||+..+|++|+||||
T Consensus 180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP 225 (582)
T KOG0062|consen 180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP 225 (582)
T ss_pred HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC
Confidence 111122222 2366789999999999999999999999999999
No 407
>KOG0927|consensus
Probab=99.35 E-value=3.8e-13 Score=131.24 Aligned_cols=172 Identities=17% Similarity=0.184 Sum_probs=96.5
Q ss_pred ccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE---c---CCcchhhh--------hHHH
Q psy9590 133 QSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC---T---QPRRVAAM--------SVAK 198 (350)
Q Consensus 133 ~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~---~---~~~~i~~~--------~~~~ 198 (350)
.+.+-..+.++....+..|+-+||+|+|||||||+++++.+... |..-++.+ + .|+...++ ....
T Consensus 83 ~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~-P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~ 161 (614)
T KOG0927|consen 83 LSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV-PIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERK 161 (614)
T ss_pred eccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC-CCCcccchhhhcccCCCchHHHHHHHhhhhHHHHH
Confidence 34444445666677899999999999999999999999998663 22222211 1 11111111 0011
Q ss_pred HH---HHHhcc--c--ccc-------------------hhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCc
Q psy9590 199 RV---AEEFGC--R--LGQ-------------------EVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYS 250 (350)
Q Consensus 199 ~v---~~~~~~--~--~~~-------------------~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~ 250 (350)
++ ++.+.. . ..+ .+...+.-....+ ..+.++.||||+++|++||++|+.+|+
T Consensus 162 rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~ 241 (614)
T KOG0927|consen 162 RLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPD 241 (614)
T ss_pred HHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCC
Confidence 11 111100 0 000 0000000111111 235677999999999999999999999
Q ss_pred EEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccccee-EEEEEecccccccccCCEEEEEeCCee
Q psy9590 251 VIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRIS-RVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 251 viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~-~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
+|+||||-.+ -|+= +..-+.+|...|- + .+|+..|.-++.=.+|..++=++.++.
T Consensus 242 LLLLDEPtnh---LDle-A~~wLee~L~k~d----------------~~~lVi~sh~QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 242 LLLLDEPTNH---LDLE-AIVWLEEYLAKYD----------------RIILVIVSHSQDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred EEEecCCccC---CCHH-HHHHHHHHHHhcc----------------CceEEEEecchhhhhhHhhhhheecccce
Confidence 9999999211 1110 0001122222111 2 478888888877777777777777663
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.34 E-value=1.3e-12 Score=125.29 Aligned_cols=154 Identities=16% Similarity=0.234 Sum_probs=92.2
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcE---EEEc-CCcchhh---hhHHHHHHHHhccc-----ccchhhh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGK---IGCT-QPRRVAA---MSVAKRVAEEFGCR-----LGQEVGY 214 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~---i~~~-~~~~i~~---~~~~~~v~~~~~~~-----~~~~v~~ 214 (350)
.+..||+++++||||-||||+++.+.|...++ +|. +.++ .|+.+.. .++.+.+....... +..++-.
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd-eg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~ 441 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD-EGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVK 441 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCC-CCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcC
Confidence 45678999999999999999999999998654 442 2111 3433332 12223332221111 1111111
Q ss_pred hhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhh---cCcccceeccCCc
Q psy9590 215 TIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKK---NQRLEPLYNKYEE 291 (350)
Q Consensus 215 ~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~---~~~v~~~~~~~~~ 291 (350)
.+.+... .++.+..||||++||++||.+|..+.++++|||| +.|.. ..-+....++...
T Consensus 442 pl~l~~i--~e~~v~~LSGGELQRvaIaa~L~reADlYllDEP----------------SA~LDvEqR~~vakvIRR~~e 503 (591)
T COG1245 442 PLNLEDL--LERPVDELSGGELQRVAIAAALSREADLYLLDEP----------------SAYLDVEQRIIVAKVIRRFIE 503 (591)
T ss_pred ccchHHH--HhcccccCCchhHHHHHHHHHhccccCEEEecCc----------------hhhccHHHHHHHHHHHHHHHh
Confidence 1222211 2466778999999999999999999999999999 22221 0000000111010
Q ss_pred ccccceeEEEEEecccccccccCCEEEEEeC
Q psy9590 292 PNAWRISRVVIATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 292 ~~~~~~~~vi~sT~iae~s~ti~d~~~vid~ 322 (350)
.+ -.+.++..|+.=..--+.|...|...
T Consensus 504 ~~---~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 504 NN---EKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred hc---CceEEEEecceehhhhhhceEEEEec
Confidence 00 14578888988877778888888864
No 409
>KOG0062|consensus
Probab=99.33 E-value=1.8e-12 Score=125.98 Aligned_cols=167 Identities=20% Similarity=0.265 Sum_probs=112.0
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHH------------HHHHHHhcc
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVA------------KRVAEEFGC 206 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~------------~~v~~~~~~ 206 (350)
+++.+....++...-++++|+||+||||+++.+.+... +..|.+......++.+.... ..+...+.-
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG 456 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-PTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPG 456 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC-cccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCC
Confidence 56666667777777899999999999999999998763 44777666444555544322 111111111
Q ss_pred cccchhhhhhhcccCCCc--cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH-HHhhhhcCccc
Q psy9590 207 RLGQEVGYTIRFEDCTSS--ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK-LSKFKKNQRLE 283 (350)
Q Consensus 207 ~~~~~v~~~~~~~~~~~~--~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~-~~~~~~~~~v~ 283 (350)
...+.+..++..++.... ...+..|||||+-|+++|.....+|.+||||||-.+ |+.|-+=++.+ +..|-
T Consensus 457 ~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNh-LD~dsl~AL~~Al~~F~------ 529 (582)
T KOG0062|consen 457 KTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNH-LDRDSLGALAKALKNFN------ 529 (582)
T ss_pred CCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcc-ccHHHHHHHHHHHHhcC------
Confidence 122233333333333322 244788999999999999999999999999999332 33333322221 11111
Q ss_pred ceeccCCcccccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 284 PLYNKYEEPNAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 284 ~~~~~~~~~~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
-.||+.||+.|..-.+|+-.+|+++|++..
T Consensus 530 --------------GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 530 --------------GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred --------------CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 249999999999999999999999999964
No 410
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.30 E-value=2.7e-13 Score=115.05 Aligned_cols=159 Identities=15% Similarity=0.169 Sum_probs=99.1
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhh---hHHH---HHHHHhccc----------
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAM---SVAK---RVAEEFGCR---------- 207 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~---~~~~---~v~~~~~~~---------- 207 (350)
+...+..|+++=++|||||||||++-.+.|.. +.+|.|.+.. ..+..- ..++ ++++.-...
T Consensus 18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~--~~sGsi~~~G-~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~ 94 (248)
T COG4138 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGSGSIQFAG-QPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLT 94 (248)
T ss_pred cccccccceEEEEECCCCccHHHHHHHHhCCC--CCCceEEECC-cchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhh
Confidence 44567889999999999999999999999987 3478887742 111111 1111 111111100
Q ss_pred -------ccchhhhhhhcccCCCc-cccccccChhHHHHHHHHhhcC-------CCCcEEEEcCCCccccccccccChhH
Q psy9590 208 -------LGQEVGYTIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDL-------NNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 208 -------~~~~v~~~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all-------~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
....+.+..+..+..++ .+.+.+||||+-||+-+|...+ ...+++++|||
T Consensus 95 L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP--------------- 159 (248)
T COG4138 95 LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP--------------- 159 (248)
T ss_pred hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCC---------------
Confidence 00112222222222222 2667899999999998886543 23478999999
Q ss_pred HHhhhhcCcccceec---cCCcccccce-eEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 273 LSKFKKNQRLEPLYN---KYEEPNAWRI-SRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~---~~~~~~~~~~-~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
..++++.-. .......|+. +.||+|.|+..--+.-+|.++.+.-|+..
T Consensus 160 ------~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~ 211 (248)
T COG4138 160 ------MNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLL 211 (248)
T ss_pred ------CcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEE
Confidence 334433211 1112234544 78999999999998888888887777664
No 411
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.29 E-value=2.6e-12 Score=114.25 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=80.2
Q ss_pred HHHhhcC-CEEEEeCCCCCCHHHHHHHHHhhcCCCCCc-EEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCC
Q psy9590 145 IKAVSDN-QILIVIGETGSGKTTQITQYLAEAGFTARG-KIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCT 222 (350)
Q Consensus 145 ~~~i~~g-~v~~liG~nGsGKSTll~~l~~~~~~~~~G-~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~ 222 (350)
..++.+| ++++|+|||||||||+++++....-....| .+.+.....+.+ -+++.. .+....
T Consensus 21 ~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~---------------~~~~~~--~lg~~~ 83 (200)
T cd03280 21 DIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPV---------------FENIFA--DIGDEQ 83 (200)
T ss_pred eEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcC---------------ccEEEE--ecCchh
Confidence 3456777 489999999999999999877211011011 111100000000 000000 011111
Q ss_pred CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCC----cccccc-e
Q psy9590 223 SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYE----EPNAWR-I 297 (350)
Q Consensus 223 ~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~----~~~~~~-~ 297 (350)
.....+..+|+||+|+..++++ +.+|+++++||| ...+++...... .....+ -
T Consensus 84 ~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp---------------------~~glD~~~~~~i~~~~l~~l~~~~ 141 (200)
T cd03280 84 SIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDEL---------------------GSGTDPVEGAALAIAILEELLERG 141 (200)
T ss_pred hhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCC---------------------CCCCCHHHHHHHHHHHHHHHHhcC
Confidence 2234456799999999999977 489999999999 111111110000 000000 1
Q ss_pred eEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
.++|++||..+ ...++|.+.+++.|.+.
T Consensus 142 ~~vi~~tH~~~-l~~~~d~~~~l~~g~l~ 169 (200)
T cd03280 142 ALVIATTHYGE-LKAYAYKREGVENASME 169 (200)
T ss_pred CEEEEECCHHH-HHHHHhcCCCeEEEEEE
Confidence 35999999855 55889999999988774
No 412
>KOG0061|consensus
Probab=99.28 E-value=1.4e-12 Score=133.88 Aligned_cols=167 Identities=19% Similarity=0.191 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC--CCCcEEEEcC-Cc-----------------chhhhhHH
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF--TARGKIGCTQ-PR-----------------RVAAMSVA 197 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~--~~~G~i~~~~-~~-----------------~i~~~~~~ 197 (350)
.++.+++.-.+++|++.+|+||+||||||+++.+.|.... ..+|.|.+.. ++ -+..+++.
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHH
Confidence 4456677888999999999999999999999999997753 3578887753 11 12223333
Q ss_pred HHHHHHhccc---------ccchhhhhhhcccCCC-ccccc-----cccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 198 KRVAEEFGCR---------LGQEVGYTIRFEDCTS-SETLI-----KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 198 ~~v~~~~~~~---------~~~~v~~~~~~~~~~~-~~~~i-----~~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
+.+....... ..+.|...+...+... .++.+ +.+|||||+|+++|.-++++|.++++|||
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEP----- 197 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEP----- 197 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCC-----
Confidence 4332221111 1122333333222221 23444 46999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCccccc----ceeEEEEEeccccccc-ccCCEEEEEeCCee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSL-TIDGIFYVVDPGFV 325 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~-ti~d~~~vid~G~~ 325 (350)
+.++|............ +-|+||++=|.....+ .+=|.++++..|.+
T Consensus 198 ----------------TSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~ 249 (613)
T KOG0061|consen 198 ----------------TSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEV 249 (613)
T ss_pred ----------------CCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcE
Confidence 55555443322211100 1156777777665433 34566777776743
No 413
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.27 E-value=3e-12 Score=128.57 Aligned_cols=114 Identities=21% Similarity=0.225 Sum_probs=72.3
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc---------CCcchhhhhHHHHHHHHhccc-cc-
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT---------QPRRVAAMSVAKRVAEEFGCR-LG- 209 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~---------~~~~i~~~~~~~~v~~~~~~~-~~- 209 (350)
.+++...+++|+-+.|.|+|||||||+++.+.|+-++. +|+|.+- |...+..-+..+.++...... ..
T Consensus 409 l~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g-~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d 487 (604)
T COG4178 409 LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG-SGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSD 487 (604)
T ss_pred eccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC-CCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCCh
Confidence 44456678899999999999999999999999987554 5666442 111222223334343322211 10
Q ss_pred c-------hh--hhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 210 Q-------EV--GYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 210 ~-------~v--~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
+ .+ ++.....+..... -..||+|+|||+++||.++++|++++|||+
T Consensus 488 ~~l~~vL~~vgL~~L~~rl~~~~~W--~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 488 AELVAVLHKVGLGDLAERLDEEDRW--DRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred HHHHHHHHHcCcHHHHHHHhccCcH--hhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 0 11 1111111111111 125999999999999999999999999999
No 414
>KOG0066|consensus
Probab=99.24 E-value=1.6e-11 Score=117.30 Aligned_cols=157 Identities=16% Similarity=0.197 Sum_probs=90.8
Q ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh------------hhHHHHHHHHhcccccchhh
Q psy9590 146 KAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA------------MSVAKRVAEEFGCRLGQEVG 213 (350)
Q Consensus 146 ~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~------------~~~~~~v~~~~~~~~~~~v~ 213 (350)
+-|.-..-++|+||||.||||+++.++|...+ ..|...-...-++.. .+..+++...++.++.+ ..
T Consensus 608 FGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P-~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~-AR 685 (807)
T KOG0066|consen 608 FGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP-NDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQE-AR 685 (807)
T ss_pred ccccccceeEEECCCCccHHHHHHHHhcCCCC-CcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHH-HH
Confidence 34444567999999999999999999998744 355332111111111 12223444444443321 11
Q ss_pred hhhhcccCCCc--cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCc
Q psy9590 214 YTIRFEDCTSS--ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEE 291 (350)
Q Consensus 214 ~~~~~~~~~~~--~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~ 291 (350)
..+..++..++ .-.++.|||||+-|+++|.-.+..|++|||||| +..+++-..+...
T Consensus 686 K~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP---------------------TNNLDIESIDALa 744 (807)
T KOG0066|consen 686 KQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP---------------------TNNLDIESIDALA 744 (807)
T ss_pred HHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC---------------------CCCcchhhHHHHH
Confidence 11111222222 256889999999999999999999999999999 3333332222111
Q ss_pred ccccce-eEEEEEecccccccccCCEEEEEeCCee
Q psy9590 292 PNAWRI-SRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 292 ~~~~~~-~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
..+... -.||+.||+..-...-.=-.|||..--+
T Consensus 745 EAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 745 EAINEYNGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred HHHHhccCcEEEEecccceeeecCceEEEEccCCh
Confidence 100000 3489999987665544445566654433
No 415
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.24 E-value=1.3e-11 Score=118.63 Aligned_cols=152 Identities=13% Similarity=0.151 Sum_probs=88.5
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------cchhhhhHHHH--------------------H
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------RRVAAMSVAKR--------------------V 200 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------~~i~~~~~~~~--------------------v 200 (350)
..++|++++|+|+||-||||.++.+.|...+ .=|+-.- .| +++..-....+ +
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~P-NLG~~~~-pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKP-NLGRYED-PPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCcccc-CCCCCCC-CCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 5678999999999999999999999998742 2222111 01 00000000000 0
Q ss_pred HHHhccccc---------chhhhhhhcccCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccCh
Q psy9590 201 AEEFGCRLG---------QEVGYTIRFEDCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDP 270 (350)
Q Consensus 201 ~~~~~~~~~---------~~v~~~~~~~~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~ 270 (350)
.....-..+ ....+.+...+.. -.++.+..||||++||++||.+++.+.+++++|||
T Consensus 174 Pk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEp------------- 240 (591)
T COG1245 174 PKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP------------- 240 (591)
T ss_pred HHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCC-------------
Confidence 000000000 0111111112221 23467889999999999999999999999999999
Q ss_pred hHHHhhhhcCcccceeccCCc---ccccc-eeEEEEEecccccccccCCEEEEEe
Q psy9590 271 TKLSKFKKNQRLEPLYNKYEE---PNAWR-ISRVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 271 l~~~~~~~~~~v~~~~~~~~~---~~~~~-~~~vi~sT~iae~s~ti~d~~~vid 321 (350)
+.|. ++.-+-... ..+++ -+.|++..|++-..--++|.++|+-
T Consensus 241 ---sSyL-----Di~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 241 ---SSYL-----DIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred ---cccc-----cHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 1121 211110000 00111 1469999999988888899999885
No 416
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.23 E-value=1e-11 Score=108.36 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=49.3
Q ss_pred ccccccChhHHHHHHHHhhcC----CCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc-e
Q psy9590 226 TLIKYMTDGMLLRECLVDLDL----NNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-I 297 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all----~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~ 297 (350)
+.+ +|+||+||+.++++++ .+|+++|+||| ...++......... ...+ -
T Consensus 92 ~~~--LS~Ge~~r~~Laral~~~~~~~p~llilDEp---------------------~~~LD~~~~~~i~~~L~~~~~~g 148 (178)
T cd03239 92 EQI--LSGGEKSLSALALIFALQEIKPSPFYVLDEI---------------------DAALDPTNRRRVSDMIKEMAKHT 148 (178)
T ss_pred ccc--CCHHHHHHHHHHHHHHHhcCCCCCEEEEECC---------------------CCCCCHHHHHHHHHHHHHHHhCC
Confidence 444 9999999999999985 79999999999 22222221111100 0000 0
Q ss_pred eEEEEEecccccccccCCEEEEEeC
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vid~ 322 (350)
..+|++||..+.. ..+|.+++|-.
T Consensus 149 ~tiIiiSH~~~~~-~~adrvi~i~~ 172 (178)
T cd03239 149 SQFIVITLKKEMF-ENADKLIGVLF 172 (178)
T ss_pred CEEEEEECCHHHH-hhCCeEEEEEE
Confidence 3599999998865 67999988863
No 417
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.22 E-value=4.4e-11 Score=107.44 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=50.7
Q ss_pred ccccccChhHHHHHHHHh----hcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc---c-cc-
Q psy9590 226 TLIKYMTDGMLLRECLVD----LDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---A-WR- 296 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~----all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~-~~- 296 (350)
..+..||+||+|++.++. +++.+|+++|+||| ...+++......... . .+
T Consensus 122 ~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP---------------------~~~LD~~~~~~i~~~l~~~~~~~ 180 (213)
T cd03277 122 LDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEI---------------------NQGMDPTNERKVFDMLVETACKE 180 (213)
T ss_pred cchhhccccHHHHHHHHHHHHHHhccCCCEEEEecc---------------------cccCCHHHHHHHHHHHHHHhhcC
Confidence 456789999999987664 44689999999999 222222221111110 0 00
Q ss_pred -eeEEEEEecccccccccCC--EEEEEeCCe
Q psy9590 297 -ISRVVIATNIAETSLTIDG--IFYVVDPGF 324 (350)
Q Consensus 297 -~~~vi~sT~iae~s~ti~d--~~~vid~G~ 324 (350)
..+||+.||..+..+..+| .++||..|+
T Consensus 181 g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 181 GTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 1248999988877777765 777887775
No 418
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.20 E-value=1.3e-11 Score=106.00 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=72.7
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcccccc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIK 229 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i~ 229 (350)
++.+.+|+|||||||||+++.+....... .+........ ..++... .+.. .+ -....
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~-~~~~~~~~~~-------------~~g~~~~-~~~~--~~------i~~~~ 76 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGA-QSATRRRSGV-------------KAGCIVA-AVSA--EL------IFTRL 76 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-chhhhccCcc-------------cCCCcce-eeEE--EE------ehhee
Confidence 34599999999999999999876654222 2221110000 0000000 0000 00 00112
Q ss_pred ccChhHHHHHHHHhhcCC----CCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccc----cceeEEE
Q psy9590 230 YMTDGMLLRECLVDLDLN----NYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA----WRISRVV 301 (350)
Q Consensus 230 ~lS~G~~qr~~ia~all~----~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~----~~~~~vi 301 (350)
.+|+||++++.+++++.. +|+++++||| ...+++.......... .+-..+|
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp---------------------~~gld~~~~~~l~~~l~~~~~~~~~vi 135 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEI---------------------DRGLDPRDGQALAEAILEHLVKGAQVI 135 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCC---------------------CCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 399999999999999975 7899999999 1122211111000000 0002599
Q ss_pred EEecccccccccCCEEEEEeC
Q psy9590 302 IATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 302 ~sT~iae~s~ti~d~~~vid~ 322 (350)
++||..|... .+|..+.++.
T Consensus 136 i~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 136 VITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred EEcCCHHHHH-hhhhEEEEEE
Confidence 9999999764 5788888763
No 419
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.16 E-value=5.9e-11 Score=107.27 Aligned_cols=147 Identities=16% Similarity=0.093 Sum_probs=84.7
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCC
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTS 223 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~ 223 (350)
+.....++++++|.||||+||||+++++....-...-| +.-|-.-+..+ .+...+...+.
T Consensus 23 ~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g---~~vpa~~~~~~---------------~~~~il~~~~l-- 82 (222)
T cd03285 23 VTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG---CFVPCDSADIP---------------IVDCILARVGA-- 82 (222)
T ss_pred EEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhC---CCcCcccEEEe---------------ccceeEeeecc--
Confidence 34445578999999999999999999866421000011 00010000000 00111111111
Q ss_pred ccccccccChhHHHHHHHHhhc--CCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCc-ccc--ccee
Q psy9590 224 SETLIKYMTDGMLLRECLVDLD--LNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEE-PNA--WRIS 298 (350)
Q Consensus 224 ~~~~i~~lS~G~~qr~~ia~al--l~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~-~~~--~~~~ 298 (350)
.+.....+|.|++++..+++++ +.+|+++||||| +.|+.+++........ ... ..-.
T Consensus 83 ~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp------------------~~gT~~lD~~~~~~~il~~l~~~~~~ 144 (222)
T cd03285 83 SDSQLKGVSTFMAEMLETAAILKSATENSLIIIDEL------------------GRGTSTYDGFGLAWAIAEYIATQIKC 144 (222)
T ss_pred ccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecC------------------cCCCChHHHHHHHHHHHHHHHhcCCC
Confidence 1223567999999999999999 899999999999 2222222222111000 000 0013
Q ss_pred EEEEEecccccccccCCEEEEEeCCeeeeEe
Q psy9590 299 RVVIATNIAETSLTIDGIFYVVDPGFVKQKV 329 (350)
Q Consensus 299 ~vi~sT~iae~s~ti~d~~~vid~G~~~~~~ 329 (350)
++|++||. .....++|.+..++.|+.....
T Consensus 145 ~vlisTH~-~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 145 FCLFATHF-HELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred eEEEEech-HHHHHHhhcCCCeEEEEEEEEE
Confidence 58999996 5567899999999999885433
No 420
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.15 E-value=5.5e-11 Score=112.53 Aligned_cols=169 Identities=15% Similarity=0.100 Sum_probs=101.3
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHH------HHH-------HHHhccc
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVA------KRV-------AEEFGCR 207 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~------~~v-------~~~~~~~ 207 (350)
..-|...|++||++-++|.|||||||+++.+.|++. |.+|.|.+. ...+...+.. .-+ -+..+.+
T Consensus 339 vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~-PqsG~I~ld-g~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e 416 (546)
T COG4615 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLD-GKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE 416 (546)
T ss_pred ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC-CCCCceeEC-CccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence 345777899999999999999999999999999995 558888774 3223222221 111 1111111
Q ss_pred ---ccchhhhhhhc---ccCCC---ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhh
Q psy9590 208 ---LGQEVGYTIRF---EDCTS---SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKK 278 (350)
Q Consensus 208 ---~~~~v~~~~~~---~~~~~---~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~ 278 (350)
..+.+...+.. ..+.+ .+-....||.|||+|+++..|++.+-+++++||= --+.|- .|.++|.
T Consensus 417 ~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW---AADQDP-----aFRR~FY 488 (546)
T COG4615 417 GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW---AADQDP-----AFRREFY 488 (546)
T ss_pred cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh---hccCCh-----HHHHHHH
Confidence 01122222211 11111 1112336999999999999999999999999994 000000 2333332
Q ss_pred cCcccceeccCCcccccce-eEEEEEecccccccccCCEEEEEeCCeeeeEe
Q psy9590 279 NQRLEPLYNKYEEPNAWRI-SRVVIATNIAETSLTIDGIFYVVDPGFVKQKV 329 (350)
Q Consensus 279 ~~~v~~~~~~~~~~~~~~~-~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~ 329 (350)
+.-+. .+... ++|+.-||+- -.+..+|+.+-+..|++.+..
T Consensus 489 ~~lLp---------~LK~qGKTI~aIsHDd-~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 489 QVLLP---------LLKEQGKTIFAISHDD-HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHhH---------HHHHhCCeEEEEecCc-hhhhhHHHHHHHhcCceeecc
Confidence 11000 00011 5688888874 456778888888899886543
No 421
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.15 E-value=7.2e-11 Score=125.76 Aligned_cols=80 Identities=13% Similarity=-0.005 Sum_probs=57.1
Q ss_pred cccccccChhHHHHHHHHhhcCCCC---cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc-e
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLNNY---SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-I 297 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~~~---~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~ 297 (350)
+..+..||+||+||+.||++|+.+| +++||||| ...++......... ...+ -
T Consensus 825 ~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEP---------------------tsGLD~~~~~~L~~~L~~l~~~G 883 (943)
T PRK00349 825 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEP---------------------TTGLHFEDIRKLLEVLHRLVDKG 883 (943)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECC---------------------CCCCCHHHHHHHHHHHHHHHhCC
Confidence 4567799999999999999999999 99999999 22222221111100 0000 0
Q ss_pred eEEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
.+||++||+.+.. ..+|.++++ +.|.+.
T Consensus 884 ~TVIiitH~~~~i-~~aD~ii~Lgp~~G~~~G~Iv 917 (943)
T PRK00349 884 NTVVVIEHNLDVI-KTADWIIDLGPEGGDGGGEIV 917 (943)
T ss_pred CEEEEEecCHHHH-HhCCEEEEecCCcCCCCCEEE
Confidence 3699999999886 679999999 677764
No 422
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=4e-11 Score=127.44 Aligned_cols=80 Identities=14% Similarity=0.001 Sum_probs=56.6
Q ss_pred cccccccChhHHHHHHHHhhcCC---CCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc-e
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLN---NYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-I 297 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~---~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~ 297 (350)
++.+..||+||+||+.||++|+. +|+++||||| +..+++........ .... -
T Consensus 823 ~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEP---------------------tsgLD~~~~~~L~~~L~~l~~~G 881 (924)
T TIGR00630 823 GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEP---------------------TTGLHFDDIKKLLEVLQRLVDQG 881 (924)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECC---------------------CCCCCHHHHHHHHHHHHHHHhCC
Confidence 35677999999999999999997 5999999999 22222222111110 0000 1
Q ss_pred eEEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
.+||++||+.+.. ..+|.++++ +.|++.
T Consensus 882 ~TVIvi~H~~~~i-~~aD~ii~Lgp~~G~~gG~iv 915 (924)
T TIGR00630 882 NTVVVIEHNLDVI-KTADYIIDLGPEGGDGGGTIV 915 (924)
T ss_pred CEEEEEeCCHHHH-HhCCEEEEecCCccCCCCEEE
Confidence 4699999999976 579999999 677764
No 423
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.12 E-value=9.8e-11 Score=130.26 Aligned_cols=75 Identities=16% Similarity=0.051 Sum_probs=54.6
Q ss_pred cccccccChhHHHHHHHHhhcC---CCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc-e
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDL---NNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-I 297 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all---~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~ 297 (350)
+..+..||+||+||+.||++|+ .+|+++||||| +..++......... ...+ -
T Consensus 804 ~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEP---------------------TsGLD~~~~~~Ll~lL~~L~~~G 862 (1809)
T PRK00635 804 GRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEP---------------------TTGLHTHDIKALIYVLQSLTHQG 862 (1809)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCC---------------------CCCCCHHHHHHHHHHHHHHHhcC
Confidence 4567789999999999999997 69999999999 33333222211111 0000 0
Q ss_pred eEEEEEecccccccccCCEEEEEe
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vid 321 (350)
.+||++||..+.. .++|.+++++
T Consensus 863 ~TVIiIsHdl~~i-~~aDrVi~L~ 885 (1809)
T PRK00635 863 HTVVIIEHNMHVV-KVADYVLELG 885 (1809)
T ss_pred CEEEEEeCCHHHH-HhCCEEEEEc
Confidence 3599999999987 8999999995
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.07 E-value=4.6e-11 Score=106.34 Aligned_cols=139 Identities=12% Similarity=0.023 Sum_probs=75.1
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcccc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETL 227 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~ 227 (350)
+..|++++|+|+|||||||+++++.+..-....|.........+.. .+.+-..+. ........
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~---------------~dqi~~~~~--~~d~i~~~ 88 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPL---------------VDRIFTRIG--AEDSISDG 88 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCC---------------cCEEEEEec--CcccccCC
Confidence 4568999999999999999999998533111122111100001110 001111111 11112233
Q ss_pred ccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCC----ccccc-ceeEEEE
Q psy9590 228 IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYE----EPNAW-RISRVVI 302 (350)
Q Consensus 228 i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~----~~~~~-~~~~vi~ 302 (350)
+..++.+++| +..+..++.+|+++|+||| ...+++...... ..... .-..+|+
T Consensus 89 ~s~~~~e~~~-l~~i~~~~~~~~llllDEp---------------------~~gld~~~~~~l~~~ll~~l~~~~~~vi~ 146 (202)
T cd03243 89 RSTFMAELLE-LKEILSLATPRSLVLIDEL---------------------GRGTSTAEGLAIAYAVLEHLLEKGCRTLF 146 (202)
T ss_pred ceeHHHHHHH-HHHHHHhccCCeEEEEecC---------------------CCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 4556777776 5555677889999999999 111111111000 00000 0135899
Q ss_pred EecccccccccCCEEEEEeCCeee
Q psy9590 303 ATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 303 sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+||+.|... .++.+..++.|.+.
T Consensus 147 ~tH~~~~~~-~~~~~~~l~~~~~~ 169 (202)
T cd03243 147 ATHFHELAD-LPEQVPGVKNLHME 169 (202)
T ss_pred ECChHHHHH-HhhcCCCeEEEEEE
Confidence 999988764 56677777777664
No 425
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=3.8e-10 Score=105.33 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=51.1
Q ss_pred ccccChhHHHHHHHHhhcCC----CCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccceeEE
Q psy9590 228 IKYMTDGMLLRECLVDLDLN----NYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRV 300 (350)
Q Consensus 228 i~~lS~G~~qr~~ia~all~----~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~v 300 (350)
...||+||+||+++|++++. +|+++|+||| ...+++........ ..++-.++
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp---------------------~~~Ld~~~~~~l~~~l~~~~~~~ti 226 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEI---------------------DTGISGEVAQAVGKKLKELSRSHQV 226 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECC---------------------ccCCCHHHHHHHHHHHHHHhCCCEE
Confidence 34699999999999986543 9999999999 22222221111100 00011359
Q ss_pred EEEecccccccccCCEEEEEeCCee
Q psy9590 301 VIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 301 i~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
|++||..+. ...+|.+++++.|..
T Consensus 227 i~isH~~~~-~~~~d~~~~l~~~~~ 250 (276)
T cd03241 227 LCITHLPQV-AAMADNHFLVEKEVE 250 (276)
T ss_pred EEEechHHH-HHhcCcEEEEEEecC
Confidence 999999985 579999999988743
No 426
>KOG0064|consensus
Probab=99.03 E-value=4.7e-11 Score=116.43 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=73.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHH-----------------H
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVA-----------------E 202 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~-----------------~ 202 (350)
+..++...+++|--+.|+||||||||++.+.+.|+-+ -.+|....-.|.++.++++.-++. .
T Consensus 497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-vy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~ 575 (728)
T KOG0064|consen 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-VYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMK 575 (728)
T ss_pred eecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-ccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHH
Confidence 3456777889999999999999999999999888753 357766654444555554432221 0
Q ss_pred Hhccccc--chh------hhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 203 EFGCRLG--QEV------GYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 203 ~~~~~~~--~~v------~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
..|.... ..+ .+.......-+ ...=-..||||++||+.+||.+-++|++.+|||.
T Consensus 576 ~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEc 639 (728)
T KOG0064|consen 576 RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDEC 639 (728)
T ss_pred hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhh
Confidence 0010000 000 01111110000 0011126999999999999999999999999998
No 427
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.00 E-value=6.7e-10 Score=105.84 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=101.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC-------CCCCcEEEEcCCcchhh------------hhHHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG-------FTARGKIGCTQPRRVAA------------MSVAKRV 200 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~-------~~~~G~i~~~~~~~i~~------------~~~~~~v 200 (350)
..+++...+++|++++++|.+|+||||++++++|... .+++|.+.+.... +++ .++.+.+
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-~~a~iPge~Ep~f~~~tilehl 476 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-VSALIPGEYEPEFGEVTILEHL 476 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-hhhccCcccccccCchhHHHHH
Confidence 3457888999999999999999999999999999642 2457777552111 211 1122222
Q ss_pred HHHhcccccchhhhh--hhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh---HHHh
Q psy9590 201 AEEFGCRLGQEVGYT--IRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT---KLSK 275 (350)
Q Consensus 201 ~~~~~~~~~~~v~~~--~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l---~~~~ 275 (350)
....|.. +..++.. ....+..-...+...||.||+-|..||.++...|++++.||. +..++.+ +..+
T Consensus 477 ~s~tGD~-~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF-------~AhLD~~TA~rVAr 548 (593)
T COG2401 477 RSKTGDL-NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEF-------AAHLDELTAVRVAR 548 (593)
T ss_pred hhccCch-hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh-------hhhcCHHHHHHHHH
Confidence 2211110 0011111 011111122356678999999999999999999999999997 3333322 1111
Q ss_pred hhhcCcccceeccCCcccccc--eeEEEEEeccccccccc-CCEEEEEeCCee
Q psy9590 276 FKKNQRLEPLYNKYEEPNAWR--ISRVVIATNIAETSLTI-DGIFYVVDPGFV 325 (350)
Q Consensus 276 ~~~~~~v~~~~~~~~~~~~~~--~~~vi~sT~iae~s~ti-~d~~~vid~G~~ 325 (350)
- .+++++ -.+.+++||-.|..-.+ ||....+--|.+
T Consensus 549 k--------------iselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 549 K--------------ISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred H--------------HHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 0 011221 14689999999988888 888888877765
No 428
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.98 E-value=5.8e-11 Score=105.87 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=58.9
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccC
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDC 221 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~ 221 (350)
+++.....+|++++|+||||+||||+++++.+..-.. ++.+.-|...+.+ ...+.+-. .+...
T Consensus 20 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~~~l------------~~~d~I~~--~~~~~ 82 (204)
T cd03282 20 NDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEYATL------------PIFNRLLS--RLSND 82 (204)
T ss_pred eeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhhcCc------------cChhheeE--ecCCc
Confidence 3444566678999999999999999999887653111 1111111111111 11111111 11111
Q ss_pred CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 222 TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 222 ~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
....+....+|.||++.. .+.+++.+++++++|||
T Consensus 83 d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~ 117 (204)
T cd03282 83 DSMERNLSTFASEMSETA-YILDYADGDSLVLIDEL 117 (204)
T ss_pred cccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccc
Confidence 123456678999999764 45567899999999999
No 429
>KOG0060|consensus
Probab=98.98 E-value=4.7e-10 Score=110.71 Aligned_cols=117 Identities=19% Similarity=0.239 Sum_probs=71.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC---Ccchhhhh---------HHHHHHHHhccc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ---PRRVAAMS---------VAKRVAEEFGCR 207 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~---~~~i~~~~---------~~~~v~~~~~~~ 207 (350)
+.+++...+.+|+-+.|.||||||||+|++.+.++-+ ..+|++.+-. |..+.+++ ..+.+-......
T Consensus 450 lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~ 528 (659)
T KOG0060|consen 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-STGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAE 528 (659)
T ss_pred eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-cCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccc
Confidence 4566888999999999999999999999999888752 2467664421 11122222 222221110000
Q ss_pred -------cc-------ch--hhhhh-hcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 208 -------LG-------QE--VGYTI-RFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 208 -------~~-------~~--v~~~~-~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
.. +. .+..+ +..+.. ....=...||+|++||+++||-+.++|++-||||.
T Consensus 529 ~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~ 597 (659)
T KOG0060|consen 529 DMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC 597 (659)
T ss_pred cccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech
Confidence 00 00 01111 111111 11122347999999999999999999999999998
No 430
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.93 E-value=1.9e-10 Score=100.51 Aligned_cols=78 Identities=13% Similarity=0.071 Sum_probs=56.9
Q ss_pred cccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCc---c--cccceeEEEEE
Q psy9590 229 KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEE---P--NAWRISRVVIA 303 (350)
Q Consensus 229 ~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~---~--~~~~~~~vi~s 303 (350)
..|+.|+-|+++||.|++.+|+++|.||| +..+++.-..... + +...-.+|++.
T Consensus 157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEP---------------------TN~~e~~Tq~QifRLLs~mNQn~~TtILL~ 215 (330)
T COG4170 157 YELTEGECQKVMIAIALANQPRLLIADEP---------------------TNSMEPTTQAQIFRLLSRLNQNSNTTILLI 215 (330)
T ss_pred chhccCcceeeeeehhhccCCceEeccCC---------------------CcccCccHHHHHHHHHHHhhccCCceEEEE
Confidence 47999999999999999999999999999 2222222110000 0 00011569999
Q ss_pred ecccccccccCCEEEEEeCCeeee
Q psy9590 304 TNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 304 T~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+|++.+.-.-||.+-|+-||...+
T Consensus 216 s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 216 SHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred cccHHHHHHHhhheEEEEeccccc
Confidence 999999888999999999997654
No 431
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.7e-08 Score=93.98 Aligned_cols=78 Identities=14% Similarity=0.062 Sum_probs=50.1
Q ss_pred cccccChhHHHHHHHHhhcC---------CCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccce
Q psy9590 227 LIKYMTDGMLLRECLVDLDL---------NNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI 297 (350)
Q Consensus 227 ~i~~lS~G~~qr~~ia~all---------~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~ 297 (350)
.+..+|+||++++.++++++ .+|+++++||| ...+++.........+.+.
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp---------------------~a~LD~~~~~~l~~~l~~~ 238 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDV---------------------LAELDLGRQAALLDAIEGR 238 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCc---------------------chhcCHHHHHHHHHHhhcC
Confidence 35579999999999999874 79999999999 2233322221111111011
Q ss_pred eEEEEEecccccccccC---CEEEEEeCCee
Q psy9590 298 SRVVIATNIAETSLTID---GIFYVVDPGFV 325 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~---d~~~vid~G~~ 325 (350)
..++++||..+....++ ..++.++.|.+
T Consensus 239 ~q~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 239 VQTFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred CCEEEEeCCchhccchhccCccEEEEeCcEE
Confidence 13667776666665665 56888888875
No 432
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.79 E-value=4.1e-09 Score=92.56 Aligned_cols=87 Identities=16% Similarity=0.131 Sum_probs=47.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCccccccccC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIKYMT 232 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~lS 232 (350)
+++|.|+||+||||+++++....-....|....... ......+.+-. .+............+|
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~---------------~~~~~~d~il~--~~~~~d~~~~~~s~fs 63 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES---------------AELPVFDRIFT--RIGASDSLAQGLSTFM 63 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh---------------eEecccceEEE--EeCCCCchhccccHHH
Confidence 468999999999999998874321111222111000 00000001100 1111112234566788
Q ss_pred hhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 233 DGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 233 ~G~~qr~~ia~all~~~~viIlDEp 257 (350)
+|++|...+.. .+.+|+++|+|||
T Consensus 64 ~~~~~l~~~l~-~~~~~~llllDEp 87 (185)
T smart00534 64 VEMKETANILK-NATENSLVLLDEL 87 (185)
T ss_pred HHHHHHHHHHH-hCCCCeEEEEecC
Confidence 88887544443 3469999999999
No 433
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.79 E-value=3e-08 Score=91.97 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=32.0
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchh
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVA 192 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~ 192 (350)
.-++++|+|||||||+++.+++... +..|++.+ .++++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-~~~G~i~~-~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-TGISQLGL-RGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-CCCceEEE-CCEEee
Confidence 5789999999999999999999984 55888887 344444
No 434
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.78 E-value=4.9e-09 Score=102.14 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=109.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch-hhhhHH----------------------
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV-AAMSVA---------------------- 197 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i-~~~~~~---------------------- 197 (350)
.+++.++++.||+++|.|-.|-|-+-|+..++|+.+.. +|+|.+.. ..+ ...+..
T Consensus 274 v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~-~G~I~l~G-~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~ 351 (501)
T COG3845 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA-SGRILLNG-KDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351 (501)
T ss_pred eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC-CceEEECC-EeccccCCHHHHHhcCCccCChhhccCccccC
Confidence 55689999999999999999999999999999998544 58887742 221 111111
Q ss_pred ----HHHHH-Hhcc----ccc----c----hhhhhhhccc-C-CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCC
Q psy9590 198 ----KRVAE-EFGC----RLG----Q----EVGYTIRFED-C-TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258 (350)
Q Consensus 198 ----~~v~~-~~~~----~~~----~----~v~~~~~~~~-~-~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEph 258 (350)
+++.- .+.. ..+ . .....++-++ . .+...++..||||.+||+.+||-+..+|++||+.+|
T Consensus 352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qP- 430 (501)
T COG3845 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQP- 430 (501)
T ss_pred ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCC-
Confidence 11110 0000 000 0 0011111111 1 233467889999999999999999999999999999
Q ss_pred ccccccccccChhHHHhhhhcCcccceeccCCcccccce----eEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 259 ERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI----SRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 259 er~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+.++|.--.......+... ..|++.+-++|+.+.++|.++||..|++.-
T Consensus 431 --------------------TrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 431 --------------------TRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred --------------------CccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 6777654333221111100 358888889999999999999999999863
No 435
>KOG0066|consensus
Probab=98.73 E-value=8.5e-09 Score=98.91 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=53.7
Q ss_pred ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccceeEEEEEec
Q psy9590 226 TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATN 305 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~sT~ 305 (350)
++-..+|||.++|+.+||||..+|.+|+||||..+ .|+ -.++++..-.. .|+ .+.+|.+|
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNH---LDL---------------NAVIWLdNYLQ-gWk-KTLLIVSH 467 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNH---LDL---------------NAVIWLDNYLQ-GWK-KTLLIVSH 467 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccc---ccc---------------ceeeehhhHHh-hhh-heeEEEec
Confidence 33447999999999999999999999999999333 110 01111111110 111 46788899
Q ss_pred ccccccccCCEEEEEeCCee
Q psy9590 306 IAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 306 iae~s~ti~d~~~vid~G~~ 325 (350)
+--+.-.+|.-++-+|.-+.
T Consensus 468 DQgFLD~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 468 DQGFLDSVCTDIIHLDNQKL 487 (807)
T ss_pred ccchHHHHHHHHhhhhhhhh
Confidence 98888888877777775543
No 436
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.69 E-value=1.6e-08 Score=89.90 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=24.5
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+..|++++|+|||||||||+++++.+..
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4458999999999999999999998754
No 437
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.68 E-value=1.6e-08 Score=90.88 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=49.8
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcccccccc
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIKYM 231 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~l 231 (350)
.+++|.||||+||||+++.+....-....|.......-++.+. +++.. .....+.....+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~---------------d~i~~-----~l~~~~si~~~~ 89 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLV---------------DKIFT-----RMSSRESVSSGQ 89 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeee---------------eeeee-----eeCCccChhhcc
Confidence 7899999999999999999874321122333332111111110 00000 001111112223
Q ss_pred C--hhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 232 T--DGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 232 S--~G~~qr~~ia~all~~~~viIlDEp 257 (350)
| .-+.+|+.++.+++.+++++++|||
T Consensus 90 S~f~~el~~l~~~l~~~~~~slvllDE~ 117 (213)
T cd03281 90 SAFMIDLYQVSKALRLATRRSLVLIDEF 117 (213)
T ss_pred chHHHHHHHHHHHHHhCCCCcEEEeccc
Confidence 3 3456888999999999999999999
No 438
>KOG0065|consensus
Probab=98.60 E-value=4.9e-09 Score=112.21 Aligned_cols=119 Identities=20% Similarity=0.176 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC-CCCCcEEEEcC-C-------cchhh----------hhHHHH
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG-FTARGKIGCTQ-P-------RRVAA----------MSVAKR 199 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~-~~~~G~i~~~~-~-------~~i~~----------~~~~~~ 199 (350)
++.+++.-.+++|-..+|+|++|||||||++.+.+-.. -.-.|.|.+.. | |+..+ .++.+-
T Consensus 805 qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrES 884 (1391)
T KOG0065|consen 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRES 884 (1391)
T ss_pred EhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHH
Confidence 35566666888999999999999999999999988531 11145665531 1 22222 222221
Q ss_pred ---HHHHhcc---ccc---chhhhhhhcccCCCc-cccc----cccChhHHHHHHHHhhcCCCC-cEEEEcCC
Q psy9590 200 ---VAEEFGC---RLG---QEVGYTIRFEDCTSS-ETLI----KYMTDGMLLRECLVDLDLNNY-SVIMLDEA 257 (350)
Q Consensus 200 ---v~~~~~~---~~~---~~v~~~~~~~~~~~~-~~~i----~~lS~G~~qr~~ia~all~~~-~viIlDEp 257 (350)
-|..+.. ... +-|...+++....+. +..+ +-||.+||+|+.||--|+.+| .+|+||||
T Consensus 885 L~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEP 957 (1391)
T KOG0065|consen 885 LRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEP 957 (1391)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCC
Confidence 1222110 111 123333444433321 1222 359999999999999999999 99999999
No 439
>KOG0063|consensus
Probab=98.58 E-value=8.8e-08 Score=91.86 Aligned_cols=107 Identities=21% Similarity=0.357 Sum_probs=66.2
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc----CCcch------hhhhHH-HHHHHHh-cccccchhhhhh
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT----QPRRV------AAMSVA-KRVAEEF-GCRLGQEVGYTI 216 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~----~~~~i------~~~~~~-~~v~~~~-~~~~~~~v~~~~ 216 (350)
...++++.+|+||.||||++++++|...++.+|.+-.. -|..+ +..... +.+...+ ...+...|...+
T Consensus 365 sdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL 444 (592)
T KOG0063|consen 365 SDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPL 444 (592)
T ss_pred CCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhh
Confidence 34568999999999999999999997765555554221 12111 111111 1111111 111111222222
Q ss_pred hcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 217 RFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 217 ~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
..++. .+..+..||||++||++++..|=...++++.|||
T Consensus 445 ~ie~i--~dqevq~lSggelQRval~KOGGKpAdvYliDEp 483 (592)
T KOG0063|consen 445 QIENI--IDQEVQGLSGGELQRVALALCLGKPADVYLIDEP 483 (592)
T ss_pred hHHHH--HhHHhhcCCchhhHHHHHHHhcCCCCceEEecCc
Confidence 22222 2355678999999999999999999999999999
No 440
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.58 E-value=3.1e-08 Score=104.34 Aligned_cols=92 Identities=17% Similarity=0.198 Sum_probs=55.4
Q ss_pred hhcC-CEEEEeCCCCCCHHHHHHHHHhhcCCCCCc-EEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcc
Q psy9590 148 VSDN-QILIVIGETGSGKTTQITQYLAEAGFTARG-KIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSE 225 (350)
Q Consensus 148 i~~g-~v~~liG~nGsGKSTll~~l~~~~~~~~~G-~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~ 225 (350)
+..+ ++++|+||||+||||+++++.+..-....| .+.+.....+.+ .. .+. ..+.+..+..
T Consensus 318 l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~---~d------------~i~--~~i~~~~si~ 380 (771)
T TIGR01069 318 LKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPY---FE------------EIF--ADIGDEQSIE 380 (771)
T ss_pred eCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccc---hh------------hee--eecChHhHHh
Confidence 3344 799999999999999999998762122222 222211111111 00 000 0001111122
Q ss_pred ccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 226 TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
..+..+|+||+++..+++.+ .+++++|+|||
T Consensus 381 ~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~ 411 (771)
T TIGR01069 381 QNLSTFSGHMKNISAILSKT-TENSLVLFDEL 411 (771)
T ss_pred hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCC
Confidence 44567999999999888776 78999999999
No 441
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.50 E-value=8.4e-08 Score=101.29 Aligned_cols=90 Identities=20% Similarity=0.308 Sum_probs=54.6
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCc-EEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCccccc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAGFTARG-KIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLI 228 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G-~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i 228 (350)
.+.+++|.|||++||||+++++....-....| .|.+..+..+. ..+.+ ..+..+..+....+
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~---------------~~~~i--~~~ig~~~si~~~l 388 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIP---------------VFKEI--FADIGDEQSIEQSL 388 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcccc---------------ccceE--EEecCCccchhhch
Confidence 34689999999999999999876432111111 11111000111 00011 01112222233556
Q ss_pred cccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 229 KYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 229 ~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
.++|+||+++..+++++ .+++++|+|||
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~ 416 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDEL 416 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCC
Confidence 78999999999999888 89999999999
No 442
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.37 E-value=8e-07 Score=80.00 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.1
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 152 QILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~ 174 (350)
++++|+|||||||||+++++.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999998764
No 443
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.36 E-value=3.5e-07 Score=82.61 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=31.5
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
+...+.+|++++|.||||+||||+++++.+..-....|....
T Consensus 24 i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 24 IHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred EEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 444567899999999999999999999988432344555443
No 444
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.36 E-value=1.8e-06 Score=74.58 Aligned_cols=180 Identities=19% Similarity=0.318 Sum_probs=90.5
Q ss_pred HhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCC-cEEEEcCCcchhhhhHHHHHHHHhccc
Q psy9590 129 VEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTAR-GKIGCTQPRRVAAMSVAKRVAEEFGCR 207 (350)
Q Consensus 129 ~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~-G~i~~~~~~~i~~~~~~~~v~~~~~~~ 207 (350)
.+.--++|+...+++-+ ++ .-.|+.++|+||+||||++..+....++... |.-.+...-+...-.....+....+.+
T Consensus 17 ~eYp~slPa~r~l~~~L-eF-~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k 94 (233)
T COG3910 17 EEYPFSLPAFRHLEERL-EF-RAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKK 94 (233)
T ss_pred hhCcccchHHHhhhhhc-cc-cCceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCC
Confidence 34446788888777522 23 3569999999999999999988876655432 221111110111001111111001111
Q ss_pred ccchhhhhhh---------cccC----CC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHH
Q psy9590 208 LGQEVGYTIR---------FEDC----TS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKL 273 (350)
Q Consensus 208 ~~~~v~~~~~---------~~~~----~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~ 273 (350)
. ..++.++ ..+. .. .......+|.|+----.+.+.+ .+-.++||||| ..-|++.+.
T Consensus 95 ~--~~g~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEP-------Ea~LSp~RQ 164 (233)
T COG3910 95 P--PIGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEP-------EAALSPSRQ 164 (233)
T ss_pred C--CcceEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCc-------cccCCHHHH
Confidence 0 0111111 1111 11 1234567899997766666554 56699999999 233344333
Q ss_pred HhhhhcCcccceeccCCcccccceeEEEEEecccccccccCC-EEEEEeCCeeeeEeee
Q psy9590 274 SKFKKNQRLEPLYNKYEEPNAWRISRVVIATNIAETSLTIDG-IFYVVDPGFVKQKVYN 331 (350)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~~~~~~~~~vi~sT~iae~s~ti~d-~~~vid~G~~~~~~~~ 331 (350)
.++.. ...+...+. ..+||+||-.= .+.||+ .+|-||.+-+.+.-|+
T Consensus 165 lella------~l~~la~sG----aQ~IiATHSPi-LlAiP~A~I~~~~~~g~~~~~fe 212 (233)
T COG3910 165 LELLA------ILRDLADSG----AQIIIATHSPI-LLAIPGAEIYEISESGIEERDFE 212 (233)
T ss_pred HHHHH------HHHHHHhcC----CeEEEEecChh-heeCCCcEEEEEecCCccccchH
Confidence 22221 001111111 34999999543 335555 3566776655555454
No 445
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.36 E-value=2.8e-06 Score=68.99 Aligned_cols=89 Identities=20% Similarity=0.198 Sum_probs=53.1
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCccccccc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIKY 230 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~ 230 (350)
+..+.|.||+|+||||++..++........+-+.+ .............. ..........
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------------~~~~~~~~~~ 60 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYI-DGEDILEEVLDQLL--------------------LIIVGGKKAS 60 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE-CCEEccccCHHHHH--------------------hhhhhccCCC
Confidence 67899999999999999999998874332123333 22111111000000 0000111123
Q ss_pred cChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 231 MTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 231 lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
.+++...+..+..+--.++++|++||++.-
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~viiiDei~~~ 90 (148)
T smart00382 61 GSGELRLRLALALARKLKPDVLILDEITSL 90 (148)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 466777777777777777999999999544
No 446
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.25 E-value=6.2e-07 Score=95.85 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=58.9
Q ss_pred cccccccChhHHHHHHHHhhcCCCC--cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccce-e
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLNNY--SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRI-S 298 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~~~--~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~-~ 298 (350)
++.+..|||||+||+.||++|+.+| .++||||| +-.+++........ .+.+. .
T Consensus 482 ~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEP---------------------tagLD~~~~~~L~~~L~~L~~~G~ 540 (924)
T TIGR00630 482 SRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEP---------------------SIGLHQRDNERLINTLKRLRDLGN 540 (924)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCC---------------------ccCCCHHHHHHHHHHHHHHHhCCC
Confidence 5678899999999999999999986 89999999 33333332221111 01000 4
Q ss_pred EEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 299 RVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 299 ~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
+||+.||+.+.. ..+|.++++ +.|.+.
T Consensus 541 TVIvVeHd~~~i-~~aD~vi~LgpgaG~~~G~Iv 573 (924)
T TIGR00630 541 TVIVVEHDEETI-RAADYVIDIGPGAGIHGGEVV 573 (924)
T ss_pred EEEEEECCHHHH-hhCCEEEEecccccCCCCEEe
Confidence 699999999986 489999999 888764
No 447
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.25 E-value=5.4e-06 Score=72.77 Aligned_cols=46 Identities=30% Similarity=0.302 Sum_probs=37.2
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP 188 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~ 188 (350)
+-+-..++.|+.++|+|+|||||||+++.++++.+ +..|.+.+..+
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~ 61 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDT 61 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCc
Confidence 33556788999999999999999999999999874 44677766444
No 448
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.23 E-value=2.2e-06 Score=77.09 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=37.5
Q ss_pred ccChhHHHHHHHHhh----cCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccceeEEEEEec
Q psy9590 230 YMTDGMLLRECLVDL----DLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATN 305 (350)
Q Consensus 230 ~lS~G~~qr~~ia~a----ll~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~sT~ 305 (350)
.|||||+..++||-- -....+++||||+ |.-|+.-....+.. ...... +-..+|++||
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEv-------d~~LD~~~~~~l~~------~l~~~~-----~~~Q~ii~Th 197 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEV-------DAALDEQNRKRLAD------LLKELS-----KQSQFIITTH 197 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEEST-------TTTS-HHHHHHHHH------HHHHHT-----TTSEEEEE-S
T ss_pred cccccccccccccccccccccccccccccccc-------cccccccccccccc------cccccc-----cccccccccc
Confidence 799999999988743 3567899999999 33333321111111 000000 0124899999
Q ss_pred ccccccccCCEEEEE
Q psy9590 306 IAETSLTIDGIFYVV 320 (350)
Q Consensus 306 iae~s~ti~d~~~vi 320 (350)
..+.. ..+|..|.|
T Consensus 198 ~~~~~-~~a~~~~~v 211 (220)
T PF02463_consen 198 NPEMF-EDADKLIGV 211 (220)
T ss_dssp -HHHH-TT-SEEEEE
T ss_pred ccccc-ccccccccc
Confidence 87755 455666655
No 449
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.21 E-value=8.4e-07 Score=95.04 Aligned_cols=81 Identities=14% Similarity=0.028 Sum_probs=59.1
Q ss_pred ccccccccChhHHHHHHHHhhcCCCC--cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc-e
Q psy9590 224 SETLIKYMTDGMLLRECLVDLDLNNY--SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-I 297 (350)
Q Consensus 224 ~~~~i~~lS~G~~qr~~ia~all~~~--~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~ 297 (350)
.++.+..||+||+||+.||++|+.+| +++||||| +-.+++.-...... ...+ =
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEP---------------------tagLd~~~~~~L~~~L~~L~~~G 541 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEP---------------------SIGLHQRDNDRLIETLKHLRDLG 541 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCC---------------------ccCCCHHHHHHHHHHHHHHHhCC
Confidence 35788899999999999999999997 99999999 33333322211111 0101 1
Q ss_pred eEEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
.+||++||..+.. ..+|.++++ +.|++.
T Consensus 542 ~TVIvVeH~~~~i-~~aD~vi~LgpgaG~~~G~iv 575 (943)
T PRK00349 542 NTLIVVEHDEDTI-RAADYIVDIGPGAGVHGGEVV 575 (943)
T ss_pred CEEEEEeCCHHHH-HhCCEEEEeccccCCCCCEEe
Confidence 4699999999986 579999999 777763
No 450
>KOG0063|consensus
Probab=98.19 E-value=1.2e-06 Score=84.32 Aligned_cols=110 Identities=18% Similarity=0.214 Sum_probs=64.0
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc-------------------------------CCcchhhhh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT-------------------------------QPRRVAAMS 195 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~-------------------------------~~~~i~~~~ 195 (350)
.-++|++.+++|-||-||||-++.++|..+++ -|..... .|..+..++
T Consensus 96 ~prpg~vlglvgtngigkstAlkilagk~kpn-lg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 96 IPRPGQVLGLVGTNGIGKSTALKILAGKQKPN-LGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CCCcchhccccccCcccHHHHHHHHhCCCCCC-CCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 45689999999999999999999999977543 2221100 001111000
Q ss_pred HH--HHHHHHhccc-ccchhhhhhhcccCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 196 VA--KRVAEEFGCR-LGQEVGYTIRFEDCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 196 ~~--~~v~~~~~~~-~~~~v~~~~~~~~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
-+ ..+....+.. ..+...+.+...... -.++.+..+|||+.||.++|.+.+.+.++.++|||
T Consensus 175 r~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 175 RAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 00 0000000000 000111111111111 12355678999999999999999999999999999
No 451
>PRK13695 putative NTPase; Provisional
Probab=98.18 E-value=4.4e-07 Score=78.72 Aligned_cols=81 Identities=16% Similarity=0.109 Sum_probs=50.6
Q ss_pred ccccccChhHHHHHHHHhhcCCCCcEEEEcCC--CccccccccccChhHHHhhhhcCcccceeccCCcccccceeEEEEE
Q psy9590 226 TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA--HERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIA 303 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all~~~~viIlDEp--her~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~s 303 (350)
+.+..+|++++....++...+.+|+++++||+ .|. .+. .+.+.+ .... ... ..+|++
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~--~~~------~~~~~l-----~~~~----~~~----~~~i~v 132 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMEL--KSP------KFVKAV-----EEVL----DSE----KPVIAT 132 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchh--hhH------HHHHHH-----HHHH----hCC----CeEEEE
Confidence 44567999999999999988999999999995 110 000 000000 0000 001 348999
Q ss_pred ecccccccccCCEEEEEeCCeeeeE
Q psy9590 304 TNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 304 T~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+|... ....+|.......|++...
T Consensus 133 ~h~~~-~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 133 LHRRS-VHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred ECchh-hHHHHHHHhccCCcEEEEE
Confidence 99743 3356677888888877544
No 452
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.13 E-value=7.5e-06 Score=71.32 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=51.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcCCCCCcEE-EEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcccccccc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAGFTARGKI-GCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIKYM 231 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~~~~~G~i-~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~l 231 (350)
++.|.|++|+|||++.-+++...... +..+ .++-.. ......++ +..++..... ..........+.....+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~--~~~~~~~~-~~~~g~~~~~----l~~~g~l~~~d~~~~~~ 72 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEE--SPEELIEN-AESLGWDLER----LEDEGLLAIVDADPDEI 72 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCC--CHHHHHHH-HHHcCCChHH----HHhcCCeEEEecCcccc
Confidence 36799999999999988777654221 2233 222111 11111111 1222332211 11110011112334467
Q ss_pred ChhHHH------HHHHHhhcCCCCcEEEEcCC
Q psy9590 232 TDGMLL------RECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 232 S~G~~q------r~~ia~all~~~~viIlDEp 257 (350)
|+|+.+ +.........+|+++|+|||
T Consensus 73 s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~ 104 (187)
T cd01124 73 GPAESSLRLELIQRLKDAIEEFKAKRVVIDSV 104 (187)
T ss_pred chhhhhhhHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 888887 55555556789999999999
No 453
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.12 E-value=9.6e-06 Score=76.96 Aligned_cols=91 Identities=21% Similarity=0.145 Sum_probs=55.8
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCC
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTS 223 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~ 223 (350)
+...+..|..++++|+|||||||+++.+++..+ +..+.+.+.++..+.... ...+....... .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-~~~~iv~ied~~El~~~~-------------~~~~~l~~~~~---~ 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-KDERIITIEDTREIFLPH-------------PNYVHLFYSKG---G 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-ccccEEEEcCccccCCCC-------------CCEEEEEecCC---C
Confidence 456788999999999999999999999998874 334555553332222110 00111100000 0
Q ss_pred ccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 224 SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 224 ~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
.. .++.-....+..+|-.+|++|++|||
T Consensus 200 --~~----~~~~~~~~~l~~~Lr~~pd~ii~gE~ 227 (308)
T TIGR02788 200 --QG----LAKVTPKDLLQSCLRMRPDRIILGEL 227 (308)
T ss_pred --CC----cCccCHHHHHHHHhcCCCCeEEEecc
Confidence 00 12223344667788899999999999
No 454
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.12 E-value=1.9e-06 Score=88.62 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHh
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLA 173 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~ 173 (350)
++|.-.|+=|.+++|.|-+|||||||+...+.
T Consensus 618 kni~v~iPLg~~t~VTGVSGSGKSTLIn~tL~ 649 (935)
T COG0178 618 KNIDVEIPLGVFTCVTGVSGSGKSTLINDTLV 649 (935)
T ss_pred ccceeecccccEEEEEecCCCCHHHhHHHHHH
Confidence 45677888999999999999999999976553
No 455
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.11 E-value=3.3e-06 Score=70.29 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=71.3
Q ss_pred hhcCCEEEEeCCCCCCHHHH-HHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcc-cCCCcc
Q psy9590 148 VSDNQILIVIGETGSGKTTQ-ITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFE-DCTSSE 225 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTl-l~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~-~~~~~~ 225 (350)
+.+|++..|--.+|+|||+. ++.++... ...++++.+..|.++.+....+.+. +.+ +.+..... ......
T Consensus 1 ~~kg~~~~~d~hpGaGKTr~vlp~~~~~~-i~~~~rvLvL~PTRvva~em~~aL~---~~~----~~~~t~~~~~~~~g~ 72 (148)
T PF07652_consen 1 FRKGELTVLDLHPGAGKTRRVLPEIVREA-IKRRLRVLVLAPTRVVAEEMYEALK---GLP----VRFHTNARMRTHFGS 72 (148)
T ss_dssp GSTTEEEEEE--TTSSTTTTHHHHHHHHH-HHTT--EEEEESSHHHHHHHHHHTT---TSS----EEEESTTSS----SS
T ss_pred CCCCceeEEecCCCCCCcccccHHHHHHH-HHccCeEEEecccHHHHHHHHHHHh---cCC----cccCceeeeccccCC
Confidence 35789999999999999994 88777765 4557888888888776554443332 222 11111111 111223
Q ss_pred ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhh
Q psy9590 226 TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFK 277 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~ 277 (350)
..+..|+.+-.-+..+--.-+.++++||+||.|.-+..+-...+.++...+-
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~ 124 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES 124 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc
Confidence 4555566666655544455578999999999999887776666655444433
No 456
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.09 E-value=2.5e-05 Score=64.02 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=28.0
Q ss_pred HHHHHHHhhc--CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 141 KHELIKAVSD--NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 141 ~~~i~~~i~~--g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+.+...+.. +..+.|.|++|+||||+++.+....
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555544 7899999999999999999998876
No 457
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.05 E-value=2.9e-06 Score=95.42 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=55.5
Q ss_pred cccccccChhHHHHHHHHhhcCCCC--cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc-ee
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLNNY--SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-IS 298 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~~~--~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~~ 298 (350)
++.+..||+||+||+.||++|+.+| .++||||| +-.+++...+.... ...+ =.
T Consensus 471 dR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEP---------------------TagLD~~~~~~L~~lL~~L~~~G~ 529 (1809)
T PRK00635 471 ERALATLSGGEQERTALAKHLGAELIGITYILDEP---------------------SIGLHPQDTHKLINVIKKLRDQGN 529 (1809)
T ss_pred CCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECC---------------------ccCCCHHHHHHHHHHHHHHHhCCC
Confidence 5677899999999999999999999 89999999 33333322221111 0000 14
Q ss_pred EEEEEecccccccccCCEEEEEe
Q psy9590 299 RVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 299 ~vi~sT~iae~s~ti~d~~~vid 321 (350)
+||+.||+.+ ...++|.++++.
T Consensus 530 TVIvVeHd~~-vi~~aDrVi~L~ 551 (1809)
T PRK00635 530 TVLLVEHDEQ-MISLADRIIDIG 551 (1809)
T ss_pred EEEEEeCcHH-HHHhCCEEEEEc
Confidence 6999999999 668999999996
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.04 E-value=1.1e-05 Score=71.53 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=26.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
+++|.||+||||||++..+++......++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t 35 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILT 35 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEE
Confidence 689999999999999999888774444556544
No 459
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.01 E-value=4.6e-05 Score=76.30 Aligned_cols=118 Identities=23% Similarity=0.210 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHH---h-ccccc---
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEE---F-GCRLG--- 209 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~---~-~~~~~--- 209 (350)
.++.+.+..+..|.-+.+.+|+|||||+. ++.+...........+.+.-|.+--+....+.+... . +....
T Consensus 29 ~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~ 108 (460)
T PRK11776 29 PIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLC 108 (460)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 34555666677888899999999999975 444333321111223444345443333333222111 1 11100
Q ss_pred --chhhhhhhcccCCCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCc
Q psy9590 210 --QEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHE 259 (350)
Q Consensus 210 --~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEphe 259 (350)
..+..... . ......+.-.|.|......-... .+.+.+++|+||+|+
T Consensus 109 Gg~~~~~~~~--~-l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 109 GGVPMGPQID--S-LEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred CCCChHHHHH--H-hcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 00000000 0 01223455567777766544333 377899999999995
No 460
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.98 E-value=2.1e-05 Score=66.19 Aligned_cols=94 Identities=21% Similarity=0.198 Sum_probs=51.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-cchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcccccccc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-RRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIKYM 231 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~l 231 (350)
+++|.|++|+||||++..+++.... .++.+.+... ..... ...+.. .+.... ......+..... ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~--~~~~~~-~~~~~~---~~~~~~~~~~~~-----~~~ 68 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEE--LTERLI-GESLKG---ALDNLIIVFATA-----DDP 68 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHH--HHHHHh-hhhhcc---ccccEEEEEcCC-----CCC
Confidence 4689999999999999999987743 3566554322 11111 111110 000000 000000100000 112
Q ss_pred ChhHHHHHHHHhhcCCCCcEEEEcCCC
Q psy9590 232 TDGMLLRECLVDLDLNNYSVIMLDEAH 258 (350)
Q Consensus 232 S~G~~qr~~ia~all~~~~viIlDEph 258 (350)
+.+..++...+.+...+++++|+||++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~lviDe~~ 95 (165)
T cd01120 69 AAARLLSKAERLRERGGDDLIILDELT 95 (165)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEcHH
Confidence 344555677788889999999999994
No 461
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.98 E-value=1.8e-05 Score=78.95 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=43.5
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCc-EE--EEcCCcchhhhhHHHHHHHHhccc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGFTARG-KI--GCTQPRRVAAMSVAKRVAEEFGCR 207 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G-~i--~~~~~~~i~~~~~~~~v~~~~~~~ 207 (350)
++.|++++++||||+||||++..+.+.+....++ +| ...++.++++......++..++..
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 3568899999999999999999999866332222 34 333667788777777777777654
No 462
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.97 E-value=5.8e-06 Score=75.93 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=28.8
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.+..+..||.++|+|++|+||||+++.+.....
T Consensus 9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred eecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 445678999999999999999999999988663
No 463
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.96 E-value=2.3e-06 Score=77.04 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=27.0
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~ 174 (350)
+++....+++++++|.||||+||||+++++...
T Consensus 21 ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 21 NDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred eeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 344455667899999999999999999987765
No 464
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=3.8e-05 Score=75.46 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=44.0
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcC---CCCCcEEEEcCCcchhhhhHHHHHHHHhccc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAG---FTARGKIGCTQPRRVAAMSVAKRVAEEFGCR 207 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~---~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~ 207 (350)
++.|++++|+|+||+||||++..+.+... ....+.+...+..++++......++..++.+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence 35789999999999999999998887531 1123344555777888877777777776654
No 465
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.93 E-value=3.2e-05 Score=62.64 Aligned_cols=109 Identities=34% Similarity=0.345 Sum_probs=59.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcCCC-CCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCC------Ccc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAGFT-ARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCT------SSE 225 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~~~-~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~------~~~ 225 (350)
.+.+.|++|+|||+++..++...... ..+.+.+..|...........+...... ...+.......... ...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGK 79 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCC
Confidence 46799999999999887666654221 2356666677766555555544443321 11111111111111 122
Q ss_pred ccccccChhHHHHHHHHh-hcCCCCcEEEEcCCCccccc
Q psy9590 226 TLIKYMTDGMLLRECLVD-LDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~-all~~~~viIlDEpher~~~ 263 (350)
..+...+-.+..+..... ....+.+++|+||.|.-...
T Consensus 80 ~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~ 118 (144)
T cd00046 80 TDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ 118 (144)
T ss_pred CCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc
Confidence 334455666554443332 23557899999999765443
No 466
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.93 E-value=9.2e-05 Score=76.84 Aligned_cols=119 Identities=24% Similarity=0.201 Sum_probs=66.2
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHH--HHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchh----
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQI--TQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEV---- 212 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll--~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v---- 212 (350)
.++...+..+..|.-+.+.+|||+|||... +++-..........+.+..|.+--+..+++.+........+..+
T Consensus 31 piQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~ 110 (629)
T PRK11634 31 PIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALY 110 (629)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEE
Confidence 345556677778888999999999999853 33333321122346666667665444444443322211101111
Q ss_pred -----hhhhhcccCCCccccccccChhHHHHHHHHhhc-CCCCcEEEEcCCCcc
Q psy9590 213 -----GYTIRFEDCTSSETLIKYMTDGMLLRECLVDLD-LNNYSVIMLDEAHER 260 (350)
Q Consensus 213 -----~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~al-l~~~~viIlDEpher 260 (350)
...++. ......|.-.|.|..........+ +.+.+++||||+|+-
T Consensus 111 gG~~~~~q~~~---l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~m 161 (629)
T PRK11634 111 GGQRYDVQLRA---LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM 161 (629)
T ss_pred CCcCHHHHHHH---hcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHH
Confidence 011100 011234556677777665544433 788899999999974
No 467
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.92 E-value=0.00011 Score=67.88 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCC-EEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 140 LKHELIKAVSDNQ-ILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 140 ~~~~i~~~i~~g~-v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+...+...++.+. +++|.|++|+||||+++.+.....
T Consensus 31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3444555566655 899999999999999999988763
No 468
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.89 E-value=7.7e-06 Score=80.68 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT 186 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~ 186 (350)
+.+++..++.+|++++|+||+||||||+++ .+...++.+|.|.+.
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ld 65 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLD 65 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEEC
Confidence 455666679999999999999999999999 555545545578763
No 469
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.89 E-value=4e-05 Score=68.55 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=22.0
Q ss_pred HHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 235 MLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 235 ~~qr~~ia~all~~~~viIlDEp 257 (350)
++++..||++++.+|+++++|||
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp 179 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAP 179 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCc
Confidence 78889999999999999999999
No 470
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=97.87 E-value=1.1e-05 Score=80.83 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.++.++++.+.+.|.+. .+.+.++||+++.+++..+++.-..|..+|++||++||..|.||+|.+||+.+
T Consensus 248 F~~t~~~~~~l~~~L~~~---------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d 318 (460)
T PRK11776 248 FCNTKKECQEVADALNAQ---------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYE 318 (460)
T ss_pred EECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEec
Confidence 677788888877777532 36788999999999999999888889999999999999999999999999988
Q ss_pred cee
Q psy9590 81 FVK 83 (350)
Q Consensus 81 ~~k 83 (350)
+.+
T Consensus 319 ~p~ 321 (460)
T PRK11776 319 LAR 321 (460)
T ss_pred CCC
Confidence 764
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.84 E-value=5.7e-05 Score=72.78 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=29.1
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
.++.++.|.||+||||||+++.++.......+++|..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~t 156 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIIT 156 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEE
Confidence 4578999999999999999999888764333566544
No 472
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.83 E-value=1e-05 Score=83.04 Aligned_cols=75 Identities=13% Similarity=0.112 Sum_probs=52.6
Q ss_pred cccChhHHHHHHHHhhcCCC----CcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccceeEEE
Q psy9590 229 KYMTDGMLLRECLVDLDLNN----YSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVV 301 (350)
Q Consensus 229 ~~lS~G~~qr~~ia~all~~----~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi 301 (350)
+.+||||++|++||++++.. |+++||||| ..+++......... ...+-+.||
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp---------------------~~gld~~~~~~~~~~l~~l~~~~~vi 497 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEV---------------------DVGVSGETAQAIAKKLAQLSERHQVL 497 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECC---------------------CCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 58999999999999999875 699999999 22222221111100 000114599
Q ss_pred EEecccccccccCCEEEEEeCCee
Q psy9590 302 IATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 302 ~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
++||..+.. ..+|..++|+.|..
T Consensus 498 ~iTH~~~~~-~~ad~~~~l~k~~~ 520 (563)
T TIGR00634 498 CVTHLPQVA-AHADAHFKVEKEGL 520 (563)
T ss_pred EEEChHHHH-HhcCeEEEEEEccC
Confidence 999999877 58999999987643
No 473
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.82 E-value=7.5e-06 Score=65.06 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=26.7
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYL 172 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~ 172 (350)
+++..++.+|++++|+||+||||||++++++
T Consensus 6 ~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 6 HGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3455678889999999999999999999875
No 474
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=97.82 E-value=0.00017 Score=71.58 Aligned_cols=121 Identities=23% Similarity=0.229 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCC----CCCcEEEEcCCcchhhhhHHHHHHH---Hhccccc
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGF----TARGKIGCTQPRRVAAMSVAKRVAE---EFGCRLG 209 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~----~~~G~i~~~~~~~i~~~~~~~~v~~---~~~~~~~ 209 (350)
.++.+.+..+-.|.-+.+.+|+|+|||.. ++.+..+... ...+.+.+..|.+.-+....+.+.. ..+....
T Consensus 26 ~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~ 105 (434)
T PRK11192 26 AIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIA 105 (434)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEE
Confidence 45555566666787799999999999984 4444333211 1124666666765444443333222 2222111
Q ss_pred chhhhh-h-hcccCCCccccccccChhHHHHHHHHhhc-CCCCcEEEEcCCCc
Q psy9590 210 QEVGYT-I-RFEDCTSSETLIKYMTDGMLLRECLVDLD-LNNYSVIMLDEAHE 259 (350)
Q Consensus 210 ~~v~~~-~-~~~~~~~~~~~i~~lS~G~~qr~~ia~al-l~~~~viIlDEphe 259 (350)
...+.. . ........+..+...|.|..........+ +.+.++||+||+|.
T Consensus 106 ~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~ 158 (434)
T PRK11192 106 TITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR 158 (434)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH
Confidence 111100 0 00001111233555677766655444443 67889999999993
No 475
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.82 E-value=2.2e-05 Score=64.09 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=19.5
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+++.++.|.|++|+||||+++.+....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998865
No 476
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.81 E-value=1.2e-05 Score=88.18 Aligned_cols=79 Identities=13% Similarity=-0.014 Sum_probs=56.7
Q ss_pred ccccccccChhHHHHHHHHhhcCC----------CCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc-
Q psy9590 224 SETLIKYMTDGMLLRECLVDLDLN----------NYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP- 292 (350)
Q Consensus 224 ~~~~i~~lS~G~~qr~~ia~all~----------~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~- 292 (350)
..+.+..|||||++++.||.+|+. +|+++|+||| |+ .+++........
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp-------------------~~--~LD~~~~~~~~~~ 1002 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEG-------------------FG--SLDEDSLDRAIGI 1002 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCC-------------------CC--CCCHHHHHHHHHH
Confidence 346788999999999999999975 7999999999 22 222222111110
Q ss_pred --cccc-eeEEEEEecccccccccCCEEEEEeCC
Q psy9590 293 --NAWR-ISRVVIATNIAETSLTIDGIFYVVDPG 323 (350)
Q Consensus 293 --~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G 323 (350)
.... -+.|+|+||+.+....+++.+.|+..|
T Consensus 1003 l~~l~~~g~~i~iisH~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1003 LDAIREGSKMIGIISHVPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred HHHHHhCCCEEEEEeCcHHHHHhhCCEEEEEECC
Confidence 0000 145899999999999999999999654
No 477
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.73 E-value=0.00012 Score=66.47 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=23.5
Q ss_pred HhhcCCEEEEeCCCCCCHHHHH-HHHHhhc
Q psy9590 147 AVSDNQILIVIGETGSGKTTQI-TQYLAEA 175 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll-~~l~~~~ 175 (350)
-+++|++++|.|++||||||+. ..+.+..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999995 4445443
No 478
>PRK01172 ski2-like helicase; Provisional
Probab=97.71 E-value=2.8e-05 Score=81.51 Aligned_cols=106 Identities=14% Similarity=0.072 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCC------C----------CCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecc
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPD------V----------PELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIA 64 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~------~----------~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatnia 64 (350)
|+|+.++++.+++.|.+.......- . -..-+..+||+|+.+++..+++.-..|..||++||+++
T Consensus 242 F~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~l 321 (674)
T PRK01172 242 FVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTL 321 (674)
T ss_pred EeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchh
Confidence 8899999999988887654321100 0 00126678999999999999988888999999999999
Q ss_pred cceeeecCeEEEeeCCceeeeeeeccccccccccccCCCCccchhhhhcCCC
Q psy9590 65 ETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGK 116 (350)
Q Consensus 65 ets~ti~~i~~viD~g~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k 116 (350)
+.++.+|+.++||+ +. ..|+. ....++|...-.++-+++|+.
T Consensus 322 a~Gvnipa~~VII~-~~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~ 363 (674)
T PRK01172 322 AAGVNLPARLVIVR-DI---TRYGN------GGIRYLSNMEIKQMIGRAGRP 363 (674)
T ss_pred hccCCCcceEEEEc-Cc---eEeCC------CCceeCCHHHHHHHhhcCCCC
Confidence 99999999999997 22 33332 223456666566777777654
No 479
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.70 E-value=0.00019 Score=68.30 Aligned_cols=92 Identities=18% Similarity=0.257 Sum_probs=54.6
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc--CCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcccc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT--QPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETL 227 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~--~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~ 227 (350)
.+++++++||||+||||++..+.+... ..+++|.+. ++.+.++.......+...+.... . .. ...+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~------~--~~-~~~d-- 180 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVI------A--QK-EGAD-- 180 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCccchhhHHHHHHHHHHcCceEE------E--eC-CCCC--
Confidence 578999999999999999999998874 445676543 44455544433333333332210 0 00 0000
Q ss_pred ccccChhHHHHHHHHhhcCCCCcEEEEcCCC
Q psy9590 228 IKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258 (350)
Q Consensus 228 i~~lS~G~~qr~~ia~all~~~~viIlDEph 258 (350)
......-.+..+...+++++|+|=|-
T Consensus 181 -----pa~~v~~~l~~~~~~~~D~ViIDTaG 206 (318)
T PRK10416 181 -----PASVAFDAIQAAKARGIDVLIIDTAG 206 (318)
T ss_pred -----HHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 01122233556667899999999883
No 480
>PRK10869 recombination and repair protein; Provisional
Probab=97.70 E-value=2.6e-05 Score=79.67 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=51.7
Q ss_pred cccChhHHHHHHHHhhcCC----CCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc---ccceeEEE
Q psy9590 229 KYMTDGMLLRECLVDLDLN----NYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWRISRVV 301 (350)
Q Consensus 229 ~~lS~G~~qr~~ia~all~----~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~~vi 301 (350)
+.+||||++|++||++++. +|+++||||| ..+++.......... ..+-..||
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEp---------------------d~gld~~~~~~v~~~l~~l~~~~qvi 487 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEV---------------------DVGISGPTAAVVGKLLRQLGESTQVM 487 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECC---------------------CCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 3689999999999999986 6899999999 222222211111000 00114599
Q ss_pred EEecccccccccCCEEEEEeCCe
Q psy9590 302 IATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 302 ~sT~iae~s~ti~d~~~vid~G~ 324 (350)
++||.+... ..+|..|+|+.+.
T Consensus 488 ~iTH~~~~~-~~ad~~~~v~k~~ 509 (553)
T PRK10869 488 CVTHLPQVA-GCGHQHFFVSKET 509 (553)
T ss_pred EEecCHHHH-HhCCEEEEEeccc
Confidence 999999865 8999999998754
No 481
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.69 E-value=0.0001 Score=72.61 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=62.9
Q ss_pred HHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCc
Q psy9590 145 IKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSS 224 (350)
Q Consensus 145 ~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~ 224 (350)
+..+.+|+.++|+|++|+||||++.++++... +..|.+.....+. ..+.+++...++..- ..+.+-+
T Consensus 150 ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGerg---~ev~e~~~~~l~~~g---l~~tvvv------ 216 (432)
T PRK06793 150 MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-ADINVISLVGERG---REVKDFIRKELGEEG---MRKSVVV------ 216 (432)
T ss_pred cceecCCcEEEEECCCCCChHHHHHHHhccCC-CCeEEEEeCCCCc---ccHHHHHHHHhhhcc---cceeEEE------
Confidence 57899999999999999999999999998874 3355554322111 222233332222110 1010001
Q ss_pred cccccccChhHHHHHHHHhhcC-------CCCcEEEEcCC
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDL-------NNYSVIMLDEA 257 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all-------~~~~viIlDEp 257 (350)
......|.|+++|...+...+ .++-++++|++
T Consensus 217 -~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 217 -VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred -EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecch
Confidence 111246899999998776665 78889999998
No 482
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.64 E-value=3.6e-05 Score=78.90 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=52.0
Q ss_pred cccccChhHHHHHHHHhhcC----------CCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccc
Q psy9590 227 LIKYMTDGMLLRECLVDLDL----------NNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR 296 (350)
Q Consensus 227 ~i~~lS~G~~qr~~ia~all----------~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 296 (350)
.+..||+||+||+.||++++ .+|+++|||||-...++....-. +.+++. .. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~---~~~~l~---------~~--~~--- 527 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKA---LLSILD---------SL--KD--- 527 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHH---HHHHHH---------hC--CC---
Confidence 45789999999999998887 59999999999222222211111 111111 10 01
Q ss_pred eeEEEEEecccccccccCCEEEEEeC-Cee
Q psy9590 297 ISRVVIATNIAETSLTIDGIFYVVDP-GFV 325 (350)
Q Consensus 297 ~~~vi~sT~iae~s~ti~d~~~vid~-G~~ 325 (350)
..||++||..+.. ..+|.+++++. |..
T Consensus 528 -~~iiiish~~~~~-~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 528 -TNVFVISHKDHDP-QKFDRHLKMEKVGRF 555 (562)
T ss_pred -CeEEEEECchhch-hhhhcEEEEEEECCe
Confidence 3499999996654 66788888885 444
No 483
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.63 E-value=4.8e-05 Score=67.25 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+++|.|++||||||+.+++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 484
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.63 E-value=6e-05 Score=53.72 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.2
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
|.++.|.|+|||||||++..+....
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999887765
No 485
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.61 E-value=0.00028 Score=60.68 Aligned_cols=125 Identities=26% Similarity=0.172 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhcC-CEEEEeCCCCCCHHHHHHHHHhhcCCC-CCcEEEEcCCcchhhhhHHHHHHHHhcccc---cchh
Q psy9590 138 YKLKHELIKAVSDN-QILIVIGETGSGKTTQITQYLAEAGFT-ARGKIGCTQPRRVAAMSVAKRVAEEFGCRL---GQEV 212 (350)
Q Consensus 138 ~~~~~~i~~~i~~g-~v~~liG~nGsGKSTll~~l~~~~~~~-~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~---~~~v 212 (350)
...+.+++..+..+ ..+.+.|++|+|||+.+-..+...... ....+.+..|...........+........ ....
T Consensus 10 ~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (201)
T smart00487 10 RPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLY 89 (201)
T ss_pred CHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 34555677777776 899999999999999554444433111 124566656654443334344433321100 0000
Q ss_pred hh-h--hhcccCCCccccccccChhHHHHHHHHh-hcCCCCcEEEEcCCCcccc
Q psy9590 213 GY-T--IRFEDCTSSETLIKYMTDGMLLRECLVD-LDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 213 ~~-~--~~~~~~~~~~~~i~~lS~G~~qr~~ia~-all~~~~viIlDEpher~~ 262 (350)
+. . ..+.........+...+.+...+..-.. ....+.+++|+||+|.-..
T Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 143 (201)
T smart00487 90 GGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD 143 (201)
T ss_pred CCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc
Confidence 00 0 0000001111144445555444443322 2455778999999988764
No 486
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00018 Score=69.76 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=40.0
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCC-cEEE--EcCCcchhhhhHHHHHHHHhcc
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTAR-GKIG--CTQPRRVAAMSVAKRVAEEFGC 206 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~-G~i~--~~~~~~i~~~~~~~~v~~~~~~ 206 (350)
.++.|.+++|+||||+||||++..+........+ .+|. ..+..++++......++..++.
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv 195 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 195 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCC
Confidence 4677999999999999999999988875421111 1332 2345566666655666655554
No 487
>KOG0065|consensus
Probab=97.56 E-value=3.7e-05 Score=83.28 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC--CCcEEEEc--------CCcchhhh----------hH--
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT--ARGKIGCT--------QPRRVAAM----------SV-- 196 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~--~~G~i~~~--------~~~~i~~~----------~~-- 196 (350)
+..+++.--+++|+.+.++|++||||||+++.+.|..... ..|.|... .++.+++. ++
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 3455677788999999999999999999999999865311 12333221 01111111 11
Q ss_pred -HHHHHHHhcc-------cccc----hhhhhhhcccCC------CccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 197 -AKRVAEEFGC-------RLGQ----EVGYTIRFEDCT------SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 197 -~~~v~~~~~~-------~~~~----~v~~~~~~~~~~------~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
.+..+...+. ...+ ...+.+...+.. -.+..++-.|||||+|+.++..++.+++++.+||+
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 1222222111 0000 112222222211 12345568999999999999999999999999999
No 488
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.56 E-value=0.0003 Score=59.80 Aligned_cols=123 Identities=22% Similarity=0.211 Sum_probs=67.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhh-cCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhh--
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAE-AGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTI-- 216 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~-~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~-- 216 (350)
++.+++..+..|+-+.+.||+|+|||+.....+.. ......+.+.+..|.+-.+......+...+... ...+....
T Consensus 3 ~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~ 81 (169)
T PF00270_consen 3 LQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNT-NVRVVLLHGG 81 (169)
T ss_dssp HHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTT-TSSEEEESTT
T ss_pred HHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccc-cccccccccc
Confidence 45667777778888999999999999986544432 111123466665675544444444444333321 00000000
Q ss_pred ---h--cccCCCccccccccChhHHHHHHHHh-hcCCCCcEEEEcCCCccccc
Q psy9590 217 ---R--FEDCTSSETLIKYMTDGMLLRECLVD-LDLNNYSVIMLDEAHERTIH 263 (350)
Q Consensus 217 ---~--~~~~~~~~~~i~~lS~G~~qr~~ia~-all~~~~viIlDEpher~~~ 263 (350)
. .......+..+...|.++..+..-.. ..+.+.+++|+||.|.-...
T Consensus 82 ~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 82 QSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE 134 (169)
T ss_dssp SCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT
T ss_pred ccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc
Confidence 0 00000112344456666666555431 13455899999999887653
No 489
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.52 E-value=0.00071 Score=70.17 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=25.3
Q ss_pred eEEEEEecccccccccCCEEEEEeCCee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
.+|++||+.++.++.++|+.+||+-+..
T Consensus 287 ~~VLVaT~a~~~GIDip~V~~VI~~d~P 314 (607)
T PRK11057 287 LQIVVATVAFGMGINKPNVRFVVHFDIP 314 (607)
T ss_pred CCEEEEechhhccCCCCCcCEEEEeCCC
Confidence 5799999999999999999999986654
No 490
>PRK03918 chromosome segregation protein; Provisional
Probab=97.50 E-value=0.00011 Score=79.42 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=50.3
Q ss_pred ccccccChhHHH------HHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc----
Q psy9590 226 TLIKYMTDGMLL------RECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---- 295 (350)
Q Consensus 226 ~~i~~lS~G~~q------r~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---- 295 (350)
..+..||+||++ |++++++++.+|+++|+||| +.++++.........+.
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp---------------------~~~lD~~~~~~l~~~l~~~~~ 842 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEP---------------------TPFLDEERRRKLVDIMERYLR 842 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCC---------------------CcccCHHHHHHHHHHHHHHHh
Confidence 567789999999 45566688899999999999 22222222111110000
Q ss_pred ceeEEEEEecccccccccCCEEEEEe
Q psy9590 296 RISRVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 296 ~~~~vi~sT~iae~s~ti~d~~~vid 321 (350)
...+||++||+.+ ...++|.+++|+
T Consensus 843 ~~~~iiiith~~~-~~~~~d~~~~l~ 867 (880)
T PRK03918 843 KIPQVIIVSHDEE-LKDAADYVIRVS 867 (880)
T ss_pred cCCEEEEEECCHH-HHHhCCeEEEEE
Confidence 1135999999987 457899999998
No 491
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.49 E-value=0.0004 Score=61.56 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=42.4
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhcCCCCCcE--EEEcCCcchhhhhHHHHHHHHhcccc
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEAGFTARGK--IGCTQPRRVAAMSVAKRVAEEFGCRL 208 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~~~~~~G~--i~~~~~~~i~~~~~~~~v~~~~~~~~ 208 (350)
.+++++||||+||||.+-.+....... +-+ +...+..|+++..+.+.++..++.+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhcccc
Confidence 478999999999999988777765333 323 34457788999999899998888653
No 492
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.46 E-value=0.00012 Score=75.78 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++++.+++.|.+ ..+.+.++||+|+.+++.++++.-..|.-+|++||++++..|.+|+|++||+.+
T Consensus 242 Fc~tr~~~e~la~~L~~---------~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 242 YCNSRAKVEDTAARLQS---------RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred EECcHHHHHHHHHHHHh---------CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeC
Confidence 45566777766666643 136688999999999999998777778899999999999999999999999866
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
+.
T Consensus 313 ~P 314 (607)
T PRK11057 313 IP 314 (607)
T ss_pred CC
Confidence 53
No 493
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.42 E-value=0.00011 Score=65.61 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=25.4
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
++|.+++|+|+|||||||+++.+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999998764
No 494
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.40 E-value=0.00053 Score=64.27 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=34.0
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcCCCCC-cEE--EEcCCcchhhhhHHHHHHHH
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAGFTAR-GKI--GCTQPRRVAAMSVAKRVAEE 203 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~~~~~-G~i--~~~~~~~i~~~~~~~~v~~~ 203 (350)
.+.+++|+||+|+||||++-.+........+ .+| ...++.+.++.......+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~ 249 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKI 249 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHH
Confidence 5679999999999999999888876532211 233 33355555554433333433
No 495
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.40 E-value=0.00043 Score=62.87 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=60.6
Q ss_pred HHHHHH-HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc-CCcchhhhhHHHHHHHHhcccccchhhh-hhh
Q psy9590 141 KHELIK-AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT-QPRRVAAMSVAKRVAEEFGCRLGQEVGY-TIR 217 (350)
Q Consensus 141 ~~~i~~-~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~-~~~~i~~~~~~~~v~~~~~~~~~~~v~~-~~~ 217 (350)
.++++. -++.|.++.|.|++|+||||+..+++.... ..+.++.+. .... .....++ +..++....+.+.. .+.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~~--~~~~~~~-~~~~g~~~~~~~~~g~l~ 89 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL-KQGKKVYVITTENT--SKSYLKQ-MESVKIDISDFFLWGYLR 89 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH-hCCCEEEEEEcCCC--HHHHHHH-HHHCCCChhHHHhCCCce
Confidence 344443 677899999999999999999998875431 223444332 1111 1111122 12233322221110 011
Q ss_pred cccCCCccccccccChhHHHHHHHHhhcCC--CCcEEEEcCC
Q psy9590 218 FEDCTSSETLIKYMTDGMLLRECLVDLDLN--NYSVIMLDEA 257 (350)
Q Consensus 218 ~~~~~~~~~~i~~lS~G~~qr~~ia~all~--~~~viIlDEp 257 (350)
+..... ......+.++.+.+.....++. +|+++++|||
T Consensus 90 i~~~~~--~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 90 IFPLNT--EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred EEeccc--cccccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence 111111 1223456677777777766665 9999999999
No 496
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.40 E-value=0.0002 Score=64.87 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcE
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGK 182 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~ 182 (350)
+......+...-.+..+++|.|+|||||||+++.+.+..... +|.
T Consensus 19 l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~-~g~ 63 (229)
T PRK09270 19 LLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQD-GEL 63 (229)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhc-cCC
Confidence 333344444444556799999999999999999999987533 555
No 497
>PRK01156 chromosome segregation protein; Provisional
Probab=97.40 E-value=0.00018 Score=78.02 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=55.1
Q ss_pred ccccccChhHHHHHHH------HhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc-------
Q psy9590 226 TLIKYMTDGMLLRECL------VDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP------- 292 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~i------a~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~------- 292 (350)
..+..||||+++++++ |++++.+|++++|||| +.+++.........
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEp---------------------t~~lD~~~~~~l~~~l~~~~~ 855 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEP---------------------TAFLDEDRRTNLKDIIEYSLK 855 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCC---------------------CCcCCHHHHHHHHHHHHHHHH
Confidence 4567899999999865 5899999999999999 22222221111000
Q ss_pred cccceeEEEEEecccccccccCCEEEEEe--CCeeeeE
Q psy9590 293 NAWRISRVVIATNIAETSLTIDGIFYVVD--PGFVKQK 328 (350)
Q Consensus 293 ~~~~~~~vi~sT~iae~s~ti~d~~~vid--~G~~~~~ 328 (350)
...+...||+.||..+.. ..||.++.+. +|..+..
T Consensus 856 ~~~~~~~ii~ish~~~~~-~~~d~ii~~~~~~~~s~v~ 892 (895)
T PRK01156 856 DSSDIPQVIMISHHRELL-SVADVAYEVKKSSGSSKVI 892 (895)
T ss_pred hcCCCCeEEEEECchHHH-HhcCeEEEEEecCCeeEEe
Confidence 000013599999999865 7899999998 5665443
No 498
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.39 E-value=0.00014 Score=63.71 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=23.5
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
|++++|+|||||||||+++.+.+...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999988653
No 499
>PRK01172 ski2-like helicase; Provisional
Probab=97.38 E-value=0.00052 Score=72.09 Aligned_cols=122 Identities=23% Similarity=0.160 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhh
Q psy9590 136 PIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYT 215 (350)
Q Consensus 136 pi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~ 215 (350)
..+.++.+.+..+.+|+-+.+.+|||||||+.....+... ...++++.+.-|.+.-+....+.+.... ..+..++..
T Consensus 22 ~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~-l~~~~k~v~i~P~raLa~q~~~~~~~l~--~~g~~v~~~ 98 (674)
T PRK01172 22 ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYET-FLAGLKSIYIVPLRSLAMEKYEELSRLR--SLGMRVKIS 98 (674)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHH-HHhCCcEEEEechHHHHHHHHHHHHHHh--hcCCeEEEE
Confidence 3577788888899999999999999999999765443322 1224455444565433333222222111 111122111
Q ss_pred hhcccCCC---ccccccccChhHHHHHHHHh-hcCCCCcEEEEcCCCcc
Q psy9590 216 IRFEDCTS---SETLIKYMTDGMLLRECLVD-LDLNNYSVIMLDEAHER 260 (350)
Q Consensus 216 ~~~~~~~~---~~~~i~~lS~G~~qr~~ia~-all~~~~viIlDEpher 260 (350)
..-.+... ....+.-+|.+....+.... ..+.+.+++|+||.|..
T Consensus 99 ~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l 147 (674)
T PRK01172 99 IGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII 147 (674)
T ss_pred eCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc
Confidence 10000000 11234455555433332222 34788999999999976
No 500
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.37 E-value=0.0011 Score=61.53 Aligned_cols=40 Identities=35% Similarity=0.493 Sum_probs=28.2
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR 189 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~ 189 (350)
.+.+++|.|++||||||+++.++.....+....+.+.+|.
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~ 118 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPV 118 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCc
Confidence 4668999999999999999988776533222334444443
Done!