Query psy9590
Match_columns 350
No_of_seqs 446 out of 3781
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 23:34:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 99.9 6.6E-28 2.2E-32 252.4 14.3 224 126-349 84-421 (773)
2 3tif_A Uncharacterized ABC tra 99.9 1.8E-24 6.2E-29 195.9 9.8 164 142-328 22-226 (235)
3 3fvq_A Fe(3+) IONS import ATP- 99.9 1.2E-24 4.2E-29 207.6 7.9 166 141-328 20-220 (359)
4 3tui_C Methionine import ATP-b 99.9 3.1E-24 1.1E-28 205.0 9.3 165 141-327 44-244 (366)
5 3rlf_A Maltose/maltodextrin im 99.9 1.9E-24 6.5E-29 207.7 7.6 166 141-328 19-215 (381)
6 3gfo_A Cobalt import ATP-bindi 99.9 6.2E-24 2.1E-28 196.5 10.4 164 141-327 24-224 (275)
7 4g1u_C Hemin import ATP-bindin 99.9 5.3E-24 1.8E-28 196.2 8.5 164 141-327 27-228 (266)
8 1z47_A CYSA, putative ABC-tran 99.9 6.7E-24 2.3E-28 202.5 9.4 165 141-327 31-226 (355)
9 2yyz_A Sugar ABC transporter, 99.9 7.6E-24 2.6E-28 202.5 9.6 165 142-328 20-215 (359)
10 2it1_A 362AA long hypothetical 99.9 7.7E-24 2.7E-28 202.7 9.5 164 142-327 20-214 (362)
11 3d31_A Sulfate/molybdate ABC t 99.9 7.1E-24 2.4E-28 202.0 8.8 164 142-327 17-208 (348)
12 2pcj_A ABC transporter, lipopr 99.9 1.3E-23 4.3E-28 189.0 9.6 162 142-326 21-218 (224)
13 1g6h_A High-affinity branched- 99.9 1.2E-23 4.1E-28 193.0 9.5 165 141-327 23-233 (257)
14 2olj_A Amino acid ABC transpor 99.9 1.2E-23 3.9E-28 193.5 9.1 164 142-327 41-239 (263)
15 1vpl_A ABC transporter, ATP-bi 99.9 1.7E-23 5.7E-28 191.8 9.5 165 141-327 31-226 (256)
16 1b0u_A Histidine permease; ABC 99.9 1.4E-23 4.6E-28 193.1 8.0 163 142-327 23-233 (262)
17 1v43_A Sugar-binding transport 99.9 1E-23 3.6E-28 202.5 7.0 164 142-327 28-222 (372)
18 1ji0_A ABC transporter; ATP bi 99.9 1.4E-23 4.6E-28 190.7 7.3 164 142-327 23-219 (240)
19 1oxx_K GLCV, glucose, ABC tran 99.9 2.2E-23 7.6E-28 199.2 8.9 165 141-327 21-221 (353)
20 2yz2_A Putative ABC transporte 99.9 4.4E-23 1.5E-27 190.2 10.3 164 142-327 24-218 (266)
21 2nq2_C Hypothetical ABC transp 99.9 1.9E-23 6.5E-28 191.2 7.6 161 142-324 22-206 (253)
22 1g29_1 MALK, maltose transport 99.9 3E-23 1E-27 199.5 9.0 164 142-327 20-220 (372)
23 2onk_A Molybdate/tungstate ABC 99.9 2E-23 6.7E-28 189.6 6.7 163 142-327 16-207 (240)
24 2pjz_A Hypothetical protein ST 99.9 1.3E-22 4.3E-27 186.6 10.3 162 142-327 22-206 (263)
25 2ihy_A ABC transporter, ATP-bi 99.9 7.2E-23 2.5E-27 189.9 7.8 164 142-327 38-243 (279)
26 2ff7_A Alpha-hemolysin translo 99.9 8.3E-23 2.9E-27 186.3 8.1 162 142-327 26-223 (247)
27 2qi9_C Vitamin B12 import ATP- 99.9 1.3E-22 4.4E-27 185.1 6.7 163 141-327 16-213 (249)
28 1sgw_A Putative ABC transporte 99.9 1.3E-22 4.5E-27 181.0 6.3 162 141-325 25-210 (214)
29 3nh6_A ATP-binding cassette SU 99.9 8.7E-23 3E-27 191.4 5.1 163 142-328 71-269 (306)
30 2ixe_A Antigen peptide transpo 99.9 4.1E-22 1.4E-26 184.1 9.5 162 142-327 36-236 (271)
31 2d2e_A SUFC protein; ABC-ATPas 99.9 1.3E-22 4.6E-27 185.2 6.2 164 142-327 20-224 (250)
32 2zu0_C Probable ATP-dependent 99.9 3.1E-22 1E-26 184.6 8.6 165 142-327 37-245 (267)
33 2cbz_A Multidrug resistance-as 99.9 2.2E-22 7.4E-27 182.4 7.5 163 142-327 22-208 (237)
34 1mv5_A LMRA, multidrug resista 99.9 2.2E-22 7.4E-27 183.1 6.5 162 142-326 19-216 (243)
35 2ghi_A Transport protein; mult 99.9 4.4E-22 1.5E-26 182.8 7.3 161 142-327 37-233 (260)
36 2pze_A Cystic fibrosis transme 99.9 1.1E-21 3.9E-26 176.8 9.5 161 143-327 26-209 (229)
37 3gd7_A Fusion complex of cysti 99.8 3.9E-22 1.3E-26 192.7 4.6 162 141-328 37-234 (390)
38 2bbs_A Cystic fibrosis transme 99.8 5.4E-21 1.9E-25 178.1 7.1 162 141-327 54-238 (290)
39 3b5x_A Lipid A export ATP-bind 99.8 7.8E-21 2.7E-25 193.4 7.3 165 140-327 358-558 (582)
40 3ozx_A RNAse L inhibitor; ATP 99.8 2.3E-20 7.8E-25 187.7 7.4 155 147-323 290-462 (538)
41 3qf4_B Uncharacterized ABC tra 99.8 1.8E-20 6.2E-25 191.2 6.3 163 141-327 371-569 (598)
42 4a82_A Cystic fibrosis transme 99.8 2.8E-20 9.4E-25 189.2 7.3 164 141-328 357-556 (578)
43 3b60_A Lipid A export ATP-bind 99.8 2.8E-20 9.5E-25 189.3 7.1 162 142-327 360-558 (582)
44 3qf4_A ABC transporter, ATP-bi 99.8 2E-20 6.8E-25 190.5 6.0 164 141-328 359-558 (587)
45 2yl4_A ATP-binding cassette SU 99.8 4.4E-20 1.5E-24 188.3 7.4 164 141-328 360-562 (595)
46 1yqt_A RNAse L inhibitor; ATP- 99.8 8.1E-20 2.8E-24 184.0 7.5 154 147-322 308-477 (538)
47 3bk7_A ABC transporter ATP-bin 99.8 9.9E-20 3.4E-24 185.4 7.6 154 147-322 378-547 (607)
48 3j16_B RLI1P; ribosome recycli 99.8 4E-19 1.4E-23 180.8 9.1 157 144-322 366-543 (608)
49 3j16_B RLI1P; ribosome recycli 99.8 3.1E-19 1E-23 181.6 7.3 156 147-324 99-298 (608)
50 3ozx_A RNAse L inhibitor; ATP 99.8 3.3E-19 1.1E-23 179.2 5.8 156 147-324 21-214 (538)
51 1yqt_A RNAse L inhibitor; ATP- 99.8 7.5E-19 2.5E-23 176.9 8.2 155 143-323 40-234 (538)
52 3bk7_A ABC transporter ATP-bin 99.7 1.6E-18 5.3E-23 176.6 9.1 156 142-323 109-304 (607)
53 2iw3_A Elongation factor 3A; a 99.7 8.8E-19 3E-23 185.1 6.1 80 226-326 897-977 (986)
54 2xau_A PRE-mRNA-splicing facto 99.7 3.6E-18 1.2E-22 178.7 8.5 116 1-116 309-431 (773)
55 4f4c_A Multidrug resistance pr 99.7 6.7E-18 2.3E-22 185.7 10.0 165 141-328 434-633 (1321)
56 3g5u_A MCG1178, multidrug resi 99.7 3.6E-18 1.2E-22 187.5 6.8 166 140-328 405-605 (1284)
57 3g5u_A MCG1178, multidrug resi 99.7 4.1E-18 1.4E-22 187.0 4.7 166 140-328 1048-1250(1284)
58 4f4c_A Multidrug resistance pr 99.7 1.1E-17 3.8E-22 184.0 8.2 165 140-328 1094-1296(1321)
59 2iw3_A Elongation factor 3A; a 99.7 1.3E-17 4.4E-22 176.3 8.0 165 140-326 450-624 (986)
60 3ux8_A Excinuclease ABC, A sub 99.7 3E-17 1E-21 169.5 9.1 80 225-326 197-288 (670)
61 3llm_A ATP-dependent RNA helic 99.7 2.4E-16 8.2E-21 142.0 9.6 143 127-271 52-199 (235)
62 3ux8_A Excinuclease ABC, A sub 99.6 1.2E-16 4.1E-21 165.1 7.8 81 225-327 538-631 (670)
63 3b85_A Phosphate starvation-in 99.6 4.2E-17 1.4E-21 144.7 -2.3 151 143-328 14-175 (208)
64 2npi_A Protein CLP1; CLP1-PCF1 99.6 7E-17 2.4E-21 159.4 -2.6 157 143-326 130-329 (460)
65 4aby_A DNA repair protein RECN 99.5 6.2E-15 2.1E-19 143.4 7.4 76 231-328 296-380 (415)
66 2vf7_A UVRA2, excinuclease ABC 99.5 5.1E-15 1.7E-19 155.0 4.8 80 225-326 725-817 (842)
67 4gp7_A Metallophosphoesterase; 99.5 4.9E-15 1.7E-19 127.0 3.7 28 230-257 83-110 (171)
68 3pih_A Uvrabc system protein A 99.5 4.2E-14 1.4E-18 149.2 8.7 80 226-327 801-893 (916)
69 1ye8_A Protein THEP1, hypothet 99.5 4.3E-15 1.5E-19 128.5 0.7 96 153-257 2-110 (178)
70 2r6f_A Excinuclease ABC subuni 99.5 3.3E-14 1.1E-18 149.5 6.5 80 225-326 840-932 (972)
71 2ygr_A Uvrabc system protein A 99.5 4.7E-14 1.6E-18 148.8 7.5 80 225-326 858-950 (993)
72 3qf7_A RAD50; ABC-ATPase, ATPa 99.4 9.5E-14 3.2E-18 133.3 7.6 79 226-326 275-363 (365)
73 3o8b_A HCV NS3 protease/helica 99.4 5.2E-14 1.8E-18 143.8 5.0 206 127-347 208-491 (666)
74 1e69_A Chromosome segregation 99.4 2.9E-13 1E-17 127.6 9.3 87 226-334 215-310 (322)
75 3aez_A Pantothenate kinase; tr 99.3 2E-13 6.8E-18 128.2 1.9 111 148-260 87-206 (312)
76 2z83_A Helicase/nucleoside tri 99.3 1.8E-12 6.1E-17 128.1 7.2 192 145-347 15-287 (459)
77 2pt7_A CAG-ALFA; ATPase, prote 99.3 4.3E-13 1.5E-17 127.0 2.1 131 140-324 160-291 (330)
78 2va8_A SSO2462, SKI2-type heli 99.3 2.6E-12 9E-17 133.4 7.6 124 137-261 31-158 (715)
79 2jlq_A Serine protease subunit 99.2 1.4E-11 4.8E-16 121.4 9.7 190 147-347 15-285 (451)
80 1tf7_A KAIC; homohexamer, hexa 99.2 7.9E-12 2.7E-16 125.5 7.9 148 147-324 277-444 (525)
81 1tq4_A IIGP1, interferon-induc 99.2 7.1E-14 2.4E-18 135.8 -7.7 113 140-257 38-193 (413)
82 3qkt_A DNA double-strand break 99.2 9.1E-11 3.1E-15 111.3 12.9 74 226-321 244-327 (339)
83 2p6r_A Afuhel308 helicase; pro 99.2 1.5E-11 5.3E-16 127.4 5.1 130 138-269 27-164 (702)
84 2whx_A Serine protease/ntpase/ 99.1 2.3E-11 8E-16 124.2 5.7 204 131-347 169-452 (618)
85 1cr0_A DNA primase/helicase; R 99.1 4.6E-11 1.6E-15 110.9 7.2 117 139-258 23-157 (296)
86 2ehv_A Hypothetical protein PH 99.1 5.4E-11 1.9E-15 106.8 7.0 39 147-186 26-66 (251)
87 3b9q_A Chloroplast SRP recepto 99.1 5.3E-11 1.8E-15 111.2 7.0 105 148-257 97-229 (302)
88 2v9p_A Replication protein E1; 99.1 7.1E-12 2.4E-16 117.0 0.7 104 139-253 114-220 (305)
89 4a74_A DNA repair and recombin 99.1 9.8E-11 3.3E-15 103.8 6.5 36 141-176 14-50 (231)
90 2w0m_A SSO2452; RECA, SSPF, un 99.1 1E-10 3.5E-15 103.6 6.5 166 141-323 12-192 (235)
91 1z6g_A Guanylate kinase; struc 99.1 5.8E-12 2E-16 112.1 -2.9 110 141-257 13-154 (218)
92 2og2_A Putative signal recogni 99.0 2.1E-10 7.2E-15 109.4 7.1 105 148-257 154-286 (359)
93 2zj8_A DNA helicase, putative 99.0 1.8E-10 6.3E-15 119.7 7.2 133 136-269 23-164 (720)
94 3thx_A DNA mismatch repair pro 99.0 7.8E-11 2.7E-15 124.9 4.1 142 143-326 654-803 (934)
95 2va8_A SSO2462, SKI2-type heli 99.0 1.1E-10 3.8E-15 121.1 4.4 110 1-117 258-394 (715)
96 2jeo_A Uridine-cytidine kinase 99.0 8.5E-11 2.9E-15 106.2 2.6 117 139-257 13-142 (245)
97 2eyu_A Twitching motility prot 99.0 1.6E-10 5.6E-15 105.6 4.2 92 140-257 16-107 (261)
98 2v6i_A RNA helicase; membrane, 99.0 5E-10 1.7E-14 109.6 7.2 187 150-347 1-265 (431)
99 3sop_A Neuronal-specific septi 99.0 2.2E-11 7.7E-16 112.0 -2.7 100 153-258 4-123 (270)
100 1f2t_B RAD50 ABC-ATPase; DNA d 99.0 5.7E-10 2E-14 93.2 6.1 80 225-326 52-143 (148)
101 3thx_B DNA mismatch repair pro 99.0 7.3E-11 2.5E-15 124.7 0.2 95 144-257 666-761 (918)
102 1ewq_A DNA mismatch repair pro 99.0 1.1E-10 3.9E-15 121.4 1.6 86 151-257 576-664 (765)
103 1yks_A Genome polyprotein [con 98.9 1.1E-09 3.7E-14 107.5 6.4 190 147-346 4-272 (440)
104 3rc3_A ATP-dependent RNA helic 98.9 1.5E-09 5.3E-14 111.6 5.8 100 3-117 328-430 (677)
105 2o8b_B DNA mismatch repair pro 98.8 5.9E-10 2E-14 119.4 2.1 138 151-326 789-930 (1022)
106 1pzn_A RAD51, DNA repair and r 98.8 2.2E-09 7.6E-14 102.1 5.5 108 140-257 119-240 (349)
107 2i3b_A HCR-ntpase, human cance 98.8 4.6E-11 1.6E-15 104.0 -5.8 100 151-257 1-114 (189)
108 3jvv_A Twitching mobility prot 98.8 3.7E-09 1.3E-13 100.9 6.5 86 147-257 119-205 (356)
109 2wv9_A Flavivirin protease NS2 98.8 2.3E-09 7.7E-14 110.4 5.3 117 146-271 236-355 (673)
110 1tf7_A KAIC; homohexamer, hexa 98.8 3.3E-09 1.1E-13 106.3 6.0 48 139-187 26-76 (525)
111 2p6r_A Afuhel308 helicase; pro 98.8 2E-09 6.9E-14 111.5 4.0 106 1-117 248-374 (702)
112 3eaq_A Heat resistant RNA depe 98.8 3.5E-09 1.2E-13 93.6 4.7 73 1-82 37-109 (212)
113 1nlf_A Regulatory protein REPA 98.8 1.1E-08 3.9E-13 93.9 8.0 105 147-257 26-142 (279)
114 2cvh_A DNA repair and recombin 98.7 3.7E-08 1.3E-12 86.4 10.2 103 140-258 8-115 (220)
115 3i32_A Heat resistant RNA depe 98.7 3.8E-09 1.3E-13 98.5 3.8 73 1-82 34-106 (300)
116 1wb9_A DNA mismatch repair pro 98.7 6.8E-10 2.3E-14 116.2 -1.6 27 149-175 605-631 (800)
117 2obl_A ESCN; ATPase, hydrolase 98.7 3.6E-09 1.2E-13 100.6 2.6 45 139-185 60-104 (347)
118 3rc3_A ATP-dependent RNA helic 98.7 1.4E-08 4.9E-13 104.4 7.0 46 298-348 373-418 (677)
119 2dpy_A FLII, flagellum-specifi 98.7 3.4E-09 1.2E-13 103.8 1.8 46 139-186 146-191 (438)
120 1rj9_A FTSY, signal recognitio 98.7 4.6E-08 1.6E-12 91.3 9.4 106 150-256 101-230 (304)
121 3o8b_A HCV NS3 protease/helica 98.7 1.2E-08 4E-13 104.4 5.4 97 1-115 402-502 (666)
122 2z83_A Helicase/nucleoside tri 98.7 1.5E-08 5.3E-13 99.8 5.6 101 1-116 196-299 (459)
123 1vma_A Cell division protein F 98.6 3.5E-08 1.2E-12 92.1 7.0 90 149-258 102-196 (306)
124 2gza_A Type IV secretion syste 98.6 7.3E-08 2.5E-12 92.0 8.6 98 141-258 165-262 (361)
125 2zj8_A DNA helicase, putative 98.6 1.4E-08 4.7E-13 105.5 3.5 106 1-116 243-372 (720)
126 2jlq_A Serine protease subunit 98.6 3.8E-08 1.3E-12 96.7 6.1 101 1-116 194-297 (451)
127 3asz_A Uridine kinase; cytidin 98.6 1E-09 3.5E-14 96.3 -5.4 108 148-257 3-120 (211)
128 2ewv_A Twitching motility prot 98.5 5.6E-08 1.9E-12 93.2 5.7 84 148-257 133-218 (372)
129 1htw_A HI0065; nucleotide-bind 98.5 4.2E-08 1.4E-12 82.7 4.0 45 139-185 21-65 (158)
130 1lw7_A Transcriptional regulat 98.5 6.4E-09 2.2E-13 99.5 -1.5 114 142-257 159-286 (365)
131 3pey_A ATP-dependent RNA helic 98.5 1.3E-06 4.4E-11 82.8 12.8 123 138-261 29-158 (395)
132 1n0w_A DNA repair protein RAD5 98.5 4.6E-07 1.6E-11 80.6 8.9 34 141-174 13-47 (243)
133 3pih_A Uvrabc system protein A 98.5 8.3E-08 2.8E-12 101.4 4.5 80 225-326 459-550 (916)
134 3fht_A ATP-dependent RNA helic 98.4 1E-06 3.6E-11 84.2 11.6 123 138-260 49-180 (412)
135 1zp6_A Hypothetical protein AT 98.4 1.1E-07 3.7E-12 81.8 3.9 103 147-252 5-131 (191)
136 2f1r_A Molybdopterin-guanine d 98.4 7.2E-09 2.4E-13 88.7 -4.2 98 152-251 3-124 (171)
137 4ad8_A DNA repair protein RECN 98.4 9.1E-08 3.1E-12 95.7 2.9 77 226-324 392-474 (517)
138 3eiq_A Eukaryotic initiation f 98.4 1.5E-06 5.2E-11 83.2 10.7 123 136-259 62-194 (414)
139 2o5v_A DNA replication and rep 98.4 2E-07 7E-12 88.8 4.4 77 225-326 259-346 (359)
140 2v6i_A RNA helicase; membrane, 98.3 2.2E-07 7.4E-12 90.8 4.3 101 1-116 177-277 (431)
141 3kta_B Chromosome segregation 98.3 3.4E-07 1.2E-11 78.3 4.9 82 226-329 60-150 (173)
142 2whx_A Serine protease/ntpase/ 98.3 2.3E-07 8E-12 94.6 4.3 102 1-116 361-464 (618)
143 1yks_A Genome polyprotein [con 98.3 2.2E-07 7.5E-12 91.0 3.8 101 1-115 183-284 (440)
144 2kjq_A DNAA-related protein; s 98.3 4.8E-07 1.6E-11 75.3 5.3 27 150-176 35-61 (149)
145 2rcn_A Probable GTPase ENGC; Y 98.3 1.3E-07 4.6E-12 89.9 1.8 43 142-185 207-249 (358)
146 2r6f_A Excinuclease ABC subuni 98.3 3.3E-07 1.1E-11 96.7 4.8 81 224-326 498-590 (972)
147 1odf_A YGR205W, hypothetical 3 98.3 1.2E-07 4.2E-12 87.8 0.9 109 149-258 29-162 (290)
148 3ec2_A DNA replication protein 98.3 5.5E-07 1.9E-11 76.8 4.9 28 148-175 35-62 (180)
149 2ygr_A Uvrabc system protein A 98.2 4.5E-07 1.5E-11 96.0 4.0 81 224-326 515-607 (993)
150 1znw_A Guanylate kinase, GMP k 98.2 5.2E-07 1.8E-11 79.0 3.8 31 146-176 15-45 (207)
151 2vf7_A UVRA2, excinuclease ABC 98.2 7.3E-07 2.5E-11 93.5 5.0 81 224-326 373-465 (842)
152 2wv9_A Flavivirin protease NS2 98.2 8.3E-07 2.8E-11 91.4 4.6 102 1-116 416-519 (673)
153 2qnr_A Septin-2, protein NEDD5 98.2 4.2E-08 1.5E-12 91.4 -4.6 31 226-260 109-139 (301)
154 3e70_C DPA, signal recognition 98.2 1.6E-06 5.4E-11 81.6 6.0 37 149-186 127-163 (328)
155 3fmp_B ATP-dependent RNA helic 98.1 5E-06 1.7E-10 81.8 8.2 123 138-260 116-247 (479)
156 1xti_A Probable ATP-dependent 98.1 1.5E-05 5.2E-10 75.5 11.3 125 137-261 31-165 (391)
157 1ls1_A Signal recognition part 98.1 5.5E-06 1.9E-10 76.8 7.9 91 150-257 97-189 (295)
158 3auy_A DNA double-strand break 98.1 2.8E-06 9.7E-11 81.2 6.0 74 226-321 276-359 (371)
159 2x8a_A Nuclear valosin-contain 98.1 9.4E-08 3.2E-12 87.8 -4.5 110 144-260 39-165 (274)
160 1s96_A Guanylate kinase, GMP k 98.1 1.1E-06 3.8E-11 77.9 2.6 40 146-185 11-51 (219)
161 3tr0_A Guanylate kinase, GMP k 98.1 1.9E-06 6.4E-11 74.7 4.0 29 147-175 3-31 (205)
162 3fho_A ATP-dependent RNA helic 98.1 8.7E-06 3E-10 81.0 9.2 120 143-262 148-273 (508)
163 2yhs_A FTSY, cell division pro 98.1 7.3E-06 2.5E-10 80.8 8.3 38 148-186 290-327 (503)
164 1nij_A Hypothetical protein YJ 98.0 6E-07 2E-11 84.1 0.0 24 152-175 5-28 (318)
165 2v1x_A ATP-dependent DNA helic 98.0 6E-05 2E-09 76.4 14.6 116 139-261 47-178 (591)
166 3lnc_A Guanylate kinase, GMP k 98.0 1.3E-06 4.5E-11 77.6 1.3 37 139-175 15-52 (231)
167 1pui_A ENGB, probable GTP-bind 98.0 1.5E-06 5E-11 75.5 1.1 32 226-257 145-177 (210)
168 2qag_C Septin-7; cell cycle, c 98.0 2.6E-07 9E-12 89.8 -4.3 30 230-259 118-150 (418)
169 2oap_1 GSPE-2, type II secreti 98.0 8.6E-06 2.9E-10 81.1 6.5 48 140-188 249-296 (511)
170 3l9o_A ATP-dependent RNA helic 97.9 6.7E-06 2.3E-10 89.1 6.0 117 135-258 183-300 (1108)
171 1fuk_A Eukaryotic initiation f 97.9 8.2E-06 2.8E-10 68.6 5.4 72 1-81 36-107 (165)
172 1sq5_A Pantothenate kinase; P- 97.9 7.5E-06 2.6E-10 76.2 5.6 37 149-185 78-115 (308)
173 3k1j_A LON protease, ATP-depen 97.9 6.1E-06 2.1E-10 84.0 5.0 47 139-185 48-94 (604)
174 2px0_A Flagellar biosynthesis 97.9 1.7E-05 5.9E-10 73.5 7.5 28 149-176 103-130 (296)
175 3eiq_A Eukaryotic initiation f 97.9 2.4E-06 8.2E-11 81.8 1.7 72 1-81 286-357 (414)
176 1lvg_A Guanylate kinase, GMP k 97.9 4.4E-06 1.5E-10 72.6 3.1 27 149-175 2-28 (198)
177 1w1w_A Structural maintenance 97.9 8.9E-06 3E-10 79.2 5.4 84 226-331 329-424 (430)
178 2qm8_A GTPase/ATPase; G protei 97.9 5E-06 1.7E-10 78.5 3.4 46 139-185 43-88 (337)
179 3pey_A ATP-dependent RNA helic 97.8 1.2E-05 4E-10 76.2 5.1 73 1-82 249-321 (395)
180 1udx_A The GTP-binding protein 97.8 1.4E-06 4.7E-11 84.6 -1.6 104 144-254 150-276 (416)
181 1qde_A EIF4A, translation init 97.8 8.4E-05 2.9E-09 65.0 10.0 123 137-259 37-166 (224)
182 3a00_A Guanylate kinase, GMP k 97.8 8.3E-06 2.8E-10 70.0 3.4 26 151-176 1-26 (186)
183 3c8u_A Fructokinase; YP_612366 97.8 7.9E-06 2.7E-10 71.4 3.2 110 148-259 19-141 (208)
184 2j0s_A ATP-dependent RNA helic 97.8 0.00017 5.7E-09 68.9 12.2 121 138-259 61-190 (410)
185 3lda_A DNA repair protein RAD5 97.8 4.1E-05 1.4E-09 73.9 7.6 34 140-173 166-200 (400)
186 3szr_A Interferon-induced GTP- 97.8 2E-06 7E-11 87.5 -1.7 33 153-185 47-79 (608)
187 3dkp_A Probable ATP-dependent 97.8 0.00013 4.6E-09 64.8 10.5 123 137-260 52-187 (245)
188 1vec_A ATP-dependent RNA helic 97.7 0.00011 3.6E-09 63.5 9.2 122 138-259 27-157 (206)
189 3euj_A Chromosome partition pr 97.7 8.7E-06 3E-10 80.3 2.4 42 143-186 22-63 (483)
190 2qag_B Septin-6, protein NEDD5 97.7 1.4E-05 4.8E-10 77.6 3.6 35 141-175 30-66 (427)
191 1kgd_A CASK, peripheral plasma 97.7 1.9E-05 6.6E-10 67.3 4.0 27 150-176 4-30 (180)
192 3l9o_A ATP-dependent RNA helic 97.7 8.2E-06 2.8E-10 88.4 2.0 76 31-116 507-582 (1108)
193 2i4i_A ATP-dependent RNA helic 97.7 1.7E-05 5.9E-10 75.9 3.9 72 1-81 282-353 (417)
194 1p9r_A General secretion pathw 97.7 2.9E-05 9.9E-10 75.4 5.5 43 140-185 158-200 (418)
195 3ber_A Probable ATP-dependent 97.7 9E-05 3.1E-09 66.5 8.4 128 137-265 66-202 (249)
196 1hv8_A Putative ATP-dependent 97.7 1.8E-05 6.1E-10 74.1 3.8 72 1-81 244-315 (367)
197 2j41_A Guanylate kinase; GMP, 97.7 1.9E-05 6.6E-10 68.2 3.7 29 147-175 2-30 (207)
198 4a4z_A Antiviral helicase SKI2 97.7 5.8E-05 2E-09 81.0 7.9 116 137-259 40-158 (997)
199 1u0l_A Probable GTPase ENGC; p 97.7 2.3E-05 8E-10 72.7 4.3 39 146-185 164-202 (301)
200 3i5x_A ATP-dependent RNA helic 97.7 0.00015 5.3E-09 72.5 10.6 122 138-259 96-237 (563)
201 3fht_A ATP-dependent RNA helic 97.7 3E-05 1E-09 73.9 5.1 74 1-83 272-345 (412)
202 3iuy_A Probable ATP-dependent 97.7 0.00012 4.2E-09 64.3 8.5 120 138-259 44-178 (228)
203 1q0u_A Bstdead; DEAD protein, 97.7 0.0001 3.5E-09 64.4 8.0 122 138-259 28-161 (219)
204 2ykg_A Probable ATP-dependent 97.7 1.7E-05 5.8E-10 81.6 3.0 76 1-81 404-488 (696)
205 2hjv_A ATP-dependent RNA helic 97.6 4.3E-05 1.5E-09 64.0 5.0 72 1-81 41-112 (163)
206 2rb4_A ATP-dependent RNA helic 97.6 4.2E-05 1.4E-09 64.8 4.9 73 1-82 40-112 (175)
207 2db3_A ATP-dependent RNA helic 97.6 0.00017 5.8E-09 70.1 9.9 120 139-259 81-214 (434)
208 2r6a_A DNAB helicase, replicat 97.6 9.7E-05 3.3E-09 72.4 8.1 38 138-175 190-227 (454)
209 1sxj_E Activator 1 40 kDa subu 97.6 0.00011 3.7E-09 69.0 7.5 33 153-185 38-70 (354)
210 2gxq_A Heat resistant RNA depe 97.6 0.00032 1.1E-08 60.3 9.9 123 137-259 24-155 (207)
211 1s2m_A Putative ATP-dependent 97.6 5.6E-05 1.9E-09 71.9 5.5 72 1-81 264-335 (400)
212 2v1x_A ATP-dependent DNA helic 97.6 5.3E-05 1.8E-09 76.8 5.4 74 1-83 273-346 (591)
213 2yv5_A YJEQ protein; hydrolase 97.6 4.2E-05 1.4E-09 71.0 4.3 39 145-185 159-197 (302)
214 2oxc_A Probable ATP-dependent 97.6 0.00018 6.2E-09 63.4 8.2 123 137-259 47-177 (230)
215 1t6n_A Probable ATP-dependent 97.6 0.00019 6.6E-09 62.6 8.1 123 138-260 38-170 (220)
216 3tqc_A Pantothenate kinase; bi 97.6 0.0001 3.5E-09 68.9 6.6 44 140-183 75-125 (321)
217 2p6n_A ATP-dependent RNA helic 97.5 4.3E-05 1.5E-09 66.0 3.7 72 1-81 60-131 (191)
218 4eun_A Thermoresistant glucoki 97.5 4.3E-05 1.5E-09 66.1 3.7 28 148-175 26-53 (200)
219 3b6e_A Interferon-induced heli 97.5 9.7E-05 3.3E-09 63.9 6.0 125 134-260 31-174 (216)
220 1oyw_A RECQ helicase, ATP-depe 97.5 0.00017 5.8E-09 72.0 8.4 118 138-262 27-153 (523)
221 1s2m_A Putative ATP-dependent 97.5 0.00024 8.3E-09 67.5 9.1 122 137-259 44-174 (400)
222 2bdt_A BH3686; alpha-beta prot 97.5 5.5E-05 1.9E-09 64.6 4.1 31 151-185 2-32 (189)
223 1hv8_A Putative ATP-dependent 97.5 0.00019 6.4E-09 67.0 8.0 123 138-260 30-159 (367)
224 3tau_A Guanylate kinase, GMP k 97.5 5.3E-05 1.8E-09 66.1 3.9 28 149-176 6-33 (208)
225 2ykg_A Probable ATP-dependent 97.5 0.00011 3.9E-09 75.3 6.9 123 138-260 15-148 (696)
226 2z0m_A 337AA long hypothetical 97.5 0.00011 3.7E-09 67.9 6.0 118 138-259 18-140 (337)
227 3m6a_A ATP-dependent protease 97.5 0.00016 5.5E-09 72.5 7.4 35 150-185 107-141 (543)
228 2jgn_A DBX, DDX3, ATP-dependen 97.5 4E-05 1.4E-09 65.8 2.6 72 1-81 52-123 (185)
229 3i5x_A ATP-dependent RNA helic 97.5 8.3E-05 2.8E-09 74.5 5.2 76 1-82 345-420 (563)
230 1t5i_A C_terminal domain of A 97.5 8.5E-05 2.9E-09 62.9 4.5 72 1-81 37-108 (172)
231 1t9h_A YLOQ, probable GTPase E 97.5 1.6E-05 5.3E-10 74.1 -0.4 39 146-185 168-206 (307)
232 3uie_A Adenylyl-sulfate kinase 97.5 9.6E-05 3.3E-09 63.9 4.7 38 144-183 18-55 (200)
233 1gku_B Reverse gyrase, TOP-RG; 97.5 0.00013 4.4E-09 78.8 6.7 115 139-259 59-186 (1054)
234 1oyw_A RECQ helicase, ATP-depe 97.4 8E-05 2.7E-09 74.4 4.7 73 1-82 242-314 (523)
235 2j0s_A ATP-dependent RNA helic 97.4 8E-05 2.7E-09 71.2 4.5 72 1-81 282-353 (410)
236 3bor_A Human initiation factor 97.4 0.0004 1.4E-08 61.5 8.8 121 138-259 54-184 (237)
237 1wp9_A ATP-dependent RNA helic 97.4 0.00014 4.8E-09 70.1 6.2 122 135-261 8-138 (494)
238 2xgj_A ATP-dependent RNA helic 97.4 0.00018 6.3E-09 77.2 7.5 115 137-258 87-202 (1010)
239 1fnn_A CDC6P, cell division co 97.4 0.001 3.6E-08 62.7 12.1 24 153-176 46-69 (389)
240 3vaa_A Shikimate kinase, SK; s 97.4 8.7E-05 3E-09 64.1 4.1 38 140-177 14-51 (199)
241 4a4z_A Antiviral helicase SKI2 97.4 3.9E-05 1.3E-09 82.3 2.2 75 31-115 402-476 (997)
242 1qhl_A Protein (cell division 97.4 7.4E-06 2.5E-10 73.0 -2.9 33 152-185 28-60 (227)
243 3oiy_A Reverse gyrase helicase 97.4 0.00016 5.4E-09 69.5 6.1 118 137-258 22-149 (414)
244 3kl4_A SRP54, signal recogniti 97.4 0.00033 1.1E-08 68.1 8.4 92 151-259 97-190 (433)
245 2vp4_A Deoxynucleoside kinase; 97.4 5.5E-05 1.9E-09 67.1 2.5 27 148-174 17-43 (230)
246 2db3_A ATP-dependent RNA helic 97.4 0.00013 4.5E-09 70.8 5.2 73 1-82 306-378 (434)
247 3b9p_A CG5977-PA, isoform A; A 97.4 0.00033 1.1E-08 64.1 7.6 72 150-259 53-124 (297)
248 2pl3_A Probable ATP-dependent 97.4 0.00035 1.2E-08 61.7 7.4 121 137-258 48-181 (236)
249 1fuu_A Yeast initiation factor 97.4 0.00019 6.4E-09 67.9 6.0 122 138-259 45-173 (394)
250 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.6E-09 61.7 3.7 27 150-176 3-29 (173)
251 4a1f_A DNAB helicase, replicat 97.4 0.00023 7.8E-09 67.1 6.3 103 138-257 33-136 (338)
252 2fz4_A DNA repair protein RAD2 97.3 0.0007 2.4E-08 60.3 9.1 112 136-260 93-204 (237)
253 2yjt_D ATP-dependent RNA helic 96.5 2.9E-05 9.9E-10 65.5 0.0 55 28-82 54-108 (170)
254 2ce7_A Cell division protein F 97.3 0.00028 9.6E-09 69.5 6.9 69 153-259 51-119 (476)
255 3kta_A Chromosome segregation 97.3 0.00012 4.1E-09 62.0 3.7 28 148-176 24-51 (182)
256 4f92_B U5 small nuclear ribonu 97.3 0.00035 1.2E-08 78.7 8.4 119 139-258 929-1056(1724)
257 1xti_A Probable ATP-dependent 97.3 0.00021 7E-09 67.6 5.7 73 1-82 256-328 (391)
258 1zu4_A FTSY; GTPase, signal re 97.3 0.0004 1.4E-08 64.9 7.4 37 148-185 102-138 (320)
259 1fuu_A Yeast initiation factor 97.3 3.3E-05 1.1E-09 73.1 0.0 72 1-81 265-336 (394)
260 3nwj_A ATSK2; P loop, shikimat 97.3 0.00015 5.2E-09 65.4 4.4 39 139-177 33-74 (250)
261 3ney_A 55 kDa erythrocyte memb 97.3 0.00014 4.9E-09 63.2 4.0 27 150-176 18-44 (197)
262 3fmo_B ATP-dependent RNA helic 97.3 0.00071 2.4E-08 62.5 9.0 121 139-259 117-246 (300)
263 1svm_A Large T antigen; AAA+ f 97.3 0.00022 7.5E-09 68.2 5.7 43 139-185 157-199 (377)
264 2dr3_A UPF0273 protein PH0284; 97.3 0.00078 2.7E-08 59.4 8.9 30 146-175 18-47 (247)
265 3sqw_A ATP-dependent RNA helic 97.3 0.00015 5.2E-09 73.0 4.6 76 1-82 294-369 (579)
266 1knq_A Gluconate kinase; ALFA/ 97.3 0.00013 4.6E-09 61.3 3.6 27 149-175 6-32 (175)
267 1rz3_A Hypothetical protein rb 97.3 0.0001 3.5E-09 63.9 2.8 37 148-185 19-55 (201)
268 2bbw_A Adenylate kinase 4, AK4 97.3 0.00013 4.5E-09 65.2 3.4 23 150-172 26-48 (246)
269 3ly5_A ATP-dependent RNA helic 97.2 0.00032 1.1E-08 63.4 5.7 121 138-259 78-212 (262)
270 1rif_A DAR protein, DNA helica 97.2 0.00035 1.2E-08 63.6 6.0 122 137-261 114-238 (282)
271 2i4i_A ATP-dependent RNA helic 97.2 0.00065 2.2E-08 64.8 7.8 119 138-259 39-186 (417)
272 2zr9_A Protein RECA, recombina 97.2 0.00099 3.4E-08 63.0 8.6 35 141-175 49-85 (349)
273 2eyq_A TRCF, transcription-rep 97.1 0.00096 3.3E-08 72.6 9.1 61 142-203 613-675 (1151)
274 4e22_A Cytidylate kinase; P-lo 97.1 0.00024 8.1E-09 64.0 3.6 26 149-174 25-50 (252)
275 2fwr_A DNA repair protein RAD2 97.1 0.0012 4.1E-08 64.4 8.8 112 134-259 91-203 (472)
276 2z0m_A 337AA long hypothetical 97.1 0.00011 3.8E-09 67.8 1.3 68 1-81 226-293 (337)
277 3tbk_A RIG-I helicase domain; 97.1 0.00089 3.1E-08 66.1 7.9 124 138-261 6-140 (555)
278 3fmp_B ATP-dependent RNA helic 97.1 7.8E-05 2.7E-09 73.2 0.0 74 1-83 339-412 (479)
279 3fe2_A Probable ATP-dependent 97.1 0.0011 3.7E-08 58.9 7.5 122 138-259 53-187 (242)
280 1in4_A RUVB, holliday junction 97.1 0.00031 1.1E-08 65.9 4.1 35 141-175 34-75 (334)
281 1wrb_A DJVLGB; RNA helicase, D 97.0 0.0016 5.6E-08 58.0 8.4 121 138-259 47-185 (253)
282 2qby_A CDC6 homolog 1, cell di 97.0 0.00074 2.5E-08 63.4 5.7 26 150-175 44-69 (386)
283 4a2p_A RIG-I, retinoic acid in 97.0 0.0019 6.5E-08 63.9 8.9 124 138-261 9-143 (556)
284 1cke_A CK, MSSA, protein (cyti 97.0 0.0004 1.4E-08 60.8 3.5 27 150-176 4-30 (227)
285 3sqw_A ATP-dependent RNA helic 97.0 0.0027 9.1E-08 63.9 9.8 122 138-259 45-186 (579)
286 4gl2_A Interferon-induced heli 96.9 0.0004 1.4E-08 71.3 3.8 126 134-259 5-147 (699)
287 3cr8_A Sulfate adenylyltranfer 96.9 0.00028 9.7E-09 70.8 2.6 39 147-185 365-403 (552)
288 2qt1_A Nicotinamide riboside k 96.9 0.00038 1.3E-08 60.2 2.8 31 145-175 15-45 (207)
289 3bh0_A DNAB-like replicative h 96.9 0.0012 4.1E-08 61.4 6.4 103 139-257 56-160 (315)
290 3hr8_A Protein RECA; alpha and 96.9 0.0017 5.9E-08 61.5 7.4 45 140-185 48-94 (356)
291 2qor_A Guanylate kinase; phosp 96.9 0.0005 1.7E-08 59.5 3.3 29 147-175 8-36 (204)
292 2oca_A DAR protein, ATP-depend 96.9 0.00095 3.3E-08 65.8 5.6 122 137-261 114-238 (510)
293 1w1w_A Structural maintenance 96.8 0.00068 2.3E-08 65.8 3.9 30 148-177 23-52 (430)
294 3h4m_A Proteasome-activating n 96.8 0.0031 1.1E-07 57.0 8.1 27 149-175 49-75 (285)
295 2v1u_A Cell division control p 96.8 0.0057 2E-07 57.3 10.3 27 149-175 42-68 (387)
296 2p67_A LAO/AO transport system 96.8 0.00059 2E-08 64.2 3.2 45 139-184 44-88 (341)
297 1oix_A RAS-related protein RAB 96.7 0.00069 2.4E-08 57.8 3.1 23 153-175 31-53 (191)
298 2pez_A Bifunctional 3'-phospho 96.7 0.00083 2.9E-08 56.6 3.5 26 150-175 4-29 (179)
299 3cf0_A Transitional endoplasmi 96.7 0.0022 7.7E-08 59.0 6.7 28 148-175 46-73 (301)
300 2z43_A DNA repair and recombin 96.7 0.0032 1.1E-07 58.7 7.7 36 140-175 95-131 (324)
301 2o5v_A DNA replication and rep 96.7 0.00069 2.4E-08 64.3 3.0 26 147-173 23-48 (359)
302 1jjv_A Dephospho-COA kinase; P 96.7 0.00084 2.9E-08 57.9 3.2 21 153-173 4-24 (206)
303 2f9l_A RAB11B, member RAS onco 96.7 0.00091 3.1E-08 57.2 3.4 23 153-175 7-29 (199)
304 3dm5_A SRP54, signal recogniti 96.7 0.0085 2.9E-07 58.3 10.5 90 151-257 100-191 (443)
305 1v5w_A DMC1, meiotic recombina 96.7 0.0051 1.7E-07 57.8 8.7 36 140-175 110-146 (343)
306 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.001 3.5E-08 54.9 3.3 23 152-174 24-46 (149)
307 4ddu_A Reverse gyrase; topoiso 96.6 0.0021 7.1E-08 69.7 6.4 119 137-259 79-207 (1104)
308 2www_A Methylmalonic aciduria 96.6 0.00093 3.2E-08 63.1 3.2 34 151-185 74-107 (349)
309 4gl2_A Interferon-induced heli 96.6 0.00057 2E-08 70.1 1.8 77 1-80 406-490 (699)
310 1j8m_F SRP54, signal recogniti 96.6 0.0052 1.8E-07 56.6 8.0 34 151-185 98-131 (297)
311 1ixz_A ATP-dependent metallopr 96.6 0.00069 2.4E-08 60.5 2.0 106 147-260 47-173 (254)
312 3fho_A ATP-dependent RNA helic 96.6 0.00019 6.6E-09 71.2 -2.0 73 1-82 363-435 (508)
313 1sxj_C Activator 1 40 kDa subu 96.6 0.0019 6.5E-08 60.4 5.0 37 139-175 32-70 (340)
314 2xgj_A ATP-dependent RNA helic 96.6 0.00094 3.2E-08 71.7 3.2 76 31-116 409-484 (1010)
315 3cm0_A Adenylate kinase; ATP-b 96.5 0.0012 4E-08 55.8 3.1 27 149-175 2-28 (186)
316 2if2_A Dephospho-COA kinase; a 96.5 0.0012 4.1E-08 56.8 3.1 21 153-173 3-23 (204)
317 2ffh_A Protein (FFH); SRP54, s 96.5 0.0081 2.8E-07 58.2 9.2 43 150-193 97-141 (425)
318 4a2q_A RIG-I, retinoic acid in 96.5 0.0053 1.8E-07 64.2 8.3 124 138-261 250-384 (797)
319 1ni3_A YCHF GTPase, YCHF GTP-b 96.5 0.0013 4.4E-08 63.1 3.2 28 147-174 16-43 (392)
320 4eaq_A DTMP kinase, thymidylat 96.5 0.0019 6.4E-08 57.2 4.0 37 148-186 23-59 (229)
321 1iy2_A ATP-dependent metallopr 96.4 0.001 3.5E-08 60.4 2.2 106 147-260 71-197 (278)
322 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.013 4.3E-07 52.1 9.3 26 150-175 38-63 (262)
323 3t61_A Gluconokinase; PSI-biol 96.4 0.0017 5.8E-08 55.8 3.3 26 151-176 18-43 (202)
324 4a2w_A RIG-I, retinoic acid in 96.4 0.0074 2.5E-07 64.3 8.9 125 137-261 249-384 (936)
325 1m7g_A Adenylylsulfate kinase; 96.4 0.0021 7E-08 55.8 3.7 30 146-175 20-49 (211)
326 2z4s_A Chromosomal replication 96.3 0.0053 1.8E-07 59.8 6.7 25 151-175 130-154 (440)
327 2b8t_A Thymidine kinase; deoxy 96.3 0.0074 2.5E-07 53.3 7.0 27 149-175 10-36 (223)
328 2yvu_A Probable adenylyl-sulfa 96.3 0.0021 7.3E-08 54.4 3.4 35 149-184 11-45 (186)
329 1wp9_A ATP-dependent RNA helic 96.3 0.0015 5.1E-08 62.8 2.6 72 1-81 367-446 (494)
330 2dhr_A FTSH; AAA+ protein, hex 96.3 0.00065 2.2E-08 67.3 -0.0 103 154-261 67-189 (499)
331 3kb2_A SPBC2 prophage-derived 96.3 0.0026 8.8E-08 52.7 3.6 24 153-176 3-26 (173)
332 2gj8_A MNME, tRNA modification 96.2 0.002 6.9E-08 53.8 2.8 26 150-175 3-28 (172)
333 2qby_B CDC6 homolog 3, cell di 96.2 0.01 3.4E-07 55.8 8.0 25 151-175 45-69 (384)
334 2eyq_A TRCF, transcription-rep 96.2 0.0018 6.2E-08 70.5 3.0 70 1-77 818-887 (1151)
335 3e1s_A Exodeoxyribonuclease V, 96.2 0.0093 3.2E-07 60.1 7.8 53 139-192 192-244 (574)
336 3upu_A ATP-dependent DNA helic 96.2 0.0092 3.2E-07 58.3 7.6 53 141-193 34-87 (459)
337 3d8b_A Fidgetin-like protein 1 96.2 0.0089 3.1E-07 56.4 7.2 26 150-175 116-141 (357)
338 2wji_A Ferrous iron transport 96.1 0.0027 9.2E-08 52.5 3.1 23 153-175 5-27 (165)
339 1gm5_A RECG; helicase, replica 96.1 0.0079 2.7E-07 62.7 7.1 111 144-260 380-502 (780)
340 3vfd_A Spastin; ATPase, microt 96.1 0.015 5.3E-07 55.3 8.6 26 150-175 147-172 (389)
341 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0047 1.6E-07 58.3 4.8 36 140-175 11-48 (359)
342 1q3t_A Cytidylate kinase; nucl 96.1 0.0032 1.1E-07 55.7 3.5 30 147-176 12-41 (236)
343 2q6t_A DNAB replication FORK h 96.1 0.012 4E-07 57.3 7.8 37 139-175 188-224 (444)
344 3lw7_A Adenylate kinase relate 96.1 0.003 1E-07 52.1 3.2 22 153-175 3-24 (179)
345 1qhx_A CPT, protein (chloramph 96.1 0.0045 1.5E-07 51.7 4.2 26 151-176 3-28 (178)
346 2bjv_A PSP operon transcriptio 96.1 0.022 7.4E-07 50.9 9.0 35 141-175 19-53 (265)
347 1c4o_A DNA nucleotide excision 96.1 0.0054 1.8E-07 62.9 5.5 73 1-82 445-517 (664)
348 1kht_A Adenylate kinase; phosp 96.1 0.0037 1.2E-07 52.7 3.6 25 151-175 3-27 (192)
349 3qks_A DNA double-strand break 96.1 0.0033 1.1E-07 54.5 3.4 24 152-175 24-47 (203)
350 1np6_A Molybdopterin-guanine d 96.0 0.0038 1.3E-07 52.9 3.6 25 151-175 6-30 (174)
351 2rhm_A Putative kinase; P-loop 96.0 0.0033 1.1E-07 53.2 3.2 28 149-176 3-30 (193)
352 2v54_A DTMP kinase, thymidylat 96.0 0.0039 1.3E-07 53.3 3.4 27 149-175 2-28 (204)
353 1y63_A LMAJ004144AAA protein; 96.0 0.0033 1.1E-07 53.3 3.0 28 147-174 6-33 (184)
354 3uk6_A RUVB-like 2; hexameric 95.9 0.017 5.7E-07 54.2 7.8 26 151-176 70-95 (368)
355 2c95_A Adenylate kinase 1; tra 95.9 0.0061 2.1E-07 51.6 4.4 29 148-176 6-34 (196)
356 2wjg_A FEOB, ferrous iron tran 95.9 0.0043 1.5E-07 52.0 3.2 22 153-174 9-30 (188)
357 3eie_A Vacuolar protein sortin 95.9 0.017 5.9E-07 53.4 7.7 25 151-175 51-75 (322)
358 2d7d_A Uvrabc system protein B 95.9 0.0059 2E-07 62.5 4.9 73 1-82 451-523 (661)
359 2bwj_A Adenylate kinase 5; pho 95.9 0.0059 2E-07 51.8 4.0 31 146-176 7-37 (199)
360 1ex7_A Guanylate kinase; subst 95.9 0.0049 1.7E-07 52.9 3.4 23 153-175 3-25 (186)
361 2ze6_A Isopentenyl transferase 95.9 0.0052 1.8E-07 55.1 3.8 23 153-175 3-25 (253)
362 1ly1_A Polynucleotide kinase; 95.8 0.0049 1.7E-07 51.4 3.3 22 152-173 3-24 (181)
363 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.037 1.3E-06 51.3 9.7 26 150-175 44-69 (322)
364 1njg_A DNA polymerase III subu 95.8 0.0088 3E-07 51.6 5.0 35 141-175 32-69 (250)
365 3tbk_A RIG-I helicase domain; 95.8 0.0056 1.9E-07 60.3 4.2 80 1-80 395-478 (555)
366 2jaq_A Deoxyguanosine kinase; 95.8 0.0052 1.8E-07 52.3 3.5 24 153-176 2-25 (205)
367 3trf_A Shikimate kinase, SK; a 95.8 0.0064 2.2E-07 51.2 4.0 26 151-176 5-30 (185)
368 1vht_A Dephospho-COA kinase; s 95.8 0.0053 1.8E-07 53.3 3.5 24 150-173 3-26 (218)
369 2zej_A Dardarin, leucine-rich 95.8 0.004 1.4E-07 52.4 2.6 22 153-174 4-25 (184)
370 3pfi_A Holliday junction ATP-d 95.8 0.034 1.2E-06 51.4 9.2 24 152-175 56-79 (338)
371 3iij_A Coilin-interacting nucl 95.7 0.0059 2E-07 51.3 3.2 27 149-175 9-35 (180)
372 3umf_A Adenylate kinase; rossm 95.7 0.007 2.4E-07 53.2 3.7 31 147-177 25-55 (217)
373 3tlx_A Adenylate kinase 2; str 95.6 0.013 4.3E-07 52.2 5.4 32 144-175 22-53 (243)
374 2qp9_X Vacuolar protein sortin 95.6 0.02 6.7E-07 54.0 6.9 25 151-175 84-108 (355)
375 2plr_A DTMP kinase, probable t 95.6 0.0069 2.3E-07 51.9 3.4 27 150-176 3-29 (213)
376 1via_A Shikimate kinase; struc 95.6 0.0059 2E-07 51.1 2.9 24 153-176 6-29 (175)
377 1d2n_A N-ethylmaleimide-sensit 95.6 0.023 7.9E-07 51.0 7.0 25 151-175 64-88 (272)
378 1gvn_B Zeta; postsegregational 95.6 0.006 2.1E-07 55.8 3.1 26 150-175 32-57 (287)
379 1zuh_A Shikimate kinase; alpha 95.6 0.0087 3E-07 49.6 3.9 27 151-177 7-33 (168)
380 2p5t_B PEZT; postsegregational 95.6 0.0051 1.7E-07 55.1 2.6 28 148-175 29-56 (253)
381 1tev_A UMP-CMP kinase; ploop, 95.5 0.0072 2.5E-07 50.9 3.3 25 151-175 3-27 (196)
382 1ega_A Protein (GTP-binding pr 95.5 0.0053 1.8E-07 56.6 2.6 24 151-174 8-31 (301)
383 1zd8_A GTP:AMP phosphotransfer 95.5 0.0082 2.8E-07 52.5 3.7 28 149-176 5-32 (227)
384 1gtv_A TMK, thymidylate kinase 95.5 0.0029 1E-07 54.5 0.7 23 153-175 2-24 (214)
385 1ojl_A Transcriptional regulat 95.5 0.025 8.6E-07 52.1 7.1 36 140-175 14-49 (304)
386 1nn5_A Similar to deoxythymidy 95.5 0.0074 2.5E-07 51.9 3.2 27 149-175 7-33 (215)
387 1w36_D RECD, exodeoxyribonucle 95.5 0.02 7E-07 58.0 6.9 52 145-196 158-212 (608)
388 2wwf_A Thymidilate kinase, put 95.5 0.0069 2.4E-07 52.0 3.0 27 149-175 8-34 (212)
389 2vli_A Antibiotic resistance p 95.5 0.0077 2.6E-07 50.4 3.2 27 150-176 4-30 (183)
390 4ag6_A VIRB4 ATPase, type IV s 95.5 0.0083 2.8E-07 57.2 3.7 26 150-175 34-59 (392)
391 2z0h_A DTMP kinase, thymidylat 95.4 0.0081 2.8E-07 50.9 3.3 23 153-175 2-24 (197)
392 1xjc_A MOBB protein homolog; s 95.4 0.0087 3E-07 50.5 3.4 24 152-175 5-28 (169)
393 1nks_A Adenylate kinase; therm 95.4 0.008 2.7E-07 50.6 2.9 23 153-175 3-25 (194)
394 1aky_A Adenylate kinase; ATP:A 95.3 0.011 3.9E-07 51.3 4.0 27 150-176 3-29 (220)
395 3lxx_A GTPase IMAP family memb 95.3 0.0084 2.9E-07 52.9 3.1 24 153-176 31-54 (239)
396 1jbk_A CLPB protein; beta barr 95.3 0.021 7.2E-07 47.3 5.4 34 142-175 32-67 (195)
397 2w58_A DNAI, primosome compone 95.3 0.019 6.3E-07 49.0 5.1 24 152-175 55-78 (202)
398 2cdn_A Adenylate kinase; phosp 95.3 0.013 4.4E-07 50.1 4.1 26 151-176 20-45 (201)
399 3fb4_A Adenylate kinase; psych 95.3 0.011 3.8E-07 51.0 3.7 24 153-176 2-25 (216)
400 3r20_A Cytidylate kinase; stru 95.3 0.012 4.1E-07 52.3 3.9 27 150-176 8-34 (233)
401 3ice_A Transcription terminati 95.3 0.009 3.1E-07 57.1 3.1 33 143-175 166-198 (422)
402 1mky_A Probable GTP-binding pr 95.2 0.017 5.7E-07 56.1 5.1 23 153-175 182-204 (439)
403 3dl0_A Adenylate kinase; phosp 95.2 0.013 4.5E-07 50.6 3.9 24 153-176 2-25 (216)
404 3ake_A Cytidylate kinase; CMP 95.2 0.013 4.4E-07 50.1 3.7 24 153-176 4-27 (208)
405 4fcw_A Chaperone protein CLPB; 95.2 0.014 4.7E-07 53.3 4.1 24 152-175 48-71 (311)
406 1uf9_A TT1252 protein; P-loop, 95.2 0.0099 3.4E-07 50.6 3.0 24 151-174 8-31 (203)
407 3sr0_A Adenylate kinase; phosp 95.2 0.011 3.7E-07 51.5 3.2 26 153-178 2-27 (206)
408 3n70_A Transport activator; si 95.2 0.025 8.6E-07 45.8 5.3 37 139-175 12-48 (145)
409 1ukz_A Uridylate kinase; trans 95.2 0.014 4.7E-07 49.9 3.8 25 151-175 15-39 (203)
410 1zak_A Adenylate kinase; ATP:A 95.1 0.011 3.7E-07 51.5 3.1 27 150-176 4-30 (222)
411 2iyv_A Shikimate kinase, SK; t 95.1 0.013 4.5E-07 49.2 3.5 26 152-177 3-28 (184)
412 3bos_A Putative DNA replicatio 95.1 0.026 9E-07 48.9 5.5 26 150-175 51-76 (242)
413 1lv7_A FTSH; alpha/beta domain 95.1 0.013 4.4E-07 52.2 3.5 25 152-176 46-70 (257)
414 2pbr_A DTMP kinase, thymidylat 95.1 0.013 4.3E-07 49.4 3.3 23 153-175 2-24 (195)
415 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.013 4.3E-07 52.7 3.4 25 150-174 3-27 (260)
416 3k53_A Ferrous iron transport 95.0 0.0099 3.4E-07 53.6 2.6 23 153-175 5-27 (271)
417 2ged_A SR-beta, signal recogni 95.0 0.013 4.4E-07 49.3 3.2 24 152-175 49-72 (193)
418 1z2a_A RAS-related protein RAB 95.0 0.013 4.5E-07 47.7 3.2 23 153-175 7-29 (168)
419 2dyk_A GTP-binding protein; GT 95.0 0.014 4.6E-07 47.3 3.2 23 153-175 3-25 (161)
420 1qf9_A UMP/CMP kinase, protein 95.0 0.013 4.4E-07 49.3 3.2 24 152-175 7-30 (194)
421 2pt5_A Shikimate kinase, SK; a 95.0 0.016 5.5E-07 47.7 3.8 24 153-176 2-25 (168)
422 4b4t_J 26S protease regulatory 95.0 0.029 9.9E-07 53.8 5.9 29 148-176 179-207 (405)
423 3h1t_A Type I site-specific re 95.0 0.022 7.7E-07 57.1 5.4 24 300-323 502-525 (590)
424 3bgw_A DNAB-like replicative h 95.0 0.03 1E-06 54.5 6.0 47 138-185 184-230 (444)
425 4a2p_A RIG-I, retinoic acid in 95.0 0.0067 2.3E-07 59.9 1.4 49 31-79 429-478 (556)
426 1kao_A RAP2A; GTP-binding prot 94.9 0.015 5E-07 47.2 3.2 23 153-175 5-27 (167)
427 1e6c_A Shikimate kinase; phosp 94.9 0.013 4.6E-07 48.4 3.0 25 152-176 3-27 (173)
428 2ce2_X GTPase HRAS; signaling 94.9 0.013 4.4E-07 47.4 2.8 23 153-175 5-27 (166)
429 1z0j_A RAB-22, RAS-related pro 94.9 0.015 5.1E-07 47.4 3.2 23 153-175 8-30 (170)
430 1u8z_A RAS-related protein RAL 94.9 0.015 5.1E-07 47.2 3.2 23 153-175 6-28 (168)
431 1ek0_A Protein (GTP-binding pr 94.9 0.015 5.2E-07 47.3 3.2 23 153-175 5-27 (170)
432 2erx_A GTP-binding protein DI- 94.9 0.015 5.1E-07 47.4 3.1 22 153-174 5-26 (172)
433 1ky3_A GTP-binding protein YPT 94.9 0.016 5.3E-07 47.9 3.2 23 153-175 10-32 (182)
434 1z08_A RAS-related protein RAB 94.8 0.016 5.4E-07 47.3 3.2 23 153-175 8-30 (170)
435 1c1y_A RAS-related protein RAP 94.8 0.016 5.5E-07 47.1 3.2 22 153-174 5-26 (167)
436 2chg_A Replication factor C sm 94.8 0.03 1E-06 47.6 5.0 34 142-175 27-62 (226)
437 2nzj_A GTP-binding protein REM 94.8 0.015 5.1E-07 47.8 2.9 23 153-175 6-28 (175)
438 1wms_A RAB-9, RAB9, RAS-relate 94.8 0.017 5.7E-07 47.6 3.2 23 153-175 9-31 (177)
439 1gm5_A RECG; helicase, replica 94.8 0.0026 8.9E-08 66.4 -2.2 54 27-80 612-665 (780)
440 2xb4_A Adenylate kinase; ATP-b 94.7 0.017 5.8E-07 50.5 3.3 23 153-175 2-24 (223)
441 3v9p_A DTMP kinase, thymidylat 94.7 0.015 5.1E-07 51.4 2.9 28 148-175 22-49 (227)
442 4ddu_A Reverse gyrase; topoiso 94.7 0.0045 1.5E-07 67.1 -0.6 81 1-96 315-406 (1104)
443 4b4t_L 26S protease subunit RP 94.7 0.038 1.3E-06 53.6 5.9 29 148-176 212-240 (437)
444 1g16_A RAS-related protein SEC 94.7 0.016 5.3E-07 47.3 2.8 23 153-175 5-27 (170)
445 3auy_A DNA double-strand break 94.7 0.015 5E-07 55.2 3.0 22 152-173 26-47 (371)
446 2qtf_A Protein HFLX, GTP-bindi 94.7 0.014 4.9E-07 55.3 2.9 23 153-175 181-203 (364)
447 1sxj_D Activator 1 41 kDa subu 94.7 0.023 8E-07 52.6 4.3 35 141-175 46-82 (353)
448 3q85_A GTP-binding protein REM 94.7 0.016 5.6E-07 47.3 2.8 22 153-174 4-25 (169)
449 3a8t_A Adenylate isopentenyltr 94.6 0.026 9.1E-07 52.8 4.5 26 150-175 39-64 (339)
450 1m2o_B GTP-binding protein SAR 94.6 0.018 6.3E-07 48.6 3.2 22 153-174 25-46 (190)
451 1r2q_A RAS-related protein RAB 94.6 0.019 6.5E-07 46.7 3.2 22 153-174 8-29 (170)
452 4ad8_A DNA repair protein RECN 94.6 0.006 2.1E-07 60.6 0.1 27 147-174 57-83 (517)
453 2p65_A Hypothetical protein PF 94.6 0.031 1.1E-06 46.2 4.5 25 151-175 43-67 (187)
454 2fn4_A P23, RAS-related protei 94.6 0.017 5.8E-07 47.6 2.9 22 153-174 11-32 (181)
455 2lkc_A Translation initiation 94.6 0.023 7.9E-07 46.8 3.6 26 150-175 7-32 (178)
456 3pqc_A Probable GTP-binding pr 94.6 0.015 5.1E-07 48.7 2.4 23 153-175 25-47 (195)
457 3be4_A Adenylate kinase; malar 94.6 0.023 7.8E-07 49.3 3.7 26 151-176 5-30 (217)
458 1e4v_A Adenylate kinase; trans 94.5 0.02 7E-07 49.5 3.3 24 153-176 2-25 (214)
459 1ypw_A Transitional endoplasmi 94.5 0.027 9.1E-07 59.0 4.8 30 147-176 234-263 (806)
460 1svi_A GTP-binding protein YSX 94.5 0.015 5.3E-07 48.8 2.4 22 153-174 25-46 (195)
461 1gku_B Reverse gyrase, TOP-RG; 94.5 0.01 3.4E-07 64.1 1.5 70 1-85 281-355 (1054)
462 4a2q_A RIG-I, retinoic acid in 94.5 0.012 4.3E-07 61.4 2.2 49 31-79 670-719 (797)
463 2oil_A CATX-8, RAS-related pro 94.5 0.021 7E-07 48.1 3.2 23 153-175 27-49 (193)
464 3q72_A GTP-binding protein RAD 94.5 0.014 4.6E-07 47.6 2.0 22 153-174 4-25 (166)
465 4dsu_A GTPase KRAS, isoform 2B 94.5 0.022 7.4E-07 47.4 3.2 23 153-175 6-28 (189)
466 1upt_A ARL1, ADP-ribosylation 94.5 0.022 7.4E-07 46.5 3.2 24 152-175 8-31 (171)
467 3tw8_B RAS-related protein RAB 94.5 0.016 5.5E-07 47.8 2.4 22 153-174 11-32 (181)
468 3clv_A RAB5 protein, putative; 94.5 0.022 7.4E-07 47.8 3.2 23 153-175 9-31 (208)
469 4edh_A DTMP kinase, thymidylat 94.5 0.022 7.6E-07 49.7 3.3 26 150-175 5-30 (213)
470 3bc1_A RAS-related protein RAB 94.4 0.022 7.4E-07 47.5 3.2 23 153-175 13-35 (195)
471 1z0f_A RAB14, member RAS oncog 94.4 0.022 7.5E-07 46.8 3.2 23 153-175 17-39 (179)
472 1r8s_A ADP-ribosylation factor 94.4 0.023 7.7E-07 46.1 3.2 22 154-175 3-24 (164)
473 2qen_A Walker-type ATPase; unk 94.4 0.037 1.3E-06 50.9 5.0 33 143-175 23-55 (350)
474 4a2w_A RIG-I, retinoic acid in 94.4 0.019 6.5E-07 61.2 3.3 48 31-78 670-718 (936)
475 2hxs_A RAB-26, RAS-related pro 94.4 0.023 8E-07 46.8 3.2 22 153-174 8-29 (178)
476 2y8e_A RAB-protein 6, GH09086P 94.4 0.02 7E-07 47.0 2.8 22 153-174 16-37 (179)
477 4b4t_I 26S protease regulatory 94.4 0.042 1.4E-06 53.1 5.3 28 149-176 214-241 (437)
478 3ihw_A Centg3; RAS, centaurin, 94.4 0.024 8E-07 47.7 3.2 22 153-174 22-43 (184)
479 2a9k_A RAS-related protein RAL 94.3 0.024 8.1E-07 47.0 3.2 23 153-175 20-42 (187)
480 2j9r_A Thymidine kinase; TK1, 94.3 0.05 1.7E-06 47.5 5.3 27 149-175 26-52 (214)
481 3io5_A Recombination and repai 94.3 0.056 1.9E-06 50.2 5.9 27 148-175 26-52 (333)
482 2g6b_A RAS-related protein RAB 94.3 0.024 8.2E-07 46.8 3.2 23 153-175 12-34 (180)
483 3con_A GTPase NRAS; structural 94.3 0.024 8.1E-07 47.5 3.2 23 153-175 23-45 (190)
484 2efe_B Small GTP-binding prote 94.3 0.024 8.3E-07 46.8 3.2 23 153-175 14-36 (181)
485 3b1v_A Ferrous iron uptake tra 94.3 0.022 7.5E-07 51.7 3.1 22 153-174 5-26 (272)
486 1fzq_A ADP-ribosylation factor 94.3 0.016 5.3E-07 48.6 2.0 22 153-174 18-39 (181)
487 3oiy_A Reverse gyrase helicase 94.3 0.015 5.2E-07 55.4 2.1 68 1-83 258-331 (414)
488 3lxw_A GTPase IMAP family memb 94.3 0.022 7.6E-07 50.7 3.0 23 153-175 23-45 (247)
489 2cxx_A Probable GTP-binding pr 94.3 0.018 6.1E-07 48.0 2.3 23 153-175 3-25 (190)
490 4tmk_A Protein (thymidylate ki 94.3 0.025 8.6E-07 49.4 3.3 26 150-175 2-27 (213)
491 3exa_A TRNA delta(2)-isopenten 94.3 0.044 1.5E-06 50.8 5.0 25 151-175 3-27 (322)
492 2ohf_A Protein OLA1, GTP-bindi 94.3 0.02 7E-07 54.8 2.9 30 145-174 16-45 (396)
493 1ak2_A Adenylate kinase isoenz 94.2 0.032 1.1E-06 49.0 3.9 27 150-176 15-41 (233)
494 2grj_A Dephospho-COA kinase; T 94.2 0.026 9E-07 48.4 3.3 27 149-175 10-36 (192)
495 1uj2_A Uridine-cytidine kinase 94.2 0.026 9E-07 50.2 3.4 25 152-176 23-47 (252)
496 2bov_A RAla, RAS-related prote 94.2 0.026 8.7E-07 47.8 3.2 23 153-175 16-38 (206)
497 2bme_A RAB4A, RAS-related prot 94.2 0.024 8.2E-07 47.1 2.8 23 153-175 12-34 (186)
498 2qag_A Septin-2, protein NEDD5 94.2 0.02 6.8E-07 54.2 2.5 22 154-175 40-61 (361)
499 3kkq_A RAS-related protein M-R 94.1 0.028 9.5E-07 46.7 3.2 22 153-174 20-41 (183)
500 1vg8_A RAS-related protein RAB 94.1 0.028 9.6E-07 47.6 3.2 23 153-175 10-32 (207)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=6.6e-28 Score=252.38 Aligned_cols=224 Identities=53% Similarity=0.816 Sum_probs=187.0
Q ss_pred hhHHhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCC--CcEEEEcCCcchhhhhHHHHHHHH
Q psy9590 126 LTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTA--RGKIGCTQPRRVAAMSVAKRVAEE 203 (350)
Q Consensus 126 ~~i~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~--~G~i~~~~~~~i~~~~~~~~v~~~ 203 (350)
..+.+.|..+|++..+..|...+..|+.++++|||||||||+++++++...+.. ++.+.+..|++..+...+.+++..
T Consensus 84 ~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~ 163 (773)
T 2xau_A 84 VDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEE 163 (773)
T ss_dssp HHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHH
Confidence 345667789999999999999999999999999999999999999987654332 446888899999888888999998
Q ss_pred hcccccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh------------
Q psy9590 204 FGCRLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT------------ 271 (350)
Q Consensus 204 ~~~~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l------------ 271 (350)
++...+..+++.+++......+..+..+|.|+++|.+++++++.++++||+||+|+|.+++|.+++++
T Consensus 164 ~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~i 243 (773)
T 2xau_A 164 MDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKI 243 (773)
T ss_dssp TTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEE
T ss_pred hCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceE
Confidence 88888888888777766666678899999999999999999999999999999999999998876554
Q ss_pred ----------HHHhhhh----------cCcccceeccCCcc---------------------------------------
Q psy9590 272 ----------KLSKFKK----------NQRLEPLYNKYEEP--------------------------------------- 292 (350)
Q Consensus 272 ----------~~~~~~~----------~~~v~~~~~~~~~~--------------------------------------- 292 (350)
.|.+||+ .+|++.+|......
T Consensus 244 Il~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L 323 (773)
T 2xau_A 244 IIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKI 323 (773)
T ss_dssp EEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHH
T ss_pred EEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHH
Confidence 4555665 45555555432211
Q ss_pred c----------------------------------c-------cceeEEEEEecccccccccCCEEEEEeCCeeeeEeee
Q psy9590 293 N----------------------------------A-------WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYN 331 (350)
Q Consensus 293 ~----------------------------------~-------~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~ 331 (350)
. . .+.++||+||+++|++++|+++.+|||.|+.+++.||
T Consensus 324 ~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd 403 (773)
T 2xau_A 324 SLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYN 403 (773)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEE
T ss_pred HHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeec
Confidence 0 0 0136999999999999999999999999999999999
Q ss_pred cCCCcceeeEeecccCCC
Q psy9590 332 SKTGMDSLVVTPISQDGH 349 (350)
Q Consensus 332 ~~~~~~~l~~~~is~~~a 349 (350)
++.|++.|.+.|+|++++
T Consensus 404 ~~~g~~~L~~~p~S~~s~ 421 (773)
T 2xau_A 404 PRIRVESLLVSPISKASA 421 (773)
T ss_dssp TTTTEEEEEEEECCHHHH
T ss_pred cccCccccccccCCHHHH
Confidence 999999999999998764
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.91 E-value=1.8e-24 Score=195.85 Aligned_cols=164 Identities=12% Similarity=0.147 Sum_probs=110.5
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc---------------chh----------hhhH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR---------------RVA----------AMSV 196 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~---------------~i~----------~~~~ 196 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.... .++ .+++
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 100 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTA 100 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCH
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcH
Confidence 44566789999999999999999999999999984 558888764210 011 1233
Q ss_pred HHHHHHHhcc------c---ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 197 AKRVAEEFGC------R---LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 197 ~~~v~~~~~~------~---~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
.+++...... . ..+.+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 101 ~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEP-------- 172 (235)
T 3tif_A 101 LENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP-------- 172 (235)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST--------
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC--------
Confidence 3444332110 0 0011222233333332 2467889999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..+++......... ..+ -.+||++||+.+. ..++|.+++++.|++.+.
T Consensus 173 -------------ts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 173 -------------TWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLKDGEVERE 226 (235)
T ss_dssp -------------TTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEETTEEEEE
T ss_pred -------------cccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEECCEEEEE
Confidence 444444433322111 111 1469999999995 589999999999998653
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.90 E-value=1.2e-24 Score=207.64 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=115.3
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC----------C---cchh----------hhhHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ----------P---RRVA----------AMSVA 197 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~----------~---~~i~----------~~~~~ 197 (350)
.+++..++++|++++|+|||||||||++++++|+.. +++|+|.+.. + +.++ .+++.
T Consensus 20 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~ 98 (359)
T 3fvq_A 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVY 98 (359)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHH
T ss_pred EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHH
Confidence 345666889999999999999999999999999984 5588886531 0 1122 23455
Q ss_pred HHHHHHhccc------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccCh
Q psy9590 198 KRVAEEFGCR------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDP 270 (350)
Q Consensus 198 ~~v~~~~~~~------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~ 270 (350)
++++...... ..+.+...+...+... .++.+.+|||||+||++|||||+.+|++||||||
T Consensus 99 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEP------------- 165 (359)
T 3fvq_A 99 RNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEP------------- 165 (359)
T ss_dssp HHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST-------------
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC-------------
Confidence 6665432110 1122333344434333 3477889999999999999999999999999999
Q ss_pred hHHHhhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 271 TKLSKFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 271 l~~~~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+++.........+. + -.+||++||+.+....++|.++|++.|++.+.
T Consensus 166 --------ts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~ 220 (359)
T 3fvq_A 166 --------FSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT 220 (359)
T ss_dssp --------TTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE
T ss_pred --------cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE
Confidence 33444433222211000 0 14699999999999999999999999998653
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.90 E-value=3.1e-24 Score=204.99 Aligned_cols=165 Identities=17% Similarity=0.149 Sum_probs=114.0
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------------------------cchhhhhH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------------------------RRVAAMSV 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------------------------~~i~~~~~ 196 (350)
.+++..++++|++++|+|||||||||++++++|+.. +++|+|.+... .-+..+++
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV 122 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 122 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCH
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCH
Confidence 345667889999999999999999999999999984 55888876321 01112234
Q ss_pred HHHHHHHhc---cc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 197 AKRVAEEFG---CR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 197 ~~~v~~~~~---~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.++++.... .. ..+.+...+...+... .++.+..|||||+||++|||||+.+|++||||||
T Consensus 123 ~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEP------------ 190 (366)
T 3tui_C 123 FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQA------------ 190 (366)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEEST------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC------------
Confidence 444443211 11 1112333333333332 3467789999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.+++........-+.+ -.+||++||+++....+||.++|++.|++.+
T Consensus 191 ---------Ts~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 191 ---------TSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 244 (366)
T ss_dssp ---------TTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred ---------CccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 444444433222111000 1479999999999999999999999999864
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.90 E-value=1.9e-24 Score=207.69 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=116.5
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------------------CcchhhhhHHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------------------PRRVAAMSVAKRVA 201 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------------------~~~i~~~~~~~~v~ 201 (350)
.+++..++++|++++|+|||||||||++++++|+.. +++|+|.+.. +.-+..+++.++++
T Consensus 19 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~ 97 (381)
T 3rlf_A 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMS 97 (381)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHT
T ss_pred EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHH
Confidence 345667789999999999999999999999999984 5588886631 11122345556665
Q ss_pred HHhc---cc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHH
Q psy9590 202 EEFG---CR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLS 274 (350)
Q Consensus 202 ~~~~---~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~ 274 (350)
.... .. ..+.+...+...+... .++.+..|||||+||++|||||+.+|++||||||
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEP----------------- 160 (381)
T 3rlf_A 98 FGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP----------------- 160 (381)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEEST-----------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECC-----------------
Confidence 4321 11 1123333344434332 3477889999999999999999999999999999
Q ss_pred hhhhcCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 275 KFKKNQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+..++..........+.+ -.++|++||+.+....++|.++|++.|++.+.
T Consensus 161 ----ts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 161 ----LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp ----TTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ----CcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 444444333222111110 14699999999999999999999999998654
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.90 E-value=6.2e-24 Score=196.52 Aligned_cols=164 Identities=15% Similarity=0.164 Sum_probs=111.5
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch-------------------------hhhh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV-------------------------AAMS 195 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i-------------------------~~~~ 195 (350)
.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.. ..+ ...+
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-p~~G~I~~~G-~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t 101 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-PSSGRILFDN-KPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETT-EECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCeEEEECC-EECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence 345566789999999999999999999999999984 5588887632 111 1122
Q ss_pred HHHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 196 VAKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 196 ~~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
+.++++... +.. ..+.+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEP----------- 170 (275)
T 3gfo_A 102 VYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP----------- 170 (275)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECT-----------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECc-----------
Confidence 333333221 100 0112222233333322 2467889999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccc---cc-c-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPN---AW-R-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~---~~-~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++......... .. + -.+||++||+++....+||.+++++.|++..
T Consensus 171 ----------ts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~ 224 (275)
T 3gfo_A 171 ----------TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL 224 (275)
T ss_dssp ----------TTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE
T ss_pred ----------cccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 444444433222110 11 0 1469999999999999999999999999853
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.89 E-value=5.3e-24 Score=196.21 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=112.1
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchh----------------------hhhHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVA----------------------AMSVAK 198 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~----------------------~~~~~~ 198 (350)
.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.. ..+. ..++.+
T Consensus 27 L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g-~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (266)
T 4g1u_C 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-PSHGECHLLG-QNLNSWQPKALARTRAVMRQYSELAFPFSVSE 104 (266)
T ss_dssp EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-CSSCEEEETT-EETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECC-EECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence 345667889999999999999999999999999984 5589997742 1111 122333
Q ss_pred HHHHHhccc----ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCC------CCcEEEEcCCCccccccccc
Q psy9590 199 RVAEEFGCR----LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLN------NYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 199 ~v~~~~~~~----~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~------~~~viIlDEpher~~~~d~l 267 (350)
++....... ..+.+...+...+... .++.+..|||||+||++||+||+. +|++||||||
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEP---------- 174 (266)
T 4g1u_C 105 VIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEP---------- 174 (266)
T ss_dssp HHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCC----------
T ss_pred HHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCc----------
Confidence 333211100 0111222222233322 346778999999999999999999 9999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccc---ccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPN---AWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~---~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++......... ..+ -.+||++||+++....+||.+++++.|++..
T Consensus 175 -----------ts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 175 -----------TSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp -----------CSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred -----------cccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 555554433322211 111 1469999999999999999999999999864
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.89 E-value=6.7e-24 Score=202.52 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=115.7
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------C--cch----------hhhhHHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------P--RRV----------AAMSVAKRVA 201 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~--~~i----------~~~~~~~~v~ 201 (350)
.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.. + +.+ ..+++.++++
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 109 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVS 109 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHH
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHH
Confidence 345566789999999999999999999999999984 5588886632 0 111 2234556665
Q ss_pred HHhc---cc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHH
Q psy9590 202 EEFG---CR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLS 274 (350)
Q Consensus 202 ~~~~---~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~ 274 (350)
.... .. ..+.+...+...+... .++.+.+|||||+||++||+||+.+|++|+||||
T Consensus 110 ~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP----------------- 172 (355)
T 1z47_A 110 FGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP----------------- 172 (355)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST-----------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC-----------------
Confidence 4321 11 1123334444444433 3467889999999999999999999999999999
Q ss_pred hhhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 275 KFKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.+|..........+. + -.+||++||+.+....++|.+++++.|++.+
T Consensus 173 ----~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 226 (355)
T 1z47_A 173 ----FAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ 226 (355)
T ss_dssp ----TCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred ----cccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 44444433322211110 0 1469999999999999999999999999865
No 9
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.89 E-value=7.6e-24 Score=202.53 Aligned_cols=165 Identities=19% Similarity=0.189 Sum_probs=115.3
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------C--cc----------hhhhhHHHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------P--RR----------VAAMSVAKRVAE 202 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~--~~----------i~~~~~~~~v~~ 202 (350)
+++..++++|++++|+|||||||||++++++|+.. +++|+|.+.. + +. ...+++.++++.
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 98 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAF 98 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHG
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHH
Confidence 44566788999999999999999999999999984 5588886632 0 11 122345566654
Q ss_pred Hhccc------ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHh
Q psy9590 203 EFGCR------LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSK 275 (350)
Q Consensus 203 ~~~~~------~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~ 275 (350)
..... ..+.+...+...+... .++.+.+|||||+||++||+||+.+|++|+||||
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP------------------ 160 (359)
T 2yyz_A 99 PLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP------------------ 160 (359)
T ss_dssp GGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC------------------
Confidence 32110 1122333344444333 3467889999999999999999999999999999
Q ss_pred hhhcCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 276 FKKNQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 276 ~~~~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.++..........+.+ -.++|++||+.+....++|.++|++.|++.+.
T Consensus 161 ---~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 161 ---LSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp ---TTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ---cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 344444333222111110 14699999999999999999999999998653
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.89 E-value=7.7e-24 Score=202.69 Aligned_cols=164 Identities=20% Similarity=0.242 Sum_probs=114.9
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------C--cch----------hhhhHHHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------P--RRV----------AAMSVAKRVAE 202 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~--~~i----------~~~~~~~~v~~ 202 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.. + +.+ ..+++.++++.
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 98 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAF 98 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHH
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHH
Confidence 34566788999999999999999999999999984 5588886631 0 111 22345566654
Q ss_pred Hhc---cc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHh
Q psy9590 203 EFG---CR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSK 275 (350)
Q Consensus 203 ~~~---~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~ 275 (350)
... .. ..+.+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP------------------ 160 (362)
T 2it1_A 99 PLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEP------------------ 160 (362)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESG------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc------------------
Confidence 321 11 1123344444444433 3477889999999999999999999999999999
Q ss_pred hhhcCcccceeccCCccccc---c--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 276 FKKNQRLEPLYNKYEEPNAW---R--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 276 ~~~~~~v~~~~~~~~~~~~~---~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.++..........+. + -.++|++||+.+....++|.++|++.|++.+
T Consensus 161 ---~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 214 (362)
T 2it1_A 161 ---LSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ 214 (362)
T ss_dssp ---GGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred ---cccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 33333333222211110 0 1469999999999999999999999999865
No 11
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.89 E-value=7.1e-24 Score=202.04 Aligned_cols=164 Identities=19% Similarity=0.130 Sum_probs=115.2
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-------------------cchhhhhHHHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-------------------RRVAAMSVAKRVAE 202 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-------------------~~i~~~~~~~~v~~ 202 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+... .-+..+++.++++.
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~ 95 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF 95 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHH
Confidence 34566788999999999999999999999999984 55888866320 11122345566554
Q ss_pred Hhc---ccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhh
Q psy9590 203 EFG---CRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKK 278 (350)
Q Consensus 203 ~~~---~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~ 278 (350)
... ....+.+...+...+... .++.+..|||||+||++||+||+.+|++|+||||
T Consensus 96 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP--------------------- 154 (348)
T 3d31_A 96 GMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP--------------------- 154 (348)
T ss_dssp HHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS---------------------
T ss_pred HHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc---------------------
Confidence 321 111133444444444433 3477889999999999999999999999999999
Q ss_pred cCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 279 NQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 279 ~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.++..........+.+ -.+||++||+.+....++|.+++++.|++.+
T Consensus 155 ~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 334444333222111110 1469999999999999999999999999865
No 12
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.89 E-value=1.3e-23 Score=188.97 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=107.7
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc---------------chh----------hhhH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR---------------RVA----------AMSV 196 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~---------------~i~----------~~~~ 196 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.... .++ ..++
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 99 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTA 99 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCH
Confidence 44566789999999999999999999999999984 558888764210 011 1122
Q ss_pred HHHHHHHh---ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 197 AKRVAEEF---GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 197 ~~~v~~~~---~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.+++.... +.. ..+.+...+...+... .++.+..|||||+||++||+||+.+|+++|||||
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP------------ 167 (224)
T 2pcj_A 100 LENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEP------------ 167 (224)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEEST------------
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC------------
Confidence 23332211 100 0112222333333322 3467889999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+ .+ -.+||++||+.+.. .++|.+++++.|++.
T Consensus 168 ---------t~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 168 ---------TGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVV 218 (224)
T ss_dssp ---------TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEE
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEE
Confidence 3344433322111100 00 14699999999986 899999999999874
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.89 E-value=1.2e-23 Score=192.96 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=110.8
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------------ch----------hhhhHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------------RV----------AAMSVAK 198 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------------~i----------~~~~~~~ 198 (350)
.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.... .+ ...++.+
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 101 (257)
T 1g6h_A 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLE 101 (257)
T ss_dssp EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHH
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHH
Confidence 345667789999999999999999999999999984 558888763210 01 1123334
Q ss_pred HHHHHhcc---c-----------c-----cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCC
Q psy9590 199 RVAEEFGC---R-----------L-----GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258 (350)
Q Consensus 199 ~v~~~~~~---~-----------~-----~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEph 258 (350)
++...... . . ...+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEP- 180 (257)
T 1g6h_A 102 NLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP- 180 (257)
T ss_dssp HHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST-
T ss_pred HHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC-
Confidence 44321110 0 0 011222223333322 3467889999999999999999999999999999
Q ss_pred ccccccccccChhHHHhhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 259 ERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 259 er~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. + -.+||++||+.+....++|.+++++.|++..
T Consensus 181 --------------------ts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 181 --------------------IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp --------------------TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred --------------------ccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 44444433222211000 0 1469999999999999999999999998753
No 14
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.89 E-value=1.2e-23 Score=193.54 Aligned_cols=164 Identities=14% Similarity=0.144 Sum_probs=110.8
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-------------chh----------hhhHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-------------RVA----------AMSVAK 198 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-------------~i~----------~~~~~~ 198 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.... .++ .+++.+
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e 119 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLN 119 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHH
Confidence 44566789999999999999999999999999984 558888763210 011 123334
Q ss_pred HHHHHh----ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccCh
Q psy9590 199 RVAEEF----GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDP 270 (350)
Q Consensus 199 ~v~~~~----~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~ 270 (350)
++.... +.. ..+.+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 120 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEP------------- 186 (263)
T 2olj_A 120 NITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP------------- 186 (263)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST-------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCC-------------
Confidence 443311 110 0112222333333322 3467889999999999999999999999999999
Q ss_pred hHHHhhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 271 TKLSKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 271 l~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+|+.........+. + -.+||++||+.+....++|.+++++.|++..
T Consensus 187 --------ts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 239 (263)
T 2olj_A 187 --------TSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE 239 (263)
T ss_dssp --------TTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred --------cccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 44444433322211100 0 1469999999999999999999999998853
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=1.7e-23 Score=191.80 Aligned_cols=165 Identities=12% Similarity=0.123 Sum_probs=111.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC----------cch----------hhhhHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP----------RRV----------AAMSVAKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~----------~~i----------~~~~~~~~v 200 (350)
.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+... +.+ ..+++.+++
T Consensus 31 l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl 109 (256)
T 1vpl_A 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYL 109 (256)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHH
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHH
Confidence 344566789999999999999999999999999984 55888866321 011 112333444
Q ss_pred HHH---hcccc---cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHH
Q psy9590 201 AEE---FGCRL---GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKL 273 (350)
Q Consensus 201 ~~~---~~~~~---~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~ 273 (350)
... .+... .+.+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP---------------- 173 (256)
T 1vpl_A 110 RFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP---------------- 173 (256)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST----------------
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC----------------
Confidence 321 11111 112333333333332 3467889999999999999999999999999999
Q ss_pred HhhhhcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 274 SKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. .-.+||++||+.+....++|.+++++.|++..
T Consensus 174 -----ts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~ 226 (256)
T 1vpl_A 174 -----TSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE 226 (256)
T ss_dssp -----TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE
T ss_pred -----ccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE
Confidence 44444433222211000 01469999999999999999999999998853
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.89 E-value=1.4e-23 Score=193.11 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=110.3
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch------------------------------
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV------------------------------ 191 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i------------------------------ 191 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.. ..+
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q 100 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVNG-QNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ 100 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETT-EECCEEECTTSSEEESCHHHHHHHHHHEEEECS
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECC-EEccccccccccccccChhhHHHHhcceEEEec
Confidence 44566789999999999999999999999999984 5588886632 111
Q ss_pred -----hhhhHHHHHHHHh----ccc---ccchhhhhhhcccCCC--ccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 192 -----AAMSVAKRVAEEF----GCR---LGQEVGYTIRFEDCTS--SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 192 -----~~~~~~~~v~~~~----~~~---~~~~v~~~~~~~~~~~--~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
..+++.+++.... +.. ..+.+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 101 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 180 (262)
T 1b0u_A 101 HFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP 180 (262)
T ss_dssp SCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred CcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1112333333211 110 0112223333333333 3467889999999999999999999999999999
Q ss_pred CccccccccccChhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 258 HERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 258 her~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ .+ -.+||++||+.+....++|.+++++.|++..
T Consensus 181 ---------------------ts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 181 ---------------------TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp ---------------------TTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred ---------------------CccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 4444443322211100 00 1359999999999999999999999998853
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.88 E-value=1e-23 Score=202.49 Aligned_cols=164 Identities=17% Similarity=0.256 Sum_probs=113.1
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-------C--cchhh----------hhHHHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-------P--RRVAA----------MSVAKRVAE 202 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-------~--~~i~~----------~~~~~~v~~ 202 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.. + +.+++ +++.++++.
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 106 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAF 106 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHT
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHH
Confidence 44566788999999999999999999999999984 5588887632 1 11222 234455543
Q ss_pred Hhcc---c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHh
Q psy9590 203 EFGC---R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSK 275 (350)
Q Consensus 203 ~~~~---~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~ 275 (350)
.... . ..+.+...+...+... .++.+.+|||||+||++||+||+.+|++|+||||
T Consensus 107 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP------------------ 168 (372)
T 1v43_A 107 PLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEP------------------ 168 (372)
T ss_dssp TCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEEST------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC------------------
Confidence 2111 0 0112333344334332 2467889999999999999999999999999999
Q ss_pred hhhcCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 276 FKKNQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 276 ~~~~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.++..........+.+ -.++|++||+.+....++|.+++++.|++.+
T Consensus 169 ---~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 222 (372)
T 1v43_A 169 ---LSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ 222 (372)
T ss_dssp ---TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred ---CccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 334444333222111110 1469999999999999999999999999865
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=1.4e-23 Score=190.71 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=108.5
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc------------chh----------hhhHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR------------RVA----------AMSVAKR 199 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~------------~i~----------~~~~~~~ 199 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.... .++ .+++.++
T Consensus 23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 101 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYEN 101 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHH
Confidence 34566788999999999999999999999999984 558888763210 011 1233344
Q ss_pred HHHHh--cccc---cchhhhhhhccc-CC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH
Q psy9590 200 VAEEF--GCRL---GQEVGYTIRFED-CT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK 272 (350)
Q Consensus 200 v~~~~--~~~~---~~~v~~~~~~~~-~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~ 272 (350)
+.... .... .+.+...+...+ .. ..++.+..|||||+||++||+||+.+|++||||||
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP--------------- 166 (240)
T 1ji0_A 102 LMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP--------------- 166 (240)
T ss_dssp HHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT---------------
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC---------------
Confidence 43211 0000 011111222221 21 23466789999999999999999999999999999
Q ss_pred HHhhhhcCcccceeccCCccccc----ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNAW----RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+. .-.+||++||+.+....++|.+++++.|++..
T Consensus 167 ------ts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 219 (240)
T 1ji0_A 167 ------SLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL 219 (240)
T ss_dssp ------TTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred ------cccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 44444433222111000 01459999999999999999999999998853
No 19
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.88 E-value=2.2e-23 Score=199.20 Aligned_cols=165 Identities=14% Similarity=0.178 Sum_probs=114.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC-----------C---cch----------hhhhH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ-----------P---RRV----------AAMSV 196 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~-----------~---~~i----------~~~~~ 196 (350)
.+++..++++|++++|+|||||||||++++++|+.. +++|+|.+.. + +.+ ..+++
T Consensus 21 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 345667789999999999999999999999999984 5578875531 1 111 12345
Q ss_pred HHHHHHHhcc---c---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 197 AKRVAEEFGC---R---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 197 ~~~v~~~~~~---~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.++++..... . ..+.+...+...+... .++.+..|||||+||++||+||+.+|++|+||||
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP------------ 167 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEP------------ 167 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC------------
Confidence 5666543211 0 0122333344444333 3467889999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.++..........+.+ -.+||++||+.+....++|.+++++.|++.+
T Consensus 168 ---------~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 221 (353)
T 1oxx_K 168 ---------FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221 (353)
T ss_dssp ---------TTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred ---------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 444444433322211111 1469999999999999999999999999864
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.88 E-value=4.4e-23 Score=190.16 Aligned_cols=164 Identities=18% Similarity=0.153 Sum_probs=112.1
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------c-----------chhhhhHHHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------R-----------RVAAMSVAKRVAE 202 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------~-----------~i~~~~~~~~v~~ 202 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+... + .+...++.+++..
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~ 102 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAF 102 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHH
Confidence 34566788999999999999999999999999984 55888866321 0 1112334444443
Q ss_pred Hhcc--c---ccchhhhhhhcccCC--C-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHH
Q psy9590 203 EFGC--R---LGQEVGYTIRFEDCT--S-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLS 274 (350)
Q Consensus 203 ~~~~--~---~~~~v~~~~~~~~~~--~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~ 274 (350)
.... . ..+.+...+...+.. . .++.+..|||||+||++||+||+.+|++||||||
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP----------------- 165 (266)
T 2yz2_A 103 AVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP----------------- 165 (266)
T ss_dssp TTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST-----------------
T ss_pred HHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCc-----------------
Confidence 2110 0 011233333433443 2 2467889999999999999999999999999999
Q ss_pred hhhhcCcccceeccCCcccccc----eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 275 KFKKNQRLEPLYNKYEEPNAWR----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~~~~~----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+.+ -.+||++||+.+....++|.+++++.|++..
T Consensus 166 ----ts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 166 ----LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp ----TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE
T ss_pred ----cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 444444333222111100 1469999999999999999999999998853
No 21
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.88 E-value=1.9e-23 Score=191.17 Aligned_cols=161 Identities=19% Similarity=0.154 Sum_probs=111.0
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE-------cC-CcchhhhhHHHHHHHHhcc-------
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC-------TQ-PRRVAAMSVAKRVAEEFGC------- 206 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~-------~~-~~~i~~~~~~~~v~~~~~~------- 206 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.. .| +.-....++.+++......
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 100 (253)
T 2nq2_C 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-PIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK 100 (253)
T ss_dssp EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-CSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCC
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccC
Confidence 34566788999999999999999999999999984 55788742 12 2222244566666542110
Q ss_pred -c--ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcc
Q psy9590 207 -R--LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRL 282 (350)
Q Consensus 207 -~--~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v 282 (350)
. ..+.+...+...+... .++.+..|||||+||++||+||+.+|++|||||| +..+
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP---------------------ts~L 159 (253)
T 2nq2_C 101 PKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEP---------------------TSAL 159 (253)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSS---------------------STTS
T ss_pred CCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC---------------------cccC
Confidence 0 0112333333333322 2467889999999999999999999999999999 4444
Q ss_pred cceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCe
Q psy9590 283 EPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 283 ~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
++.........+ .+ -.+||++||+.+....++|.+++++.|+
T Consensus 160 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 443322221100 00 1469999999999989999999999998
No 22
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.88 E-value=3e-23 Score=199.48 Aligned_cols=164 Identities=20% Similarity=0.259 Sum_probs=114.2
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC------------C---cch----------hhhhH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ------------P---RRV----------AAMSV 196 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~------------~---~~i----------~~~~~ 196 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.. + +.+ ..+++
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 98 (372)
T 1g29_1 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTV 98 (372)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCH
T ss_pred eeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-CCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCH
Confidence 34566788999999999999999999999999984 5578875521 1 111 22345
Q ss_pred HHHHHHHhc---cc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC
Q psy9590 197 AKRVAEEFG---CR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 197 ~~~v~~~~~---~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~ 269 (350)
.++++.... .. ..+.+...+...+... .++.+..|||||+||++||+||+.+|++|+||||
T Consensus 99 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP------------ 166 (372)
T 1g29_1 99 YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEP------------ 166 (372)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECT------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCC------------
Confidence 566654321 11 1123333444444333 3467889999999999999999999999999999
Q ss_pred hhHHHhhhhcCcccceeccCCcccccc-----eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.++..........+.+ -.+||++||+.+....++|.++|++.|++.+
T Consensus 167 ---------~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 167 ---------LSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp ---------TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred ---------CccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence 334444333222111100 1469999999999999999999999999865
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.88 E-value=2e-23 Score=189.57 Aligned_cols=163 Identities=13% Similarity=0.093 Sum_probs=110.9
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cchhh----------hhHHHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRVAA----------MSVAKRVAE 202 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i~~----------~~~~~~v~~ 202 (350)
+++..++++ ++++|+|||||||||++++++|+.. +.+|+|.+... +.+++ +++.+++..
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 93 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHH
Confidence 345667889 9999999999999999999999984 55888866320 11222 234444432
Q ss_pred Hhcc---c-ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhh
Q psy9590 203 EFGC---R-LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFK 277 (350)
Q Consensus 203 ~~~~---~-~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~ 277 (350)
.... . ..+.+...+...+... .++.+..|||||+||++||+||+.+|+++|||||
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP-------------------- 153 (240)
T 2onk_A 94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP-------------------- 153 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST--------------------
T ss_pred HHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC--------------------
Confidence 1110 0 0112233333333332 3467889999999999999999999999999999
Q ss_pred hcCcccceeccCCcccc---cc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 278 KNQRLEPLYNKYEEPNA---WR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 278 ~~~~v~~~~~~~~~~~~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ .+ -.+||++||+.+....++|.+++++.|++..
T Consensus 154 -ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 154 -LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp -TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred -cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 4444443332221110 00 1469999999999999999999999998853
No 24
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.87 E-value=1.3e-22 Score=186.59 Aligned_cols=162 Identities=12% Similarity=0.011 Sum_probs=110.9
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC--------Ccchh-h--------hhHHHHHHHHh
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ--------PRRVA-A--------MSVAKRVAEEF 204 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~--------~~~i~-~--------~~~~~~v~~~~ 204 (350)
+++..+++ |++++|+|||||||||++++++|+. +.+|+|.+.. .+.++ + .++.+++....
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~ 98 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYE 98 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHH
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhh
Confidence 34566899 9999999999999999999999998 4588887642 11233 2 23444443321
Q ss_pred c--ccccchhhhhhhcccCC-C-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcC
Q psy9590 205 G--CRLGQEVGYTIRFEDCT-S-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQ 280 (350)
Q Consensus 205 ~--~~~~~~v~~~~~~~~~~-~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~ 280 (350)
. ....+.+...+...+.. . .++++..||+||+||++||+||+.+|+++||||| +.
T Consensus 99 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP---------------------ts 157 (263)
T 2pjz_A 99 ELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEP---------------------FE 157 (263)
T ss_dssp HHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECT---------------------TT
T ss_pred hhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC---------------------cc
Confidence 1 11112233333333333 2 3467889999999999999999999999999999 44
Q ss_pred cccceeccCCcccccce-eEEEEEecccccccccCC-EEEEEeCCeeee
Q psy9590 281 RLEPLYNKYEEPNAWRI-SRVVIATNIAETSLTIDG-IFYVVDPGFVKQ 327 (350)
Q Consensus 281 ~v~~~~~~~~~~~~~~~-~~vi~sT~iae~s~ti~d-~~~vid~G~~~~ 327 (350)
.+++.........+.+. .+||++||+.+....++| .+++++.|++..
T Consensus 158 ~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~ 206 (263)
T 2pjz_A 158 NVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQG 206 (263)
T ss_dssp TCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEE
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEE
Confidence 44443332221111000 169999999999999999 999999998853
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.87 E-value=7.2e-23 Score=189.86 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=108.7
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-------------cchhhh------------hH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-------------RRVAAM------------SV 196 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-------------~~i~~~------------~~ 196 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+... +.++++ ++
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv 116 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERV 116 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBH
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCH
Confidence 44566789999999999999999999999999984 55899877421 012222 22
Q ss_pred HHHHHHHh-------ccc---ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 197 AKRVAEEF-------GCR---LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 197 ~~~v~~~~-------~~~---~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
.+++.... +.. ..+.+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 117 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEP-------- 188 (279)
T 2ihy_A 117 IDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEP-------- 188 (279)
T ss_dssp HHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST--------
T ss_pred HHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC--------
Confidence 22222100 000 0011222222233322 2467889999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCcccccc----eeEE--EEEecccccccccCCEEEEEeCCeeee
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR----ISRV--VIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~----~~~v--i~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+.+ -.+| |++||+.+....++|.+++++.|++..
T Consensus 189 -------------ts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 189 -------------AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp -------------TTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE
T ss_pred -------------ccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 444444332221110000 0348 999999999999999999999998853
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.87 E-value=8.3e-23 Score=186.26 Aligned_cols=162 Identities=15% Similarity=0.139 Sum_probs=102.7
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh---------------------hhHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA---------------------MSVAKRV 200 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~---------------------~~~~~~v 200 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.. ..+.. .++.+++
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~i~g-~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 103 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDG-HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI 103 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETT-EETTTSCHHHHHHHEEEECSSCCCTTSBHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECC-EEhhhCCHHHHHhcEEEEeCCCccccccHHHHH
Confidence 34566789999999999999999999999999984 5589987742 11111 1122222
Q ss_pred HHHhcccccchhhhhhhccc------CC------CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 201 AEEFGCRLGQEVGYTIRFED------CT------SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 201 ~~~~~~~~~~~v~~~~~~~~------~~------~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
.........+.+...+...+ .. .....+..|||||+||++||+||+.+|++||||||
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEP----------- 172 (247)
T 2ff7_A 104 SLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEA----------- 172 (247)
T ss_dssp TTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCC-----------
T ss_pred hccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-----------
Confidence 21000000001111110000 00 01234568999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ .+-.+||++||+.+... .+|.+++++.|++..
T Consensus 173 ----------ts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 173 ----------TSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVE 223 (247)
T ss_dssp ----------CSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEE
T ss_pred ----------cccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE
Confidence 4444433222111100 00146999999999774 599999999999854
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.86 E-value=1.3e-22 Score=185.13 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=108.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchh----------------------hhhHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVA----------------------AMSVAK 198 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~----------------------~~~~~~ 198 (350)
.+++..++++|++++|+|||||||||++++++|+.. +. |+|.+.. ..+. ..++.+
T Consensus 16 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~-G~i~~~g-~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GK-GSIQFAG-QPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92 (249)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CE-EEEEETT-EEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CC-eEEEECC-EECCcCCHHHHhceEEEECCCCccCCCCcHHH
Confidence 344566789999999999999999999999999984 55 9987742 1111 112233
Q ss_pred HHHHHhccc-ccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCc-------EEEEcCCCccccccccccC
Q psy9590 199 RVAEEFGCR-LGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYS-------VIMLDEAHERTIHTDVLFD 269 (350)
Q Consensus 199 ~v~~~~~~~-~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~-------viIlDEpher~~~~d~ll~ 269 (350)
++....... ..+.+...+...+... .++.+..|||||+||++||+||+.+|+ +||||||
T Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEP------------ 160 (249)
T 2qi9_C 93 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP------------ 160 (249)
T ss_dssp HHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESST------------
T ss_pred HHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECC------------
Confidence 332110000 0111222223333322 246678999999999999999999999 9999999
Q ss_pred hhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 270 PTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 270 ~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ .+ -.+||++||+.+....++|.+++++.|++..
T Consensus 161 ---------ts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 161 ---------MNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp ---------TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred ---------cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 4444443332221100 00 1469999999999989999999999998853
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.86 E-value=1.3e-22 Score=180.96 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=106.3
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC----------------CcchhhhhHHHHHHHHh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ----------------PRRVAAMSVAKRVAEEF 204 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~----------------~~~i~~~~~~~~v~~~~ 204 (350)
.+++..++++|++++|+|||||||||++++++|... +.+|+|.+.. +......++.+++....
T Consensus 25 l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 103 (214)
T 1sgw_A 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVA 103 (214)
T ss_dssp EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHH
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 345667889999999999999999999999999984 5578886532 11112234555554321
Q ss_pred ---cc-cccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcC
Q psy9590 205 ---GC-RLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQ 280 (350)
Q Consensus 205 ---~~-~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~ 280 (350)
+. ...+.+...+...+....++.+..||+||+||++||+||+.+|+++||||| +.
T Consensus 104 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEP---------------------ts 162 (214)
T 1sgw_A 104 SLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP---------------------VV 162 (214)
T ss_dssp HHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST---------------------TT
T ss_pred HhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC---------------------Cc
Confidence 10 111223333333333211567889999999999999999999999999999 44
Q ss_pred cccceeccCCcccccc----eeEEEEEecccccccccCCEEEEEeCCee
Q psy9590 281 RLEPLYNKYEEPNAWR----ISRVVIATNIAETSLTIDGIFYVVDPGFV 325 (350)
Q Consensus 281 ~v~~~~~~~~~~~~~~----~~~vi~sT~iae~s~ti~d~~~vid~G~~ 325 (350)
.+++.........+.+ -++||++||+.+....++|++++. +|++
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 163 AIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 4444332222111100 146999999999998988876644 4554
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.86 E-value=8.7e-23 Score=191.38 Aligned_cols=163 Identities=15% Similarity=0.160 Sum_probs=105.4
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch---------------------hhhhHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV---------------------AAMSVAKRV 200 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i---------------------~~~~~~~~v 200 (350)
+++...+++|++++|+|||||||||++++++++.. +.+|.|.+.. ..+ ...++.+++
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-p~~G~I~i~G-~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi 148 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD-ISSGCIRIDG-QDISQVTQASLRSHIGVVPQDTVLFNDTIADNI 148 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC-CSEEEEEETT-EETTSBCHHHHHHTEEEECSSCCCCSEEHHHHH
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCcEEEECC-EEcccCCHHHHhcceEEEecCCccCcccHHHHH
Confidence 34566788999999999999999999999999984 5588887632 111 112333444
Q ss_pred HHHhcccccchhhhhhh------ccc-CC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 201 AEEFGCRLGQEVGYTIR------FED-CT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 201 ~~~~~~~~~~~v~~~~~------~~~-~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
.........+.+....+ +.. .. ........|||||+||++|||||+.+|++||||||
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEP----------- 217 (306)
T 3nh6_A 149 RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEA----------- 217 (306)
T ss_dssp HTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC-----------
T ss_pred HhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECC-----------
Confidence 32110000011111100 000 00 11234468999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+++.........+ .+-++||+.||.+++... +|.++|++.|++.+.
T Consensus 218 ----------ts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~ 269 (306)
T 3nh6_A 218 ----------TSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVER 269 (306)
T ss_dssp ----------SSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEE
T ss_pred ----------cccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEE
Confidence 4444443222211111 011579999999999866 999999999999654
No 30
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.86 E-value=4.1e-22 Score=184.07 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=103.8
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh---------------------hhHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA---------------------MSVAKRV 200 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~---------------------~~~~~~v 200 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|.|.+.. ..+.. .++.+++
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-p~~G~I~~~g-~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-PTGGKVLLDG-EPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI 113 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETT-EEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHH
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEECC-EEcccCCHHHHhccEEEEecCCccccccHHHHH
Confidence 34566788999999999999999999999999984 5589887642 11111 1223333
Q ss_pred HHHhccccc-chh---------hhhhhcc--cCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 201 AEEFGCRLG-QEV---------GYTIRFE--DCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 201 ~~~~~~~~~-~~v---------~~~~~~~--~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
......... ..+ ...+... +.. ..++.+..|||||+||++||+||+.+|++||||||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP---------- 183 (271)
T 2ixe_A 114 AYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNA---------- 183 (271)
T ss_dssp HTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEEST----------
T ss_pred hhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECC----------
Confidence 221100000 000 0011111 111 12356779999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcc---cccc--eeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEP---NAWR--ISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~---~~~~--~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++........ ...+ -++||++||+.+... .+|.+++++.|++..
T Consensus 184 -----------ts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i~~ 236 (271)
T 2ixe_A 184 -----------TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVCE 236 (271)
T ss_dssp -----------TTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEEEE
T ss_pred -----------ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE
Confidence 33343332221111 0000 146999999999875 599999999998853
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.86 E-value=1.3e-22 Score=185.25 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=102.0
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhh--cCCCCCcEEEEcCCc------------chhh----------hhHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAE--AGFTARGKIGCTQPR------------RVAA----------MSVA 197 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~--~~~~~~G~i~~~~~~------------~i~~----------~~~~ 197 (350)
+++..++++|++++|+|||||||||++++++|+ . .+.+|+|.+.... .+++ .++.
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 98 (250)
T 2d2e_A 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEY-TVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIA 98 (250)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHH
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHH
Confidence 345667889999999999999999999999997 3 3457888763210 0111 1222
Q ss_pred HHHHHHh----ccc-----ccchhhhhhhcccCC-C-ccccccc-cChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 198 KRVAEEF----GCR-----LGQEVGYTIRFEDCT-S-SETLIKY-MTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 198 ~~v~~~~----~~~-----~~~~v~~~~~~~~~~-~-~~~~i~~-lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
+++.... +.. ....+...+...+.. . .++.+.. |||||+||++||+||+.+|++||||||
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEP-------- 170 (250)
T 2d2e_A 99 NFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDET-------- 170 (250)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECG--------
T ss_pred HHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCC--------
Confidence 3332211 100 001222223323331 2 2456677 999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCccc---cc-ceeEEEEEeccccccccc-CCEEEEEeCCeeee
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPN---AW-RISRVVIATNIAETSLTI-DGIFYVVDPGFVKQ 327 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~-~~~~vi~sT~iae~s~ti-~d~~~vid~G~~~~ 327 (350)
+..+++......... .. .-.+||++||+.+....+ +|.+++++.|++..
T Consensus 171 -------------ts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 171 -------------DSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA 224 (250)
T ss_dssp -------------GGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE
T ss_pred -------------CcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE
Confidence 333333322211110 00 014699999999998888 59999999998853
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.86 E-value=3.1e-22 Score=184.56 Aligned_cols=165 Identities=15% Similarity=0.122 Sum_probs=105.6
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC-CCCCcEEEEcCCc----------c--hhh----------hhHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAG-FTARGKIGCTQPR----------R--VAA----------MSVAK 198 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~-~~~~G~i~~~~~~----------~--i~~----------~~~~~ 198 (350)
+++..++++|++++|+|||||||||++++++|+.. .+.+|+|.+.... + +++ .++.+
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e 116 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQF 116 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHH
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHH
Confidence 44566788999999999999999999999999842 3457888764210 0 111 11222
Q ss_pred HHHHH-------hccc------ccchhhhhhhcccCC-C-cccccc-ccChhHHHHHHHHhhcCCCCcEEEEcCCCcccc
Q psy9590 199 RVAEE-------FGCR------LGQEVGYTIRFEDCT-S-SETLIK-YMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 199 ~v~~~-------~~~~------~~~~v~~~~~~~~~~-~-~~~~i~-~lS~G~~qr~~ia~all~~~~viIlDEpher~~ 262 (350)
++... .+.. ..+.+...+...+.. . .++.+. .|||||+||++||+||+.+|++||||||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEP----- 191 (267)
T 2zu0_C 117 FLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES----- 191 (267)
T ss_dssp HHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEEST-----
T ss_pred HHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCC-----
Confidence 22211 0100 001222233333332 1 235555 5999999999999999999999999999
Q ss_pred ccccccChhHHHhhhhcCcccceeccCCccc---cc-ceeEEEEEeccccccccc-CCEEEEEeCCeeee
Q psy9590 263 HTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AW-RISRVVIATNIAETSLTI-DGIFYVVDPGFVKQ 327 (350)
Q Consensus 263 ~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~-~~~~vi~sT~iae~s~ti-~d~~~vid~G~~~~ 327 (350)
+..+++......... .. .-.+||++||+.+....+ +|.+++++.|++..
T Consensus 192 ----------------ts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 192 ----------------DSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp ----------------TTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred ----------------CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 334443322211110 00 014699999999988776 89999999999853
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.86 E-value=2.2e-22 Score=182.41 Aligned_cols=163 Identities=13% Similarity=0.143 Sum_probs=105.6
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc-------CCcchhhhhHHHHHHHHhcccc--cchh
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT-------QPRRVAAMSVAKRVAEEFGCRL--GQEV 212 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~-------~~~~i~~~~~~~~v~~~~~~~~--~~~v 212 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+. |...+...++.+++........ ...+
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~ 100 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSV 100 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-EEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHH
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHH
Confidence 34556788999999999999999999999999984 457887542 2222334455566543211100 0011
Q ss_pred hhhhh---cccCC------CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCccc
Q psy9590 213 GYTIR---FEDCT------SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLE 283 (350)
Q Consensus 213 ~~~~~---~~~~~------~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~ 283 (350)
..... ..+.. ..++.+..|||||+||++||+||+.+|+++||||| +..++
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP---------------------ts~LD 159 (237)
T 2cbz_A 101 IQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP---------------------LSAVD 159 (237)
T ss_dssp HHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEST---------------------TTTSC
T ss_pred HHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc---------------------ccccC
Confidence 11111 11111 12356779999999999999999999999999999 33333
Q ss_pred ceeccCCcc------cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 284 PLYNKYEEP------NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 284 ~~~~~~~~~------~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+........ ...+-.+||++||+.+.. ..+|.+++++.|++..
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i~~ 208 (237)
T 2cbz_A 160 AHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKISE 208 (237)
T ss_dssp HHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEEEE
Confidence 221111000 000114699999999986 5799999999998853
No 34
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.86 E-value=2.2e-22 Score=183.10 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=104.1
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAKRVA 201 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~~v~ 201 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+... +.++++ ++.+++.
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~ 97 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLT 97 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTT
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHh
Confidence 34566788999999999999999999999999984 55888866320 112221 2333332
Q ss_pred HHhccc-ccchhhhhhhcccC------CC------ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 202 EEFGCR-LGQEVGYTIRFEDC------TS------SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 202 ~~~~~~-~~~~v~~~~~~~~~------~~------~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
...... ..+.+...+...+. .+ ....+..|||||+||++||+||+.+|++||||||
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEP----------- 166 (243)
T 1mv5_A 98 YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA----------- 166 (243)
T ss_dssp SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC-----------
T ss_pred hhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECC-----------
Confidence 110000 00111111111111 00 1234568999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
+..+++.........+. +-.+||++||+.+.. ..+|.+++++.|++.
T Consensus 167 ----------ts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 167 ----------TASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-VDADKIYFIEKGQIT 216 (243)
T ss_dssp ----------SCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHH-HHCSEEEEEETTEEC
T ss_pred ----------cccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-HhCCEEEEEECCEEE
Confidence 44444443332221111 114799999999876 469999999999885
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.85 E-value=4.4e-22 Score=182.82 Aligned_cols=161 Identities=14% Similarity=0.119 Sum_probs=102.7
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch------------hh---------hhHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV------------AA---------MSVAKRV 200 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i------------~~---------~~~~~~v 200 (350)
+++..++++|++++|+|||||||||++++++|+.. + +|+|.+.. ..+ ++ .++.+++
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g-~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIGG-KNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI 113 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEETT-EEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEECC-EEhhhcCHHHHhccEEEEcCCCcccccCHHHHH
Confidence 34566788999999999999999999999999984 4 79887632 111 11 1233333
Q ss_pred HHHhcccccchhhhhhhccc-------CCC-----ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 201 AEEFGCRLGQEVGYTIRFED-------CTS-----SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 201 ~~~~~~~~~~~v~~~~~~~~-------~~~-----~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
.........+.+...+...+ ... .+..+..|||||+||++||+||+.+|++||||||
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP----------- 182 (260)
T 2ghi_A 114 LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA----------- 182 (260)
T ss_dssp HTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECC-----------
T ss_pred hccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECc-----------
Confidence 22100000011111111101 110 1234678999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+..+++.........+ .+-++||++||+.+.. ..+|.+++++.|++..
T Consensus 183 ----------ts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~-~~~d~i~~l~~G~i~~ 233 (260)
T 2ghi_A 183 ----------TSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTI-SSAESIILLNKGKIVE 233 (260)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGS-TTCSEEEEEETTEEEE
T ss_pred ----------cccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 3344433222111100 0014699999999986 4699999999998853
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.85 E-value=1.1e-21 Score=176.76 Aligned_cols=161 Identities=16% Similarity=0.107 Sum_probs=102.6
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc-------CCcchhhhhHHHHHHHHhcccccchhhhh
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT-------QPRRVAAMSVAKRVAEEFGCRLGQEVGYT 215 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~-------~~~~i~~~~~~~~v~~~~~~~~~~~v~~~ 215 (350)
++..++++|++++|+|||||||||++++++|+.. +.+|+|.+. |...+...++.+++....... .......
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~-~~~~~~~ 103 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYD-EYRYRSV 103 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCC-HHHHHHH
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-CCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcC-hHHHHHH
Confidence 4556788999999999999999999999999984 558887553 211222225555554311100 0000000
Q ss_pred h------hcccCC------CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCccc
Q psy9590 216 I------RFEDCT------SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLE 283 (350)
Q Consensus 216 ~------~~~~~~------~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~ 283 (350)
. ...+.. ........|||||+||++||+||+.+|+++||||| +..++
T Consensus 104 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP---------------------ts~LD 162 (229)
T 2pze_A 104 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP---------------------FGYLD 162 (229)
T ss_dssp HHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST---------------------TTTSC
T ss_pred HHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc---------------------ccCCC
Confidence 0 011111 11234578999999999999999999999999999 22333
Q ss_pred ceeccCCcc----cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 284 PLYNKYEEP----NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 284 ~~~~~~~~~----~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+........ ...+-.+||++||+.+.. ..+|.+++++.|++..
T Consensus 163 ~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~G~i~~ 209 (229)
T 2pze_A 163 VLTEKEIFESCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSYF 209 (229)
T ss_dssp HHHHHHHHHHCCCCCTTTSEEEEECCCHHHH-HHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCChHHH-HhCCEEEEEECCEEEE
Confidence 222111100 000014699999999876 4699999999998853
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.84 E-value=3.9e-22 Score=192.67 Aligned_cols=162 Identities=20% Similarity=0.270 Sum_probs=100.2
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhh---------------------hHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAM---------------------SVAKR 199 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~---------------------~~~~~ 199 (350)
.+++..++++|++++|+|||||||||++++++|+.. .+|+|.+.. +.+... ++.++
T Consensus 37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G-~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~en 113 (390)
T 3gd7_A 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDG-VSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN 113 (390)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESS-CBTTSSCHHHHHHTEEEESCCCCCCSEEHHHH
T ss_pred eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECC-EECCcCChHHHhCCEEEEcCCcccCccCHHHH
Confidence 445667899999999999999999999999999974 579997742 222211 12222
Q ss_pred HHHHhcccccchhhhhhhcccCCC-cccccc-----------ccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRFEDCTS-SETLIK-----------YMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~~~~~~-~~~~i~-----------~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
++.. .....+.+...+...+... .++... .|||||+||++|||||+.+|++||||||
T Consensus 114 l~~~-~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEP---------- 182 (390)
T 3gd7_A 114 LDPN-AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP---------- 182 (390)
T ss_dssp HCTT-CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESH----------
T ss_pred hhhc-cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCC----------
Confidence 2100 0000011111111111111 112222 3999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.++......... ....-.++|++||+.| .+..+|.++|++.|++.+.
T Consensus 183 -----------ts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e-~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 183 -----------SAHLDPVTYQIIRRTLKQAFADCTVILCEARIE-AMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp -----------HHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSG-GGTTCSEEEEEETTEEEEE
T ss_pred -----------ccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHH-HHHhCCEEEEEECCEEEEE
Confidence 11122111110000 0000135999999987 5577999999999999753
No 38
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.82 E-value=5.4e-21 Score=178.06 Aligned_cols=162 Identities=16% Similarity=0.121 Sum_probs=101.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc-------CCcchhhhhHHHHHHHHhcccccchhh
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT-------QPRRVAAMSVAKRVAEEFGCRLGQEVG 213 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~-------~~~~i~~~~~~~~v~~~~~~~~~~~v~ 213 (350)
.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+. |...+...++.+++. ..... ...+.
T Consensus 54 l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~-~~~~~-~~~~~ 130 (290)
T 2bbs_A 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYD-EYRYR 130 (290)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-EEEEEEECCSCEEEECSSCCCCSSBHHHHHH-TTCCC-HHHHH
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEEEEEeCCCccCcccHHHHhh-Ccccc-hHHHH
Confidence 345667889999999999999999999999999984 447877542 221222235555554 21100 00000
Q ss_pred hhh------hcccCCC------ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCc
Q psy9590 214 YTI------RFEDCTS------SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQR 281 (350)
Q Consensus 214 ~~~------~~~~~~~------~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~ 281 (350)
..+ ....... ....+..|||||+||++||+||+.+|+++||||| +..
T Consensus 131 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP---------------------ts~ 189 (290)
T 2bbs_A 131 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP---------------------FGY 189 (290)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEEST---------------------TTT
T ss_pred HHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECC---------------------ccc
Confidence 000 0001111 1223568999999999999999999999999999 223
Q ss_pred ccceeccCCcc----cccceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 282 LEPLYNKYEEP----NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 282 v~~~~~~~~~~----~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+++........ ...+-.+||++||+.+.. ..+|.+++++.|++..
T Consensus 190 LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~-~~~d~i~~l~~G~i~~ 238 (290)
T 2bbs_A 190 LDVLTEKEIFESCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSYF 238 (290)
T ss_dssp CCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH-HHSSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH-HcCCEEEEEECCeEEE
Confidence 33222111100 000014699999999876 5699999999998853
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.82 E-value=7.8e-21 Score=193.37 Aligned_cols=165 Identities=18% Similarity=0.194 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC-----------cchhhh---------hHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP-----------RRVAAM---------SVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~-----------~~i~~~---------~~~~~ 199 (350)
+.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+... +.++++ ++.++
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 436 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD-VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN 436 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHH
Confidence 4677888999999999999999999999999999984 55888876321 011111 22233
Q ss_pred HHHHh-cccccchhhhhhhccc------CC------CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 200 VAEEF-GCRLGQEVGYTIRFED------CT------SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 200 v~~~~-~~~~~~~v~~~~~~~~------~~------~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
+.... .....+.+...++..+ .. ....+...|||||+||++||||++.+|+++|||||
T Consensus 437 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEp--------- 507 (582)
T 3b5x_A 437 IAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEA--------- 507 (582)
T ss_pred HhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc---------
Confidence 33211 0000111111111111 00 01234468999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.+|+.......... .+-+++|+.||..++. ..+|.++++|.|++.+
T Consensus 508 ------------ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~~ 558 (582)
T 3b5x_A 508 ------------TSALDTESERAIQAALDELQKNKTVLVIAHRLSTI-EQADEILVVDEGEIIE 558 (582)
T ss_pred ------------cccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-HhCCEEEEEECCEEEE
Confidence 4444443322221111 1115799999999976 4799999999999864
No 40
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.80 E-value=2.3e-20 Score=187.70 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=103.8
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC------Ccch---hhhhHHHHHHHHhccc---ccchhhh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ------PRRV---AAMSVAKRVAEEFGCR---LGQEVGY 214 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~------~~~i---~~~~~~~~v~~~~~~~---~~~~v~~ 214 (350)
++++|++++|+|+|||||||++++++|+.. +.+|.|.... |... ...++.+.+....... ....+..
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 368 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEIT-ADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE 368 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence 468999999999999999999999999984 5578775421 1111 1233444444321111 0111122
Q ss_pred hhhcccCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc
Q psy9590 215 TIRFEDCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN 293 (350)
Q Consensus 215 ~~~~~~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~ 293 (350)
.+...+.. ..++.+..|||||+||++||++|+.+|++|||||| +..+++.........
T Consensus 369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP---------------------T~gLD~~~~~~i~~~ 427 (538)
T 3ozx_A 369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQP---------------------SSYLDVEERYIVAKA 427 (538)
T ss_dssp TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST---------------------TTTCCHHHHHHHHHH
T ss_pred HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC---------------------ccCCCHHHHHHHHHH
Confidence 22222222 23477889999999999999999999999999999 555555433222111
Q ss_pred c---cc--eeEEEEEecccccccccCCEEEEEeCC
Q psy9590 294 A---WR--ISRVVIATNIAETSLTIDGIFYVVDPG 323 (350)
Q Consensus 294 ~---~~--~~~vi~sT~iae~s~ti~d~~~vid~G 323 (350)
+ ++ -.+||++||+++....+||.++|++.|
T Consensus 428 l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 428 IKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 1 00 146999999999999999999999864
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=1.8e-20 Score=191.24 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=105.2
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh---------------------hhHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA---------------------MSVAKR 199 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~---------------------~~~~~~ 199 (350)
.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.. ..+.. .++.++
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g-~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 448 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD-VDRGQILVDG-IDIRKIKRSSLRSSIGIVLQDTILFSTTVKEN 448 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC-CSEEEEEETT-EEGGGSCHHHHHHHEEEECTTCCCCSSBHHHH
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC-CCCeEEEECC-EEhhhCCHHHHHhceEEEeCCCccccccHHHH
Confidence 456677899999999999999999999999999984 5589987742 11111 123333
Q ss_pred HHHHhcccccchhhhhhhcc------cCCC--c----cccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRFE------DCTS--S----ETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~~------~~~~--~----~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+.+....+.. +..+ . ......|||||+||++||||++.+|+++|||||
T Consensus 449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEp---------- 518 (598)
T 3qf4_B 449 LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEA---------- 518 (598)
T ss_dssp HHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCC----------
T ss_pred HhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC----------
Confidence 33110000011111111100 0000 1 122357999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccccc---ceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.+|+........... +-+++|+.||..++. ..+|.++|+|.|++.+
T Consensus 519 -----------ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~-~~~d~i~~l~~G~i~~ 569 (598)
T 3qf4_B 519 -----------TSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTI-KNADLIIVLRDGEIVE 569 (598)
T ss_dssp -----------CTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHH-HHCSEEEEECSSSEEE
T ss_pred -----------ccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-HcCCEEEEEECCEEEE
Confidence 44444433222211111 115799999999986 4599999999999864
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.80 E-value=2.8e-20 Score=189.18 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=105.6
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchh---------------------hhhHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVA---------------------AMSVAKR 199 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~---------------------~~~~~~~ 199 (350)
.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.. ..+. ..++.++
T Consensus 357 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g-~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 434 (578)
T 4a82_A 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-VTSGQILIDG-HNIKDFLTGSLRNQIGLVQQDNILFSDTVKEN 434 (578)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-CSEEEEEETT-EEGGGSCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred eeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC-CCCcEEEECC-EEhhhCCHHHHhhheEEEeCCCccCcccHHHH
Confidence 345667889999999999999999999999999984 5588887642 1111 1133344
Q ss_pred HHHHhcccccchhhhhhhc------c-cCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIRF------E-DCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~~------~-~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+.+....+. . ..+ ....+...|||||+||++||||++.+|+++|||||
T Consensus 435 i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEp---------- 504 (578)
T 4a82_A 435 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA---------- 504 (578)
T ss_dssp HGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEEST----------
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc----------
Confidence 3321110000111111110 0 011 11233458999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|+......... ..+-+++|+.||..++. ..+|.++|++.|++.+.
T Consensus 505 -----------ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~-~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 505 -----------TSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI-THADKIVVIENGHIVET 556 (578)
T ss_dssp -----------TTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGT-TTCSEEEEEETTEEEEE
T ss_pred -----------cccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-HcCCEEEEEECCEEEEE
Confidence 444444322211110 01115799999999986 45999999999998654
No 43
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.80 E-value=2.8e-20 Score=189.34 Aligned_cols=162 Identities=16% Similarity=0.164 Sum_probs=105.6
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch------------h---------hhhHHHHH
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV------------A---------AMSVAKRV 200 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i------------~---------~~~~~~~v 200 (350)
+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.. ..+ + ..++.+++
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-p~~G~i~~~g-~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 437 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-IDEGHILMDG-HDLREYTLASLRNQVALVSQNVHLFNDTVANNI 437 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-CSEEEEEETT-EETTTBCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC-CCCCeEEECC-EEccccCHHHHHhhCeEEccCCcCCCCCHHHHH
Confidence 34566789999999999999999999999999984 5588887632 111 1 11333444
Q ss_pred HHHh-cccccchhhhhhhcccC------------CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 201 AEEF-GCRLGQEVGYTIRFEDC------------TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 201 ~~~~-~~~~~~~v~~~~~~~~~------------~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
.... .....+.+...++..+. .....+...|||||+||++||||++.+|+++|||||
T Consensus 438 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEp---------- 507 (582)
T 3b60_A 438 AYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA---------- 507 (582)
T ss_dssp HTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETT----------
T ss_pred hccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECc----------
Confidence 3211 00001111111111110 011234568999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeee
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~ 327 (350)
+-.+|+.......+.. .+-+++|++||..++. ..+|.++++|.|++.+
T Consensus 508 -----------ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 508 -----------TSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EQADEIVVVEDGIIVE 558 (582)
T ss_dssp -----------TSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGT-TTCSEEEEEETTEEEE
T ss_pred -----------cccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEE
Confidence 4444443332221111 1115799999999976 4799999999999864
No 44
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=2e-20 Score=190.47 Aligned_cols=164 Identities=18% Similarity=0.186 Sum_probs=106.2
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhh---------------------hHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAM---------------------SVAKR 199 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~---------------------~~~~~ 199 (350)
.+++..++++|++++|+|||||||||+++.++++.. +.+|+|.+.. ..+... ++.++
T Consensus 359 l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~-~~~G~i~i~g-~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 436 (587)
T 3qf4_A 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID-PERGRVEVDE-LDVRTVKLKDLRGHISAVPQETVLFSGTIKEN 436 (587)
T ss_dssp EEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC-CSEEEEEESS-SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCcEEEECC-EEcccCCHHHHHhheEEECCCCcCcCccHHHH
Confidence 445667889999999999999999999999999984 5589997742 222111 22233
Q ss_pred HHHHhcccccchhhhhh------hcc-cCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTI------RFE-DCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~------~~~-~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+.+.... ++. ..+ ....+...||||||||++||||++.+|+++|||||
T Consensus 437 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEp---------- 506 (587)
T 3qf4_A 437 LKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDC---------- 506 (587)
T ss_dssp HTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESC----------
T ss_pred HhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECC----------
Confidence 32110000000111100 000 000 11234568999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|+.......... .+-+++|+.||..++. ..+|.++|+|.|++.+.
T Consensus 507 -----------ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~-~~~d~i~vl~~G~i~~~ 558 (587)
T 3qf4_A 507 -----------TSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTA-LLADKILVLHEGKVAGF 558 (587)
T ss_dssp -----------CTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHH-TTSSEEEEEETTEEEEE
T ss_pred -----------cccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHH-HhCCEEEEEECCEEEEE
Confidence 4444443322221111 1115799999999986 58999999999998653
No 45
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.79 E-value=4.4e-20 Score=188.33 Aligned_cols=164 Identities=18% Similarity=0.226 Sum_probs=106.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch------------h---------hhhHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV------------A---------AMSVAKR 199 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i------------~---------~~~~~~~ 199 (350)
.+++..++++|++++|+|||||||||++++++|+.. +.+|+|.+.. ..+ + ..++.++
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-p~~G~i~~~g-~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 437 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD-PASGTISLDG-HDIRQLNPVWLRSKIGTVSQEPILFSCSIAEN 437 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC-CSEEEEEETT-EETTTBCHHHHHHSEEEECSSCCCCSSBHHHH
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCcEEEECC-EEhhhCCHHHHHhceEEEccCCcccCCCHHHH
Confidence 345667889999999999999999999999999984 5588887642 111 1 1133344
Q ss_pred HHHHhcc---cccchhhhhhhccc-------CC-Ccccc----ccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 200 VAEEFGC---RLGQEVGYTIRFED-------CT-SSETL----IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 200 v~~~~~~---~~~~~v~~~~~~~~-------~~-~~~~~----i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
+...... ...+.+...++..+ .+ ..++. ...|||||+||++||||++.+|+++|||||
T Consensus 438 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEp------- 510 (595)
T 2yl4_A 438 IAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEA------- 510 (595)
T ss_dssp HHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECC-------
T ss_pred HhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc-------
Confidence 4321110 01111211111111 11 11222 368999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|+.......... .+-++||+.||..++. ..+|.++++|.|++.+.
T Consensus 511 --------------ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 511 --------------TSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTI-KNANMVAVLDQGKITEY 562 (595)
T ss_dssp --------------CSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHH-HHSSEEEEEETTEEEEE
T ss_pred --------------ccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HcCCEEEEEECCEEEEE
Confidence 4455544322221111 0115799999999876 56999999999998653
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.79 E-value=8.1e-20 Score=183.96 Aligned_cols=154 Identities=13% Similarity=0.090 Sum_probs=102.4
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE-------cCCcc-hhhhhHHHHHHHH-h-cccccchhhhhh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC-------TQPRR-VAAMSVAKRVAEE-F-GCRLGQEVGYTI 216 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~-------~~~~~-i~~~~~~~~v~~~-~-~~~~~~~v~~~~ 216 (350)
++.+|++++|+|+|||||||++++++|... +.+|+|.+ .|... ....++.+.+... . .....+.+...+
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 386 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELL 386 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 357899999999999999999999999874 44676522 22211 1223333333221 0 111112222333
Q ss_pred hcccCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc
Q psy9590 217 RFEDCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW 295 (350)
Q Consensus 217 ~~~~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~ 295 (350)
...+.. ..++.+..|||||+||++||++|+.+|++|||||| +..+++.........+.
T Consensus 387 ~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEP---------------------t~~LD~~~~~~i~~~l~ 445 (538)
T 1yqt_A 387 KPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEP---------------------SAYLDVEQRLAVSRAIR 445 (538)
T ss_dssp TTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT---------------------TTTCCHHHHHHHHHHHH
T ss_pred HHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC---------------------cccCCHHHHHHHHHHHH
Confidence 333332 23477889999999999999999999999999999 55555544332221110
Q ss_pred c-----eeEEEEEecccccccccCCEEEEEeC
Q psy9590 296 R-----ISRVVIATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 296 ~-----~~~vi~sT~iae~s~ti~d~~~vid~ 322 (350)
+ -.+||++||+.+....+||.+++++.
T Consensus 446 ~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 446 HLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 0 14699999999999999999999985
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.78 E-value=9.9e-20 Score=185.45 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=102.1
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE-------cCCc-chhhhhHHHHHHHH-h-cccccchhhhhh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC-------TQPR-RVAAMSVAKRVAEE-F-GCRLGQEVGYTI 216 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~-------~~~~-~i~~~~~~~~v~~~-~-~~~~~~~v~~~~ 216 (350)
++.+|++++|+||||||||||+++++|+.. +.+|.|.+ .|.. .....++.+.+... . .......+...+
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l 456 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELL 456 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 367899999999999999999999999874 44676532 1221 11223333333221 0 001112223333
Q ss_pred hcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc
Q psy9590 217 RFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW 295 (350)
Q Consensus 217 ~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~ 295 (350)
...+... .++.+..|||||+||++||++|+.+|++|||||| +..+++.........+.
T Consensus 457 ~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEP---------------------t~~LD~~~~~~l~~~l~ 515 (607)
T 3bk7_A 457 KPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEP---------------------SAYLDVEQRLAVSRAIR 515 (607)
T ss_dssp HHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT---------------------TTTCCHHHHHHHHHHHH
T ss_pred HHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC---------------------ccCCCHHHHHHHHHHHH
Confidence 3333322 3577889999999999999999999999999999 44444443322211100
Q ss_pred c-----eeEEEEEecccccccccCCEEEEEeC
Q psy9590 296 R-----ISRVVIATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 296 ~-----~~~vi~sT~iae~s~ti~d~~~vid~ 322 (350)
+ -.+||++||+.+....++|.+++++.
T Consensus 516 ~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 516 HLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 0 14699999999999999999999984
No 48
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4e-19 Score=180.77 Aligned_cols=157 Identities=16% Similarity=0.129 Sum_probs=100.1
Q ss_pred HHHHhhcC-----CEEEEeCCCCCCHHHHHHHHHhhcCCCCCcE------EEE-cCC-cchhhhhHHHHHHHHhccc--c
Q psy9590 144 LIKAVSDN-----QILIVIGETGSGKTTQITQYLAEAGFTARGK------IGC-TQP-RRVAAMSVAKRVAEEFGCR--L 208 (350)
Q Consensus 144 i~~~i~~g-----~v~~liG~nGsGKSTll~~l~~~~~~~~~G~------i~~-~~~-~~i~~~~~~~~v~~~~~~~--~ 208 (350)
+..++.+| ++++|+|+|||||||++++++|+..+ .+|. +.. .|. ......++.+.+....... .
T Consensus 366 vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~ 444 (608)
T 3j16_B 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-DEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLN 444 (608)
T ss_dssp CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-SBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTS
T ss_pred eEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-CCCcCccCCcEEEecccccccCCccHHHHHHHHhhccccc
Confidence 44455555 88999999999999999999999854 4553 222 111 1111123333333221110 0
Q ss_pred cchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceec
Q psy9590 209 GQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYN 287 (350)
Q Consensus 209 ~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~ 287 (350)
...+...+...+... .++.+..|||||+||++||++|+.+|++|||||| +..+++...
T Consensus 445 ~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEP---------------------T~gLD~~~~ 503 (608)
T 3j16_B 445 PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEP---------------------SAYLDSEQR 503 (608)
T ss_dssp HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCT---------------------TTTCCHHHH
T ss_pred HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC---------------------CCCCCHHHH
Confidence 011112222222222 3477889999999999999999999999999999 555554433
Q ss_pred cCCcccccc-----eeEEEEEecccccccccCCEEEEEeC
Q psy9590 288 KYEEPNAWR-----ISRVVIATNIAETSLTIDGIFYVVDP 322 (350)
Q Consensus 288 ~~~~~~~~~-----~~~vi~sT~iae~s~ti~d~~~vid~ 322 (350)
......+.+ -.+||++||+++....++|+++|++.
T Consensus 504 ~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 504 IICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 222110000 14699999999999999999999985
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.1e-19 Score=181.64 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=97.5
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcc-----hhhhhHHHHHHHH------------------
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRR-----VAAMSVAKRVAEE------------------ 203 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~-----i~~~~~~~~v~~~------------------ 203 (350)
.+++|++++|+|||||||||++++++|+.. +.+|+|....... +............
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP 177 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCC-CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhh
Confidence 578999999999999999999999999984 4577763110000 0000000000000
Q ss_pred -------------hc---ccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 204 -------------FG---CRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 204 -------------~~---~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
.. ......+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 178 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEP--------- 248 (608)
T 3j16_B 178 RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEP--------- 248 (608)
T ss_dssp HHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECT---------
T ss_pred hhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECc---------
Confidence 00 000011222222222222 3467889999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcc---cccc-eeEEEEEecccccccccCCEEEEEeCCe
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-ISRVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~~~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
+-.+++........ ...+ -.+||++||+++....++|.++|++.|.
T Consensus 249 ------------ts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 249 ------------SSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp ------------TTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred ------------ccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 33333321111000 0000 1369999999999999999999998764
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.75 E-value=3.3e-19 Score=179.24 Aligned_cols=156 Identities=15% Similarity=0.098 Sum_probs=95.2
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc-----chhhhhHHHHHHHH----hc------------
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR-----RVAAMSVAKRVAEE----FG------------ 205 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~-----~i~~~~~~~~v~~~----~~------------ 205 (350)
..++|++++|+|||||||||++++++|... +..|.+...... .+............ .+
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEII-PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSC-CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 466899999999999999999999999884 446765211000 00000000000000 00
Q ss_pred -------------ccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 206 -------------CRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 206 -------------~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
......+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 100 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEP-------------- 165 (538)
T 3ozx_A 100 KFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQP-------------- 165 (538)
T ss_dssp TTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST--------------
T ss_pred hhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC--------------
Confidence 000001111122222221 3467889999999999999999999999999999
Q ss_pred HHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCe
Q psy9590 272 KLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
+-.+++........ ...+-.+||++||+.+....++|+++|++.|.
T Consensus 166 -------ts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 166 -------SSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp -------TTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred -------cccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 33333321111000 00001469999999999999999999998653
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.75 E-value=7.5e-19 Score=176.93 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=96.9
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE--------cCCcchhhh--------------------
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC--------TQPRRVAAM-------------------- 194 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~--------~~~~~i~~~-------------------- 194 (350)
++. .+++|++++|+|+|||||||++++++|... +.+|.+.. .....+...
T Consensus 40 ~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~ 117 (538)
T 1yqt_A 40 RLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDL 117 (538)
T ss_dssp CCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGG
T ss_pred CcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 355 688999999999999999999999999874 44665310 000000000
Q ss_pred -------hHHHHHHHHhcccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccc
Q psy9590 195 -------SVAKRVAEEFGCRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDV 266 (350)
Q Consensus 195 -------~~~~~v~~~~~~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ 266 (350)
++.+.+... .....+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 118 ~~~~~~~~v~e~~~~~---~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEP--------- 185 (538)
T 1yqt_A 118 IPKAVKGKVIELLKKA---DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEP--------- 185 (538)
T ss_dssp SGGGCCSBHHHHHHHH---CSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST---------
T ss_pred cchhhhccHHHHHhhh---hHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC---------
Confidence 000000000 00011112222222222 3467889999999999999999999999999999
Q ss_pred ccChhHHHhhhhcCcccceeccCCcccc---cc-eeEEEEEecccccccccCCEEEEEeCC
Q psy9590 267 LFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR-ISRVVIATNIAETSLTIDGIFYVVDPG 323 (350)
Q Consensus 267 ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~~~vi~sT~iae~s~ti~d~~~vid~G 323 (350)
+-.+++.........+ .+ -.+||++||+.+....+||.+++++.|
T Consensus 186 ------------Ts~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 186 ------------SSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp ------------TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred ------------cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 3344433211111000 00 136999999999999999999999864
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.75 E-value=1.6e-18 Score=176.63 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=97.7
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE--------cCCcchhhh-------------------
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC--------TQPRRVAAM------------------- 194 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~--------~~~~~i~~~------------------- 194 (350)
+++. .+++|++++|+|+|||||||++++++|+.. +.+|.+.. .....+...
T Consensus 109 ~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~ 186 (607)
T 3bk7_A 109 YRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVD 186 (607)
T ss_dssp ECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-CCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGG
T ss_pred CCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-CCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhh
Confidence 3445 689999999999999999999999999884 44665310 001111000
Q ss_pred --------hHHHHHHHHhcccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 195 --------SVAKRVAEEFGCRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 195 --------~~~~~v~~~~~~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
++.+.+.. ......+...+...+... .++.+..|||||+||++||+||+.+|++||||||
T Consensus 187 ~~~~~~~~tv~e~l~~---~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEP-------- 255 (607)
T 3bk7_A 187 LLPKAVKGKVRELLKK---VDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEP-------- 255 (607)
T ss_dssp GGGGTCCSBHHHHHHH---TCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECT--------
T ss_pred hchhhccccHHHHhhh---hHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC--------
Confidence 00000000 000011112222222222 3467889999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCccccc---c-eeEEEEEecccccccccCCEEEEEeCC
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R-ISRVVIATNIAETSLTIDGIFYVVDPG 323 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~-~~~vi~sT~iae~s~ti~d~~~vid~G 323 (350)
+-.+++.........+. + -.+||++||+.+....++|.+++++.+
T Consensus 256 -------------Ts~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 256 -------------SSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp -------------TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred -------------cccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 33444332211111000 0 146999999999998999999999865
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.74 E-value=8.8e-19 Score=185.12 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=60.8
Q ss_pred ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccc-eeEEEEEe
Q psy9590 226 TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR-ISRVVIAT 304 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~vi~sT 304 (350)
..+..|||||+||++||++|+.+|++|||||| +..+++.........+.. -.+||++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEP---------------------T~gLD~~s~~~L~~~L~~~g~tVIiIS 955 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEP---------------------TNYLDRDSLGALSKALKEFEGGVIIIT 955 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECG---------------------GGTCCHHHHHHHHHHHHSCSSEEEEEC
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECC---------------------ccCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 56789999999999999999999999999999 333333221111100000 03699999
Q ss_pred cccccccccCCEEEEEeCCeee
Q psy9590 305 NIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 305 ~iae~s~ti~d~~~vid~G~~~ 326 (350)
|+.+....+||.+++++.|++.
T Consensus 956 HD~e~v~~l~DrVivL~~G~Iv 977 (986)
T 2iw3_A 956 HSAEFTKNLTEEVWAVKDGRMT 977 (986)
T ss_dssp SCHHHHTTTCCEEECCBTTBCC
T ss_pred CCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999874
No 54
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.73 E-value=3.6e-18 Score=178.70 Aligned_cols=116 Identities=47% Similarity=0.726 Sum_probs=105.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc--CCCCCCeEEEEeCCCCCHHHHHcccccCC-----CCCeeEEEEeecccceeeecCe
Q psy9590 1 MVKGQEEIDTACEILYERMKSL--GPDVPELIILPVYSALPSEMQTRIFEAAP-----PGSRKVVIATNIAETSLTIDGI 73 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~--~~~~~~~~~~pl~~~l~~~~q~~~~~~~~-----~~~rkvilatniaets~ti~~i 73 (350)
|+||.++++.+++.|.+.+..+ ..+...+.++|+||+|+.++|.++|++.+ .|.+|||+|||+||++|+||+|
T Consensus 309 F~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v 388 (773)
T 2xau_A 309 FLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGI 388 (773)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTE
T ss_pred ECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCe
Confidence 8999999999999998654332 12335789999999999999999999988 8999999999999999999999
Q ss_pred EEEeeCCceeeeeeeccccccccccccCCCCccchhhhhcCCC
Q psy9590 74 FYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGK 116 (350)
Q Consensus 74 ~~viD~g~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k 116 (350)
++|||+|+.|.++|||++|+++|.+.|+|++...+|.+++|+.
T Consensus 389 ~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 389 VYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431 (773)
T ss_dssp EEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS
T ss_pred EEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC
Confidence 9999999999999999999999999999999889999988865
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.72 E-value=6.7e-18 Score=185.75 Aligned_cols=165 Identities=17% Similarity=0.174 Sum_probs=108.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC--------------------CcchhhhhHHHHH
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ--------------------PRRVAAMSVAKRV 200 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~--------------------~~~i~~~~~~~~v 200 (350)
.+++...+++|+.++|+|++||||||+++.+++++. +.+|+|.+.. ..-+..-++.+++
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~-~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI 512 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD-VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENI 512 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHH
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc-cccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHH
Confidence 345667889999999999999999999999999984 5589887632 1112222344555
Q ss_pred HHHhcccccchhhhhhhc-------ccCC-Ccccc----ccccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccccccc
Q psy9590 201 AEEFGCRLGQEVGYTIRF-------EDCT-SSETL----IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268 (350)
Q Consensus 201 ~~~~~~~~~~~v~~~~~~-------~~~~-~~~~~----i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll 268 (350)
.........+.+....+. ...+ ..++. -..||||||||++||||++.+|+++|||||
T Consensus 513 ~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~----------- 581 (1321)
T 4f4c_A 513 SLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEA----------- 581 (1321)
T ss_dssp HTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEEST-----------
T ss_pred hhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecc-----------
Confidence 422111111122211111 1111 11233 347999999999999999999999999999
Q ss_pred ChhHHHhhhhcCcccceeccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 269 DPTKLSKFKKNQRLEPLYNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 269 ~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|..-....... ..+-+++|+.||-..+. .-+|.++|+|.|++.+.
T Consensus 582 ----------tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i-~~aD~Iivl~~G~ive~ 633 (1321)
T 4f4c_A 582 ----------TSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI-RNADLIISCKNGQVVEV 633 (1321)
T ss_dssp ----------TTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT-TTCSEEEEEETTEEEEE
T ss_pred ----------cccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH-HhCCEEEEeeCCeeecc
Confidence 444554322111111 11227899999999865 67999999999999765
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.71 E-value=3.6e-18 Score=187.47 Aligned_cols=166 Identities=15% Similarity=0.165 Sum_probs=107.9
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC--------------------CcchhhhhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ--------------------PRRVAAMSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~--------------------~~~i~~~~~~~~ 199 (350)
+.+++...+++|++++|+|+|||||||+++.++++.. +.+|+|.+.. ...+...++.++
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 483 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD-PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN 483 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC-CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHH
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHH
Confidence 3556778899999999999999999999999999984 5588887632 111112234455
Q ss_pred HHHHhcccccchhhhhhh------c-ccCC-----CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccc
Q psy9590 200 VAEEFGCRLGQEVGYTIR------F-EDCT-----SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267 (350)
Q Consensus 200 v~~~~~~~~~~~v~~~~~------~-~~~~-----~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~l 267 (350)
+.........+.+....+ + .... ....+...||||||||++||||++.+|+++|||||
T Consensus 484 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEp---------- 553 (1284)
T 3g5u_A 484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA---------- 553 (1284)
T ss_dssp HHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEEST----------
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECC----------
Confidence 543221111111111110 0 0011 11234458999999999999999999999999999
Q ss_pred cChhHHHhhhhcCcccceeccCCccc---ccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 268 FDPTKLSKFKKNQRLEPLYNKYEEPN---AWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 268 l~~l~~~~~~~~~~v~~~~~~~~~~~---~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|.......... ..+-+++|+.||..++... +|.++|+|.|++.+.
T Consensus 554 -----------ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~ 605 (1284)
T 3g5u_A 554 -----------TSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQ 605 (1284)
T ss_dssp -----------TCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCE
T ss_pred -----------CCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE
Confidence 444443221111100 0011679999999998755 999999999998653
No 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.70 E-value=4.1e-18 Score=186.98 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=106.6
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------------------cchhhhhHHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------------------RRVAAMSVAKR 199 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------------------~~i~~~~~~~~ 199 (350)
+.+++..++++||+++|+|+|||||||+++.++++.. +.+|+|.+... ..+...++.++
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 1126 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD-PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC-CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHH
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHH
Confidence 3456778899999999999999999999999999984 55888876321 11111223333
Q ss_pred HHHHhcc--cccchhhhhh------hcccCCC--cc----ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccc
Q psy9590 200 VAEEFGC--RLGQEVGYTI------RFEDCTS--SE----TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 200 v~~~~~~--~~~~~v~~~~------~~~~~~~--~~----~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d 265 (350)
+...... ...+.+.... .+....+ .+ .....||||||||++|||||+.+|++||||||
T Consensus 1127 i~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEp-------- 1198 (1284)
T 3g5u_A 1127 IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEA-------- 1198 (1284)
T ss_dssp HTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESC--------
T ss_pred HhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCC--------
Confidence 3211000 0000111000 0111111 11 23457999999999999999999999999999
Q ss_pred cccChhHHHhhhhcCcccceeccCCcccc---cceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 266 VLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 266 ~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|..........+ .+-++||+.||..++. ..+|+++|++.|++.+.
T Consensus 1199 -------------Ts~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i-~~~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A 1199 -------------TSALDTESEKVVQEALDKAREGRTCIVIAHRLSTI-QNADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp -------------SSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGG-GSCSEEEEEETBEEEEE
T ss_pred -------------cccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHH-HcCCEEEEEECCEEEEE
Confidence 5555544322111100 0114699999999987 55999999999998754
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.70 E-value=1.1e-17 Score=183.99 Aligned_cols=165 Identities=21% Similarity=0.209 Sum_probs=108.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcch---------------------hhhhHHH
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRV---------------------AAMSVAK 198 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i---------------------~~~~~~~ 198 (350)
+.+++...|++|+.++|+|+|||||||+++.++++.. +.+|+|.+. ...+ ..-++.+
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-p~~G~I~iD-G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1171 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD-TLGGEIFID-GSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAE 1171 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC-CSSSEEEET-TEETTTBCHHHHHTTEEEECSSCCCCSEEHHH
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc-CCCCEEEEC-CEEhhhCCHHHHHhheEEECCCCEeeCccHHH
Confidence 3567788999999999999999999999999999984 558999774 2111 1122334
Q ss_pred HHHHHhcc--cccchhhhhhh------cc-cCC-Cccccc----cccChhHHHHHHHHhhcCCCCcEEEEcCCCcccccc
Q psy9590 199 RVAEEFGC--RLGQEVGYTIR------FE-DCT-SSETLI----KYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHT 264 (350)
Q Consensus 199 ~v~~~~~~--~~~~~v~~~~~------~~-~~~-~~~~~i----~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~ 264 (350)
+++..... ...+++....+ +. ..+ ..++.+ ..||||||||++||||++.+|++||||||
T Consensus 1172 NI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEa------- 1244 (1321)
T 4f4c_A 1172 NIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEA------- 1244 (1321)
T ss_dssp HHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESC-------
T ss_pred HHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCc-------
Confidence 44311100 00111111111 11 111 122333 47999999999999999999999999999
Q ss_pred ccccChhHHHhhhhcCcccceeccCCcc---cccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 265 DVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 265 d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
+-.+|..-.+.... ...+-++||+-||-++|. .-+|.++|+|.|++.|.
T Consensus 1245 --------------TSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi-~~aD~I~Vld~G~IvE~ 1296 (1321)
T 4f4c_A 1245 --------------TSALDTESEKVVQEALDRAREGRTCIVIAHRLNTV-MNADCIAVVSNGTIIEK 1296 (1321)
T ss_dssp --------------CCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTT-TTCSEEEEESSSSEEEE
T ss_pred --------------cccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHH-HhCCEEEEEECCEEEEE
Confidence 44444332211111 111226899999999876 45899999999999764
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.70 E-value=1.3e-17 Score=176.25 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=106.2
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhh-c-CCC--CCcEEEE-cCC--cchhhhhHHHHHHHHhcccccchh
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAE-A-GFT--ARGKIGC-TQP--RRVAAMSVAKRVAEEFGCRLGQEV 212 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~-~-~~~--~~G~i~~-~~~--~~i~~~~~~~~v~~~~~~~~~~~v 212 (350)
+.+++...+.+|++++|+|+||||||||++++++- . +.+ ....+.+ .+. ......++.+++..... ...+.+
T Consensus 450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~-~~~~~v 528 (986)
T 2iw3_A 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGV-GTKEAI 528 (986)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCS-SCHHHH
T ss_pred eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhc-CHHHHH
Confidence 35567778999999999999999999999999852 1 111 1112222 211 11233445555542110 001223
Q ss_pred hhhhhcccCC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCC
Q psy9590 213 GYTIRFEDCT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYE 290 (350)
Q Consensus 213 ~~~~~~~~~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~ 290 (350)
...+...+.. ..++.+..|||||+||++||++|+.+|++|||||| +-.+++......
T Consensus 529 ~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP---------------------Ts~LD~~~~~~l 587 (986)
T 2iw3_A 529 KDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP---------------------TNHLDTVNVAWL 587 (986)
T ss_dssp HHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST---------------------TTTCCHHHHHHH
T ss_pred HHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC---------------------ccCCCHHHHHHH
Confidence 3333333332 13467889999999999999999999999999999 333332221111
Q ss_pred ccccc-ceeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 291 EPNAW-RISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 291 ~~~~~-~~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
...+. .-.+||++||+.+....++|.+++++.|++.
T Consensus 588 ~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 588 VNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp HHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence 10000 0136999999999999999999999999874
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.69 E-value=3e-17 Score=169.54 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=59.7
Q ss_pred cccccccChhHHHHHHHHhhcCCCCc--EEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccc----ee
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLNNYS--VIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR----IS 298 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~~~~--viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~----~~ 298 (350)
++.+..|||||+||++||+||+.+|+ +|||||| +-.+++.........+.+ -.
T Consensus 197 ~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEP---------------------tsgLD~~~~~~l~~~l~~l~~~g~ 255 (670)
T 3ux8_A 197 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEP---------------------SIGLHQRDNDRLIATLKSMRDLGN 255 (670)
T ss_dssp TCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECT---------------------TTTCCGGGHHHHHHHHHHHHHTTC
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECC---------------------ccCCCHHHHHHHHHHHHHHHHcCC
Confidence 46788999999999999999999998 9999999 444444332222111100 14
Q ss_pred EEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 299 RVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 299 ~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
+||++||+++. +..+|.++++ +.|++.
T Consensus 256 tvi~vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~ 288 (670)
T 3ux8_A 256 TLIVVEHDEDT-MLAADYLIDIGPGAGIHGGEVV 288 (670)
T ss_dssp EEEEECCCHHH-HHHCSEEEEECSSSGGGCCSEE
T ss_pred EEEEEeCCHHH-HhhCCEEEEecccccccCCEEE
Confidence 69999999996 4679999999 677764
No 61
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=142.02 Aligned_cols=143 Identities=40% Similarity=0.630 Sum_probs=116.1
Q ss_pred hHHhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC----CCCcEEEEcCCcchhhhhHHHHHHH
Q psy9590 127 TIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF----TARGKIGCTQPRRVAAMSVAKRVAE 202 (350)
Q Consensus 127 ~i~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~----~~~G~i~~~~~~~i~~~~~~~~v~~ 202 (350)
.+.+.|..+|++.++.+++..+.+|+.+++.|+|||||||++..++..... .....+.+..|++..+....++++.
T Consensus 52 ~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 52 AILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp HHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 355678889999999999999999999999999999999998877654211 1133778888999888888999998
Q ss_pred HhcccccchhhhhhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 203 EFGCRLGQEVGYTIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 203 ~~~~~~~~~v~~~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
.++...+..+++..++..... .+..+..+|.|+..+.... .+.+.++||+||+|+|+++.|+++..+
T Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 132 ERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp TTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred HhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHH
Confidence 888777777777776665543 3466888999999988654 589999999999999999999886554
No 62
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.65 E-value=1.2e-16 Score=165.09 Aligned_cols=81 Identities=11% Similarity=-0.030 Sum_probs=59.6
Q ss_pred cccccccChhHHHHHHHHhhcCCCC---cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccc---cc-e
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLNNY---SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---WR-I 297 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~~~---~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~~-~ 297 (350)
++.+..|||||+||++||+||+.+| ++|||||| +-.+++.........+ .+ -
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEP---------------------t~~LD~~~~~~i~~~l~~l~~~g 596 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEP---------------------TTGLHVDDIARLLDVLHRLVDNG 596 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEEST---------------------TTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCC---------------------CCCCCHHHHHHHHHHHHHHHHCC
Confidence 4667899999999999999998876 59999999 4444433322211100 00 1
Q ss_pred eEEEEEecccccccccCCEEEEE------eCCeeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVV------DPGFVKQ 327 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vi------d~G~~~~ 327 (350)
.+||++||+++.. ..+|.++|+ +.|++..
T Consensus 597 ~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~ 631 (670)
T 3ux8_A 597 DTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVA 631 (670)
T ss_dssp CEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEE
T ss_pred CEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEE
Confidence 4699999999975 679999999 7898853
No 63
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.59 E-value=4.2e-17 Score=144.70 Aligned_cols=151 Identities=16% Similarity=0.186 Sum_probs=75.7
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE---cCC-----cchhhhhHH--HHHHHHhcccccchh
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC---TQP-----RRVAAMSVA--KRVAEEFGCRLGQEV 212 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~---~~~-----~~i~~~~~~--~~v~~~~~~~~~~~v 212 (350)
.+++.+++|++++|+|||||||||++++++|+ . +.+|+|.. ..+ +.+++++.. +++. ......
T Consensus 14 ~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~-----~~~~~~ 86 (208)
T 3b85_A 14 HYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-A-LQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKID-----PYLRPL 86 (208)
T ss_dssp HHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH-H-HHTTSCSEEEEEECSCCTTCCCCSSCC------C-----TTTHHH
T ss_pred HHHHhccCCCEEEEECCCCCCHHHHHHHHhcC-C-CcCCeeeeEEecCCchhhhcceEEecCCHHHHHH-----HHHHHH
Confidence 45666799999999999999999999999998 4 34676522 111 123333221 1110 000000
Q ss_pred hhhhhc-ccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCc
Q psy9590 213 GYTIRF-EDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEE 291 (350)
Q Consensus 213 ~~~~~~-~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~ 291 (350)
...+.. .........+.. ..||+||++||++|+.+|++||||||--- ..-.+.++. .+. .
T Consensus 87 ~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~--------~~~~l~~~l---------~~l-~ 147 (208)
T 3b85_A 87 HDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT--------TPAQMKMFL---------TRL-G 147 (208)
T ss_dssp HHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC--------CHHHHHHHH---------TTB-C
T ss_pred HHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc--------cHHHHHHHH---------HHh-c
Confidence 000000 000000111112 33999999999999999999999999111 100111111 111 1
Q ss_pred ccccceeEEEEEecccccccccCCEEEEEeCCeeeeE
Q psy9590 292 PNAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQK 328 (350)
Q Consensus 292 ~~~~~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~ 328 (350)
.. .+|| +||+.+.. +..+.+++|+....
T Consensus 148 ~g----~tii-vtHd~~~~----~~~~~~~~G~~~~~ 175 (208)
T 3b85_A 148 FG----SKMV-VTGDITQV----DLPGGQKSGLRLVR 175 (208)
T ss_dssp TT----CEEE-EEEC----------------CCHHHH
T ss_pred CC----CEEE-EECCHHHH----hCcCCCCCcHHHHH
Confidence 11 3477 99998855 34556788887643
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.57 E-value=7e-17 Score=159.36 Aligned_cols=157 Identities=10% Similarity=-0.003 Sum_probs=98.1
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCc-E-EEEcC-Cc-chhhhhH-------------HHHHHHHhc
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARG-K-IGCTQ-PR-RVAAMSV-------------AKRVAEEFG 205 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G-~-i~~~~-~~-~i~~~~~-------------~~~v~~~~~ 205 (350)
++...+++|++++|+|||||||||++++++++.. +.+| + |.+.. ++ .+.+++. .+++ ++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni---~~ 205 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-KFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT---WG 205 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-HHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT---CS
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-ccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh---cc
Confidence 6888999999999999999999999999999874 4477 6 76542 11 1222111 0011 11
Q ss_pred cc------ccchhhhhhhcccCCCccccccccChhHHHHHHHHhh--cCCCCcE----EEEcC-CCccccccccccChhH
Q psy9590 206 CR------LGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDL--DLNNYSV----IMLDE-AHERTIHTDVLFDPTK 272 (350)
Q Consensus 206 ~~------~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~a--ll~~~~v----iIlDE-pher~~~~d~ll~~l~ 272 (350)
.. ....+...+.+.+...... ...||+||+||+++|++ |+.+|++ ||||| |
T Consensus 206 ~~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP--------------- 269 (460)
T 2npi_A 206 QSLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS--------------- 269 (460)
T ss_dssp CBCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC---------------
T ss_pred cccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc---------------
Confidence 00 0011111122222222212 67899999999999999 9999999 99999 7
Q ss_pred HHhhhhcCcccceeccCCcccccc-eeEEEEEecccc------cccccCCE-----EEEEe-CCeee
Q psy9590 273 LSKFKKNQRLEPLYNKYEEPNAWR-ISRVVIATNIAE------TSLTIDGI-----FYVVD-PGFVK 326 (350)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~~~~~-~~~vi~sT~iae------~s~ti~d~-----~~vid-~G~~~ 326 (350)
.-.++.. .......... -.++|+.||..+ ....++|. +++++ +|.+.
T Consensus 270 ------ts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 270 ------ISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp ------GGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred ------ccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 1111111 0000000000 034889999877 66689999 99999 88774
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.54 E-value=6.2e-15 Score=143.42 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=55.3
Q ss_pred cChhHHHHHHHHhhcCCCC--cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccc---eeEEEEEec
Q psy9590 231 MTDGMLLRECLVDLDLNNY--SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR---ISRVVIATN 305 (350)
Q Consensus 231 lS~G~~qr~~ia~all~~~--~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~sT~ 305 (350)
+||||+||++||++++.+| ++|||||| +-.++..........+.+ -..||+.||
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEp---------------------t~~LD~~~~~~l~~~L~~l~~~~~vi~itH 354 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEV---------------------DAGIGGAAAIAVAEQLSRLADTRQVLVVTH 354 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESST---------------------TTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECC---------------------CCCCCHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 5999999999999999999 99999999 333333222111110000 135999999
Q ss_pred ccccccccCCEEEEE----eCCeeeeE
Q psy9590 306 IAETSLTIDGIFYVV----DPGFVKQK 328 (350)
Q Consensus 306 iae~s~ti~d~~~vi----d~G~~~~~ 328 (350)
+.+.. .++|.+++| +.|++...
T Consensus 355 ~~~~~-~~~d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 355 LAQIA-ARAHHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp CHHHH-TTCSEEEEEEEEEETTEEEEE
T ss_pred cHHHH-hhcCeEEEEEEeccCCceEEE
Confidence 99764 789999999 99987543
No 66
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.51 E-value=5.1e-15 Score=154.95 Aligned_cols=80 Identities=15% Similarity=0.067 Sum_probs=60.3
Q ss_pred cccccccChhHHHHHHHHhhcCCC---CcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc---c-e
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLNN---YSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---R-I 297 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~~---~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~-~ 297 (350)
++.+..|||||+||+.||++|+.+ |+++||||| +..+++.........+. + -
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEP---------------------TsGLD~~~~~~l~~lL~~L~~~G 783 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEP---------------------TTGLHPADVERLQRQLVKLVDAG 783 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECT---------------------TTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECC---------------------CCCCCHHHHHHHHHHHHHHHhCC
Confidence 467789999999999999999996 799999999 44444433222211000 0 1
Q ss_pred eEEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
.+||+.||+++.. .++|+++++ +.|++.
T Consensus 784 ~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv 817 (842)
T 2vf7_A 784 NTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLV 817 (842)
T ss_dssp CEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEE
T ss_pred CEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEE
Confidence 4699999999988 789999999 678774
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.51 E-value=4.9e-15 Score=127.04 Aligned_cols=28 Identities=0% Similarity=-0.270 Sum_probs=26.7
Q ss_pred ccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 230 YMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 230 ~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
..|+|++||++||++++.+|++|+||||
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEP 110 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLP 110 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCC
Confidence 3599999999999999999999999999
No 68
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.48 E-value=4.2e-14 Score=149.24 Aligned_cols=80 Identities=11% Similarity=0.006 Sum_probs=58.4
Q ss_pred ccccccChhHHHHHHHHhhcCCCC---cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc---ccc-ee
Q psy9590 226 TLIKYMTDGMLLRECLVDLDLNNY---SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR-IS 298 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all~~~---~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~-~~ 298 (350)
..+..|||||+||+.||++|+.+| ++|||||| +..+++......... ..+ =.
T Consensus 801 q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEP---------------------TsGLD~~~~~~L~~lL~~L~~~G~ 859 (916)
T 3pih_A 801 QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEP---------------------TVGLHFEDVRKLVEVLHRLVDRGN 859 (916)
T ss_dssp CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEEST---------------------TTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECC---------------------CCCCCHHHHHHHHHHHHHHHhcCC
Confidence 456789999999999999999865 79999999 444443322211110 000 14
Q ss_pred EEEEEecccccccccCCEEEEE------eCCeeee
Q psy9590 299 RVVIATNIAETSLTIDGIFYVV------DPGFVKQ 327 (350)
Q Consensus 299 ~vi~sT~iae~s~ti~d~~~vi------d~G~~~~ 327 (350)
+||+.||+++... .+|+++++ +.|++..
T Consensus 860 TVIvI~HdL~~i~-~ADrIivLgp~gg~~~G~Iv~ 893 (916)
T 3pih_A 860 TVIVIEHNLDVIK-NADHIIDLGPEGGKEGGYIVA 893 (916)
T ss_dssp EEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEE
T ss_pred EEEEEeCCHHHHH-hCCEEEEecCCCCCCCCEEEE
Confidence 6999999999864 59999999 8888854
No 69
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.48 E-value=4.3e-15 Score=128.51 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=56.6
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC------cchhhhhHHHHHHHHhcccccchhhhhhhcccCCCccc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP------RRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSET 226 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~------~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~ 226 (350)
.++|+|||||||||+++++++.......|... .+. +++.+..... ...+.+-..+.+......++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~-~~~~~~~~~~~ig~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 72 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWT-EEVRDPETKKRTGFRIITT--------EGKKKIFSSKFFTSKKLVGS 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEE-EEEC------CCEEEEEET--------TCCEEEEEETTCCCSSEETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEh-hhhccccccceeEEEeecC--------cHHHHHHHhhcCCccccccc
Confidence 58999999999999999999987422122111 000 1111110000 00000000000100011235
Q ss_pred cccccChhHHHHHHHHhh-----cCCCCcEEEEcC--C
Q psy9590 227 LIKYMTDGMLLRECLVDL-----DLNNYSVIMLDE--A 257 (350)
Q Consensus 227 ~i~~lS~G~~qr~~ia~a-----ll~~~~viIlDE--p 257 (350)
.+..||+||+||+.+|++ ++.+|+++|||| |
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp 110 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGK 110 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCST
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCC
Confidence 667899999999999996 999999999999 7
No 70
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.46 E-value=3.3e-14 Score=149.51 Aligned_cols=80 Identities=13% Similarity=-0.001 Sum_probs=59.5
Q ss_pred cccccccChhHHHHHHHHhhcCCCC---cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccc----e
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLNNY---SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWR----I 297 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~~~---~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~----~ 297 (350)
+..+..|||||+||+.||++|+.+| +++||||| +..+++.........+.+ -
T Consensus 840 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEP---------------------TsGLD~~~~~~l~~lL~~L~~~G 898 (972)
T 2r6f_A 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEP---------------------TTGLHVDDIARLLDVLHRLVDNG 898 (972)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECT---------------------TTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECC---------------------CCCCCHHHHHHHHHHHHHHHhCC
Confidence 4667899999999999999999865 99999999 444444333222110000 1
Q ss_pred eEEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
.+||++||+++.. ..+|.++++ +.|++.
T Consensus 899 ~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv 932 (972)
T 2r6f_A 899 DTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIV 932 (972)
T ss_dssp CEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEE
T ss_pred CEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEE
Confidence 4699999999985 689999999 678874
No 71
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.46 E-value=4.7e-14 Score=148.80 Aligned_cols=80 Identities=14% Similarity=0.004 Sum_probs=59.2
Q ss_pred cccccccChhHHHHHHHHhhcCCCC---cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc----ce
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLNNY---SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW----RI 297 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~~~---~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~----~~ 297 (350)
+..+..|||||+||+.||++|+.+| +++||||| +..+++.........+. .-
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEP---------------------TsGLD~~~~~~l~~lL~~L~~~G 916 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEP---------------------TTGLHFDDIRKLLNVINGLVDKG 916 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEEST---------------------TTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECC---------------------CCCCCHHHHHHHHHHHHHHHhCC
Confidence 4567899999999999999999865 99999999 44444433222111000 01
Q ss_pred eEEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
.+||++||+++.. ..+|.++++ +.|++.
T Consensus 917 ~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv 950 (993)
T 2ygr_A 917 NTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVV 950 (993)
T ss_dssp CEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEE
T ss_pred CEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEE
Confidence 4699999999985 689999999 678874
No 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.44 E-value=9.5e-14 Score=133.30 Aligned_cols=79 Identities=13% Similarity=-0.006 Sum_probs=58.8
Q ss_pred ccccccChhHHHHHHHHhhcC------CCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc
Q psy9590 226 TLIKYMTDGMLLRECLVDLDL------NNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR 296 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all------~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~ 296 (350)
..+..|||||+||++||+||+ .+|+++||||| +..+++........ ...+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEp---------------------t~~LD~~~~~~~~~~l~~l~~ 333 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEG---------------------FSSLDTENKEKIASVLKELER 333 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESC---------------------CTTSCHHHHHHHHHHHHGGGG
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCC---------------------CccCCHHHHHHHHHHHHHHHh
Confidence 567789999999999999998 79999999999 33333332211111 0000
Q ss_pred -eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 297 -ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 297 -~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
-.+||++||+.+. ...+|.+++++.|++.
T Consensus 334 ~g~tvi~itH~~~~-~~~~d~~~~l~~G~i~ 363 (365)
T 3qf7_A 334 LNKVIVFITHDREF-SEAFDRKLRITGGVVV 363 (365)
T ss_dssp SSSEEEEEESCHHH-HTTCSCEEEEETTEEC
T ss_pred CCCEEEEEecchHH-HHhCCEEEEEECCEEE
Confidence 1469999999998 6889999999999874
No 73
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.43 E-value=5.2e-14 Score=143.82 Aligned_cols=206 Identities=17% Similarity=0.162 Sum_probs=141.1
Q ss_pred hHHhhhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcc
Q psy9590 127 TIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGC 206 (350)
Q Consensus 127 ~i~~~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~ 206 (350)
+..+.|..+|++..++.+...+..|+.+.+.|++|||||+.+...+... ++++.+..|.+..+...+++++..++.
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~Qia~~l~~~~g~ 283 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATLGFGAYMSKAHGI 283 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHHHSC
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----CCeEEEEcchHHHHHHHHHHHHHHhCC
Confidence 4466788899999999999999999999999999999999988766542 347777789998888888888888876
Q ss_pred cccchhhhhhhcccCCCccccccccChhHHHHHHHHhh--cCCCCcEEEEcCCCccccccccccChh-HHHh------hh
Q psy9590 207 RLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDL--DLNNYSVIMLDEAHERTIHTDVLFDPT-KLSK------FK 277 (350)
Q Consensus 207 ~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~a--ll~~~~viIlDEpher~~~~d~ll~~l-~~~~------~~ 277 (350)
..+..+++.. ......+...|.|..+ .+. .+.+.+++|+||+|+++...+..+..+ +... .+
T Consensus 284 ~vg~~vG~~~-----~~~~~~IlV~TPGrLl----~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 284 DPNIRTGVRT-----ITTGAPVTYSTYGKFL----ADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp CCEEECSSCE-----ECCCCSEEEEEHHHHH----HTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEE
T ss_pred CeeEEECcEe-----ccCCCCEEEECcHHHH----hCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEE
Confidence 6555444422 1234567788888852 333 356799999999999988776543322 1100 00
Q ss_pred ------h-----cCc----ccceeccC------------Cccc--c--c-------------------------------
Q psy9590 278 ------K-----NQR----LEPLYNKY------------EEPN--A--W------------------------------- 295 (350)
Q Consensus 278 ------~-----~~~----v~~~~~~~------------~~~~--~--~------------------------------- 295 (350)
. .++ +...+... .... + |
T Consensus 355 l~SAT~~~~i~~~~p~i~~v~~~~~~~i~~~~~~~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e 434 (666)
T 3o8b_A 355 LATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV 434 (666)
T ss_dssp EEESSCTTCCCCCCTTEEEEECBSCSSEEETTEEECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG
T ss_pred EECCCCCcccccCCcceEEEeecccchhHHHHhhhhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH
Confidence 0 000 00000000 0000 0 0
Q ss_pred ---ceeEEEEEecccccccccCCEEEEEeCCeeeeEe----eecCCCcceeeEeecccC
Q psy9590 296 ---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKV----YNSKTGMDSLVVTPISQD 347 (350)
Q Consensus 296 ---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~----~~~~~~~~~l~~~~is~~ 347 (350)
+-++|++||+++|.+++|+ +.+|||.|+.++.+ |||+.++..+ ..|+|.+
T Consensus 435 r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~-~~P~s~~ 491 (666)
T 3o8b_A 435 IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT-TVPQDAV 491 (666)
T ss_dssp SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE-EEECBHH
T ss_pred HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc-cCcCCHH
Confidence 1169999999999999985 99999999998886 5677777554 5677754
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.42 E-value=2.9e-13 Score=127.62 Aligned_cols=87 Identities=10% Similarity=0.073 Sum_probs=60.2
Q ss_pred ccccccChhHHHHHHHHhhcC----CCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---ccccee
Q psy9590 226 TLIKYMTDGMLLRECLVDLDL----NNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRIS 298 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all----~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~ 298 (350)
..+..||+||+||++||++|+ .+|+++||||| +..+++........ ...+-.
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp---------------------~~~LD~~~~~~l~~~l~~~~~~~ 273 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEV---------------------DSPLDDYNAERFKRLLKENSKHT 273 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESC---------------------CSSCCHHHHHHHHHHHHHHTTTS
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCC---------------------CCCCCHHHHHHHHHHHHHhcCCC
Confidence 467799999999999999986 68999999999 22332221111100 000013
Q ss_pred EEEEEecccccccccCCEE--EEEeCCeeeeEeeecCC
Q psy9590 299 RVVIATNIAETSLTIDGIF--YVVDPGFVKQKVYNSKT 334 (350)
Q Consensus 299 ~vi~sT~iae~s~ti~d~~--~vid~G~~~~~~~~~~~ 334 (350)
.||++||..+ ...++|.. ++++.|..+...++...
T Consensus 274 ~vi~~tH~~~-~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 274 QFIVITHNKI-VMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEECCCTT-GGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred eEEEEECCHH-HHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 5999999965 56789976 88889999888877653
No 75
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.33 E-value=2e-13 Score=128.24 Aligned_cols=111 Identities=11% Similarity=-0.061 Sum_probs=69.6
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCc--EEE-EcC-CcchhhhhHHHHHHHH--hccccc---chhhhhhhc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGFTARG--KIG-CTQ-PRRVAAMSVAKRVAEE--FGCRLG---QEVGYTIRF 218 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G--~i~-~~~-~~~i~~~~~~~~v~~~--~~~~~~---~~v~~~~~~ 218 (350)
+++|++++|+|+|||||||+++++.+..... .| .+. +.+ +.-... +..+++... ++.+.. ..+...+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~-~G~~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~ 164 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW-DHHPRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTS 164 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS-TTCCCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc-CCCCeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 7889999999999999999999999987432 33 232 222 221111 222322210 111110 111122222
Q ss_pred ccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 219 EDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 219 ~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
......+..+..||+||+||+.+|++++.+|++||+|||+--
T Consensus 165 l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~ 206 (312)
T 3aez_A 165 VKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVL 206 (312)
T ss_dssp HHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTT
T ss_pred hCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCcccc
Confidence 221122356778999999999999999999999999999553
No 76
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.31 E-value=1.8e-12 Score=128.08 Aligned_cols=192 Identities=18% Similarity=0.193 Sum_probs=114.3
Q ss_pred HHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhccc-C
Q psy9590 145 IKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFED-C 221 (350)
Q Consensus 145 ~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~-~ 221 (350)
...+.+|+.+.+.+|||||||+. ++.+.... ..++.+.+..|.+..+....+.+. +. .+.+...... .
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~--~~~~~~lvl~Ptr~La~Q~~~~l~---g~----~v~~~~~~~~~~ 85 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAI--QQRLRTAVLAPTRVVAAEMAEALR---GL----PVRYQTSAVQRE 85 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHH--HTTCCEEEEECSHHHHHHHHHHTT---TS----CEEECC------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEECchHHHHHHHHHHhc---Cc----eEeEEecccccC
Confidence 34577899999999999999996 44433332 124566666787665444433332 21 2222111111 1
Q ss_pred CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhh---------------------cC
Q psy9590 222 TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKK---------------------NQ 280 (350)
Q Consensus 222 ~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~---------------------~~ 280 (350)
....+.+..++.|...+..+....+.+.++||+||+|+++..+++.++++.-..... ..
T Consensus 86 ~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~~~~~~ 165 (459)
T 2z83_A 86 HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDSNA 165 (459)
T ss_dssp --CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSS
T ss_pred CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhhhccCCC
Confidence 123356678888988877777777899999999999999877777665552111000 11
Q ss_pred cccceeccCCcc--------------c-c--c-------------------------------------ceeEEEEEecc
Q psy9590 281 RLEPLYNKYEEP--------------N-A--W-------------------------------------RISRVVIATNI 306 (350)
Q Consensus 281 ~v~~~~~~~~~~--------------~-~--~-------------------------------------~~~~vi~sT~i 306 (350)
|+.......+.. . + | +..+|++||++
T Consensus 166 pi~~~~~~~~~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~v 245 (459)
T 2z83_A 166 PIHDLQDEIPDRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDI 245 (459)
T ss_dssp CEEEEECCCCSSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEEESSC
T ss_pred CeEEecccCCcchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCceEEEECCh
Confidence 111100000000 0 0 0 12689999999
Q ss_pred cccccccCCEEEEEeCCeeeeEeeecCCCcceeeE---eecccC
Q psy9590 307 AETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVV---TPISQD 347 (350)
Q Consensus 307 ae~s~ti~d~~~vid~G~~~~~~~~~~~~~~~l~~---~~is~~ 347 (350)
+|.+++|++ .+|||+|+.+.+.|+. .+...+.. .|.|.+
T Consensus 246 ~~~GiDip~-~~VI~~G~~~~~~~~~-~~~~~~~~~~d~p~s~~ 287 (459)
T 2z83_A 246 SEMGANFGA-SRVIDCRKSVKPTILE-EGEGRVILGNPSPITSA 287 (459)
T ss_dssp C---CCCSC-SEEEECCEECCEEEEC-SSSCEEEECSCEECCHH
T ss_pred HHhCeecCC-CEEEECCccccccccc-ccccccccccCCCCCHH
Confidence 999999999 9999999999998873 35555555 777654
No 77
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.30 E-value=4.3e-13 Score=126.96 Aligned_cols=131 Identities=15% Similarity=0.070 Sum_probs=89.4
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFE 219 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~ 219 (350)
+.+.+...+++|++++|+|+|||||||+++.++++.. +.+|.|.+..+..+.. + .....++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~e~~~-~-----------~~~~~i~------ 220 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIEDTEEIVF-K-----------HHKNYTQ------ 220 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-TTSCEEEEESSCCCCC-S-----------SCSSEEE------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcEEEECCeecccc-c-----------cchhEEE------
Confidence 5677888999999999999999999999999999984 4589988865432110 0 0001111
Q ss_pred cCCCccccccccC-hhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccccee
Q psy9590 220 DCTSSETLIKYMT-DGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRIS 298 (350)
Q Consensus 220 ~~~~~~~~i~~lS-~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~ 298 (350)
.++ +|++||++|+++|..+|++||+|||--. + ..+.+ +... .+-.
T Consensus 221 ----------~~~ggg~~~r~~la~aL~~~p~ilildE~~~~----e-------~~~~l----------~~~~---~g~~ 266 (330)
T 2pt7_A 221 ----------LFFGGNITSADCLKSCLRMRPDRIILGELRSS----E-------AYDFY----------NVLC---SGHK 266 (330)
T ss_dssp ----------EECBTTBCHHHHHHHHTTSCCSEEEECCCCST----H-------HHHHH----------HHHH---TTCC
T ss_pred ----------EEeCCChhHHHHHHHHhhhCCCEEEEcCCChH----H-------HHHHH----------HHHh---cCCC
Confidence 111 8999999999999999999999999210 0 00000 0000 0112
Q ss_pred EEEEEecccccccccCCEEEEEeCCe
Q psy9590 299 RVVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 299 ~vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
+++++||..+ ....+|++++++.|.
T Consensus 267 tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 267 GTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp CEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred EEEEEEcccH-HHHHhhhheehhcCC
Confidence 3788899877 566778887777764
No 78
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.29 E-value=2.6e-12 Score=133.40 Aligned_cols=124 Identities=20% Similarity=0.122 Sum_probs=87.6
Q ss_pred hHHHHHHHHHH-hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHH--HHhcccccchhh
Q psy9590 137 IYKLKHELIKA-VSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVA--EEFGCRLGQEVG 213 (350)
Q Consensus 137 i~~~~~~i~~~-i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~--~~~~~~~~~~v~ 213 (350)
.+.++.+.+.. +..|+.+.+.||||||||++..+.+...-...++++.+..|++..+.....++. ..++...+..+|
T Consensus 31 l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 110 (715)
T 2va8_A 31 LNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSG 110 (715)
T ss_dssp CCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCS
T ss_pred CCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 45667777777 788999999999999999998766653212136789999998876666666652 122344444444
Q ss_pred hhhhcccCCCccccccccChhHHHHHHHHhhc-CCCCcEEEEcCCCccc
Q psy9590 214 YTIRFEDCTSSETLIKYMTDGMLLRECLVDLD-LNNYSVIMLDEAHERT 261 (350)
Q Consensus 214 ~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~al-l~~~~viIlDEpher~ 261 (350)
+........ .+..+..+|.|...++...... +.+.+++|+||.|+..
T Consensus 111 ~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 111 DYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp CSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG
T ss_pred CCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC
Confidence 433322221 2567889999999988777665 8899999999999954
No 79
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.25 E-value=1.4e-11 Score=121.36 Aligned_cols=190 Identities=18% Similarity=0.207 Sum_probs=117.7
Q ss_pred HhhcCCEEEEeCCCCCCHHH--HHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhccc-CCC
Q psy9590 147 AVSDNQILIVIGETGSGKTT--QITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFED-CTS 223 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKST--ll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~-~~~ 223 (350)
.+..++++.+.+|||||||+ +++.+.... ..++.+.+..|.+.-+... ...+. +..+++...... ...
T Consensus 15 ~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~--~~~~~~lvl~Ptr~La~Q~----~~~l~---g~~v~~~~~~~~~~~~ 85 (451)
T 2jlq_A 15 IFRKKRLTIMDLHPGAGKTKRILPSIVREAL--LRRLRTLILAPTRVVAAEM----EEALR---GLPIRYQTPAVKSDHT 85 (451)
T ss_dssp GGSTTCEEEECCCTTSSCCTTHHHHHHHHHH--HTTCCEEEEESSHHHHHHH----HHHTT---TSCEEECCTTCSCCCC
T ss_pred HHhcCCeEEEECCCCCCHhhHHHHHHHHHHH--hcCCcEEEECCCHHHHHHH----HHHhc---CceeeeeeccccccCC
Confidence 35567888999999999999 444443322 1244666667766543333 33321 122222222211 122
Q ss_pred ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhh---------------------cCcc
Q psy9590 224 SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKK---------------------NQRL 282 (350)
Q Consensus 224 ~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~---------------------~~~v 282 (350)
..+.+..++.|...+..+....+.+.+++|+||+|+++...+.++..+....... ..++
T Consensus 86 ~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~ 165 (451)
T 2jlq_A 86 GREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPI 165 (451)
T ss_dssp SSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCE
T ss_pred CCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhcCCCceEEEEccCCCccchhhhcCCCce
Confidence 3456778899988888887788899999999999998666666544431111000 0000
Q ss_pred cceeccCCc---------------ccc--c-------------------------------------ceeEEEEEecccc
Q psy9590 283 EPLYNKYEE---------------PNA--W-------------------------------------RISRVVIATNIAE 308 (350)
Q Consensus 283 ~~~~~~~~~---------------~~~--~-------------------------------------~~~~vi~sT~iae 308 (350)
-......+. ..+ | +..+|++||+++|
T Consensus 166 ~~~~~~~p~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~v~~ 245 (451)
T 2jlq_A 166 EDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISE 245 (451)
T ss_dssp EEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEECGGGG
T ss_pred EecCccCCchhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhccCCceEEEECCHHH
Confidence 000000000 000 0 1268999999999
Q ss_pred cccccCCEEEEEeCCeeeeEeeecCCCcceeeE---eecccC
Q psy9590 309 TSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVV---TPISQD 347 (350)
Q Consensus 309 ~s~ti~d~~~vid~G~~~~~~~~~~~~~~~l~~---~~is~~ 347 (350)
.++.+++ .+|||.|+.+.++|| ..+...+.. .|.|.+
T Consensus 246 ~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~ 285 (451)
T 2jlq_A 246 MGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPA 285 (451)
T ss_dssp SSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHH
T ss_pred hCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHH
Confidence 9999999 999999999999998 557777776 777764
No 80
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.24 E-value=7.9e-12 Score=125.48 Aligned_cols=148 Identities=11% Similarity=0.058 Sum_probs=89.5
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEE-EEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcc
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKI-GCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSE 225 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i-~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~ 225 (350)
.+.+|++++|+|+|||||||++.++++.... .++.+ .+...... .....+. ..++... ..........-.+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~ee~~--~~l~~~~-~~~g~~~----~~~~~~g~~~~~~ 348 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFAYEESR--AQLLRNA-YSWGMDF----EEMERQNLLKIVC 348 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEESSSCH--HHHHHHH-HTTSCCH----HHHHHTTSEEECC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEeCCH--HHHHHHH-HHcCCCH----HHHHhCCCEEEEE
Confidence 7899999999999999999999999998743 23333 33211111 1111111 1122211 1111100001112
Q ss_pred ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccce-----eccCCcc---cccc-
Q psy9590 226 TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPL-----YNKYEEP---NAWR- 296 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~-----~~~~~~~---~~~~- 296 (350)
.....||+|++||+++++++..+|++||+| | ...++.. ....... ...+
T Consensus 349 ~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p---------------------~~~Ld~~~~~~~~~~~i~~ll~~l~~~ 406 (525)
T 1tf7_A 349 AYPESAGLEDHLQIIKSEINDFKPARIAID-S---------------------LSALARGVSNNAFRQFVIGVTGYAKQE 406 (525)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-C---------------------HHHHTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred eccccCCHHHHHHHHHHHHHhhCCCEEEEc-C---------------------hHHHHhhCChHHHHHHHHHHHHHHHhC
Confidence 345679999999999999999999999999 9 1111111 0000000 0000
Q ss_pred eeEEEEEeccc----------ccccccCCEEEEEeCCe
Q psy9590 297 ISRVVIATNIA----------ETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 297 ~~~vi~sT~ia----------e~s~ti~d~~~vid~G~ 324 (350)
-.+||++||+. +....++|.+++++.|.
T Consensus 407 g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 407 EITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp TCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred CCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 04699999998 66678999999999886
No 81
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.23 E-value=7.1e-14 Score=135.81 Aligned_cols=113 Identities=12% Similarity=-0.033 Sum_probs=68.8
Q ss_pred HHHHHHHHhhcCC--------------------EEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--chhhhhHH
Q psy9590 140 LKHELIKAVSDNQ--------------------ILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--RVAAMSVA 197 (350)
Q Consensus 140 ~~~~i~~~i~~g~--------------------v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--~i~~~~~~ 197 (350)
..+++..++++|+ +++|+|+|||||||++++++|... +.+|.|...... +.......
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC----CCCEEEEC
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCeecceeEEeccc
Confidence 4667777888888 999999999999999999999874 345655432110 00000000
Q ss_pred HHHHHHhccccc---------chhhhhhhcccCCCccccccccChh--HHHHHHHHhhcCC----------CCcEEEEcC
Q psy9590 198 KRVAEEFGCRLG---------QEVGYTIRFEDCTSSETLIKYMTDG--MLLRECLVDLDLN----------NYSVIMLDE 256 (350)
Q Consensus 198 ~~v~~~~~~~~~---------~~v~~~~~~~~~~~~~~~i~~lS~G--~~qr~~ia~all~----------~~~viIlDE 256 (350)
. . ....... ..+...+...+....+..+ .+|+| |+||+.+|++++. +|+++++||
T Consensus 117 ~-~--~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~-~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDE 192 (413)
T 1tq4_A 117 P-N--IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFI-IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNE 192 (413)
T ss_dssp S-S--CTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEE-EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred c-c--cCCeeehHhhcccchHHHHHHHHHHcCCCccCCeE-EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCc
Confidence 0 0 0000000 1111122222222222223 39999 9999999999999 999999999
Q ss_pred C
Q psy9590 257 A 257 (350)
Q Consensus 257 p 257 (350)
|
T Consensus 193 P 193 (413)
T 1tq4_A 193 A 193 (413)
T ss_dssp H
T ss_pred c
Confidence 9
No 82
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.21 E-value=9.1e-11 Score=111.28 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=51.6
Q ss_pred ccccccChhHHH------HHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cc-c
Q psy9590 226 TLIKYMTDGMLL------RECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NA-W 295 (350)
Q Consensus 226 ~~i~~lS~G~~q------r~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~-~ 295 (350)
..+..||+||+| |+++|++++.+|++|||||| +..+++........ .. .
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp---------------------~~~LD~~~~~~l~~~l~~~~~ 302 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEP---------------------TPYLDEERRRKLITIMERYLK 302 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECC---------------------CTTCCHHHHHHHHHHHHHTGG
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECC---------------------CCCCCHHHHHHHHHHHHHHHh
Confidence 567799999999 67888899999999999999 33333322111100 00 0
Q ss_pred ceeEEEEEecccccccccCCEEEEEe
Q psy9590 296 RISRVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 296 ~~~~vi~sT~iae~s~ti~d~~~vid 321 (350)
.-.+||++||+.+ ...++|.+++++
T Consensus 303 ~~~~vi~~sH~~~-~~~~~d~~~~l~ 327 (339)
T 3qkt_A 303 KIPQVILVSHDEE-LKDAADHVIRIS 327 (339)
T ss_dssp GSSEEEEEESCGG-GGGGCSEEEEEE
T ss_pred cCCEEEEEEChHH-HHHhCCEEEEEE
Confidence 1135999999965 678999999885
No 83
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.16 E-value=1.5e-11 Score=127.42 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHH--Hhcccccchhhhh
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAE--EFGCRLGQEVGYT 215 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~--~~~~~~~~~v~~~ 215 (350)
+.++.+.+..+..|+.+.+.||||||||+...+.+... ...++++.+..|++..+....+.+.. .++...+...|+.
T Consensus 27 ~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~-~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~ 105 (702)
T 2p6r_A 27 FPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVRE-AIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDY 105 (702)
T ss_dssp CCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSC
T ss_pred CHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHH-HHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 44566677778889999999999999999976555432 12257888888988666666655521 1233333344443
Q ss_pred hhcccCCCccccccccChhHHHHHHHHhhc-CCCCcEEEEcCCCc-----cccccccccC
Q psy9590 216 IRFEDCTSSETLIKYMTDGMLLRECLVDLD-LNNYSVIMLDEAHE-----RTIHTDVLFD 269 (350)
Q Consensus 216 ~~~~~~~~~~~~i~~lS~G~~qr~~ia~al-l~~~~viIlDEphe-----r~~~~d~ll~ 269 (350)
....... .+..+..+|.|+..++...... +.+.+++|+||+|+ |....|.++.
T Consensus 106 ~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~ 164 (702)
T 2p6r_A 106 ESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVT 164 (702)
T ss_dssp BCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHH
T ss_pred Ccchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHH
Confidence 3322221 2567888999999887766554 78999999999998 7776666543
No 84
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.14 E-value=2.3e-11 Score=124.22 Aligned_cols=204 Identities=18% Similarity=0.192 Sum_probs=127.0
Q ss_pred hhccchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccc
Q psy9590 131 QRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRL 208 (350)
Q Consensus 131 ~r~~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~ 208 (350)
+++.+|+++. . +..+.+|+.+.+.++||||||+. ++.+..... .+..+.+..|.+..+... ...+.
T Consensus 169 ~~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi----~~~l~--- 236 (618)
T 2whx_A 169 ERIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEM----EEALR--- 236 (618)
T ss_dssp CCCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHH----HHHTT---
T ss_pred cccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHH----HHHhc---
Confidence 4677888776 2 77888999999999999999996 444433331 234566666766543333 33331
Q ss_pred cchhhhhhhc-ccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH-HH------------
Q psy9590 209 GQEVGYTIRF-EDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK-LS------------ 274 (350)
Q Consensus 209 ~~~v~~~~~~-~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~-~~------------ 274 (350)
+..+++.... .......+.+..++.|...+..+....+.+.++||+||+|+.+...+..+..+. ..
T Consensus 237 ~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SA 316 (618)
T 2whx_A 237 GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTA 316 (618)
T ss_dssp TSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECS
T ss_pred CCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEEC
Confidence 1223333222 122334567778899998888888888999999999999998666554443331 00
Q ss_pred -------hhhhc----CcccceeccCCcc-----------c---cc----------------------------------
Q psy9590 275 -------KFKKN----QRLEPLYNKYEEP-----------N---AW---------------------------------- 295 (350)
Q Consensus 275 -------~~~~~----~~v~~~~~~~~~~-----------~---~~---------------------------------- 295 (350)
.|... ..++..+...... . .|
T Consensus 317 T~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~ 396 (618)
T 2whx_A 317 TPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPK 396 (618)
T ss_dssp SCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTH
T ss_pred CCchhhhhhhccCCceeeecccCCHHHHHHHHHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHh
Confidence 01100 0000000000000 0 00
Q ss_pred ---ceeEEEEEecccccccccCCEEEEEeCCeeeeEee--ecCCCcceeeEeecccC
Q psy9590 296 ---RISRVVIATNIAETSLTIDGIFYVVDPGFVKQKVY--NSKTGMDSLVVTPISQD 347 (350)
Q Consensus 296 ---~~~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~--~~~~~~~~l~~~~is~~ 347 (350)
+..+|++||+++|.++.|+ +.+|||+|..+.+++ +...++......|+|.+
T Consensus 397 F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~ 452 (618)
T 2whx_A 397 TKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPA 452 (618)
T ss_dssp HHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHH
T ss_pred hcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHH
Confidence 1168999999999999995 999999999988876 44445666666676654
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.14 E-value=4.6e-11 Score=110.87 Aligned_cols=117 Identities=17% Similarity=0.109 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCc-EEEEcCCcchhhhhHHHHHHHH-hcccccc------
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARG-KIGCTQPRRVAAMSVAKRVAEE-FGCRLGQ------ 210 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G-~i~~~~~~~i~~~~~~~~v~~~-~~~~~~~------ 210 (350)
...++++..+.+|++++|+|+|||||||+++++++..... +| .+.+.... ........++... .+.....
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e-~~~~~~~~r~~~~~~~~~~~~~~~l~~ 100 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLE-ESVEETAEDLIGLHNRVRLRQSDSLKR 100 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESS-SCHHHHHHHHHHHHTTCCGGGCHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCc-CCHHHHHHHHHHHHcCCChhhcccccc
Confidence 4567788899999999999999999999999999987443 34 55432111 1111112222111 1111100
Q ss_pred ----------hhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCC
Q psy9590 211 ----------EVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258 (350)
Q Consensus 211 ----------~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEph 258 (350)
.+...+..... ........+|.+++++.+.++++..+|++||+|||.
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~l-~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept 157 (296)
T 1cr0_A 101 EIIENGKFDQWFDELFGNDTF-HLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHIS 157 (296)
T ss_dssp HHHHHTHHHHHHHHHHSSSCE-EEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHhccCCE-EEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 00000000000 001111346777754444488899999999999993
No 86
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.13 E-value=5.4e-11 Score=106.82 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=30.2
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHH--hhcCCCCCcEEEEc
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYL--AEAGFTARGKIGCT 186 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~--~~~~~~~~G~i~~~ 186 (350)
.+++|++++|+|||||||||++++++ +..... ++.+.+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~-~~~~~~~ 66 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG-EPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC-CCEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEE
Confidence 68899999999999999999999999 542222 4444443
No 87
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.13 E-value=5.3e-11 Score=111.17 Aligned_cols=105 Identities=17% Similarity=0.247 Sum_probs=64.5
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC--CcchhhhhHHHHHHHHhcccc-----c---------ch
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ--PRRVAAMSVAKRVAEEFGCRL-----G---------QE 211 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~--~~~i~~~~~~~~v~~~~~~~~-----~---------~~ 211 (350)
+++|++++|+|+|||||||+++.+++... +.+|+|.+.. ..+.++......++...+..+ . +.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~ 175 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 175 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHH
Confidence 56789999999999999999999999885 4478886642 222222111111111111100 0 00
Q ss_pred hhh---------hhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCc--EEEEcCC
Q psy9590 212 VGY---------TIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYS--VIMLDEA 257 (350)
Q Consensus 212 v~~---------~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~--viIlDEp 257 (350)
+.+ .++..+... .+..+..|| +||+.+|++++.+|+ ++++| |
T Consensus 176 l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-p 229 (302)
T 3b9q_A 176 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-G 229 (302)
T ss_dssp HHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-G
T ss_pred HHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-C
Confidence 100 011111111 224566788 899999999999999 99999 9
No 88
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.12 E-value=7.1e-12 Score=116.98 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCc--chhhhhHHH-HHHHHhcccccchhhhh
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR--RVAAMSVAK-RVAEEFGCRLGQEVGYT 215 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~--~i~~~~~~~-~v~~~~~~~~~~~v~~~ 215 (350)
.+.+++...+++|++++|+|||||||||++++++++. +|+|....+. .+...++.+ ++.. +......+...
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v~q~~~lf~~ti~~~ni~~--~~~~~~~~~~~ 187 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFANHKSHFWLASLADTRAAL--VDDATHACWRY 187 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGGGTTSGGGGGGGTTCSCEE--EEEECHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEecCccccccccHHHHhhcc--CccccHHHHHH
Confidence 4678899999999999999999999999999999987 7888653221 111111110 1100 00000011111
Q ss_pred hhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEE
Q psy9590 216 IRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIM 253 (350)
Q Consensus 216 ~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viI 253 (350)
+... .+..-....|||||+|| |||++.+|++||
T Consensus 188 i~~~--L~~gldg~~LSgGqkQR---ARAll~~p~iLl 220 (305)
T 2v9p_A 188 FDTY--LRNALDGYPVSIDRKHK---AAVQIKAPPLLV 220 (305)
T ss_dssp HHHT--TTGGGGTCCEECCCSSC---CCCEECCCCEEE
T ss_pred HHHH--hHccCCccCcCHHHHHH---HHHHhCCCCEEE
Confidence 1110 01111145799999999 999999999999
No 89
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.09 E-value=9.8e-11 Score=103.80 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=30.0
Q ss_pred HHHHH-HHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 141 KHELI-KAVSDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 141 ~~~i~-~~i~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.+.++ --+++|++++|+|||||||||+++++++...
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34444 3688999999999999999999999998653
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.09 E-value=1e-10 Score=103.63 Aligned_cols=166 Identities=13% Similarity=0.127 Sum_probs=85.0
Q ss_pred HHHHHH-HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcc
Q psy9590 141 KHELIK-AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFE 219 (350)
Q Consensus 141 ~~~i~~-~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~ 219 (350)
.++++. .+.+|++++|+|+|||||||+++++++.... .+|.+.+..... .......++. ..+..........+...
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 88 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTEE-SRDSIIRQAK-QFNWDFEEYIEKKLIII 88 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESSS-CHHHHHHHHH-HTTCCCGGGBTTTEEEE
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEccc-CHHHHHHHHH-HhcchHHHHhhCCEEEE
Confidence 455555 6889999999999999999999999976532 345554422111 1111112221 22221111000000111
Q ss_pred cCCC----ccccccccChhHHHHHHHHhhcCCCCc--EEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc
Q psy9590 220 DCTS----SETLIKYMTDGMLLRECLVDLDLNNYS--VIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN 293 (350)
Q Consensus 220 ~~~~----~~~~i~~lS~G~~qr~~ia~all~~~~--viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~ 293 (350)
+... ........|.+++++...+.....+|+ +||+|||..-. ..|.- ....+.+.+ .....+ .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~-~~d~~-~~~~~~~~l-----~~~~~~---~~ 158 (235)
T 2w0m_A 89 DALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF-LDKPA-MARKISYYL-----KRVLNK---WN 158 (235)
T ss_dssp ECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS-SSCGG-GHHHHHHHH-----HHHHHH---TT
T ss_pred eccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh-cCCHH-HHHHHHHHH-----HHHHHh---CC
Confidence 1000 011112348888888877777677999 99999994220 00100 000000000 000000 01
Q ss_pred ccceeEEEEEeccc--------ccccccCCEEEEEeCC
Q psy9590 294 AWRISRVVIATNIA--------ETSLTIDGIFYVVDPG 323 (350)
Q Consensus 294 ~~~~~~vi~sT~ia--------e~s~ti~d~~~vid~G 323 (350)
..||++||.. +....++|.+++++..
T Consensus 159 ----~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 159 ----FTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp ----EEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred ----CeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 3699999998 4466789999999854
No 91
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.06 E-value=5.8e-12 Score=112.12 Aligned_cols=110 Identities=15% Similarity=0.069 Sum_probs=58.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC------C-----cchhhhhHHHH-HHHHh----
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ------P-----RRVAAMSVAKR-VAEEF---- 204 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~------~-----~~i~~~~~~~~-v~~~~---- 204 (350)
.+++...+++|++++|+|||||||||++++++++. + |.+.+.. + ..+.+...... +....
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNED 88 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS--T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTC
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccc
Confidence 56788999999999999999999999999999987 2 6665421 1 11222211111 11100
Q ss_pred cccc--------c---chhhhhhhcccCCCccccccccChhHHHHHHH-----HhhcCCCCcEEEEcCC
Q psy9590 205 GCRL--------G---QEVGYTIRFEDCTSSETLIKYMTDGMLLRECL-----VDLDLNNYSVIMLDEA 257 (350)
Q Consensus 205 ~~~~--------~---~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~i-----a~all~~~~viIlDEp 257 (350)
.... + ..+...+. ....--.-..+|||++||+++ +++++.+|++++||||
T Consensus 89 ~l~~~~~~~~~~g~~~~~i~~~l~---~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 89 FLEYDNYANNFYGTLKSEYDKAKE---QNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHH---TTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH
T ss_pred hhhhhhcccccCCCcHHHHHHHHh---CCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH
Confidence 0000 0 00000000 000000113579999999999 7888989999999997
No 92
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.04 E-value=2.1e-10 Score=109.43 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=64.3
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcC--CcchhhhhHHHHHHHHhccc-----cc---------ch
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ--PRRVAAMSVAKRVAEEFGCR-----LG---------QE 211 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~--~~~i~~~~~~~~v~~~~~~~-----~~---------~~ 211 (350)
+++|++++|+|+|||||||+++.+++... +.+|+|.+.. ..+.++......++...+.. .. +.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~ 232 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 232 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcc-ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHH
Confidence 45789999999999999999999999884 4478886642 22222211111111111110 00 01
Q ss_pred hhh---------hhhcccCCC-ccccccccChhHHHHHHHHhhcCCCCc--EEEEcCC
Q psy9590 212 VGY---------TIRFEDCTS-SETLIKYMTDGMLLRECLVDLDLNNYS--VIMLDEA 257 (350)
Q Consensus 212 v~~---------~~~~~~~~~-~~~~i~~lS~G~~qr~~ia~all~~~~--viIlDEp 257 (350)
+.+ .++..+... .+..+..|| +||+.|+++++.+|+ ++++| |
T Consensus 233 l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-p 286 (359)
T 2og2_A 233 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-G 286 (359)
T ss_dssp HHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-G
T ss_pred HHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-C
Confidence 110 011111111 224566788 999999999999999 99999 9
No 93
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.04 E-value=1.8e-10 Score=119.66 Aligned_cols=133 Identities=18% Similarity=0.185 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHH-hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHH--Hhcccccchh
Q psy9590 136 PIYKLKHELIKA-VSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAE--EFGCRLGQEV 212 (350)
Q Consensus 136 pi~~~~~~i~~~-i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~--~~~~~~~~~v 212 (350)
..+.++.+.+.. +..|+.+.+.||||||||+...+.+...-...++++.+..|.+..+....+++.. .++...+...
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~ 102 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMAT 102 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEEC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEec
Confidence 356677788887 8889999999999999999875444322111257888889988877777766631 1222222222
Q ss_pred hhhhhcccCCCccccccccChhHHHHHHHHhhc-CCCCcEEEEcCCC-----ccccccccccC
Q psy9590 213 GYTIRFEDCTSSETLIKYMTDGMLLRECLVDLD-LNNYSVIMLDEAH-----ERTIHTDVLFD 269 (350)
Q Consensus 213 ~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~al-l~~~~viIlDEph-----er~~~~d~ll~ 269 (350)
|. .........+..+..+|.|+..++...... +.+.+++|+||.| +|....+.++.
T Consensus 103 G~-~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~ 164 (720)
T 2zj8_A 103 GD-YDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILA 164 (720)
T ss_dssp SC-SSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred CC-CCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHH
Confidence 21 111111122467889999999887766555 7889999999999 78877776654
No 94
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.03 E-value=7.8e-11 Score=124.86 Aligned_cols=142 Identities=15% Similarity=0.054 Sum_probs=75.9
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCC
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCT 222 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~ 222 (350)
++...+++|++++|+|||||||||+++++....-....|. .-|..-+.. . .+...+...+
T Consensus 654 disl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~---~vpa~~~~~------------~---~~d~i~~~ig-- 713 (934)
T 3thx_A 654 DVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGC---FVPCESAEV------------S---IVDCILARVG-- 713 (934)
T ss_dssp EEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTC---CBSEEEEEE------------E---CCSEEEEECC--
T ss_pred cceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCC---ccccccccc------------h---HHHHHHHhcC--
Confidence 3445567899999999999999999999833210000010 000000000 0 0000000001
Q ss_pred CccccccccChhHHHHHHHHhhc--CCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCC----cccccc
Q psy9590 223 SSETLIKYMTDGMLLRECLVDLD--LNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYE----EPNAWR 296 (350)
Q Consensus 223 ~~~~~i~~lS~G~~qr~~ia~al--l~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~----~~~~~~ 296 (350)
..+.....+|+|+.++..+++++ +.+|+++||||| ..++++...... .....+
T Consensus 714 ~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp---------------------~~GlD~~~~~~i~~~il~~l~~ 772 (934)
T 3thx_A 714 AGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL---------------------GRGTSTYDGFGLAWAISEYIAT 772 (934)
T ss_dssp ---------CHHHHHHHHHHHHHHHCCTTCEEEEESC---------------------SCSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCC---------------------CCCCCHHHHHHHHHHHHHHHHh
Confidence 11223345778777777777777 999999999999 222222111000 000000
Q ss_pred --eeEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 297 --ISRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 297 --~~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
-.+||++||+.|.. .++|....|.+|.+.
T Consensus 773 ~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 773 KIGAFCMFATHFHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp TTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred cCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence 13699999997754 688888888888775
No 95
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.02 E-value=1.1e-10 Score=121.14 Aligned_cols=110 Identities=12% Similarity=0.023 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhh--cC--------------CCC-----------CCeEEEEeCCCCCHHHHHcccccCCCC
Q psy9590 1 MVKGQEEIDTACEILYERMKS--LG--------------PDV-----------PELIILPVYSALPSEMQTRIFEAAPPG 53 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~--~~--------------~~~-----------~~~~~~pl~~~l~~~~q~~~~~~~~~~ 53 (350)
|+||.++++.+++.|.+.... +. .+. ....+.++||+|+.++|.++++..+.|
T Consensus 258 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g 337 (715)
T 2va8_A 258 FRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQR 337 (715)
T ss_dssp ECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT
T ss_pred EECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcC
Confidence 899999999999888764221 00 000 012388999999999999999988899
Q ss_pred CeeEEEEeecccceeeecCeEEEeeCCceeeeeeeccccccccccccCCCCccchhhhhcCCCc
Q psy9590 54 SRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKK 117 (350)
Q Consensus 54 ~rkvilatniaets~ti~~i~~viD~g~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~ 117 (350)
.+||++|||++|++|++|++++|||+ .++||++++.. ..|+|.+...|+.+++|+..
T Consensus 338 ~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g 394 (715)
T 2va8_A 338 KIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPG 394 (715)
T ss_dssp CSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTT
T ss_pred CCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCC
Confidence 99999999999999999999999997 57899888765 67889888888888887643
No 96
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.01 E-value=8.5e-11 Score=106.22 Aligned_cols=117 Identities=14% Similarity=0.044 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCC----CcEE-EEcCCcchhhhhHHHHHHHHhccc-cc--c
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTA----RGKI-GCTQPRRVAAMSVAKRVAEEFGCR-LG--Q 210 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~----~G~i-~~~~~~~i~~~~~~~~v~~~~~~~-~~--~ 210 (350)
.+.+++..++++|++++|+|+|||||||+++++.+..+... ...+ .+.+..-...++..+.+....+.. .. .
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~ 92 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPD 92 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGG
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcc
Confidence 35678889999999999999999999999999998654210 0011 222221111123333322221110 00 0
Q ss_pred -----hhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 211 -----EVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 211 -----~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
.+...+... .......+..+|+|++||+.+ ++++.+|+++|+|||
T Consensus 93 ~~~~~~~~~~L~~l-~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 93 AFDNDLMHRTLKNI-VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp GBCHHHHHHHHHHH-HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred cccHHHHHHHHHHH-HCCCCeecccccccccCccCc-eEEecCCCEEEEeCc
Confidence 011111111 112235667899999999977 588899999999998
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.00 E-value=1.6e-10 Score=105.62 Aligned_cols=92 Identities=18% Similarity=0.141 Sum_probs=59.1
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFE 219 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~ 219 (350)
..+++. +++|++++|+|||||||||+++.++++..+..+|+|..... .+.+.. . ....+...
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~~---------~----~~~~~v~q-- 77 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVF---------K----HKKSIVNQ-- 77 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCC---------C----CSSSEEEE--
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC-cceeec---------C----CcceeeeH--
Confidence 455565 89999999999999999999999999874333788865321 111110 0 00000000
Q ss_pred cCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 220 DCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 220 ~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
..+ .+.. ...+++|+++|..+|++|++|||
T Consensus 78 ------~~~-gl~~-~~l~~~la~aL~~~p~illlDEp 107 (261)
T 2eyu_A 78 ------REV-GEDT-KSFADALRAALREDPDVIFVGEM 107 (261)
T ss_dssp ------EEB-TTTB-SCHHHHHHHHHHHCCSEEEESCC
T ss_pred ------HHh-CCCH-HHHHHHHHHHHhhCCCEEEeCCC
Confidence 000 0000 12389999999999999999999
No 98
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.98 E-value=5e-10 Score=109.61 Aligned_cols=187 Identities=17% Similarity=0.197 Sum_probs=110.8
Q ss_pred cCCEEEEeCCCCCCHHHHH-HHHH-hhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhc-ccCCCccc
Q psy9590 150 DNQILIVIGETGSGKTTQI-TQYL-AEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRF-EDCTSSET 226 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll-~~l~-~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~-~~~~~~~~ 226 (350)
+|+.+.+.||+|||||... ..++ ... ..++.+.+..|.+..+.. +...+. +..+++.... ........
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~--~~g~~~lvl~Pt~~La~Q----~~~~~~---~~~v~~~~~~~~~~~~~~~ 71 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV--KKRLRTVILAPTRVVASE----MYEALR---GEPIRYMTPAVQSERTGNE 71 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH--HTTCCEEEEESSHHHHHH----HHHHTT---TSCEEEC---------CCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--hCCCCEEEECcHHHHHHH----HHHHhC---CCeEEEEecCccccCCCCc
Confidence 3788999999999999963 3333 222 223456665676654333 333332 1223322221 11222345
Q ss_pred cccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhHHHhh-hh--------------------cCcccce
Q psy9590 227 LIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKF-KK--------------------NQRLEPL 285 (350)
Q Consensus 227 ~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~~~~~-~~--------------------~~~v~~~ 285 (350)
.+..++.|...+..+....+.+.+++|+||.|+.+...+.....++-... .+ ..++...
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~i~~~ 151 (431)
T 2v6i_A 72 IVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPSNSPIIDE 151 (431)
T ss_dssp SEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCCSSCCEEE
T ss_pred eEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCCCCceeec
Confidence 66778999888877777779999999999999986555544433311100 00 1111111
Q ss_pred eccCCcc--------------c---cc-------------------------------------ceeEEEEEeccccccc
Q psy9590 286 YNKYEEP--------------N---AW-------------------------------------RISRVVIATNIAETSL 311 (350)
Q Consensus 286 ~~~~~~~--------------~---~~-------------------------------------~~~~vi~sT~iae~s~ 311 (350)
....+.. . .| +..+|++||+++|.++
T Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~v~e~Gi 231 (431)
T 2v6i_A 152 ETRIPDKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTDISEMGA 231 (431)
T ss_dssp ECCCCSSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECGGGGTSC
T ss_pred cccCCHHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEECchHHcCc
Confidence 0000000 0 00 1168999999999999
Q ss_pred ccCCEEEEEeCCeeeeEeeecCCCcceeeEeecccC
Q psy9590 312 TIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQD 347 (350)
Q Consensus 312 ti~d~~~vid~G~~~~~~~~~~~~~~~l~~~~is~~ 347 (350)
.++ +.+|||+|..+.+.|| ..++......|.|.+
T Consensus 232 Dip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~ 265 (431)
T 2v6i_A 232 NFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPA 265 (431)
T ss_dssp CCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHH
T ss_pred ccC-CcEEEecCccccceec-ccceeecccccCCHH
Confidence 998 9999999999999998 566666666666643
No 99
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.97 E-value=2.2e-11 Score=111.95 Aligned_cols=100 Identities=10% Similarity=0.109 Sum_probs=53.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--------cchhhhhHHHHHHHHhcccccchhhhhhhcc-----
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--------RRVAAMSVAKRVAEEFGCRLGQEVGYTIRFE----- 219 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--------~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~----- 219 (350)
.++|+|||||||||++++++|... +.+|.+.+... +.+++......+. ......+.+++.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~--~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIPKTVEIKAIGHVIEEGGVK--MKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----C--CEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccCcceeeeeeEEEeecCCCc--CCceEEechhhhhhcccHHHH
Confidence 479999999999999999999884 44677654211 1122222111110 0111122222211100
Q ss_pred -------cCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCC
Q psy9590 220 -------DCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258 (350)
Q Consensus 220 -------~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEph 258 (350)
.....+....+||+||+||+.+||+++. ++++|||-
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~ 123 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTG 123 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCS
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCC
Confidence 0001123456899999999999999875 99999993
No 100
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.97 E-value=5.7e-10 Score=93.25 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=56.5
Q ss_pred cccccccChhHHHHHHHH------hhcCCCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---ccc
Q psy9590 225 ETLIKYMTDGMLLRECLV------DLDLNNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAW 295 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia------~all~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~ 295 (350)
++.+..|||||+||++|| ++++.+|+++||||| +..+++........ ...
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEP---------------------t~~LD~~~~~~l~~~l~~~~ 110 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEP---------------------TPYLDEERRRKLITIMERYL 110 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESC---------------------SCTTCHHHHHHHHHHHHHTG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECC---------------------CccCCHHHHHHHHHHHHHHH
Confidence 466789999999999876 899999999999999 33333332221111 000
Q ss_pred -ceeEEEEEecccccccccCCEEEEE--eCCeee
Q psy9590 296 -RISRVVIATNIAETSLTIDGIFYVV--DPGFVK 326 (350)
Q Consensus 296 -~~~~vi~sT~iae~s~ti~d~~~vi--d~G~~~ 326 (350)
.-++||++||+.+ ...++|.++++ +.|..+
T Consensus 111 ~~~~tiiivsH~~~-~~~~~d~ii~l~~~~g~s~ 143 (148)
T 1f2t_B 111 KKIPQVILVSHDEE-LKDAADHVIRISLENGSSK 143 (148)
T ss_dssp GGSSEEEEEESCGG-GGGGCSEEEEEEEETTEEE
T ss_pred ccCCEEEEEEChHH-HHHhCCEEEEEEcCCCeEE
Confidence 0146999999985 56899999999 556553
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.96 E-value=7.3e-11 Score=124.75 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=54.4
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccC-C
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDC-T 222 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~-~ 222 (350)
+...+++|++++|+|||||||||+++++.+..-....|.. -|..-+.+ .. +...+...+. .
T Consensus 666 vsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~---vpa~~~~i------------~~---~d~i~~~ig~~d 727 (918)
T 3thx_B 666 TDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY---VPAEEATI------------GI---VDGIFTRMGAAD 727 (918)
T ss_dssp EEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC---BSSSEEEE------------EC---CSEEEEEC----
T ss_pred ccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc---ccchhhhh------------hH---HHHHHHhCChHH
Confidence 3345678999999999999999999988653210000000 00000000 00 0000000011 1
Q ss_pred CccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 223 SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 223 ~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
........+|+||+++..++++ +.+|+++|||||
T Consensus 728 ~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP 761 (918)
T 3thx_B 728 NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDEL 761 (918)
T ss_dssp ------CCHHHHHHHHHHHHHH-CCTTCEEEEEST
T ss_pred HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCC
Confidence 1123455789999999999988 899999999999
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.96 E-value=1.1e-10 Score=121.42 Aligned_cols=86 Identities=17% Similarity=0.142 Sum_probs=55.5
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhccc-CCCcccccc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFED-CTSSETLIK 229 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~-~~~~~~~i~ 229 (350)
|++++|+|||||||||+++++.+....+..|.+...... .+++...... ....+....
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~---------------------~i~~v~~i~~~~~~~d~l~~ 634 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEA---------------------HLPLFDGIYTRIGASDDLAG 634 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEE---------------------EECCCSEEEEECCC------
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhcc---------------------ceeeHHHhhccCCHHHHHHh
Confidence 899999999999999999999987532334433210000 1111111111 111122333
Q ss_pred ccChhHHHHHHHHhhc--CCCCcEEEEcCC
Q psy9590 230 YMTDGMLLRECLVDLD--LNNYSVIMLDEA 257 (350)
Q Consensus 230 ~lS~G~~qr~~ia~al--l~~~~viIlDEp 257 (350)
.+|+|+++++.+++++ +.+|+++|||||
T Consensus 635 g~S~~~~e~~~la~il~~a~~p~LlLLDEp 664 (765)
T 1ewq_A 635 GKSTFMVEMEEVALILKEATENSLVLLDEV 664 (765)
T ss_dssp CCSHHHHHHHHHHHHHHHCCTTEEEEEEST
T ss_pred cccHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 5799999999999999 999999999999
No 103
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.91 E-value=1.1e-09 Score=107.51 Aligned_cols=190 Identities=19% Similarity=0.152 Sum_probs=107.0
Q ss_pred HhhcCCEEEEeCCCCCCHHHHH--HHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcc-cCCC
Q psy9590 147 AVSDNQILIVIGETGSGKTTQI--TQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFE-DCTS 223 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll--~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~-~~~~ 223 (350)
.+.+|+-+.+.||+|||||+.. +.+.... ..++.+.+..|.+..+....+.+. +. .+.+..... ....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~--~~~~~~lil~Ptr~La~Q~~~~l~---~~----~v~~~~~~~~~v~T 74 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECA--RRRLRTLVLAPTRVVLSEMKEAFH---GL----DVKFHTQAFSAHGS 74 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHH--HTTCCEEEEESSHHHHHHHHHHTT---TS----CEEEESSCCCCCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHH--hcCCeEEEEcchHHHHHHHHHHHh---cC----CeEEecccceeccC
Confidence 3567899999999999999963 3332222 113355555676554433332221 11 122211111 1223
Q ss_pred ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChhH-HHh-------------------hhh-cCcc
Q psy9590 224 SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPTK-LSK-------------------FKK-NQRL 282 (350)
Q Consensus 224 ~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l~-~~~-------------------~~~-~~~v 282 (350)
....+..+..|...+..+....+.+.+++|+||.|+.+...++.++.+. ... +.. ..++
T Consensus 75 p~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~ 154 (440)
T 1yks_A 75 GREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSDEFPHSNGEI 154 (440)
T ss_dssp SSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCE
T ss_pred CccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhcCCCe
Confidence 3455567777877666666666899999999999998544444333321 000 000 0000
Q ss_pred cceeccCCcc-----------------ccc-------------------------------------ceeEEEEEecccc
Q psy9590 283 EPLYNKYEEP-----------------NAW-------------------------------------RISRVVIATNIAE 308 (350)
Q Consensus 283 ~~~~~~~~~~-----------------~~~-------------------------------------~~~~vi~sT~iae 308 (350)
.......+.. ..| +..+|++||+++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v~e 234 (440)
T 1yks_A 155 EDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAE 234 (440)
T ss_dssp EEEECCCCSSCCSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESSSTT
T ss_pred eEeeeccChHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECChhh
Confidence 0000000000 000 1158999999999
Q ss_pred cccccCCEEEEEeCCeeeeEeee-cCCCcceeeEeeccc
Q psy9590 309 TSLTIDGIFYVVDPGFVKQKVYN-SKTGMDSLVVTPISQ 346 (350)
Q Consensus 309 ~s~ti~d~~~vid~G~~~~~~~~-~~~~~~~l~~~~is~ 346 (350)
.++.++ +.+|||+|+.+.++|+ +..++...-..|.|.
T Consensus 235 ~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~ 272 (440)
T 1yks_A 235 MGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISA 272 (440)
T ss_dssp CCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCH
T ss_pred eeeccC-ceEEEeCCccceeeecccccceeeccccccCH
Confidence 999999 9999999999988873 444454444555543
No 104
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.86 E-value=1.5e-09 Score=111.59 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHH---HHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeC
Q psy9590 3 KGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSE---MQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 79 (350)
Q Consensus 3 ~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~---~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~ 79 (350)
...++++.+++.|.+. .+.+.++||+|+.+ +|.+.|.. ++|.+||++|||++|++|+| +|++|||.
T Consensus 328 ~s~~~ie~la~~L~~~---------g~~v~~lHG~L~~~~R~~~~~~F~~-~~g~~~VLVATdi~e~GlDi-~v~~VI~~ 396 (677)
T 3rc3_A 328 FSKNDIYSVSRQIEIR---------GLESAVIYGSLPPGTKLAQAKKFND-PNDPCKILVATDAIGMGLNL-SIRRIIFY 396 (677)
T ss_dssp SSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHC-TTSSCCEEEECGGGGSSCCC-CBSEEEES
T ss_pred cCHHHHHHHHHHHHhc---------CCCeeeeeccCCHHHHHHHHHHHHc-cCCCeEEEEeCcHHHCCcCc-CccEEEEC
Confidence 3467888888877642 35688999999999 56677876 56889999999999999999 99999999
Q ss_pred CceeeeeeeccccccccccccCCCCccchhhhhcCCCc
Q psy9590 80 GFVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKK 117 (350)
Q Consensus 80 g~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~ 117 (350)
|+.|. .||++.+. ...|+|.+...++.+++|+..
T Consensus 397 ~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 397 SLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp CSBC---------------CBCCHHHHHHHHTTBTCTT
T ss_pred Ccccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCC
Confidence 99998 89998444 267899888888888887654
No 105
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.84 E-value=5.9e-10 Score=119.40 Aligned_cols=138 Identities=14% Similarity=0.048 Sum_probs=74.8
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcCC-CCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcccccc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAGF-TARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIK 229 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~~-~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i~ 229 (350)
|++++|+|||||||||+++++ |+... ..-|......+..+. ..+.+-. ++...........
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~~l~---------------v~d~I~~--rig~~d~~~~~~s 850 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVCRLT---------------PIDRVFT--RLGASDRIMSGES 850 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEEEEC---------------CCSBEEE--ECC---------C
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcCCCC---------------HHHHHHH--HcCCHHHHhhchh
Confidence 899999999999999999999 76421 011211111110000 0011100 0000001112334
Q ss_pred ccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccC---hhHHHhhhhcCcccceeccCCcccccceeEEEEEecc
Q psy9590 230 YMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFD---PTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATNI 306 (350)
Q Consensus 230 ~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~---~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~sT~i 306 (350)
.++++|.+ ++++++++.+|+++||||| -| -+|..-+ ...+.+++. + ... .++|++||+
T Consensus 851 tf~~em~~-~a~al~la~~~sLlLLDEp-~~--Gtd~~dg~~~~~~il~~L~---------~---~~g---~~vl~~TH~ 911 (1022)
T 2o8b_B 851 TFFVELSE-TASILMHATAHSLVLVDEL-GR--GTATFDGTAIANAVVKELA---------E---TIK---CRTLFSTHY 911 (1022)
T ss_dssp HHHHHHHH-HHHHHHHCCTTCEEEEECT-TT--TSCHHHHHHHHHHHHHHHH---------H---TSC---CEEEEECCC
T ss_pred hhHHHHHH-HHHHHHhCCCCcEEEEECC-CC--CCChHHHHHHHHHHHHHHH---------h---cCC---CEEEEEeCC
Confidence 57777765 8999999999999999999 11 1111100 001111110 0 001 359999999
Q ss_pred cccccccCCEEEEEeCCeee
Q psy9590 307 AETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 307 ae~s~ti~d~~~vid~G~~~ 326 (350)
.|....++|...|++ |.+.
T Consensus 912 ~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 912 HSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp HHHHHHTSSCSSEEE-EEEE
T ss_pred HHHHHHhCCcceeec-CeEE
Confidence 999888888887775 5553
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.83 E-value=2.2e-09 Score=102.15 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=66.0
Q ss_pred HHHHHH-HHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC--CCC---CcE-EEEcCCcchhhhhHHHHHHHHhcccccchh
Q psy9590 140 LKHELI-KAVSDNQILIVIGETGSGKTTQITQYLAEAG--FTA---RGK-IGCTQPRRVAAMSVAKRVAEEFGCRLGQEV 212 (350)
Q Consensus 140 ~~~~i~-~~i~~g~v~~liG~nGsGKSTll~~l~~~~~--~~~---~G~-i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v 212 (350)
..+.++ ..++.|++++|+|+|||||||++.++++... +.. +|. +.+.....+ .......+++.++.... .+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~v 196 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EV 196 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-HH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-HH
Confidence 345555 5789999999999999999999999999862 222 367 554322111 11111223333322211 22
Q ss_pred hhhhhcccCCCccccccccChhHHHHHHHHhhcC-------CCCcEEEEcCC
Q psy9590 213 GYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDL-------NNYSVIMLDEA 257 (350)
Q Consensus 213 ~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all-------~~~~viIlDEp 257 (350)
...+.+... +-+.++.+++.++++++ .+|++||+|||
T Consensus 197 ~~ni~~~~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 197 LKHIYVARA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp GGGEEEEEC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred hhCEEEEec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 111111111 12577888888888887 78999999999
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.83 E-value=4.6e-11 Score=104.05 Aligned_cols=100 Identities=17% Similarity=0.101 Sum_probs=55.2
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccc---hhhhhhhccc-CC----
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQ---EVGYTIRFED-CT---- 222 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~---~v~~~~~~~~-~~---- 222 (350)
|++++|+|+|||||||+++++++... .+| +.+. ..+...... .....+..... ...+.-++.. ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~--~~G-i~~~-g~~~~~~~~---~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~ 73 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK--SSG-VPVD-GFYTEEVRQ---GGRRIGFDVVTLSGTRGPLSRVGLEPPPGKR 73 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH--HTT-CCCE-EEECCEEET---TSSEEEEEEEETTSCEEEEEECCCCCCSSSC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc--cCC-EEEc-CEecchhHh---hhceEEEEEEecccceehhhcccccCCcccc
Confidence 68999999999999999999999884 356 5432 111100000 00000000000 0000000000 00
Q ss_pred --CccccccccChhHHHHH-HHHh---hcCCCCcEEEEcCC
Q psy9590 223 --SSETLIKYMTDGMLLRE-CLVD---LDLNNYSVIMLDEA 257 (350)
Q Consensus 223 --~~~~~i~~lS~G~~qr~-~ia~---all~~~~viIlDEp 257 (350)
...+....+|+|+++++ ++.+ |++.+|+++|+|||
T Consensus 74 ~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~ 114 (189)
T 2i3b_A 74 ECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEI 114 (189)
T ss_dssp CEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCC
T ss_pred ccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCC
Confidence 11233446899999887 4444 68999999999995
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.82 E-value=3.7e-09 Score=100.86 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=53.3
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE-cCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcc
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC-TQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSE 225 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~-~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~ 225 (350)
...+|++++|+|||||||||+++.+++......+|.|.. .+|...... ....+. ......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~---------------~~~~~v-~q~~~~--- 179 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE---------------SKKCLV-NQREVH--- 179 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC---------------CSSSEE-EEEEBT---
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh---------------ccccce-eeeeec---
Confidence 456788999999999999999999999875444566543 233211100 000000 000000
Q ss_pred ccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 226 TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
...++-. .+|+++|.++|++|++|||
T Consensus 180 --~~~~~~~----~~La~aL~~~PdvillDEp 205 (356)
T 3jvv_A 180 --RDTLGFS----EALRSALREDPDIILVGEM 205 (356)
T ss_dssp --TTBSCHH----HHHHHHTTSCCSEEEESCC
T ss_pred --cccCCHH----HHHHHHhhhCcCEEecCCC
Confidence 0012221 2899999999999999999
No 109
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.82 E-value=2.3e-09 Score=110.45 Aligned_cols=117 Identities=21% Similarity=0.245 Sum_probs=71.4
Q ss_pred HHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcc-cCC
Q psy9590 146 KAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFE-DCT 222 (350)
Q Consensus 146 ~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~-~~~ 222 (350)
..+..|+.+.+.|++|||||+. ++++.... ..++.+.+..|.+..+....+.+. +. .+++..... ...
T Consensus 236 ~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~--~~~~~~lilaPTr~La~Q~~~~l~---~~----~i~~~~~~l~~v~ 306 (673)
T 2wv9_A 236 EMLKKRQLTVLDLHPGAGKTRRILPQIIKDAI--QKRLRTAVLAPTRVVAAEMAEALR---GL----PVRYLTPAVQREH 306 (673)
T ss_dssp GGGSTTCEEEECCCTTTTTTTTHHHHHHHHHH--HTTCCEEEEESSHHHHHHHHHHTT---TS----CCEECCC---CCC
T ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--hCCCcEEEEccHHHHHHHHHHHHh---cC----CeeeecccccccC
Confidence 3455899999999999999996 33332222 123456555676654443332222 11 122221111 122
Q ss_pred CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccccccccccChh
Q psy9590 223 SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLFDPT 271 (350)
Q Consensus 223 ~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~~~~d~ll~~l 271 (350)
...+.+..++.|...+..+....+.+.+++|+||.|+.+...+..++.+
T Consensus 307 tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l 355 (673)
T 2wv9_A 307 SGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYI 355 (673)
T ss_dssp CSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHH
Confidence 3345667788888777777766789999999999999976665554444
No 110
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.81 E-value=3.3e-09 Score=106.31 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=39.6
Q ss_pred HHHHHHHH-HhhcCCEEEEeCCCCCCHHHHHHH--HHhhcCCCCCcEEEEcC
Q psy9590 139 KLKHELIK-AVSDNQILIVIGETGSGKTTQITQ--YLAEAGFTARGKIGCTQ 187 (350)
Q Consensus 139 ~~~~~i~~-~i~~g~v~~liG~nGsGKSTll~~--l~~~~~~~~~G~i~~~~ 187 (350)
...++++. .+.+|++++|+|+|||||||++++ +.+...+ .+|.+.+..
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~g 76 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVTF 76 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEES
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 35778888 999999999999999999999999 5577633 478887753
No 111
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.79 E-value=2e-09 Score=111.48 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCC----------C-----------CeEEEEeCCCCCHHHHHcccccCCCCCeeEEE
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDV----------P-----------ELIILPVYSALPSEMQTRIFEAAPPGSRKVVI 59 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~----------~-----------~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvil 59 (350)
|+|+.++++.+++.|.+......... . ...+.++||+|+.++|..+++..+.|.+||++
T Consensus 248 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlv 327 (702)
T 2p6r_A 248 FESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVV 327 (702)
T ss_dssp ECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEE
T ss_pred EcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 89999999999999887643211000 0 12367899999999999999988899999999
Q ss_pred EeecccceeeecCeEEEeeCCceeeeeeeccccccccccccCCCCccchhhhhcCCCc
Q psy9590 60 ATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGKK 117 (350)
Q Consensus 60 atniaets~ti~~i~~viD~g~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k~ 117 (350)
|||++|++|++|++++|||+ ...|| |. ..|.|.+...|+.+++|+..
T Consensus 328 aT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g 374 (702)
T 2p6r_A 328 ATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPG 374 (702)
T ss_dssp ECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTT
T ss_pred ECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCC
Confidence 99999999999999999997 57787 22 56788877888888887643
No 112
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.78 E-value=3.5e-09 Score=93.60 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|+++.++++.+.+.|.+. .+.+.++||+++.++|.++++.-..|..+|++|||+|+.+++||+|.+||+.+
T Consensus 37 F~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~ 107 (212)
T 3eaq_A 37 FTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYR 107 (212)
T ss_dssp ECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESS
T ss_pred EeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECC
Confidence 788999999888877653 35688999999999999999888889999999999999999999999999987
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
+.
T Consensus 108 ~p 109 (212)
T 3eaq_A 108 LP 109 (212)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 113
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.77 E-value=1.1e-08 Score=93.91 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=58.8
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC---------CCcEEE-EcCCcchhhhhHHHHHHHHhccccc-chhhhh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFT---------ARGKIG-CTQPRRVAAMSVAKRVAEEFGCRLG-QEVGYT 215 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~---------~~G~i~-~~~~~~i~~~~~~~~v~~~~~~~~~-~~v~~~ 215 (350)
-+.+|++++|+|+|||||||++.++++..... ..+.+. ++..... .....++. ..+.... ......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~-~~g~~~~~~~~~~~ 102 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLH-ALGAHLSAEERQAV 102 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHH-HHHTTSCHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH--HHHHHHHH-HHHhhcChhhhhhc
Confidence 47899999999999999999999999754211 123332 2221111 11111211 1121110 000000
Q ss_pred hhcccCC-CccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 216 IRFEDCT-SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 216 ~~~~~~~-~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
....... ..+..+..+|+|+++++ ++++.+|++||+|||
T Consensus 103 ~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~ 142 (279)
T 1nlf_A 103 ADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTL 142 (279)
T ss_dssp HHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECG
T ss_pred cCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCH
Confidence 1111111 12345677999997765 567789999999999
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.75 E-value=3.7e-08 Score=86.40 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=59.3
Q ss_pred HHHHHHH-HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEE-EEcCCcchhhhhHHHHHHHHhcccccchhhhhhh
Q psy9590 140 LKHELIK-AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKI-GCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIR 217 (350)
Q Consensus 140 ~~~~i~~-~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i-~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~ 217 (350)
..++++. -+.+|++++|+|+|||||||++.++++ . . ++.+ .+.....+..... ..+....+.... .+ ..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~--~-~~~v~~i~~~~~~~~~~~-~~~~~~~~~~~~-~~---~~ 78 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-L--S-GKKVAYVDTEGGFSPERL-VQMAETRGLNPE-EA---LS 78 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-H--H-CSEEEEEESSCCCCHHHH-HHHHHTTTCCHH-HH---HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-H--c-CCcEEEEECCCCCCHHHH-HHHHHhcCCChH-HH---hh
Confidence 3556665 788999999999999999999999998 2 2 3343 3332221111111 111211111110 00 00
Q ss_pred cccCCCccccccccChhH--HHHHHHHhhcCCC-CcEEEEcCCC
Q psy9590 218 FEDCTSSETLIKYMTDGM--LLRECLVDLDLNN-YSVIMLDEAH 258 (350)
Q Consensus 218 ~~~~~~~~~~i~~lS~G~--~qr~~ia~all~~-~~viIlDEph 258 (350)
+-.+..+++++ ++++..+++++.+ |++||+|||.
T Consensus 79 -------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 79 -------RFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp -------HEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCC
T ss_pred -------cEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcH
Confidence 01122344553 4566777888876 9999999993
No 115
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.74 E-value=3.8e-09 Score=98.48 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|+++.++++.+++.|.+ ..+.+.++||+|+.++|.++++.-..|.++|++|||+|+++++||+|.+||+.+
T Consensus 34 F~~t~~~~~~l~~~L~~---------~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 34 FTRTKAETEEIAQGLLR---------LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYR 104 (300)
T ss_dssp ECSSHHHHHHHHHHHHT---------TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESS
T ss_pred EECCHHHHHHHHHHHHh---------CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcC
Confidence 78999999888777753 146789999999999999999888889999999999999999999999999988
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
+.
T Consensus 105 ~p 106 (300)
T 3i32_A 105 MP 106 (300)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 116
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.74 E-value=6.8e-10 Score=116.19 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=24.8
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
++|++++|+|||||||||+++++.+..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 578999999999999999999998864
No 117
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.71 E-value=3.6e-09 Score=100.62 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
.+.+.+ ..+.+|++++|+|+|||||||+++++++... +..|.+..
T Consensus 60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-~~~g~i~~ 104 (347)
T 2obl_A 60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-ADIIVLAL 104 (347)
T ss_dssp HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEE
T ss_pred EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-CCEEEEEE
Confidence 356777 8999999999999999999999999999984 44666655
No 118
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.70 E-value=1.4e-08 Score=104.38 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=31.1
Q ss_pred eEEEEEecccccccccCCEEEEEeCCeeeeEeeecCCCcceeeEeecccCC
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDG 348 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vid~G~~~~~~~~~~~~~~~l~~~~is~~~ 348 (350)
.+|++||+++|.+++| ++.+||+.|..|. .||+..+. ...|+|.++
T Consensus 373 ~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~ 418 (677)
T 3rc3_A 373 CKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQ 418 (677)
T ss_dssp CCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHH
T ss_pred eEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHH
Confidence 5899999999999999 9999999999987 88887443 255776553
No 119
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.69 E-value=3.4e-09 Score=103.79 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT 186 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~ 186 (350)
.+.+++ ..+.+|++++|+|+|||||||+++++++... +..|.+.+.
T Consensus 146 ~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-~~~G~i~~~ 191 (438)
T 2dpy_A 146 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-ADVIVVGLI 191 (438)
T ss_dssp HHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEE
T ss_pred eEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEe
Confidence 467888 9999999999999999999999999999984 446777654
No 120
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.69 E-value=4.6e-08 Score=91.28 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=60.4
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC--cchhhhhHHHHHHHHhcccc-------------cchhhh
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP--RRVAAMSVAKRVAEEFGCRL-------------GQEVGY 214 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~--~~i~~~~~~~~v~~~~~~~~-------------~~~v~~ 214 (350)
+|++++|+|||||||||+++.+.+... +.+|+|.+... .+.++......++...+... .+.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 589999999999999999999999985 45788866422 22222211111111111100 000100
Q ss_pred ------hhhcccCCCc-cccccccChhHHHHHHHHhhcCCCCc--EEEEcC
Q psy9590 215 ------TIRFEDCTSS-ETLIKYMTDGMLLRECLVDLDLNNYS--VIMLDE 256 (350)
Q Consensus 215 ------~~~~~~~~~~-~~~i~~lS~G~~qr~~ia~all~~~~--viIlDE 256 (350)
...+.+.... ......++...+||+++|++++.+|+ ++.||.
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa 230 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA 230 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEET
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcH
Confidence 0001111111 12223455566899999999999999 566664
No 121
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.68 E-value=1.2e-08 Score=104.44 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|+++.++++.+.+.|.+. .+.+.++||+|+.++ | ..+.++|++|||+||.+|.|| |++|||+|
T Consensus 402 Fv~Tr~~ae~la~~L~~~---------g~~v~~lHG~l~q~e----r---~~~~~~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 402 FCHSKKKCDELAAKLSGL---------GINAVAYYRGLDVSV----I---PTIGDVVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp ECSCHHHHHHHHHHHHTT---------TCCEEEECTTSCGGG----S---CSSSCEEEEECTTHHHHCCCC-BSEEEECC
T ss_pred EeCCHHHHHHHHHHHHhC---------CCcEEEecCCCCHHH----H---HhCCCcEEEECChHHccCCCC-CcEEEecC
Confidence 788999999888877532 366889999999764 3 235579999999999999997 99999999
Q ss_pred ceeeee----eeccccccccccccCCCCccchhhhhcCC
Q psy9590 81 FVKQKV----YNSKTGMDSLVVTPISQDLPEWKKHVIGG 115 (350)
Q Consensus 81 ~~k~~~----~~~~~~~~~l~~~~iSk~~~~~rr~~~~~ 115 (350)
+.++.+ |||+.++..+ ..|.|.+.-.+|.++.|+
T Consensus 465 l~~~~ViNyDydP~~gl~~~-~~P~s~~syiQRiGRtGR 502 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETT-TVPQDAVSRSQRRGRTGR 502 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEE-EEECBHHHHHHHHTTBCS
T ss_pred cccccccccccccccccccc-cCcCCHHHHHHHhccCCC
Confidence 999887 6677888764 678888777888888876
No 122
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.66 E-value=1.5e-08 Score=99.79 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=81.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|+++.++++.+.+.|.+. .+.+.+|||. ++.++++.-..|..+|++|||+||.+|.||+ .+|||+|
T Consensus 196 F~~s~~~~~~l~~~L~~~---------g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 196 FVASVKMGNEIAMCLQRA---------GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp ECSCHHHHHHHHHHHHHT---------TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECC
T ss_pred EeCChHHHHHHHHHHHhc---------CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECC
Confidence 889999999888877642 3567889984 6778888888999999999999999999999 9999999
Q ss_pred ceeeeeeecccccccccc---ccCCCCccchhhhhcCCC
Q psy9590 81 FVKQKVYNSKTGMDSLVV---TPISQDLPEWKKHVIGGK 116 (350)
Q Consensus 81 ~~k~~~~~~~~~~~~l~~---~~iSk~~~~~rr~~~~~k 116 (350)
+.+.++|+ ..+.+.+.. .|.|.+.-.++.++.|+.
T Consensus 262 ~~~~~~~~-~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~ 299 (459)
T 2z83_A 262 KSVKPTIL-EEGEGRVILGNPSPITSASAAQRRGRVGRN 299 (459)
T ss_dssp EECCEEEE-CSSSCEEEECSCEECCHHHHHHHHTTSSCC
T ss_pred cccccccc-cccccccccccCCCCCHHHHHHhccccCCC
Confidence 99999987 456666655 789988788888888754
No 123
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.64 E-value=3.5e-08 Score=92.13 Aligned_cols=90 Identities=20% Similarity=0.183 Sum_probs=60.4
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc--CCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCccc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT--QPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSET 226 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~--~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~ 226 (350)
.++++++++|+|||||||++..+.+.... .+|++.+. +..+.++......++...+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~------------------- 161 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLKIWGERVGAT------------------- 161 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCE-------------------
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccHHHHHHHHHHHHHcCCc-------------------
Confidence 45789999999999999999999988743 36666442 344443322212222111110
Q ss_pred cccccChhHHHHH---HHHhhcCCCCcEEEEcCCC
Q psy9590 227 LIKYMTDGMLLRE---CLVDLDLNNYSVIMLDEAH 258 (350)
Q Consensus 227 ~i~~lS~G~~qr~---~ia~all~~~~viIlDEph 258 (350)
.+...|+|+.+++ .+++++..+|+++|+|||-
T Consensus 162 ~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 162 VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 0123567888887 7888999999999999994
No 124
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.61 E-value=7.3e-08 Score=92.04 Aligned_cols=98 Identities=22% Similarity=0.142 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhccc
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFED 220 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~ 220 (350)
.+.+...+++|++++|+|+|||||||+++.++++.. +..|.|.+..+..+... .....+++...
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-~~~g~I~ie~~~e~~~~------------~~~~~v~~v~~--- 228 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-FDQRLITIEDVPELFLP------------DHPNHVHLFYP--- 228 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-TTSCEEEEESSSCCCCT------------TCSSEEEEECC---
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-CCceEEEECCccccCcc------------ccCCEEEEeec---
Confidence 478889999999999999999999999999999984 45889988654322100 00111221110
Q ss_pred CCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCC
Q psy9590 221 CTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258 (350)
Q Consensus 221 ~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEph 258 (350)
.+ ....+++++.++..++.++..+|+.+++||+-
T Consensus 229 ---q~-~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r 262 (361)
T 2gza_A 229 ---SE-AKEEENAPVTAATLLRSCLRMKPTRILLAELR 262 (361)
T ss_dssp --------------CCHHHHHHHHTTSCCSEEEESCCC
T ss_pred ---Cc-cccccccccCHHHHHHHHHhcCCCEEEEcCch
Confidence 00 00001345567888899999999999999983
No 125
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.60 E-value=1.4e-08 Score=105.50 Aligned_cols=106 Identities=15% Similarity=0.052 Sum_probs=82.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCC------------CC------------CCeEEEEeCCCCCHHHHHcccccCCCCCee
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGP------------DV------------PELIILPVYSALPSEMQTRIFEAAPPGSRK 56 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~------------~~------------~~~~~~pl~~~l~~~~q~~~~~~~~~~~rk 56 (350)
|+++.++++.+++.|.+....... +. -..-+.++||+|+.++|..+++.-+.|.+|
T Consensus 243 F~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~ 322 (720)
T 2zj8_A 243 FVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK 322 (720)
T ss_dssp ECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSC
T ss_pred EecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCe
Confidence 899999999999988765432100 00 011388999999999999999988899999
Q ss_pred EEEEeecccceeeecCeEEEeeCCceeeeeeeccccccccccccCCCCccchhhhhcCCC
Q psy9590 57 VVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGK 116 (350)
Q Consensus 57 vilatniaets~ti~~i~~viD~g~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k 116 (350)
|++|||++|++|++|++++|||.+ ..|| ..| ..|.|.+.-.|+.+++|+.
T Consensus 323 vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~ 372 (720)
T 2zj8_A 323 AVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRP 372 (720)
T ss_dssp EEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCT
T ss_pred EEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCC
Confidence 999999999999999999999966 5676 223 2567776677778877764
No 126
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.59 E-value=3.8e-08 Score=96.73 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|+++.++++.+.+.|.+. .+.+.++|+.+. .++++.-..|..+|++||++||.++.||+ .+|||+|
T Consensus 194 F~~s~~~a~~l~~~L~~~---------g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 194 FVPSIKAGNDIANCLRKS---------GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPR 259 (451)
T ss_dssp ECSSHHHHHHHHHHHHTT---------TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECC
T ss_pred EcCCHHHHHHHHHHHHHc---------CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECC
Confidence 789999998887777532 356779998754 45666667899999999999999999999 9999999
Q ss_pred ceeeeeeecccccccccc---ccCCCCccchhhhhcCCC
Q psy9590 81 FVKQKVYNSKTGMDSLVV---TPISQDLPEWKKHVIGGK 116 (350)
Q Consensus 81 ~~k~~~~~~~~~~~~l~~---~~iSk~~~~~rr~~~~~k 116 (350)
+.+.++|| ..+++.+.. .|.|.+.-.++.++.|+.
T Consensus 260 ~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~ 297 (451)
T 2jlq_A 260 RCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRN 297 (451)
T ss_dssp EEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred Cccccccc-ccccceeeecccccCCHHHHHHhccccCCC
Confidence 99999999 778888887 899988788888888754
No 127
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.56 E-value=1e-09 Score=96.32 Aligned_cols=108 Identities=10% Similarity=-0.043 Sum_probs=59.3
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcc--hhhhhHHHHHHHHhccc---ccchhhhhhhcccCC
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRR--VAAMSVAKRVAEEFGCR---LGQEVGYTIRFEDCT 222 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~--i~~~~~~~~v~~~~~~~---~~~~v~~~~~~~~~~ 222 (350)
.++|++++|+|+|||||||+++.+.+..+. .-.+...++.. ....+...+....++.. ....+...+......
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRG 80 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcC
Confidence 467899999999999999999999998642 11222222211 12223322222111111 001111112111111
Q ss_pred -CccccccccChhHH----HHHHHHhhcCCCCcEEEEcCC
Q psy9590 223 -SSETLIKYMTDGML----LRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 223 -~~~~~i~~lS~G~~----qr~~ia~all~~~~viIlDEp 257 (350)
....+...+|+|++ ||+.++++++.++.++++|||
T Consensus 81 ~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~ 120 (211)
T 3asz_A 81 LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKE 120 (211)
T ss_dssp CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHH
T ss_pred CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHH
Confidence 11234567888864 566778888889988888987
No 128
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.54 E-value=5.6e-08 Score=93.23 Aligned_cols=84 Identities=20% Similarity=0.174 Sum_probs=54.6
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE-cCCcchhhhhHHHHHHHHhcccccchhhhhhhc-ccCCCcc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC-TQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRF-EDCTSSE 225 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~-~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~-~~~~~~~ 225 (350)
+.+|++++|+|||||||||+++.+++......+|.|.. .+|.... ....+++.... .+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~---------------~~~~~~~v~Q~~~g~---- 193 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV---------------FKHKKSIVNQREVGE---- 193 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSC---------------CCCSSSEEEEEEBTT----
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhh---------------hccCceEEEeeecCC----
Confidence 78999999999999999999999999874333688844 3332110 00011111000 000
Q ss_pred ccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 226 TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
....+ +..++++|..+|++|++|||
T Consensus 194 -~~~~~------~~~l~~~L~~~pd~illdE~ 218 (372)
T 2ewv_A 194 -DTKSF------ADALRAALREDPDVIFVGEM 218 (372)
T ss_dssp -TBSCS------HHHHHHHTTSCCSEEEESCC
T ss_pred -CHHHH------HHHHHHHhhhCcCEEEECCC
Confidence 01122 46889999999999999999
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.54 E-value=4.2e-08 Score=82.74 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
.+.+.+..++++|++++|+|||||||||+++.+++.. +.+|.|.+
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~ 65 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKS 65 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCC
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEE
Confidence 3567788889999999999999999999999999988 45787765
No 130
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.53 E-value=6.4e-09 Score=99.45 Aligned_cols=114 Identities=14% Similarity=0.058 Sum_probs=64.4
Q ss_pred HHHHHHhhc--CCEEEEeCCCCCCHHHHHHHHHhhcCCCCC----cEEEEc-----CCcchhhhhHHHHHHHHhccc--c
Q psy9590 142 HELIKAVSD--NQILIVIGETGSGKTTQITQYLAEAGFTAR----GKIGCT-----QPRRVAAMSVAKRVAEEFGCR--L 208 (350)
Q Consensus 142 ~~i~~~i~~--g~v~~liG~nGsGKSTll~~l~~~~~~~~~----G~i~~~-----~~~~i~~~~~~~~v~~~~~~~--~ 208 (350)
..+...+.+ ++.++|+|+|||||||+++++++..... . |.+.+. .+........ ..++...... .
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~-~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT-SAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDY 236 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE-EECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC-cchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHH
Confidence 345567888 9999999999999999999999987533 4 555431 1101111111 1222211100 0
Q ss_pred cchhhhhhhcccCCCccccccccChhHHHHHHHHhhc-CCCCcEEEEcCC
Q psy9590 209 GQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLD-LNNYSVIMLDEA 257 (350)
Q Consensus 209 ~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~al-l~~~~viIlDEp 257 (350)
...+...+.+.+.....+.+..+++|++++..+++++ ..+|++++|||+
T Consensus 237 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 237 AVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 0111112222222212233445666777777777765 469999999994
No 131
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.46 E-value=1.3e-06 Score=82.84 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhcC--CEEEEeCCCCCCHHHHHHHHH--hhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhh
Q psy9590 138 YKLKHELIKAVSDN--QILIVIGETGSGKTTQITQYL--AEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVG 213 (350)
Q Consensus 138 ~~~~~~i~~~i~~g--~v~~liG~nGsGKSTll~~l~--~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~ 213 (350)
..++.+.+..+..| .-+.+.+|+|+|||...-..+ .......++.+.+..|.+..+....+.+.... ...+..+.
T Consensus 29 ~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~~~~~ 107 (395)
T 3pey_A 29 SKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMG-KFTKITSQ 107 (395)
T ss_dssp CHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT-TTSCCCEE
T ss_pred CHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHh-cccCeeEE
Confidence 44566667777666 789999999999998653333 22222234566666776654444444443321 11111111
Q ss_pred hhh--hcccCCCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCccc
Q psy9590 214 YTI--RFEDCTSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHERT 261 (350)
Q Consensus 214 ~~~--~~~~~~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEpher~ 261 (350)
... ........+..+...|.|.......... .+.+.+++|+||+|...
T Consensus 108 ~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 108 LIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp EESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred EEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 110 1111112234566778888776654443 37789999999999754
No 132
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.45 E-value=4.6e-07 Score=80.56 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=29.1
Q ss_pred HHHHH-HHhhcCCEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 141 KHELI-KAVSDNQILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 141 ~~~i~-~~i~~g~v~~liG~nGsGKSTll~~l~~~ 174 (350)
.++++ --+.+|++++|+|+|||||||++.++++.
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44455 36889999999999999999999999984
No 133
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.45 E-value=8.3e-08 Score=101.43 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=58.8
Q ss_pred cccccccChhHHHHHHHHhhcCCCCc--EEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc---ccc-ee
Q psy9590 225 ETLIKYMTDGMLLRECLVDLDLNNYS--VIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AWR-IS 298 (350)
Q Consensus 225 ~~~i~~lS~G~~qr~~ia~all~~~~--viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~~-~~ 298 (350)
++.+..|||||+||+.||++|+++|+ +|||||| +-.+++......... ..+ =.
T Consensus 459 ~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEP---------------------T~gLD~~~~~~l~~~L~~L~~~G~ 517 (916)
T 3pih_A 459 SRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEP---------------------TIGLHPRDTERLIKTLKKLRDLGN 517 (916)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECT---------------------TTTCCGGGHHHHHHHHHHTTTTTC
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECC---------------------ccCCCHHHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999887 9999999 334433322211110 000 14
Q ss_pred EEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 299 RVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 299 ~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
+||+.||+.+... .+|.++++ +.|.+.
T Consensus 518 TvivVtHd~~~~~-~aD~ii~lgpgag~~~G~iv 550 (916)
T 3pih_A 518 TVIVVEHDEEVIR-NADHIIDIGPGGGTNGGRVV 550 (916)
T ss_dssp EEEEECCCHHHHH-TCSEEEEEESSSGGGCSEEE
T ss_pred EEEEEeCCHHHHH-hCCEEEEEcCCcccCCCEEE
Confidence 6999999998764 59999999 788774
No 134
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.44 E-value=1e-06 Score=84.17 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhcC--CEEEEeCCCCCCHHHHH--HHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhh
Q psy9590 138 YKLKHELIKAVSDN--QILIVIGETGSGKTTQI--TQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVG 213 (350)
Q Consensus 138 ~~~~~~i~~~i~~g--~v~~liG~nGsGKSTll--~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~ 213 (350)
..++.+.+..+..| +-+.+.+|+|+|||... +.+.........+.+.+..|.+..+....+.+........+..+.
T Consensus 49 ~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 128 (412)
T 3fht_A 49 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 128 (412)
T ss_dssp CHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEE
Confidence 44566667777665 88999999999999863 333333322223466666777665555544444332211111222
Q ss_pred hhhhccc---CCCccccccccChhHHHHHHHHhh--cCCCCcEEEEcCCCcc
Q psy9590 214 YTIRFED---CTSSETLIKYMTDGMLLRECLVDL--DLNNYSVIMLDEAHER 260 (350)
Q Consensus 214 ~~~~~~~---~~~~~~~i~~lS~G~~qr~~ia~a--ll~~~~viIlDEpher 260 (350)
+...... .......+...|.|...+...... .+.+.+++|+||+|.-
T Consensus 129 ~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~ 180 (412)
T 3fht_A 129 YAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 180 (412)
T ss_dssp EECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHH
T ss_pred EeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHH
Confidence 2111111 111224566788888876654322 2478899999999954
No 135
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.43 E-value=1.1e-07 Score=81.75 Aligned_cols=103 Identities=14% Similarity=0.055 Sum_probs=57.4
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC---------cchhhh--------hHHHHHHHH---hcc
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP---------RRVAAM--------SVAKRVAEE---FGC 206 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~---------~~i~~~--------~~~~~v~~~---~~~ 206 (350)
.+++|++++|+|+|||||||+++++.+.. ..|.+.+... ..+.+. .+.+.+... ...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 81 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAK 81 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhc
Confidence 57889999999999999999999998862 2566655311 011111 111222111 000
Q ss_pred ccc-chhhhhhhcccCC---CccccccccChhHHHHHHHHhhcCCCCcEE
Q psy9590 207 RLG-QEVGYTIRFEDCT---SSETLIKYMTDGMLLRECLVDLDLNNYSVI 252 (350)
Q Consensus 207 ~~~-~~v~~~~~~~~~~---~~~~~i~~lS~G~~qr~~ia~all~~~~vi 252 (350)
... ..+...+...... .....+..+|+|++|+++++|++..+|+++
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 82 EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 000 0000000000000 002235679999999999999999998765
No 136
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.40 E-value=7.2e-09 Score=88.65 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=53.4
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhcCCC--CCcEEEEcCCcchhhh------hHH-HHHHH----Hhccc---ccc---h-
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEAGFT--ARGKIGCTQPRRVAAM------SVA-KRVAE----EFGCR---LGQ---E- 211 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~~~~--~~G~i~~~~~~~i~~~------~~~-~~v~~----~~~~~---~~~---~- 211 (350)
++++|+|+|||||||+++.++++.... ..|.|.+. +..+... +.. ..++. ..+.. ..+ .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d-g~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~ 81 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH-AHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEE 81 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc-CcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhh
Confidence 589999999999999999999987432 15777653 2221111 111 11110 00000 000 0
Q ss_pred ---hhhhhhcccCCCccc-cccccChhHHHHHHHHhhcCCCCcE
Q psy9590 212 ---VGYTIRFEDCTSSET-LIKYMTDGMLLRECLVDLDLNNYSV 251 (350)
Q Consensus 212 ---v~~~~~~~~~~~~~~-~i~~lS~G~~qr~~ia~all~~~~v 251 (350)
+...+.. .....++ ....+|+||+||++|||+++.+|++
T Consensus 82 ~a~l~~~i~~-~l~g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 82 GNDLDWIYER-YLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp HTCHHHHHHH-HTTTCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred hhCHHHHHHh-hCCCCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 1111111 0112232 2335999999999999999999876
No 137
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.39 E-value=9.1e-08 Score=95.67 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=55.8
Q ss_pred cccccc-ChhHHHHHHHHhhcCCCC--cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccccc---ceeE
Q psy9590 226 TLIKYM-TDGMLLRECLVDLDLNNY--SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAW---RISR 299 (350)
Q Consensus 226 ~~i~~l-S~G~~qr~~ia~all~~~--~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~---~~~~ 299 (350)
..+..| ||||+||++||++++.+| ++|||||| ...++..........+. +-.+
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp---------------------~~gld~~~~~~i~~~l~~~~~~~~ 450 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEV---------------------DAGIGGAAAIAVAEQLSRLADTRQ 450 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSC---------------------SSSCCTHHHHHHHHHHHHHHHHSE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC---------------------cCCCCHHHHHHHHHHHHHHhCCCE
Confidence 456677 999999999999999999 99999999 44444433221111000 1146
Q ss_pred EEEEecccccccccCCEEEEEeCCe
Q psy9590 300 VVIATNIAETSLTIDGIFYVVDPGF 324 (350)
Q Consensus 300 vi~sT~iae~s~ti~d~~~vid~G~ 324 (350)
||++||+.+.. ..+|.+++|+.|.
T Consensus 451 vi~itH~~~~~-~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 451 VLVVTHLAQIA-ARAHHHYKVEKQV 474 (517)
T ss_dssp EEEECCCHHHH-HHSSEEEEEECCE
T ss_pred EEEEecCHHHH-HhCCEEEEEeccc
Confidence 99999999865 5799999996553
No 138
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.37 E-value=1.5e-06 Score=83.17 Aligned_cols=123 Identities=17% Similarity=0.089 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHh--hcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhh
Q psy9590 136 PIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLA--EAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVG 213 (350)
Q Consensus 136 pi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~--~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~ 213 (350)
..+.++.+.+..+..|+-+.+.+|+|||||+..-..+. .......+.+.+..|.+..+....+.+..... ..+..+.
T Consensus 62 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~ 140 (414)
T 3eiq_A 62 KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGD-YMGASCH 140 (414)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGG-GSCCCEE
T ss_pred CCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhc-ccCceEE
Confidence 34566777778888888899999999999987543333 22112345666667766555444444443221 1111111
Q ss_pred hhh-------hcccCCCccccccccChhHHHHHHHHhhc-CCCCcEEEEcCCCc
Q psy9590 214 YTI-------RFEDCTSSETLIKYMTDGMLLRECLVDLD-LNNYSVIMLDEAHE 259 (350)
Q Consensus 214 ~~~-------~~~~~~~~~~~i~~lS~G~~qr~~ia~al-l~~~~viIlDEphe 259 (350)
... ...........+...|.|...+......+ +.+.+++|+||+|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 141 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp ECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH
T ss_pred EEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH
Confidence 100 01111112345677888988877666544 66789999999997
No 139
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.36 E-value=2e-07 Score=88.80 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=54.7
Q ss_pred ccccc-ccChhHHHHHHHHhhcC---------CCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccc
Q psy9590 225 ETLIK-YMTDGMLLRECLVDLDL---------NNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA 294 (350)
Q Consensus 225 ~~~i~-~lS~G~~qr~~ia~all---------~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~ 294 (350)
+..+. ++|+||+||++||++|+ .+|++++|||| .-.+++.........+
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp---------------------~s~LD~~~~~~l~~~l 317 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDF---------------------TAELDPHRRQYLLDLA 317 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCG---------------------GGCCCHHHHHHHHHHH
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCc---------------------cccCCHHHHHHHHHHH
Confidence 35566 89999999999999999 89999999999 3333332221111100
Q ss_pred cce-eEEEEEecccccccccCCEEEEEeCCeee
Q psy9590 295 WRI-SRVVIATNIAETSLTIDGIFYVVDPGFVK 326 (350)
Q Consensus 295 ~~~-~~vi~sT~iae~s~ti~d~~~vid~G~~~ 326 (350)
... ..+|++||. +. .+|.+++|+.|.+.
T Consensus 318 ~~~~qt~i~~th~-~~---~~~~i~~l~~G~i~ 346 (359)
T 2o5v_A 318 ASVPQAIVTGTEL-AP---GAALTLRAQAGRFT 346 (359)
T ss_dssp HHSSEEEEEESSC-CT---TCSEEEEEETTEEE
T ss_pred HhcCcEEEEEEec-cc---cCCEEEEEECCEEE
Confidence 000 358999994 44 89999999999884
No 140
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.35 E-value=2.2e-07 Score=90.79 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=82.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|+|+.++++.+.+.|.+. .+.+.++||. ++.++++.-..|..+|++||+++|.++.|| +.+|||+|
T Consensus 177 F~~~~~~~~~l~~~L~~~---------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 177 FVHSIKQGAEIGTCLQKA---------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECC
T ss_pred EeCCHHHHHHHHHHHHHc---------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecC
Confidence 788999998888777642 3568899987 345566655678899999999999999999 99999999
Q ss_pred ceeeeeeeccccccccccccCCCCccchhhhhcCCC
Q psy9590 81 FVKQKVYNSKTGMDSLVVTPISQDLPEWKKHVIGGK 116 (350)
Q Consensus 81 ~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k 116 (350)
..+.++|| ..++-.....|.+.++-.++.++.|+.
T Consensus 243 ~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 277 (431)
T 2v6i_A 243 KTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRN 277 (431)
T ss_dssp EEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred ccccceec-ccceeecccccCCHHHHHHhhhccCCC
Confidence 99999999 666666666788888788888888754
No 141
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.34 E-value=3.4e-07 Score=78.28 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=53.6
Q ss_pred ccccccChhHHHHHHHHhhcC----CCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---ccccee
Q psy9590 226 TLIKYMTDGMLLRECLVDLDL----NNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRIS 298 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all----~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~~ 298 (350)
..+..|||||+||++||++++ ..|+++||||| ...++......... ..++-.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp---------------------~a~LD~~~~~~~~~~l~~~~~~~ 118 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEI---------------------DAHLDDANVKRVADLIKESSKES 118 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEEST---------------------TTTCCHHHHHHHHHHHHHHTTTS
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCC---------------------ccCCCHHHHHHHHHHHHHhccCC
Confidence 567789999999999999996 45799999999 22222211111000 000113
Q ss_pred EEEEEecccccccccCCEEEEE--eCCeeeeEe
Q psy9590 299 RVVIATNIAETSLTIDGIFYVV--DPGFVKQKV 329 (350)
Q Consensus 299 ~vi~sT~iae~s~ti~d~~~vi--d~G~~~~~~ 329 (350)
.+|+.||..+. ...+|.++.| ++|..+...
T Consensus 119 ~~ivith~~~~-~~~ad~i~~v~~~~g~s~~~~ 150 (173)
T 3kta_B 119 QFIVITLRDVM-MANADKIIGVSMRDGVSKVVS 150 (173)
T ss_dssp EEEEECSCHHH-HTTCSEEEEEEEETTEEEEEE
T ss_pred EEEEEEecHHH-HHhCCEEEEEEecCCEEEEEE
Confidence 47888888664 5789999866 467665443
No 142
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.33 E-value=2.3e-07 Score=94.62 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|+++.++++.+++.|.+. .+.+.++||. ++.++++.-..|..+|++||++||.+|.|| |.+|||+|
T Consensus 361 F~~s~~~a~~l~~~L~~~---------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 361 FVPSIKAGNDIANCLRKS---------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred EECChhHHHHHHHHHHHc---------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 788999999888887642 3458889984 566677777788999999999999999997 99999999
Q ss_pred ceeeeee--eccccccccccccCCCCccchhhhhcCCC
Q psy9590 81 FVKQKVY--NSKTGMDSLVVTPISQDLPEWKKHVIGGK 116 (350)
Q Consensus 81 ~~k~~~~--~~~~~~~~l~~~~iSk~~~~~rr~~~~~k 116 (350)
+.+.+++ +...++......|.|.+.-.+|.++.|+.
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~ 464 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRN 464 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCC
Confidence 9887766 44456667777799988888888888754
No 143
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.33 E-value=2.2e-07 Score=91.02 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=76.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|+|+.++++.+.+.|.+. .+.+.++|| +++.+++..-..|..+|++||+++|.+|.|| +.+|||+|
T Consensus 183 F~~s~~~a~~l~~~L~~~---------~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g 248 (440)
T 1yks_A 183 FLPSIRAANVMAASLRKA---------GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCR 248 (440)
T ss_dssp ECSCHHHHHHHHHHHHHT---------TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECC
T ss_pred EeCCHHHHHHHHHHHHHc---------CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCC
Confidence 788999998888777642 356889998 4566777777788999999999999999999 99999999
Q ss_pred ceeeeee-eccccccccccccCCCCccchhhhhcCC
Q psy9590 81 FVKQKVY-NSKTGMDSLVVTPISQDLPEWKKHVIGG 115 (350)
Q Consensus 81 ~~k~~~~-~~~~~~~~l~~~~iSk~~~~~rr~~~~~ 115 (350)
+.+.++| ++..++......|.+.++-.++.++.|+
T Consensus 249 ~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR 284 (440)
T 1yks_A 249 TAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284 (440)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred ccceeeecccccceeeccccccCHHHHHHhccccCC
Confidence 9999987 4555566666668888777888888775
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.32 E-value=4.8e-07 Score=75.33 Aligned_cols=27 Identities=33% Similarity=0.569 Sum_probs=25.2
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+|+.++|.|+||+||||+++.+.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999999773
No 145
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.31 E-value=1.3e-07 Score=89.85 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=31.0
Q ss_pred HHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 142 HELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 142 ~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
+++... ..|++++|+|+||+|||||++.+++....+..|.|..
T Consensus 207 ~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~ 249 (358)
T 2rcn_A 207 KPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN 249 (358)
T ss_dssp HHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----
T ss_pred HHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccc
Confidence 444443 4799999999999999999999999874144666643
No 146
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.30 E-value=3.3e-07 Score=96.65 Aligned_cols=81 Identities=14% Similarity=0.064 Sum_probs=58.6
Q ss_pred ccccccccChhHHHHHHHHhhcCCCC--cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccce-
Q psy9590 224 SETLIKYMTDGMLLRECLVDLDLNNY--SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWRI- 297 (350)
Q Consensus 224 ~~~~i~~lS~G~~qr~~ia~all~~~--~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~~- 297 (350)
.++.+..|||||+||+.||++|..+| .++||||| +-.+++.-.+.... .+...
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEP---------------------TagLdp~~~~~L~~~L~~Lr~~G 556 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEP---------------------SIGLHQRDNDRLIATLKSMRDLG 556 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECT---------------------TTTCCGGGHHHHHHHHHHHHTTT
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCc---------------------ccCCCHHHHHHHHHHHHHHHhCC
Confidence 45778899999999999999999985 99999999 33333322211111 00000
Q ss_pred eEEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
.+||+.+|..+.. ..+|.++++ +.|.+.
T Consensus 557 ~TVIvVeHdl~~i-~~ADrIi~LgpgaG~~gG~iv 590 (972)
T 2r6f_A 557 NTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVV 590 (972)
T ss_dssp CEEEEECCCHHHH-HSCSEEEEECSSSGGGCCSEE
T ss_pred CEEEEEecCHHHH-HhCCEEEEeCCCccCCCCEEE
Confidence 4799999999975 689999999 567663
No 147
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.29 E-value=1.2e-07 Score=87.79 Aligned_cols=109 Identities=12% Similarity=-0.053 Sum_probs=57.5
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcCCC----CCcEEEEcCCcchhhhhHHHHHHHHh---------ccccc---chh
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAGFT----ARGKIGCTQPRRVAAMSVAKRVAEEF---------GCRLG---QEV 212 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~~~----~~G~i~~~~~~~i~~~~~~~~v~~~~---------~~~~~---~~v 212 (350)
..+.+++|.|++||||||+.+.+....... ....+...++... ......++.... +.+.. ...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~-~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL-THEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC-CHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC-ChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 456799999999999999999998876421 0112212222211 122223333211 01100 001
Q ss_pred hhhhhcccCC------C---ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCC
Q psy9590 213 GYTIRFEDCT------S---SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258 (350)
Q Consensus 213 ~~~~~~~~~~------~---~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEph 258 (350)
...+.-.... . ....-..+||||.||+.+|++...+|++||+||+.
T Consensus 108 ~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~ 162 (290)
T 1odf_A 108 QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWF 162 (290)
T ss_dssp HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESS
T ss_pred HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCcc
Confidence 1111100000 0 01112468999999998873332289999999993
No 148
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.29 E-value=5.5e-07 Score=76.79 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=25.6
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+.+|+.++|.||||+||||+++++++..
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999876
No 149
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.24 E-value=4.5e-07 Score=96.00 Aligned_cols=81 Identities=14% Similarity=0.058 Sum_probs=57.9
Q ss_pred ccccccccChhHHHHHHHHhhcCCC--CcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccccce----
Q psy9590 224 SETLIKYMTDGMLLRECLVDLDLNN--YSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRI---- 297 (350)
Q Consensus 224 ~~~~i~~lS~G~~qr~~ia~all~~--~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~~~~---- 297 (350)
.++.+..|||||+||+.||++|..+ |.+|||||| +-.+++.-.+.....+.+.
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEP---------------------TagLdp~~~~~L~~~L~~Lr~~G 573 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEP---------------------SIGLHQRDNRRLIETLTRLRDLG 573 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECT---------------------TTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCc---------------------ccCCCHHHHHHHHHHHHHHHHcC
Confidence 4577889999999999999999998 589999999 3333332221111100000
Q ss_pred eEEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
.+||+.+|+.+.. .++|.++++ +.|.+.
T Consensus 574 ~TVIvVeHdl~~i-~~ADrIi~Lgp~aG~~gG~iv 607 (993)
T 2ygr_A 574 NTLIVVEHDEDTI-EHADWIVDIGPGAGEHGGRIV 607 (993)
T ss_dssp CEEEEECCCHHHH-HTCSEEEEECSSSGGGCCSCC
T ss_pred CEEEEECCCHHHH-HhCCEEEEecCccccCCCEEE
Confidence 4799999999974 689999999 466653
No 150
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.24 E-value=5.2e-07 Score=78.97 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=25.7
Q ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 146 KAVSDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 146 ~~i~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
..+++|++++|+|||||||||++++++++..
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999999999873
No 151
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.22 E-value=7.3e-07 Score=93.51 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=57.6
Q ss_pred ccccccccChhHHHHHHHHhhcCCCC--cEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcc---cccc-e
Q psy9590 224 SETLIKYMTDGMLLRECLVDLDLNNY--SVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEP---NAWR-I 297 (350)
Q Consensus 224 ~~~~i~~lS~G~~qr~~ia~all~~~--~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~---~~~~-~ 297 (350)
.++.+..|||||+||+.||++|..+| .++||||| +..+++.-.+.... .+.. -
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEP---------------------T~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEP---------------------SAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECT---------------------TTTCCGGGHHHHHHHHHHHHTTT
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCc---------------------cccCCHHHHHHHHHHHHHHHHcC
Confidence 35778899999999999999999999 49999999 33333222111110 0000 1
Q ss_pred eEEEEEecccccccccCCEEEEE------eCCeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVV------DPGFVK 326 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vi------d~G~~~ 326 (350)
.+||+.+|..+. +.++|+++++ +.|.+.
T Consensus 432 ~TVIvVeHdl~~-l~~aD~ii~lgpgaG~~~G~iv 465 (842)
T 2vf7_A 432 NSLFVVEHDLDV-IRRADWLVDVGPEAGEKGGEIL 465 (842)
T ss_dssp CEEEEECCCHHH-HTTCSEEEEECSSSGGGCCSEE
T ss_pred CEEEEEcCCHHH-HHhCCEEEEeCCCcccCCCEEE
Confidence 469999999985 5689999999 566653
No 152
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.19 E-value=8.3e-07 Score=91.38 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|+|+.++++.+++.|.+. .+.+.++||. ++.++++.-..|..+|++||+++|.+|.|| +.+|||+|
T Consensus 416 F~~s~~~~e~la~~L~~~---------g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 416 FVASVKMSNEIAQCLQRA---------GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp ECSSHHHHHHHHHHHHTT---------TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred EECCHHHHHHHHHHHHhC---------CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 788999998887777532 3568899983 566777777788999999999999999999 99999999
Q ss_pred ceeeee--eeccccccccccccCCCCccchhhhhcCCC
Q psy9590 81 FVKQKV--YNSKTGMDSLVVTPISQDLPEWKKHVIGGK 116 (350)
Q Consensus 81 ~~k~~~--~~~~~~~~~l~~~~iSk~~~~~rr~~~~~k 116 (350)
+...++ ||+..++..+...|.|.++-.++.++.|+.
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~ 519 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRN 519 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCC
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCC
Confidence 877654 677667777777889988888888888764
No 153
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.19 E-value=4.2e-08 Score=91.35 Aligned_cols=31 Identities=0% Similarity=-0.220 Sum_probs=25.3
Q ss_pred ccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 226 TLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
..+..+|+|++||+.++++++ ++++|||-..
T Consensus 109 ~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 109 RYLHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred HHHHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 445689999999998888875 9999999433
No 154
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.18 E-value=1.6e-06 Score=81.64 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=31.8
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT 186 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~ 186 (350)
.+|++++|+|+|||||||+++.+.+... +.+|+|.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~ 163 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIA 163 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEE
Confidence 5799999999999999999999999884 457877653
No 155
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.11 E-value=5e-06 Score=81.79 Aligned_cols=123 Identities=20% Similarity=0.170 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhcC--CEEEEeCCCCCCHHHHH--HHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhh
Q psy9590 138 YKLKHELIKAVSDN--QILIVIGETGSGKTTQI--TQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVG 213 (350)
Q Consensus 138 ~~~~~~i~~~i~~g--~v~~liG~nGsGKSTll--~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~ 213 (350)
+.++...+..+..| +-+.+.|++|||||... +++.........+.+.+..|.+..+......+........+..+.
T Consensus 116 ~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~ 195 (479)
T 3fmp_B 116 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 195 (479)
T ss_dssp CHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEE
T ss_pred CHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEE
Confidence 33455566666665 88999999999999864 332222211222356666776655555444443322211111121
Q ss_pred hhhhcc---cCCCccccccccChhHHHHHHHHhhc--CCCCcEEEEcCCCcc
Q psy9590 214 YTIRFE---DCTSSETLIKYMTDGMLLRECLVDLD--LNNYSVIMLDEAHER 260 (350)
Q Consensus 214 ~~~~~~---~~~~~~~~i~~lS~G~~qr~~ia~al--l~~~~viIlDEpher 260 (350)
+..... ........+...|.|........... +.+.++||+||.|.-
T Consensus 196 ~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 196 YAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp EESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHH
T ss_pred EEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHH
Confidence 111111 11111235667788888766544322 478999999999954
No 156
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.11 E-value=1.5e-05 Score=75.53 Aligned_cols=125 Identities=17% Similarity=0.080 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHH--HHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhh
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQI--TQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGY 214 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll--~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~ 214 (350)
.+.++.+.+..+..|+-+.+.+|+|+|||... +.+........++.+.+.-|.+..+....+.+........+..+..
T Consensus 31 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 110 (391)
T 1xti_A 31 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 110 (391)
T ss_dssp CCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 45566777788888888999999999999854 3333322222234566656765444444443333221100111111
Q ss_pred hhhc-------ccCCCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCccc
Q psy9590 215 TIRF-------EDCTSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHERT 261 (350)
Q Consensus 215 ~~~~-------~~~~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEpher~ 261 (350)
...- .........+...|.+.......... .+.+.+++|+||+|.-.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~ 165 (391)
T 1xti_A 111 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 165 (391)
T ss_dssp ECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHT
T ss_pred EeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHh
Confidence 0000 00000112456677777776544433 37889999999999653
No 157
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.11 E-value=5.5e-06 Score=76.77 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=55.5
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc--CCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcccc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT--QPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETL 227 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~--~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~ 227 (350)
++++++++|+||+||||++..+.+.... .+|++.+. ++++.+.......++...+. ....... .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l----------~~~~~~~-~-- 162 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGV----------PVLEVMD-G-- 162 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHHHHHHHTC----------CEEECCT-T--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHHhcccCCe----------EEEEcCC-C--
Confidence 5889999999999999999999998743 36666553 33333222111111111111 1110000 0
Q ss_pred ccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 228 IKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 228 i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
......+|.+++.+...+|+++|+|||
T Consensus 163 ---~~p~~l~~~~l~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 163 ---ESPESIRRRVEEKARLEARDLILVDTA 189 (295)
T ss_dssp ---CCHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 122345678888887789999999999
No 158
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.10 E-value=2.8e-06 Score=81.18 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=50.9
Q ss_pred ccccccChhHHHHH------HHHhhcCCC-CcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCccc---cc
Q psy9590 226 TLIKYMTDGMLLRE------CLVDLDLNN-YSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPN---AW 295 (350)
Q Consensus 226 ~~i~~lS~G~~qr~------~ia~all~~-~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~---~~ 295 (350)
..+..+|+||+||+ ++|++++.+ |+++||||| ...++.......... ..
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp---------------------~~~LD~~~~~~l~~~l~~~~ 334 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEP---------------------TVYLDENRRAKLAEIFRKVK 334 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEEST---------------------TTTCCHHHHHHHHHHHHHCC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCC---------------------CCcCCHHHHHHHHHHHHHhc
Confidence 45678999999988 456888999 999999999 223332221111000 00
Q ss_pred ceeEEEEEecccccccccCCEEEEEe
Q psy9590 296 RISRVVIATNIAETSLTIDGIFYVVD 321 (350)
Q Consensus 296 ~~~~vi~sT~iae~s~ti~d~~~vid 321 (350)
.-..||++||..+ ...++|.+++|+
T Consensus 335 ~~~~vi~~th~~~-~~~~~d~~~~l~ 359 (371)
T 3auy_A 335 SIPQMIIITHHRE-LEDVADVIINVK 359 (371)
T ss_dssp SCSEEEEEESCGG-GGGGCSEEEEEE
T ss_pred cCCeEEEEEChHH-HHhhCCEEEEEE
Confidence 0125999999987 568999999997
No 159
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.08 E-value=9.4e-08 Score=87.78 Aligned_cols=110 Identities=19% Similarity=0.183 Sum_probs=63.6
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchh--hhhHHHHHHHHhcc--------cccchhh
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVA--AMSVAKRVAEEFGC--------RLGQEVG 213 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~--~~~~~~~v~~~~~~--------~~~~~v~ 213 (350)
+...+..| ++|.|||||||||+++.+.+..+. +.+.+....... .-.....+...+.. ...+++.
T Consensus 39 ~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid 113 (274)
T 2x8a_A 39 LGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL---NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVD 113 (274)
T ss_dssp TTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC---EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCT
T ss_pred cCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhh
Confidence 33345566 999999999999999999998743 456554321111 01111222221111 1112222
Q ss_pred hhhhccc-----CC--CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 214 YTIRFED-----CT--SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 214 ~~~~~~~-----~~--~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
....... .. ..+..+..||||++|+..++.++.++|++| ||+--|
T Consensus 114 ~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r 165 (274)
T 2x8a_A 114 ALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILR 165 (274)
T ss_dssp TTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHS
T ss_pred hhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcC
Confidence 1110000 00 012345689999999999999999999974 998666
No 160
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.08 E-value=1.1e-06 Score=77.91 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=29.9
Q ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC-CCCcEEEE
Q psy9590 146 KAVSDNQILIVIGETGSGKTTQITQYLAEAGF-TARGKIGC 185 (350)
Q Consensus 146 ~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~-~~~G~i~~ 185 (350)
..+++|++++|+|||||||||+++.+++..++ ...|.+.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ 51 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSH 51 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEe
Confidence 46789999999999999999999999998753 23555544
No 161
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.08 E-value=1.9e-06 Score=74.65 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=25.7
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
++.+|++++|+|||||||||+++++.+..
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999999985
No 162
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.07 E-value=8.7e-06 Score=80.97 Aligned_cols=120 Identities=18% Similarity=0.157 Sum_probs=65.5
Q ss_pred HHHHHhhcC--CEEEEeCCCCCCHHHHH--HHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhccc-ccchhhhhhh
Q psy9590 143 ELIKAVSDN--QILIVIGETGSGKTTQI--TQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCR-LGQEVGYTIR 217 (350)
Q Consensus 143 ~i~~~i~~g--~v~~liG~nGsGKSTll--~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~-~~~~v~~~~~ 217 (350)
+.+..+..| +-+.+.+|+|||||... +.+..+.....++.+.+..|++..+....+.+....... ........-.
T Consensus 148 ~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~ 227 (508)
T 3fho_A 148 KALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS 227 (508)
T ss_dssp SSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-----
T ss_pred HHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCc
Confidence 334455555 88999999999999853 333332222224467776787655555444444332211 1111111111
Q ss_pred cccCCCccccccccChhHHHHHHHHhhc-CCCCcEEEEcCCCcccc
Q psy9590 218 FEDCTSSETLIKYMTDGMLLRECLVDLD-LNNYSVIMLDEAHERTI 262 (350)
Q Consensus 218 ~~~~~~~~~~i~~lS~G~~qr~~ia~al-l~~~~viIlDEpher~~ 262 (350)
..........+...|.+..........+ +.+.++||+||.|...-
T Consensus 228 ~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 228 VPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp -----CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred ccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 1111112345667788887766554443 77899999999997643
No 163
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.07 E-value=7.3e-06 Score=80.84 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=32.8
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT 186 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~ 186 (350)
+..|++++|+|+|||||||+++++++... +.+|+|.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~ 327 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLA 327 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEe
Confidence 45789999999999999999999999884 447888774
No 164
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.04 E-value=6e-07 Score=84.15 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=22.2
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
++++|+|+|||||||+++.+++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 589999999999999999999874
No 165
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.03 E-value=6e-05 Score=76.44 Aligned_cols=116 Identities=17% Similarity=0.168 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHH--HHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccc------
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTT--QITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQ------ 210 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKST--ll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~------ 210 (350)
.++.+++..+-.|+-+.+++|||+|||. +++.+. ..|.+.+.-|.+.-+......+.. ++.....
T Consensus 47 p~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~-~gi~~~~l~~~~~ 119 (591)
T 2v1x_A 47 PLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQ-LGISATMLNASSS 119 (591)
T ss_dssp TTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHH-HTCCEEECCSSCC
T ss_pred HHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHh-cCCcEEEEeCCCC
Confidence 4566778888888889999999999998 455433 146666666754433333333332 2322110
Q ss_pred --hhhhhhhcccCCCccccccccChhHHHH------HHHHhhcCCCCcEEEEcCCCccc
Q psy9590 211 --EVGYTIRFEDCTSSETLIKYMTDGMLLR------ECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 211 --~v~~~~~~~~~~~~~~~i~~lS~G~~qr------~~ia~all~~~~viIlDEpher~ 261 (350)
.................+.+.|.+.... ..-....+.+.+++|+||+|+-+
T Consensus 120 ~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is 178 (591)
T 2v1x_A 120 KEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCS 178 (591)
T ss_dssp HHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGS
T ss_pred HHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccc
Confidence 0000000000012234566677765531 11112336788999999999854
No 166
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.99 E-value=1.3e-06 Score=77.56 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHH-hhc
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYL-AEA 175 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~-~~~ 175 (350)
+.+..+..++++|++++|+|||||||||+++++. +..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3466778889999999999999999999999999 875
No 167
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.97 E-value=1.5e-06 Score=75.48 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=27.5
Q ss_pred ccccccChhHHHH-HHHHhhcCCCCcEEEEcCC
Q psy9590 226 TLIKYMTDGMLLR-ECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 226 ~~i~~lS~G~~qr-~~ia~all~~~~viIlDEp 257 (350)
+++..+|+|++|+ +..+++++.+|..+++|||
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVET 177 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEE
Confidence 4566799999999 7889999889888889998
No 168
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.95 E-value=2.6e-07 Score=89.76 Aligned_cols=30 Identities=3% Similarity=-0.023 Sum_probs=23.1
Q ss_pred ccChhHHHHHHHHhhcCCCCc---EEEEcCCCc
Q psy9590 230 YMTDGMLLRECLVDLDLNNYS---VIMLDEAHE 259 (350)
Q Consensus 230 ~lS~G~~qr~~ia~all~~~~---viIlDEphe 259 (350)
.++.++++++.|+++++.+|+ +|++|||-.
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~ 150 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 150 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc
Confidence 456677888889999999999 999999953
No 169
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.95 E-value=8.6e-06 Score=81.12 Aligned_cols=48 Identities=25% Similarity=0.253 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCC
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQP 188 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~ 188 (350)
+.+.+...++.|+.++|+|+|||||||+++.++++.. +..|.+.+..+
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-~~~giitied~ 296 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-PDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-TTCCEEEEESS
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-CCCCEEEEcCc
Confidence 4567788899999999999999999999999999984 55788877554
No 170
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.95 E-value=6.7e-06 Score=89.12 Aligned_cols=117 Identities=17% Similarity=0.275 Sum_probs=83.1
Q ss_pred chhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhh
Q psy9590 135 LPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGY 214 (350)
Q Consensus 135 lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~ 214 (350)
++...++.+.+..+..|+-+.+.|+||||||+..-..+... ...++.+.+..|.+..+......+...++ .++.
T Consensus 183 f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~-l~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~Vgl 256 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQKYRELLAEFG-----DVGL 256 (1108)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHTS-----SEEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-HhcCCeEEEEcCcHHHHHHHHHHHHHHhC-----CccE
Confidence 44667888899999999999999999999999754444332 23366888888988777777777766655 2332
Q ss_pred hhhcccCCCccccccccChhHHHHHHHHhhc-CCCCcEEEEcCCC
Q psy9590 215 TIRFEDCTSSETLIKYMTDGMLLRECLVDLD-LNNYSVIMLDEAH 258 (350)
Q Consensus 215 ~~~~~~~~~~~~~i~~lS~G~~qr~~ia~al-l~~~~viIlDEph 258 (350)
.. .......+..+..+|.|.+......... +.+.++||+||+|
T Consensus 257 lt-Gd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH 300 (1108)
T 3l9o_A 257 MT-GDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH 300 (1108)
T ss_dssp EC-SSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG
T ss_pred Ee-CccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh
Confidence 11 1111223466788999988877665544 7788999999999
No 171
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.95 E-value=8.2e-06 Score=68.57 Aligned_cols=72 Identities=15% Similarity=0.391 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++.+.+.+.|.+. .+.+.++||+++.+++.++++.-..|..+|++||++++..+.+|++.+||+.+
T Consensus 36 F~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 36 FCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 106 (165)
T ss_dssp EESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESS
T ss_pred EECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeC
Confidence 556677777766666531 35688999999999999888777778899999999999999999999999866
Q ss_pred c
Q psy9590 81 F 81 (350)
Q Consensus 81 ~ 81 (350)
+
T Consensus 107 ~ 107 (165)
T 1fuk_A 107 L 107 (165)
T ss_dssp C
T ss_pred C
Confidence 5
No 172
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.95 E-value=7.5e-06 Score=76.23 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=31.9
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcCC-CCCcEEEE
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAGF-TARGKIGC 185 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~~-~~~G~i~~ 185 (350)
.+|++++|+|+|||||||+++++.+.... +.+|.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 78999999999999999999999998741 45787766
No 173
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.93 E-value=6.1e-06 Score=83.96 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
.+++.+...+..|+.++|.||||+||||+++.+.+.......|.+.+
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~ 94 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILV 94 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEE
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEE
Confidence 45678889999999999999999999999999999875543355544
No 174
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.92 E-value=1.7e-05 Score=73.46 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=25.2
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.+|++++++|+||+||||++..+.+...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999998874
No 175
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.92 E-value=2.4e-06 Score=81.80 Aligned_cols=72 Identities=14% Similarity=0.314 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|+++.++++.+++.|.+. .+.+.++||+++.+++.++++.-..|..+|++||+++|.++.+|++.+||+.+
T Consensus 286 f~~~~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~ 356 (414)
T 3eiq_A 286 FINTRRKVDWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 356 (414)
T ss_dssp ECSCHHHHHHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESS
T ss_pred EeCCHHHHHHHHHHHHhc---------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeC
Confidence 678888888877777531 35688899999999999999888889999999999999999999999999866
Q ss_pred c
Q psy9590 81 F 81 (350)
Q Consensus 81 ~ 81 (350)
.
T Consensus 357 ~ 357 (414)
T 3eiq_A 357 L 357 (414)
T ss_dssp C
T ss_pred C
Confidence 5
No 176
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.91 E-value=4.4e-06 Score=72.61 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=23.0
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+|++++|+|||||||||++++++++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999999976
No 177
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.90 E-value=8.9e-06 Score=79.22 Aligned_cols=84 Identities=12% Similarity=0.036 Sum_probs=54.5
Q ss_pred ccccccChhHHHHHHHHhhcC----CCCcEEEEcCCCccccccccccChhHHHhhhhcCcccceeccCCcccc---c-ce
Q psy9590 226 TLIKYMTDGMLLRECLVDLDL----NNYSVIMLDEAHERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNA---W-RI 297 (350)
Q Consensus 226 ~~i~~lS~G~~qr~~ia~all----~~~~viIlDEpher~~~~d~ll~~l~~~~~~~~~~v~~~~~~~~~~~~---~-~~ 297 (350)
..+..||+||+++++||++++ .+|+++||||| ...++..........+ . .-
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp---------------------~~~LD~~~~~~l~~~l~~~~~~~ 387 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEV---------------------DAALDITNVQRIAAYIRRHRNPD 387 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESST---------------------TTTCCHHHHHHHHHHHHHHCBTT
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCC---------------------cccCCHHHHHHHHHHHHHHhcCC
Confidence 446789999999999999998 68999999999 2222221111100000 0 00
Q ss_pred eEEEEEecccccccccCCEEEEEe----CCeeeeEeee
Q psy9590 298 SRVVIATNIAETSLTIDGIFYVVD----PGFVKQKVYN 331 (350)
Q Consensus 298 ~~vi~sT~iae~s~ti~d~~~vid----~G~~~~~~~~ 331 (350)
..+|++||..+. +..+|.+++|. .|..+....+
T Consensus 388 ~~~ii~th~~~~-~~~~d~~~~~~~~~~~~~s~~~~~~ 424 (430)
T 1w1w_A 388 LQFIVISLKNTM-FEKSDALVGVYRQQQENSSKIITLD 424 (430)
T ss_dssp BEEEEECSCHHH-HTTCSEEEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEECCHHH-HHhCCEEEEEEEeCCCCeeEEEEEe
Confidence 258999999654 57899999986 2445444433
No 178
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.89 E-value=5e-06 Score=78.50 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
.+.+++...+.+|++++|+|+|||||||+++++++... +.+|++.+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-~~~g~v~i 88 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-AAGHKVAV 88 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-hCCCEEEE
Confidence 45677778889999999999999999999999999873 44677755
No 179
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.85 E-value=1.2e-05 Score=76.16 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++.+.+.+.|.+. ...+..+||+++.+++.++++.-..|..+|++||+++|.++.+|++.+||+.+
T Consensus 249 f~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 319 (395)
T 3pey_A 249 FVATKKTANVLYGKLKSE---------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD 319 (395)
T ss_dssp ECSCHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESS
T ss_pred EeCCHHHHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcC
Confidence 677788887777777542 24578899999999999998877788899999999999999999999999866
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
+.
T Consensus 320 ~p 321 (395)
T 3pey_A 320 LP 321 (395)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.83 E-value=1.4e-06 Score=84.62 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=61.0
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC----------CCCCcEEEEcCCcchh-----hh----h----HHHHH
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAG----------FTARGKIGCTQPRRVA-----AM----S----VAKRV 200 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~----------~~~~G~i~~~~~~~i~-----~~----~----~~~~v 200 (350)
+..+++.++.++|+|+||||||||++++++... .+..|.+.......+. .. . .....
T Consensus 150 i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f 229 (416)
T 1udx_A 150 LRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF 229 (416)
T ss_dssp EEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH
T ss_pred eeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH
Confidence 445677889999999999999999999998631 0111222221101100 00 0 00000
Q ss_pred HHHhcccccchhhhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEE
Q psy9590 201 AEEFGCRLGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIML 254 (350)
Q Consensus 201 ~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIl 254 (350)
.... +.....+...+.. +..+..+|+|++|++.++++|+..|.+|++
T Consensus 230 l~~~-----era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 230 LRHI-----ARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp HHHH-----TSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred HHHH-----HHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 0000 0111112222222 456778999999999999999999999998
No 181
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.83 E-value=8.4e-05 Score=65.04 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHh---cccccch
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEF---GCRLGQE 211 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~---~~~~~~~ 211 (350)
.+.++.+.+..+.+|.-+.+.+|+|+|||.. ++.+.........+.+.+..|.+..+....+.+.... +......
T Consensus 37 ~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 116 (224)
T 1qde_A 37 PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHAC 116 (224)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred CcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEE
Confidence 3556667777788888899999999999975 3333333322223456666676554444444333221 1111111
Q ss_pred hhhhhhcccC-CCccccccccChhHHHHHHHHh-hcCCCCcEEEEcCCCc
Q psy9590 212 VGYTIRFEDC-TSSETLIKYMTDGMLLRECLVD-LDLNNYSVIMLDEAHE 259 (350)
Q Consensus 212 v~~~~~~~~~-~~~~~~i~~lS~G~~qr~~ia~-all~~~~viIlDEphe 259 (350)
.+..-..... ...+..+...|.|......... ..+.+.+++|+||+|.
T Consensus 117 ~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 117 IGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 166 (224)
T ss_dssp CC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred eCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH
Confidence 1100000000 0011345567777766554332 3367789999999984
No 182
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.83 E-value=8.3e-06 Score=69.95 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=23.8
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
|++++|+|||||||||+++++++..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999874
No 183
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.82 E-value=7.9e-06 Score=71.38 Aligned_cols=110 Identities=9% Similarity=0.005 Sum_probs=58.4
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCC--CCcEEEEcCCcchhhhhHHHHHH--HHhcccccch---hhhhhh-c-
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGFT--ARGKIGCTQPRRVAAMSVAKRVA--EEFGCRLGQE---VGYTIR-F- 218 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~~--~~G~i~~~~~~~i~~~~~~~~v~--~~~~~~~~~~---v~~~~~-~- 218 (350)
.++|++++|+|+|||||||+++++.+..... ..|.|.. ++..+..... ..+. ...+...... +...+. +
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 96 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM-DGFHLDNRLL-EPRGLLPRKGAPETFDFEGFQRLCHALK 96 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES-GGGBCCHHHH-GGGTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEec-CCCcCCHHHH-HHhcccccCCCCchhhHHHHHHHHHHHh
Confidence 3679999999999999999999999987431 2344443 2221111000 0000 0000000000 000000 0
Q ss_pred -c-cC-CCccccccccChhHHHHHHHH-hhcCCCCcEEEEcCCCc
Q psy9590 219 -E-DC-TSSETLIKYMTDGMLLRECLV-DLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 219 -~-~~-~~~~~~i~~lS~G~~qr~~ia-~all~~~~viIlDEphe 259 (350)
. +. .+....-...|+|++|++.++ ++++.++.++++|||.+
T Consensus 97 ~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~ 141 (208)
T 3c8u_A 97 HQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW 141 (208)
T ss_dssp HCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG
T ss_pred cCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh
Confidence 0 00 001112224688999998887 78888888888898854
No 184
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.78 E-value=0.00017 Score=68.92 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHh--hcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhh
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLA--EAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYT 215 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~--~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~ 215 (350)
+.++.+.+..+..|+-+.+.+++|+|||...-..+. ......++.+.+.-|.+.-+....+.+... +...+..+...
T Consensus 61 ~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~~~~ 139 (410)
T 2j0s_A 61 SAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL-GDYMNVQCHAC 139 (410)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH-TTTTTCCEEEE
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH-hccCCeEEEEE
Confidence 456667777777888899999999999976533322 211122455666667655444444433322 11111111000
Q ss_pred hhcc------cCCCccccccccChhHHHHHHHHh-hcCCCCcEEEEcCCCc
Q psy9590 216 IRFE------DCTSSETLIKYMTDGMLLRECLVD-LDLNNYSVIMLDEAHE 259 (350)
Q Consensus 216 ~~~~------~~~~~~~~i~~lS~G~~qr~~ia~-all~~~~viIlDEphe 259 (350)
.... ........+...|.|......-.. ..+.+.+++|+||+|.
T Consensus 140 ~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~ 190 (410)
T 2j0s_A 140 IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE 190 (410)
T ss_dssp CTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred ECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH
Confidence 0000 000011234556777766554433 2357789999999996
No 185
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.77 E-value=4.1e-05 Score=73.86 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=27.5
Q ss_pred HHHHHH-HHhhcCCEEEEeCCCCCCHHHHHHHHHh
Q psy9590 140 LKHELI-KAVSDNQILIVIGETGSGKTTQITQYLA 173 (350)
Q Consensus 140 ~~~~i~-~~i~~g~v~~liG~nGsGKSTll~~l~~ 173 (350)
-.+.++ --+..|++++|+|++||||||++.+++.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 344454 4678999999999999999999997653
No 186
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.77 E-value=2e-06 Score=87.51 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=23.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
.++|+|+|||||||++++++|...+..+|.|.+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~ 79 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTR 79 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCC
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEE
Confidence 489999999999999999999864325776644
No 187
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.77 E-value=0.00013 Score=64.78 Aligned_cols=123 Identities=19% Similarity=0.156 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCCC-CCcEEEEcCCcchhhhhHHHHHHHHhcccccchhh
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGFT-ARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVG 213 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~~-~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~ 213 (350)
.+.++.+.+..+..|.-+.+.+|+|+|||.. ++.+....... .+..+.+.-|.+.-+....+.+..... ..+..+.
T Consensus 52 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~ 130 (245)
T 3dkp_A 52 PTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISE-GTGFRIH 130 (245)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTT-TSCCCEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhc-ccCceEE
Confidence 3456667777788888899999999999984 55544443222 223455556765544444444433221 1111110
Q ss_pred ----hh---hhcccCCCccccccccChhHHHHHHHHh---hcCCCCcEEEEcCCCcc
Q psy9590 214 ----YT---IRFEDCTSSETLIKYMTDGMLLRECLVD---LDLNNYSVIMLDEAHER 260 (350)
Q Consensus 214 ----~~---~~~~~~~~~~~~i~~lS~G~~qr~~ia~---all~~~~viIlDEpher 260 (350)
.. ..+.........+...|.|......... ..+.+.+++|+||+|.-
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~ 187 (245)
T 3dkp_A 131 MIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKL 187 (245)
T ss_dssp CCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHH
T ss_pred EEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHh
Confidence 00 0111111223456677888877665443 34778999999999863
No 188
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.74 E-value=0.00011 Score=63.47 Aligned_cols=122 Identities=17% Similarity=0.097 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhh
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYT 215 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~ 215 (350)
+.++.+.+..+.+|+-+.+.+|+|+|||.. ++.+........+..+.+.-|.+..+....+.+........+..+...
T Consensus 27 ~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 106 (206)
T 1vec_A 27 SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT 106 (206)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred CHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEE
Confidence 456667777788888899999999999964 333333322222334555566554444444433332211001111100
Q ss_pred hhc------ccCCCccccccccChhHHHHHHHHh-hcCCCCcEEEEcCCCc
Q psy9590 216 IRF------EDCTSSETLIKYMTDGMLLRECLVD-LDLNNYSVIMLDEAHE 259 (350)
Q Consensus 216 ~~~------~~~~~~~~~i~~lS~G~~qr~~ia~-all~~~~viIlDEphe 259 (350)
... .........+...|.|......-.. ..+.+.+++|+||+|.
T Consensus 107 ~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 107 TGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 000 0000112345566777765544332 2367889999999986
No 189
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.74 E-value=8.7e-06 Score=80.26 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=35.0
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT 186 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~ 186 (350)
++..++++ ++++|+|||||||||++++++++.. +.+|.|.+.
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~ 63 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-PDLTLLNFR 63 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-CCTTTCCCC
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEEC
Confidence 45556888 9999999999999999999999984 557877653
No 190
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.73 E-value=1.4e-05 Score=77.58 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCE--EEEeCCCCCCHHHHHHHHHhhc
Q psy9590 141 KHELIKAVSDNQI--LIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 141 ~~~i~~~i~~g~v--~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+++..++.+|++ ++|+|+||||||||+++++|..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 6788999999999 9999999999999999999863
No 191
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.72 E-value=1.9e-05 Score=67.28 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=24.7
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.|++++|+|||||||||+++.+++..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999998763
No 192
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.72 E-value=8.2e-06 Score=88.44 Aligned_cols=76 Identities=17% Similarity=0.004 Sum_probs=58.0
Q ss_pred EEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCCceeeeeeeccccccccccccCCCCccchhh
Q psy9590 31 ILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWKK 110 (350)
Q Consensus 31 ~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr 110 (350)
|.++||+|++.++..++..-..|..+|++||++++.+|.||++.+||+... .||... ..|+|.+.-.++.
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~~------~r~iS~~eyiQr~ 576 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQQ------FRWVSGGEYIQMS 576 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE----EESSSC------EEECCHHHHHHHH
T ss_pred eeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc----ccCccc------cccCCHHHHHHhh
Confidence 789999999999999998888899999999999999999999999997543 344332 2355655556666
Q ss_pred hhcCCC
Q psy9590 111 HVIGGK 116 (350)
Q Consensus 111 ~~~~~k 116 (350)
|++|+.
T Consensus 577 GRAGR~ 582 (1108)
T 3l9o_A 577 GRAGRR 582 (1108)
T ss_dssp HHSCCS
T ss_pred cccCCC
Confidence 666543
No 193
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.71 E-value=1.7e-05 Score=75.91 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++.+.+.+.|.+. .+.+..+||+++.+++..+++.-..|..+|++||+++|.++.+|++.+||+.+
T Consensus 282 f~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~ 352 (417)
T 2i4i_A 282 FVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFD 352 (417)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESS
T ss_pred EECCHHHHHHHHHHHHHC---------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEc
Confidence 677888888877777542 35688999999999999888776678889999999999999999999999866
Q ss_pred c
Q psy9590 81 F 81 (350)
Q Consensus 81 ~ 81 (350)
+
T Consensus 353 ~ 353 (417)
T 2i4i_A 353 L 353 (417)
T ss_dssp C
T ss_pred C
Confidence 5
No 194
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.71 E-value=2.9e-05 Score=75.38 Aligned_cols=43 Identities=33% Similarity=0.349 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
..++++ ..+|++++|+|||||||||+++.+++.... .+|+|..
T Consensus 158 ~L~~l~--~~~ggii~I~GpnGSGKTTlL~allg~l~~-~~g~I~~ 200 (418)
T 1p9r_A 158 NFRRLI--KRPHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILT 200 (418)
T ss_dssp HHHHHH--TSSSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEE
T ss_pred HHHHHH--HhcCCeEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEE
Confidence 344442 378999999999999999999999998854 4677654
No 195
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.70 E-value=9e-05 Score=66.50 Aligned_cols=128 Identities=23% Similarity=0.189 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHH--HHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHh---cccccch
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQI--TQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEF---GCRLGQE 211 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll--~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~---~~~~~~~ 211 (350)
.+.++.+.+..+.+|+-+.+.+++|||||... +.+.........+.+.+..|.+..+....+.+.... +......
T Consensus 66 ~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~ 145 (249)
T 3ber_A 66 PTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVI 145 (249)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEE
Confidence 45667777888888999999999999999863 333222222223456666676655444444333221 2111111
Q ss_pred hhhhh--hcccCCCccccccccChhHHHHHHHHh--hcCCCCcEEEEcCCCccccccc
Q psy9590 212 VGYTI--RFEDCTSSETLIKYMTDGMLLRECLVD--LDLNNYSVIMLDEAHERTIHTD 265 (350)
Q Consensus 212 v~~~~--~~~~~~~~~~~i~~lS~G~~qr~~ia~--all~~~~viIlDEpher~~~~d 265 (350)
.+..- ...........+...|.|...+..... ..+.+.+++|+||+| |.++.+
T Consensus 146 ~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~ 202 (249)
T 3ber_A 146 VGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILNMD 202 (249)
T ss_dssp CTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHHTT
T ss_pred ECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhccC
Confidence 11000 000000112356677888877665442 246788999999998 444333
No 196
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.70 E-value=1.8e-05 Score=74.07 Aligned_cols=72 Identities=10% Similarity=0.222 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++++.+.+.|.+. .+.+..+||+++.+++..+++.-..|..+|++||++++.++.+|++.+||+.+
T Consensus 244 f~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 244 FCKTKRDTKELASMLRDI---------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYH 314 (367)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESS
T ss_pred EECCHHHHHHHHHHHHhc---------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEec
Confidence 677888888877777542 34578899999999999888776778899999999999999999999999876
Q ss_pred c
Q psy9590 81 F 81 (350)
Q Consensus 81 ~ 81 (350)
.
T Consensus 315 ~ 315 (367)
T 1hv8_A 315 L 315 (367)
T ss_dssp C
T ss_pred C
Confidence 5
No 197
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.70 E-value=1.9e-05 Score=68.18 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=25.5
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
++.+|++++|+|+|||||||+++.+.+..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999999999876
No 198
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.69 E-value=5.8e-05 Score=80.97 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhh
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGY 214 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~ 214 (350)
....+.+.+..+..|+-+.+.+|||||||+. +...... ..++.+.+..|.+..+......+...++ +..++.
T Consensus 40 l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~---~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~~ 113 (997)
T 4a4z_A 40 LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH---RNMTKTIYTSPIKALSNQKFRDFKETFD---DVNIGL 113 (997)
T ss_dssp CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH---HTTCEEEEEESCGGGHHHHHHHHHTTC-----CCEEE
T ss_pred CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH---hcCCeEEEEeCCHHHHHHHHHHHHHHcC---CCeEEE
Confidence 5667788899999999999999999999975 3222222 2256777778877766666666654432 112221
Q ss_pred hhhcccCCCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCc
Q psy9590 215 TIRFEDCTSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHE 259 (350)
Q Consensus 215 ~~~~~~~~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEphe 259 (350)
.... .....+..+..+|.|.......... .+.+.++||+||+|.
T Consensus 114 l~G~-~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~ 158 (997)
T 4a4z_A 114 ITGD-VQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHY 158 (997)
T ss_dssp ECSS-CEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTC
T ss_pred EeCC-CccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccc
Confidence 1110 0112335677889998876655443 478899999999993
No 199
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.69 E-value=2.3e-05 Score=72.65 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=28.7
Q ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 146 KAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 146 ~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
..+..|++++|+|+|||||||+++++++... +..|.|..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~ 202 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSE 202 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-CC------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-ccccceec
Confidence 3556799999999999999999999999884 45777765
No 200
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.68 E-value=0.00015 Score=72.48 Aligned_cols=122 Identities=20% Similarity=0.181 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhh--cCCEEEEeCCCCCCHHHH--HHHHHhhcC--C--CCCcEEEEcCCcchhhhhHHHHHHHHhccccc
Q psy9590 138 YKLKHELIKAVS--DNQILIVIGETGSGKTTQ--ITQYLAEAG--F--TARGKIGCTQPRRVAAMSVAKRVAEEFGCRLG 209 (350)
Q Consensus 138 ~~~~~~i~~~i~--~g~v~~liG~nGsGKSTl--l~~l~~~~~--~--~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~ 209 (350)
..++.+.+..+- .|.-+.+.+|||+|||.. ++.+..... . ...+.+.+.-|.+.-+....+.+........+
T Consensus 96 ~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~ 175 (563)
T 3i5x_A 96 TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYG 175 (563)
T ss_dssp CHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccc
Confidence 445556666665 577899999999999974 333322211 1 11235555567655554444444432211100
Q ss_pred chhhhhhhccc----------CCCccccccccChhHHHHHHHH--hhcCCCCcEEEEcCCCc
Q psy9590 210 QEVGYTIRFED----------CTSSETLIKYMTDGMLLRECLV--DLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 210 ~~v~~~~~~~~----------~~~~~~~i~~lS~G~~qr~~ia--~all~~~~viIlDEphe 259 (350)
..........+ .......|...|.|......-. ...+.+.++||+||+|+
T Consensus 176 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 176 LKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp GTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred cCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 00000000000 0011234556777777655433 34688899999999996
No 201
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.68 E-value=3e-05 Score=73.90 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.++.++.+.+++.|.+. ...+..+||+++.+++.++++.-..|..+|++||++++.++.+|++.+||+.+
T Consensus 272 f~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 272 FCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 342 (412)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESS
T ss_pred EeCCHHHHHHHHHHHHhC---------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEEC
Confidence 677888888877777542 34578899999999999998877788899999999999999999999999977
Q ss_pred cee
Q psy9590 81 FVK 83 (350)
Q Consensus 81 ~~k 83 (350)
+..
T Consensus 343 ~p~ 345 (412)
T 3fht_A 343 LPV 345 (412)
T ss_dssp CCB
T ss_pred CCC
Confidence 654
No 202
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.67 E-value=0.00012 Score=64.31 Aligned_cols=120 Identities=18% Similarity=0.124 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHH--HHHHHHhhcCC------CCCcEEEEcCCcchhhhhHHHHHHHHhccccc
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTT--QITQYLAEAGF------TARGKIGCTQPRRVAAMSVAKRVAEEFGCRLG 209 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKST--ll~~l~~~~~~------~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~ 209 (350)
+.++.+.+..+.+|+-+.+.+|+|||||. +++.+...... ..++.+.+.-|.+.-+....+.+.......
T Consensus 44 ~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-- 121 (228)
T 3iuy_A 44 TPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKG-- 121 (228)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTT--
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccC--
Confidence 45666777778888889999999999998 45544433211 123345555576554444444444321110
Q ss_pred chhhhhhhcccCC------CccccccccChhHHHHHHHHhhc-CCCCcEEEEcCCCc
Q psy9590 210 QEVGYTIRFEDCT------SSETLIKYMTDGMLLRECLVDLD-LNNYSVIMLDEAHE 259 (350)
Q Consensus 210 ~~v~~~~~~~~~~------~~~~~i~~lS~G~~qr~~ia~al-l~~~~viIlDEphe 259 (350)
..+.......... .....+...|.|..........+ +.+.+++|+||+|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 178 (228)
T 3iuy_A 122 LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADK 178 (228)
T ss_dssp CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHH
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHH
Confidence 0110000000000 01124556788887775544443 67899999999983
No 203
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.67 E-value=0.0001 Score=64.44 Aligned_cols=122 Identities=16% Similarity=0.088 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhccc-c--cchh
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCR-L--GQEV 212 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~-~--~~~v 212 (350)
+.++.+.+..+.+|+-+.+.+|+|+|||.. ++.+........++.+.+.-|.+..+....+.+....... . +..+
T Consensus 28 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 107 (219)
T 1q0u_A 28 TEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVA 107 (219)
T ss_dssp CHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCE
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEE
Confidence 456666777777888899999999999984 4443333322223456555676544444444333222110 0 0111
Q ss_pred hhhh------hcccCCCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCc
Q psy9590 213 GYTI------RFEDCTSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHE 259 (350)
Q Consensus 213 ~~~~------~~~~~~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEphe 259 (350)
.... ...........+...|.|......-... .+.+.+++|+||+|.
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 161 (219)
T 1q0u_A 108 RCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL 161 (219)
T ss_dssp EEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH
T ss_pred EEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH
Confidence 0000 0000111123466677777766543322 357789999999985
No 204
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.65 E-value=1.7e-05 Score=81.58 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEe--------CCCCCHHHHHcccccCCC-CCeeEEEEeecccceeeec
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPV--------YSALPSEMQTRIFEAAPP-GSRKVVIATNIAETSLTID 71 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl--------~~~l~~~~q~~~~~~~~~-~~rkvilatniaets~ti~ 71 (350)
|.++.++++.+.+.|.+. +....+.+.++ ||+|+.++|.++++.-.. |..+|++||++||.+|.||
T Consensus 404 F~~~~~~~~~l~~~L~~~-----~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip 478 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGN-----PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 478 (696)
T ss_dssp ECSCHHHHHHHHHHHHHC-----TTCCSCCEEC-----------------------------CCSCSEEEESSCCC---C
T ss_pred EeCcHHHHHHHHHHHHhC-----CCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCc
Confidence 778888888877777642 11223556666 669999999999988887 8999999999999999999
Q ss_pred CeEEEeeCCc
Q psy9590 72 GIFYVVDPGF 81 (350)
Q Consensus 72 ~i~~viD~g~ 81 (350)
++.+||+.++
T Consensus 479 ~v~~VI~~d~ 488 (696)
T 2ykg_A 479 QCNLVILYEY 488 (696)
T ss_dssp CCSEEEEESC
T ss_pred cCCEEEEeCC
Confidence 9999997443
No 205
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.65 E-value=4.3e-05 Score=64.00 Aligned_cols=72 Identities=14% Similarity=0.241 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++.+.+.+.|.+. .+.+..+||+++.+++..+++.-..|..+|++||++++..+.+|++.+||+.+
T Consensus 41 F~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 41 FCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYD 111 (163)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESS
T ss_pred EECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeC
Confidence 566677777766666431 35688999999999999888766678889999999999999999999999866
Q ss_pred c
Q psy9590 81 F 81 (350)
Q Consensus 81 ~ 81 (350)
+
T Consensus 112 ~ 112 (163)
T 2hjv_A 112 L 112 (163)
T ss_dssp C
T ss_pred C
Confidence 4
No 206
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.64 E-value=4.2e-05 Score=64.80 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..+..+.+.+.|.+ ..+.+..+||+++.+++..+++.-..|..+|++||++++..+.+|++.+||+.+
T Consensus 40 F~~~~~~~~~l~~~L~~---------~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d 110 (175)
T 2rb4_A 40 FCQTRRNAKWLTVEMIQ---------DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFD 110 (175)
T ss_dssp ECSCHHHHHHHHHHHHT---------TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESS
T ss_pred EECCHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeC
Confidence 56667777666665542 135688899999999999887766678889999999999999999999999866
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
+.
T Consensus 111 ~p 112 (175)
T 2rb4_A 111 LP 112 (175)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 207
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.64 E-value=0.00017 Score=70.08 Aligned_cols=120 Identities=19% Similarity=0.229 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCC-----CCCcEEEEcCCcchhhhhHHHHHHHHhcccccch
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGF-----TARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQE 211 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~-----~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~ 211 (350)
.++...+..+..|.-+.+.+++|||||.. ++++...... .....+.+..|.+--+....+.+.... ...+..
T Consensus 81 ~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~-~~~~~~ 159 (434)
T 2db3_A 81 PIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA-FESYLK 159 (434)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT-TTSSCC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh-ccCCcE
Confidence 34555566677888899999999999983 4444333211 112345555676544444443333221 111111
Q ss_pred hhhhhh------cccCCCccccccccChhHHHHHHHHh-hcCCCCcEEEEcCCCc
Q psy9590 212 VGYTIR------FEDCTSSETLIKYMTDGMLLRECLVD-LDLNNYSVIMLDEAHE 259 (350)
Q Consensus 212 v~~~~~------~~~~~~~~~~i~~lS~G~~qr~~ia~-all~~~~viIlDEphe 259 (350)
+..... ..........+...|-|......-.. ..+.+.+++|+||+|.
T Consensus 160 ~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~ 214 (434)
T 2db3_A 160 IGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADR 214 (434)
T ss_dssp CCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHH
T ss_pred EEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhh
Confidence 110000 00000112345667788776654332 2378899999999995
No 208
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.63 E-value=9.7e-05 Score=72.39 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+...++++.-+.+|++++|.|++|+||||++.+++...
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567777779999999999999999999999888765
No 209
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=0.00011 Score=68.97 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=23.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
.+.|.||+|+||||+++.+.+....+..|.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~ 70 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 70 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEe
Confidence 389999999999999999999432344565544
No 210
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.59 E-value=0.00032 Score=60.32 Aligned_cols=123 Identities=22% Similarity=0.149 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHH--HHHHhhcC---CCCCcEEEEcCCcchhhhhHHHHHHHHhcc-cccc
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQI--TQYLAEAG---FTARGKIGCTQPRRVAAMSVAKRVAEEFGC-RLGQ 210 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll--~~l~~~~~---~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~-~~~~ 210 (350)
...++.+.+..+.+|+-+.+.+|+|+|||... +.+..... ....+.+.+..|.+..+....+.+...... ....
T Consensus 24 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 103 (207)
T 2gxq_A 24 PTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVA 103 (207)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEE
Confidence 34566677777888888999999999999853 33333221 112344566567654444444444433211 0000
Q ss_pred hhhhh-h-hcccCCCccccccccChhHHHHHHHHh-hcCCCCcEEEEcCCCc
Q psy9590 211 EVGYT-I-RFEDCTSSETLIKYMTDGMLLRECLVD-LDLNNYSVIMLDEAHE 259 (350)
Q Consensus 211 ~v~~~-~-~~~~~~~~~~~i~~lS~G~~qr~~ia~-all~~~~viIlDEphe 259 (350)
..+.. . ...........+...|.|...+..-.. ..+.+.+++|+||+|.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 104 VYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE 155 (207)
T ss_dssp ECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH
T ss_pred EECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH
Confidence 00000 0 000000012345556777665554332 2367889999999985
No 211
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.59 E-value=5.6e-05 Score=71.92 Aligned_cols=72 Identities=7% Similarity=0.234 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.++.++++.+.+.|.+. .+.+..+||+++.+++..+++.-..|..+|++||++++.++.+|++.+||+.+
T Consensus 264 f~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 264 FCNSTNRVELLAKKITDL---------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD 334 (400)
T ss_dssp ECSSHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESS
T ss_pred EEecHHHHHHHHHHHHhc---------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeC
Confidence 677888888887777643 24578899999999999988777778899999999999999999999999865
Q ss_pred c
Q psy9590 81 F 81 (350)
Q Consensus 81 ~ 81 (350)
.
T Consensus 335 ~ 335 (400)
T 1s2m_A 335 F 335 (400)
T ss_dssp C
T ss_pred C
Confidence 4
No 212
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.58 E-value=5.3e-05 Score=76.83 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++.+.+.+.|.+. .+.+.++||+|+.+++.++++.-..|..+|++||++++..|.+|+|++||+.+
T Consensus 273 f~~sr~~~e~la~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 273 YCFSQKDSEQVTVSLQNL---------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESS
T ss_pred EeCcHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeC
Confidence 556677777777766542 35688999999999999988777778899999999999999999999999887
Q ss_pred cee
Q psy9590 81 FVK 83 (350)
Q Consensus 81 ~~k 83 (350)
+.+
T Consensus 344 ~p~ 346 (591)
T 2v1x_A 344 MSK 346 (591)
T ss_dssp CCS
T ss_pred CCC
Confidence 664
No 213
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.57 E-value=4.2e-05 Score=70.97 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=30.3
Q ss_pred HHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 145 IKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 145 ~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
+..+..|++++|+|+|||||||++++++ .. .+..|.|..
T Consensus 159 L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~ 197 (302)
T 2yv5_A 159 LVDYLEGFICILAGPSGVGKSSILSRLT-GE-ELRTQEVSE 197 (302)
T ss_dssp HHHHTTTCEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC--
T ss_pred HHhhccCcEEEEECCCCCCHHHHHHHHH-Hh-hCccccccc
Confidence 3455679999999999999999999999 66 345676654
No 214
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.57 E-value=0.00018 Score=63.43 Aligned_cols=123 Identities=18% Similarity=0.084 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhh
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGY 214 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~ 214 (350)
.+.++.+.+..+..|.-+.+.+|+|+|||.. ++.+........++.+.+.-|.+.-+....+.+........+..+..
T Consensus 47 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 126 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHV 126 (230)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEE
Confidence 3456667777788888899999999999975 44443333222234566656765444444444333211100111110
Q ss_pred hh-----hcccCCCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCc
Q psy9590 215 TI-----RFEDCTSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHE 259 (350)
Q Consensus 215 ~~-----~~~~~~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEphe 259 (350)
.. ...........+...|.|......-... .+.+.+++|+||+|.
T Consensus 127 ~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 127 FIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK 177 (230)
T ss_dssp ECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH
T ss_pred EeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH
Confidence 00 0000000123455667777665543322 356788999999984
No 215
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.55 E-value=0.00019 Score=62.57 Aligned_cols=123 Identities=18% Similarity=0.111 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHH--HHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhh
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQIT--QYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYT 215 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~--~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~ 215 (350)
..++.+.+..+.+|.-+.+.+|+|+|||...- .+...........+.+.-|.+..+....+.+........+..+...
T Consensus 38 ~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~ 117 (220)
T 1t6n_A 38 SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVF 117 (220)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEE
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 45666677777778889999999999998543 3222221111235666567554444443333322111001111100
Q ss_pred hh-------cccCCCccccccccChhHHHHHHHHh-hcCCCCcEEEEcCCCcc
Q psy9590 216 IR-------FEDCTSSETLIKYMTDGMLLRECLVD-LDLNNYSVIMLDEAHER 260 (350)
Q Consensus 216 ~~-------~~~~~~~~~~i~~lS~G~~qr~~ia~-all~~~~viIlDEpher 260 (350)
.. ..........+...|.|......-.. ..+.+.+++|+||+|.-
T Consensus 118 ~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 118 FGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp SCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHH
T ss_pred eCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHH
Confidence 00 00000011245556777665544333 24678899999999853
No 216
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.55 E-value=0.0001 Score=68.94 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCC------EEEEeCCCCCCHHHHHHHHHhhcCC-CCCcEE
Q psy9590 140 LKHELIKAVSDNQ------ILIVIGETGSGKTTQITQYLAEAGF-TARGKI 183 (350)
Q Consensus 140 ~~~~i~~~i~~g~------v~~liG~nGsGKSTll~~l~~~~~~-~~~G~i 183 (350)
...++...+..++ +++|+|+|||||||+++++.+.... +.+|.+
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 3445666666666 9999999999999999999988642 234554
No 217
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.55 E-value=4.3e-05 Score=66.00 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++++.+++.|.+. .+.+.++||+++.+++.+++..-..|..+|++||++++..+.+|++.+||+.+
T Consensus 60 F~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 60 FAEKKADVDAIHEYLLLK---------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYD 130 (191)
T ss_dssp ECSCHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESS
T ss_pred EECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeC
Confidence 667778888777777543 25578899999999999888766677889999999999999999999999855
Q ss_pred c
Q psy9590 81 F 81 (350)
Q Consensus 81 ~ 81 (350)
+
T Consensus 131 ~ 131 (191)
T 2p6n_A 131 M 131 (191)
T ss_dssp C
T ss_pred C
Confidence 3
No 218
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.55 E-value=4.3e-05 Score=66.14 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=24.5
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..+|++++|+|+|||||||+++.+.+..
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999999998876
No 219
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.54 E-value=9.7e-05 Score=63.88 Aligned_cols=125 Identities=18% Similarity=0.140 Sum_probs=63.9
Q ss_pred cchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc-----CCCCCcEEEEcCCcchhhhh-HHHHHHHHhccc
Q psy9590 134 SLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEA-----GFTARGKIGCTQPRRVAAMS-VAKRVAEEFGCR 207 (350)
Q Consensus 134 ~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~-----~~~~~G~i~~~~~~~i~~~~-~~~~v~~~~~~~ 207 (350)
.+..+.++.+.+..+..|+-+.+.+|+|+|||...-..+... .....+.+.+.-|.+..+.. ..+.+......
T Consensus 31 ~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~- 109 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 109 (216)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-
T ss_pred CCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-
Confidence 445677777888888888889999999999999765444321 01113455554565433222 22222221111
Q ss_pred ccchhhhhhhcccCC------CccccccccChhHHHHHHHHh-------hcCCCCcEEEEcCCCcc
Q psy9590 208 LGQEVGYTIRFEDCT------SSETLIKYMTDGMLLRECLVD-------LDLNNYSVIMLDEAHER 260 (350)
Q Consensus 208 ~~~~v~~~~~~~~~~------~~~~~i~~lS~G~~qr~~ia~-------all~~~~viIlDEpher 260 (350)
+..+.......... .....+...|.+...+..... ..+.+.+++|+||+|.-
T Consensus 110 -~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~ 174 (216)
T 3b6e_A 110 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT 174 (216)
T ss_dssp -TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---
T ss_pred -CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhh
Confidence 00110000000000 011334556666666554432 34678899999999965
No 220
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.54 E-value=0.00017 Score=71.96 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHH--HHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhh--
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTT--QITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVG-- 213 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKST--ll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~-- 213 (350)
...+.+++..+.+|+-+.+++|||+|||. +++.+.. .|.+.+.-|.+.-.......+.. ++.......+
T Consensus 27 r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~aL~~q~~~~l~~-~gi~~~~l~~~~ 99 (523)
T 1oyw_A 27 RPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLISLMKDQVDQLQA-NGVAAACLNSTQ 99 (523)
T ss_dssp CTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHHHHHHHHHHHHH-TTCCEEEECTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChHHHHHHHHHHHHH-cCCcEEEEeCCC
Confidence 34566777888888889999999999998 5555432 35555545644333333333322 2221100000
Q ss_pred ---hhhh-cccCCCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCcccc
Q psy9590 214 ---YTIR-FEDCTSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHERTI 262 (350)
Q Consensus 214 ---~~~~-~~~~~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEpher~~ 262 (350)
.... ..........+.+.|.+.......... -..+.+++|+||+|+.+-
T Consensus 100 ~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~ 153 (523)
T 1oyw_A 100 TREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQ 153 (523)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCT
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCc
Confidence 0000 000001112344455554432111111 236889999999998653
No 221
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.53 E-value=0.00024 Score=67.46 Aligned_cols=122 Identities=18% Similarity=0.107 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHH--HHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhh
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQI--TQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGY 214 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll--~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~ 214 (350)
.+.++.+.+..+..|+-+.+.+|+|+|||... +.+........++.+.+.-|.+..+....+.+..... ..+..+..
T Consensus 44 ~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~~ 122 (400)
T 1s2m_A 44 PSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGK-HCGISCMV 122 (400)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT-TTTCCEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhc-ccCceEEE
Confidence 34566667777777888999999999999854 3333332222234555556765544444444433221 11111110
Q ss_pred hhh------cccCCCccccccccChhHHHHHHHHh-hcCCCCcEEEEcCCCc
Q psy9590 215 TIR------FEDCTSSETLIKYMTDGMLLRECLVD-LDLNNYSVIMLDEAHE 259 (350)
Q Consensus 215 ~~~------~~~~~~~~~~i~~lS~G~~qr~~ia~-all~~~~viIlDEphe 259 (350)
... ..........+...|.|......... ..+.+.+++|+||+|.
T Consensus 123 ~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~ 174 (400)
T 1s2m_A 123 TTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK 174 (400)
T ss_dssp ECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHH
T ss_pred EeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchH
Confidence 000 00001122356677888776654433 3467889999999994
No 222
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.53 E-value=5.5e-05 Score=64.63 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=25.3
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
|++++|+|+|||||||+++.+.+.. +|.+.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~----~g~~~i 32 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL----DNSAYI 32 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS----SSEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc----CCeEEE
Confidence 6789999999999999999998632 565544
No 223
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.52 E-value=0.00019 Score=67.04 Aligned_cols=123 Identities=23% Similarity=0.209 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhcC-CEEEEeCCCCCCHHHHHHHHHhhc-CCCCCcEEEEcCCcchhhhhHHHHHHHHhccc---ccchh
Q psy9590 138 YKLKHELIKAVSDN-QILIVIGETGSGKTTQITQYLAEA-GFTARGKIGCTQPRRVAAMSVAKRVAEEFGCR---LGQEV 212 (350)
Q Consensus 138 ~~~~~~i~~~i~~g-~v~~liG~nGsGKSTll~~l~~~~-~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~---~~~~v 212 (350)
..++.+.+..+-.| .-+.+.+|+|+|||+..-..+... ....+..+.+..|.+..+....+.+....+.. .....
T Consensus 30 ~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 109 (367)
T 1hv8_A 30 TDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIY 109 (367)
T ss_dssp CHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEEC
T ss_pred CHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 34455555555556 688899999999998754433322 11223456665676655455555554433221 00000
Q ss_pred h-hhhhcccCCCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCcc
Q psy9590 213 G-YTIRFEDCTSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHER 260 (350)
Q Consensus 213 ~-~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEpher 260 (350)
+ ...........+..+...|.+...+...... .+.+.+++|+||+|.-
T Consensus 110 ~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~ 159 (367)
T 1hv8_A 110 GGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM 159 (367)
T ss_dssp TTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHH
T ss_pred CCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHh
Confidence 0 0000000000123455677777766554433 3678899999999974
No 224
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.51 E-value=5.3e-05 Score=66.13 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=25.6
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
++|++++|+|||||||||+++.++...+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999998763
No 225
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.51 E-value=0.00011 Score=75.32 Aligned_cols=123 Identities=19% Similarity=0.176 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHh--hcCC--CCCcEEEEcCCcchhhhhHHHHHHHHh---cccccc
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLA--EAGF--TARGKIGCTQPRRVAAMSVAKRVAEEF---GCRLGQ 210 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~--~~~~--~~~G~i~~~~~~~i~~~~~~~~v~~~~---~~~~~~ 210 (350)
..++.+++..+..|+-+.+.+|+|+|||+..-..+. .... ..++.+.+..|.+..+......+.... +.....
T Consensus 15 r~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 94 (696)
T 2ykg_A 15 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTG 94 (696)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEE
T ss_pred cHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEE
Confidence 456667777777788899999999999996544433 1111 112566665665433333333333222 221111
Q ss_pred hhhhhhhcc--cCCCccccccccChhHHHHHHHHhhc--CCCCcEEEEcCCCcc
Q psy9590 211 EVGYTIRFE--DCTSSETLIKYMTDGMLLRECLVDLD--LNNYSVIMLDEAHER 260 (350)
Q Consensus 211 ~v~~~~~~~--~~~~~~~~i~~lS~G~~qr~~ia~al--l~~~~viIlDEpher 260 (350)
..|..-... ........+...|.|...+......+ +.+.++||+||+|+.
T Consensus 95 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~ 148 (696)
T 2ykg_A 95 ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT 148 (696)
T ss_dssp ECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGC
T ss_pred EeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcc
Confidence 111000000 00001245778899998887665544 678899999999994
No 226
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.50 E-value=0.00011 Score=67.89 Aligned_cols=118 Identities=21% Similarity=0.218 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHh---cccccchhhh
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEF---GCRLGQEVGY 214 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~---~~~~~~~v~~ 214 (350)
+.++.+.+..+.+|+-+.+.+|+|+|||...-..+... ++.+.+..|.+..+....+.+.... +.......+.
T Consensus 18 ~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 93 (337)
T 2z0m_A 18 TEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGG 93 (337)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTT
T ss_pred CHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECC
Confidence 45666677778888899999999999998654444332 3345555676554444444443321 1111110110
Q ss_pred hhhccc-CCCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCc
Q psy9590 215 TIRFED-CTSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHE 259 (350)
Q Consensus 215 ~~~~~~-~~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEphe 259 (350)
.-.... ....+..+...|.+...+..-... .+.+.+++|+||+|.
T Consensus 94 ~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 140 (337)
T 2z0m_A 94 MPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADL 140 (337)
T ss_dssp SCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHH
T ss_pred cchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHH
Confidence 000000 000123466778887776544332 257789999999995
No 227
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.48 E-value=0.00016 Score=72.51 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=28.5
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
+|+.++|+||||+||||+++.+.+....+ .+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~i~~ 141 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK-FVRISL 141 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE-EEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC-eEEEEe
Confidence 68999999999999999999999987432 444444
No 228
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.48 E-value=4e-05 Score=65.80 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+...+.+.+.+.|.+. .+.+.++||+++.+++.++++.-..|..+|++||++++..+.+|++.+||+.+
T Consensus 52 F~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 52 FVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFD 122 (185)
T ss_dssp EESCHHHHHHHHHHHHHT---------TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESS
T ss_pred EECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeC
Confidence 456666666666666431 35688999999999988887666677889999999999999999999999855
Q ss_pred c
Q psy9590 81 F 81 (350)
Q Consensus 81 ~ 81 (350)
+
T Consensus 123 ~ 123 (185)
T 2jgn_A 123 L 123 (185)
T ss_dssp C
T ss_pred C
Confidence 3
No 229
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.48 E-value=8.3e-05 Score=74.47 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+...+.+.+++.|.+... ..+.+..+||+|+.+++.++++.-..|..+|++||++++..|.+|+|.+||..+
T Consensus 345 F~~s~~~~~~l~~~L~~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 345 FAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIG 418 (563)
T ss_dssp ECSCHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEES
T ss_pred EcCcHHHHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEEC
Confidence 67778888888888876532 135688999999999999988766678899999999999999999999999766
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
..
T Consensus 419 ~p 420 (563)
T 3i5x_A 419 VP 420 (563)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 230
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.47 E-value=8.5e-05 Score=62.88 Aligned_cols=72 Identities=15% Similarity=0.284 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++.+.+.+.|.+. .+.+.++||+++.+++..+++.-..|..+|++||++++..+.+|++.+||..+
T Consensus 37 F~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 37 FVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 107 (172)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESS
T ss_pred EECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEEC
Confidence 556666676666666431 35578899999999999888766678889999999999999999999999855
Q ss_pred c
Q psy9590 81 F 81 (350)
Q Consensus 81 ~ 81 (350)
+
T Consensus 108 ~ 108 (172)
T 1t5i_A 108 M 108 (172)
T ss_dssp C
T ss_pred C
Confidence 4
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.45 E-value=1.6e-05 Score=74.08 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=26.1
Q ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 146 KAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 146 ~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
.++.+|++++|+|+||+|||||++.+++... +..|.|..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~ 206 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISE 206 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-ccccceee
Confidence 4677899999999999999999999998774 34666654
No 232
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.45 E-value=9.6e-05 Score=63.90 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=30.7
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEE
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKI 183 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i 183 (350)
......+|++++|+|++||||||+.+.+.+... ..|.+
T Consensus 18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~ 55 (200)
T 3uie_A 18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKL 55 (200)
T ss_dssp HHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCC
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCce
Confidence 344567899999999999999999999998774 24544
No 233
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.45 E-value=0.00013 Score=78.80 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHH-HHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHh---cc----cccc
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTT-QITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEF---GC----RLGQ 210 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKST-ll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~---~~----~~~~ 210 (350)
.++...+..+..|+-+.+.+|||||||+ +++.+.... ..++.+.+..|.+.-+....+.+.... +. ..+.
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~--~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~ 136 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLA--LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGY 136 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHH--TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEE
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEE
Confidence 7777788888899999999999999995 344444433 224455555676655555544444322 11 1110
Q ss_pred hhhhhh-----hcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 211 EVGYTI-----RFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 211 ~v~~~~-----~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
..|..- ........ ..+...|.|......-. +.+.+++|+||+|+
T Consensus 137 ~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~ 186 (1054)
T 1gku_B 137 YHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---LGHFDFIFVDDVDA 186 (1054)
T ss_dssp CCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---SCCCSEEEESCHHH
T ss_pred EeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---hccCCEEEEeChhh
Confidence 011000 00000011 34566777777654322 66899999999997
No 234
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.45 E-value=8e-05 Score=74.36 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++++.+.+.|.+. .+.+.++||+|+.+++.++++.-..|..+|++||++++..|.+|+|++||+.+
T Consensus 242 f~~sr~~~e~l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 242 YCNSRAKVEDTAARLQSK---------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred EeCCHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC
Confidence 566778888777777542 35688999999999999888776778899999999999999999999999876
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
..
T Consensus 313 ~p 314 (523)
T 1oyw_A 313 IP 314 (523)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 235
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.45 E-value=8e-05 Score=71.18 Aligned_cols=72 Identities=14% Similarity=0.320 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++++.+.+.|.+. .+.+..+||+++.+++.++++.-..|..+|++||++++..+.+|++.+||+.+
T Consensus 282 f~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~ 352 (410)
T 2j0s_A 282 FCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYD 352 (410)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESS
T ss_pred EEcCHHHHHHHHHHHHhC---------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEEC
Confidence 667778887777766542 34578899999999999888776678889999999999999999999999866
Q ss_pred c
Q psy9590 81 F 81 (350)
Q Consensus 81 ~ 81 (350)
.
T Consensus 353 ~ 353 (410)
T 2j0s_A 353 L 353 (410)
T ss_dssp C
T ss_pred C
Confidence 4
No 236
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.45 E-value=0.0004 Score=61.52 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHH--HHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhh
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQIT--QYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYT 215 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~--~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~ 215 (350)
..++.+.+..+..|.-+.+.+|+|+|||...- .+...........+.+..|.+..+....+.+... +...+..+...
T Consensus 54 ~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~~~~ 132 (237)
T 3bor_A 54 SAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL-GDYMGATCHAC 132 (237)
T ss_dssp CHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH-TTTTTCCEEEE
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHH-hhhcCceEEEE
Confidence 45566677777788889999999999997632 2222221112345666567655444444433322 11111111000
Q ss_pred h-------hcccCCCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCc
Q psy9590 216 I-------RFEDCTSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHE 259 (350)
Q Consensus 216 ~-------~~~~~~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEphe 259 (350)
. ...........+...|.|......-... .+.+.+++|+||+|.
T Consensus 133 ~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 133 IGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp CC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH
T ss_pred ECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH
Confidence 0 0000001113455667777665543332 356789999999984
No 237
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.44 E-value=0.00014 Score=70.10 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=72.6
Q ss_pred chhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhh
Q psy9590 135 LPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGY 214 (350)
Q Consensus 135 lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~ 214 (350)
+..+.++.+.+..+..+ -+.+.+++|+|||.+.-.++........+.+.+.-|.+.......+.+....+... ..+..
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~-~~v~~ 85 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPP-EKIVA 85 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCG-GGEEE
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcch-hheEE
Confidence 44566777788888888 77899999999999876555432111245666666765444444454544433210 01110
Q ss_pred hhhcccCC--------CccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCccc
Q psy9590 215 TIRFEDCT--------SSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHERT 261 (350)
Q Consensus 215 ~~~~~~~~--------~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEpher~ 261 (350)
+.+.. .....+...|.+...+...... ...+.+++|+||+|.-.
T Consensus 86 ---~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~ 138 (494)
T 1wp9_A 86 ---LTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAV 138 (494)
T ss_dssp ---ECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCS
T ss_pred ---eeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccC
Confidence 00000 0123456677887777655433 37789999999999654
No 238
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00018 Score=77.21 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhh
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTI 216 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~ 216 (350)
...++.+.+..+..|+-+.+.+|||||||...-..+... ...++.+.+..|.+.-+......+...++ .++...
T Consensus 87 L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~-l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-----~vgllt 160 (1010)
T 2xgj_A 87 LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQKYRELLAEFG-----DVGLMT 160 (1010)
T ss_dssp CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHHS-----CEEEEC
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-hccCCeEEEECChHHHHHHHHHHHHHHhC-----CEEEEe
Confidence 456677778888889999999999999999753222221 12356777777876555555555555444 222211
Q ss_pred hcccCCCccccccccChhHHHHHHHHh-hcCCCCcEEEEcCCC
Q psy9590 217 RFEDCTSSETLIKYMTDGMLLRECLVD-LDLNNYSVIMLDEAH 258 (350)
Q Consensus 217 ~~~~~~~~~~~i~~lS~G~~qr~~ia~-all~~~~viIlDEph 258 (350)
. ......+..+..+|.|......... ..+.+.+++|+||+|
T Consensus 161 G-d~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH 202 (1010)
T 2xgj_A 161 G-DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH 202 (1010)
T ss_dssp S-SCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGG
T ss_pred C-CCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechh
Confidence 0 0011123456778888877655443 456788999999999
No 239
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.43 E-value=0.001 Score=62.69 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=22.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.+.|.||+|+||||+++.+.....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999998763
No 240
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=8.7e-05 Score=64.12 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=25.5
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGF 177 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~ 177 (350)
..+++...+.++++++|+|++||||||+.+.+....+.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 35678888999999999999999999999999877643
No 241
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.42 E-value=3.9e-05 Score=82.29 Aligned_cols=75 Identities=16% Similarity=0.030 Sum_probs=59.0
Q ss_pred EEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCCceeeeeeeccccccccccccCCCCccchhh
Q psy9590 31 ILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWKK 110 (350)
Q Consensus 31 ~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr 110 (350)
+.++||+|++.+|..++..-..|..||++||++++.+|.+|+ +.||..+..| ||... ..|+|...-.|+.
T Consensus 402 i~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~~------~~~~s~~~y~Qr~ 471 (997)
T 4a4z_A 402 IAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGNG------LRELTPGEFTQMA 471 (997)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETTE------EEECCHHHHHHHH
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEecccc---ccCcc------CCCCCHHHHhHHh
Confidence 788999999999999998888899999999999999999999 5666667665 55442 2256655556666
Q ss_pred hhcCC
Q psy9590 111 HVIGG 115 (350)
Q Consensus 111 ~~~~~ 115 (350)
+++|+
T Consensus 472 GRAGR 476 (997)
T 4a4z_A 472 GRAGR 476 (997)
T ss_dssp GGGCC
T ss_pred ccccc
Confidence 66664
No 242
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.42 E-value=7.4e-06 Score=73.00 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=26.7
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
++++|+|||||||||+++++.+... +.+|.|.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~-~~~G~i~~ 60 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI-PDLTLLHF 60 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS-CCTTTC--
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc-cCCCeEEE
Confidence 4678999999999999999999984 55777765
No 243
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.41 E-value=0.00016 Score=69.48 Aligned_cols=118 Identities=12% Similarity=0.074 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhh
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTI 216 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~ 216 (350)
.+.++.+.+..+..|+-+.+.+|||||||... ++........++.+.+..|.+.-+....+.+..... .+..+....
T Consensus 22 ~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~-l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~~~~ 98 (414)
T 3oiy_A 22 LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFG-MMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD--EKVKIFGFY 98 (414)
T ss_dssp CCHHHHHHHHHHTTTCCEECCSCSSSSHHHHH-HHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC--SSCCEEECC
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHH-HHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc--CCceEEEEE
Confidence 45677788888888988999999999999832 222111112345666666766555555555544211 111111110
Q ss_pred hc----------ccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCC
Q psy9590 217 RF----------EDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAH 258 (350)
Q Consensus 217 ~~----------~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEph 258 (350)
.. ......+..+...|.|...... ......+.+++|+||+|
T Consensus 99 g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l-~~~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 99 SSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR-EKLSQKRFDFVFVDDVD 149 (414)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCH-HHHTTCCCSEEEESCHH
T ss_pred CCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHH-HHhccccccEEEEeChH
Confidence 00 0000111345566777665432 23456799999999999
No 244
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.41 E-value=0.00033 Score=68.11 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=53.5
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE--cCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCccccc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC--TQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLI 228 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~--~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i 228 (350)
+.+++++|++|+||||++..+...... .++++.+ .++.+.++......++...+.+. ......
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~----------~~~~~~---- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV----------YGEPNN---- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE----------ECCTTC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCccchhHHHHHHHHHHhcCCce----------eecccc----
Confidence 569999999999999999988887643 3555533 24555554433333333332211 000000
Q ss_pred cccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 229 KYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 229 ~~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
...-...+..++.+...+++++|+|+|--
T Consensus 162 --~dp~~i~~~al~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 162 --QNPIEIAKKGVDIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp --SCHHHHHHHHHHHTTTTTCSEEEEEECCC
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 01111223356666678999999999943
No 245
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.40 E-value=5.5e-05 Score=67.10 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.6
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~ 174 (350)
..+|++++|.|+|||||||+++.+.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999999998876
No 246
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.38 E-value=0.00013 Score=70.83 Aligned_cols=73 Identities=23% Similarity=0.270 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++.+.+.+.|.+. .+.+..+||+++.+++.++++.-..|..+|++||++|+..+.+|+|.+||+.+
T Consensus 306 F~~t~~~a~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d 376 (434)
T 2db3_A 306 FVETKRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYD 376 (434)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESS
T ss_pred EEeCcHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEEC
Confidence 667777777777666542 35578899999999999988777778899999999999999999999999866
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
+.
T Consensus 377 ~p 378 (434)
T 2db3_A 377 MP 378 (434)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 247
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.38 E-value=0.00033 Score=64.05 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=47.4
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCcccccc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIK 229 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i~ 229 (350)
.+..+.|.||+|+||||+++.+....+ ..........+ ....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~----~~~~~i~~~~l---------------------------~~~~------- 94 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS----ATFLNISAASL---------------------------TSKY------- 94 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT----CEEEEEESTTT---------------------------SSSS-------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC----CCeEEeeHHHH---------------------------hhcc-------
Confidence 467899999999999999999988652 12111000000 0000
Q ss_pred ccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 230 YMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 230 ~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
.-+++...+..+..+...+|.+|++||+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 124 (297)
T 3b9p_A 95 VGDGEKLVRALFAVARHMQPSIIFIDEVDS 124 (297)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred cchHHHHHHHHHHHHHHcCCcEEEeccHHH
Confidence 013566777777777788999999999954
No 248
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.37 E-value=0.00035 Score=61.67 Aligned_cols=121 Identities=20% Similarity=0.137 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHH--HHHHhhcC----CCCCcEEEEcCCcchhhhhHHHHHHHHhcccccc
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQI--TQYLAEAG----FTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQ 210 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll--~~l~~~~~----~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~ 210 (350)
...++.+.+..+..|+-+.+.+|+|+|||... +.+..... ...+..+.+..|.+..+....+.+.... ...+.
T Consensus 48 ~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~ 126 (236)
T 2pl3_A 48 VTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG-KNHDF 126 (236)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT-TTSSC
T ss_pred CCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh-CCCCe
Confidence 35566777778888888999999999999853 33322211 0113345555676554444444333221 11111
Q ss_pred hhhhhhhccc-----CCCccccccccChhHHHHHHHHh--hcCCCCcEEEEcCCC
Q psy9590 211 EVGYTIRFED-----CTSSETLIKYMTDGMLLRECLVD--LDLNNYSVIMLDEAH 258 (350)
Q Consensus 211 ~v~~~~~~~~-----~~~~~~~i~~lS~G~~qr~~ia~--all~~~~viIlDEph 258 (350)
.+........ ....+..+...|.|...+..-.. ..+.+.+++|+||+|
T Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 181 (236)
T 2pl3_A 127 SAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 181 (236)
T ss_dssp CEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH
T ss_pred eEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH
Confidence 1110000000 00012345567778776654432 346788999999998
No 249
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.37 E-value=0.00019 Score=67.88 Aligned_cols=122 Identities=18% Similarity=0.174 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHH--HHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhc---ccccchh
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQI--TQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFG---CRLGQEV 212 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll--~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~---~~~~~~v 212 (350)
+.++.+.+..+..|.-+.+.+|+|+|||... +.+........++.+.+.-|.+.-+....+.+..... .......
T Consensus 45 ~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 124 (394)
T 1fuu_A 45 SAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI 124 (394)
T ss_dssp CHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEEC
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEe
Confidence 4556667777777888899999999999853 3333332222344666666765444444433332211 1111000
Q ss_pred hhhhhcccC-CCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCc
Q psy9590 213 GYTIRFEDC-TSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHE 259 (350)
Q Consensus 213 ~~~~~~~~~-~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEphe 259 (350)
+..-..... ...+..+...|.|...+...... .+.+.+++|+||+|.
T Consensus 125 g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 125 GGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 173 (394)
T ss_dssp SSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred CCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH
Confidence 000000000 00123456677777666544332 367889999999997
No 250
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.36 E-value=0.00011 Score=61.65 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=24.2
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.+.+++|+|++||||||+.+.+.+..+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998764
No 251
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.36 E-value=0.00023 Score=67.07 Aligned_cols=103 Identities=11% Similarity=0.104 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHH-HHHhcccccchhhhhh
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRV-AEEFGCRLGQEVGYTI 216 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v-~~~~~~~~~~~v~~~~ 216 (350)
+.-.+.++.-+.+|+++.|.|++|+||||++..++..... .++.+.+... .+.......++ +...+.... . +
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSl-Ems~~ql~~Rlls~~~~v~~~-~----l 105 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSL-EMSAEQLALRALSDLTSINMH-D----L 105 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEES-SSCHHHHHHHHHHHHHCCCHH-H----H
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC-CCCHHHHHHHHHHHhhCCCHH-H----H
Confidence 3446667777999999999999999999999888765432 2445544211 12222222332 222222110 0 0
Q ss_pred hcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 217 RFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 217 ~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
+-..||+++.+|+..|...+.+.+++|.|+|
T Consensus 106 ----------~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~ 136 (338)
T 4a1f_A 106 ----------ESGRLDDDQWENLAKCFDHLSQKKLFFYDKS 136 (338)
T ss_dssp ----------HHTCCCHHHHHHHHHHHHHHHHSCEEEECCT
T ss_pred ----------hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCC
Confidence 0124889999999888888888889999987
No 252
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.35 E-value=0.0007 Score=60.29 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhh
Q psy9590 136 PIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYT 215 (350)
Q Consensus 136 pi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~ 215 (350)
....++.+.+..+..+.-+.+.|++|+|||.+.-.++... .+.+.+.-|.+.......+.+.. ++.. .++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~-~~~~---~v~~- 163 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEE---YVGE- 163 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGG-GCGG---GEEE-
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHh-CCCC---eEEE-
Confidence 3455666667767677778999999999999876555443 33444444543222222222221 2111 0111
Q ss_pred hhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 216 IRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 216 ~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
+.+.......+...|.+...+. ...+..++++||+||.|.-
T Consensus 164 --~~g~~~~~~~i~v~T~~~l~~~--~~~~~~~~~llIiDEaH~l 204 (237)
T 2fz4_A 164 --FSGRIKELKPLTVSTYDSAYVN--AEKLGNRFMLLIFDEVHHL 204 (237)
T ss_dssp --ESSSCBCCCSEEEEEHHHHHHT--HHHHTTTCSEEEEECSSCC
T ss_pred --EeCCCCCcCCEEEEeHHHHHhh--HHHhcccCCEEEEECCccC
Confidence 1111111233444444443332 2234567999999999864
No 253
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.46 E-value=2.9e-05 Score=65.53 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=48.7
Q ss_pred CeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCCce
Q psy9590 28 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPGFV 82 (350)
Q Consensus 28 ~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g~~ 82 (350)
.+.+..+||+++.+++..++..-..|..+|++||++++..+.+|++.+||+.++.
T Consensus 54 ~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p 108 (170)
T 2yjt_D 54 GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMP 108 (170)
Confidence 3567889999999999999887778888999999999999999999999986643
No 254
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.33 E-value=0.00028 Score=69.53 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=46.6
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCccccccccC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIKYMT 232 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~lS 232 (350)
-+.|.||+|+||||+++.+.+..+.+ -+.+... . .+ .... =.
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~---f~~is~~-~--------------------~~-------~~~~-------g~ 92 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVP---FFHISGS-D--------------------FV-------ELFV-------GV 92 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGG-G--------------------TT-------TCCT-------TH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC---eeeCCHH-H--------------------HH-------HHHh-------cc
Confidence 38899999999999999999876322 1111000 0 00 0000 02
Q ss_pred hhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 233 DGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 233 ~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
++.++|..+..+....|.+|++||+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 567788888999889999999999965
No 255
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.33 E-value=0.00012 Score=61.98 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.0
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+.+| +.+|+|+|||||||++..+.+...
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 3456 999999999999999999988653
No 256
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.33 E-value=0.00035 Score=78.74 Aligned_cols=119 Identities=19% Similarity=0.144 Sum_probs=65.7
Q ss_pred HHHHHHHHHh-hcCCEEEEeCCCCCCHHHHHHHHHh--hcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhh
Q psy9590 139 KLKHELIKAV-SDNQILIVIGETGSGKTTQITQYLA--EAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYT 215 (350)
Q Consensus 139 ~~~~~i~~~i-~~g~v~~liG~nGsGKSTll~~l~~--~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~ 215 (350)
.++.+.+..+ +.++-+.+.+|||||||+..-..+. +. ...++++.+..|.+.-+......+...++...+..|+..
T Consensus 929 piQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~-~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~l 1007 (1724)
T 4f92_B 929 PIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLL-QSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLL 1007 (1724)
T ss_dssp HHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEEC
T ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHH-hCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEE
Confidence 3555666666 5677899999999999997543332 22 123567777778665554444445444443333333221
Q ss_pred hh---cccCCCccccccccChhHHHHHH---HHhhcCCCCcEEEEcCCC
Q psy9590 216 IR---FEDCTSSETLIKYMTDGMLLREC---LVDLDLNNYSVIMLDEAH 258 (350)
Q Consensus 216 ~~---~~~~~~~~~~i~~lS~G~~qr~~---ia~all~~~~viIlDEph 258 (350)
.. .......+..+.-+|.|...-+. ..+..+.+-+++|+||.|
T Consensus 1008 tGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 1008 TGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp CSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred ECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 10 00000011234455666542221 123456788999999999
No 257
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.33 E-value=0.00021 Score=67.61 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++.+.+.+.|.+. .+.+..+||+++.+++..+++.-..|..+|++||++++..+.+|++.+||..+
T Consensus 256 f~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 326 (391)
T 1xti_A 256 FVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 326 (391)
T ss_dssp ECSCHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESS
T ss_pred EeCcHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 567777777777766542 24578899999999999888776778899999999999999999999999866
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
..
T Consensus 327 ~p 328 (391)
T 1xti_A 327 MP 328 (391)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 258
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.32 E-value=0.0004 Score=64.95 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=30.2
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
..++++++++|+||+||||++..+.+.... .+|++.+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVll 138 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLI 138 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEE
Confidence 456789999999999999999999987743 4666655
No 259
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.31 E-value=3.3e-05 Score=73.13 Aligned_cols=72 Identities=15% Similarity=0.389 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++++.+++.|.+ ..+.+..+||+++.+++..+++.-..|..+|++||++++..+.+|++.+||+.+
T Consensus 265 f~~~~~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 265 FCNTRRKVEELTTKLRN---------DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EECCHHHHHHHHHHHHH---------cCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 45555566555555532 135688899999999999998877788899999999999999999999999866
Q ss_pred c
Q psy9590 81 F 81 (350)
Q Consensus 81 ~ 81 (350)
.
T Consensus 336 ~ 336 (394)
T 1fuu_A 336 L 336 (394)
T ss_dssp -
T ss_pred C
Confidence 5
No 260
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.31 E-value=0.00015 Score=65.38 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhc---CCEEEEeCCCCCCHHHHHHHHHhhcCC
Q psy9590 139 KLKHELIKAVSD---NQILIVIGETGSGKTTQITQYLAEAGF 177 (350)
Q Consensus 139 ~~~~~i~~~i~~---g~v~~liG~nGsGKSTll~~l~~~~~~ 177 (350)
.+.+++...+.+ |++++|+|++||||||+.+.+....++
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 467888899999 999999999999999999999886643
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.31 E-value=0.00014 Score=63.18 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=24.7
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+|++++|+|||||||||+++.+++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999998753
No 262
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.31 E-value=0.00071 Score=62.46 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhcC--CEEEEeCCCCCCHHHH--HHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhh
Q psy9590 139 KLKHELIKAVSDN--QILIVIGETGSGKTTQ--ITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGY 214 (350)
Q Consensus 139 ~~~~~i~~~i~~g--~v~~liG~nGsGKSTl--l~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~ 214 (350)
.++...+..+..| .-+.+.+++|||||.. ++++...........+.+.-|.+--+......+........+..+..
T Consensus 117 ~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~ 196 (300)
T 3fmo_B 117 KIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAY 196 (300)
T ss_dssp HHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 3455566667665 7889999999999975 45554443222222455555655444444333332211111111111
Q ss_pred hhhccc---CCCccccccccChhHHHHHHHHh--hcCCCCcEEEEcCCCc
Q psy9590 215 TIRFED---CTSSETLIKYMTDGMLLRECLVD--LDLNNYSVIMLDEAHE 259 (350)
Q Consensus 215 ~~~~~~---~~~~~~~i~~lS~G~~qr~~ia~--all~~~~viIlDEphe 259 (350)
...... .......|.-.|-|......... .-+.+.++||+||+|.
T Consensus 197 ~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 197 AVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp ESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred EeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 111111 11112346667888776655432 2267889999999974
No 263
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.31 E-value=0.00022 Score=68.21 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
.+.+++...+++|++++|.||+||||||+++.+.+.. +|.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~----~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC----GGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH----CCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc----CCcEEE
Confidence 4556777889999999999999999999999999865 456554
No 264
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.31 E-value=0.00078 Score=59.42 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=25.3
Q ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 146 KAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 146 ~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
--+.+|++++|.|+|||||||++.+++...
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999977776543
No 265
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.29 E-value=0.00015 Score=73.05 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++.+.+++.|.+... ..+.+..+||+++.+++.++++.-..|..+|++||++++..|-+|+|.+||..+
T Consensus 294 F~~t~~~~~~l~~~L~~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~ 367 (579)
T 3sqw_A 294 FAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIG 367 (579)
T ss_dssp ECSSHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEES
T ss_pred ECCcHHHHHHHHHHHHHhhc------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcC
Confidence 67778888888888876532 135688899999999999887666668889999999999999999999999866
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
..
T Consensus 368 ~p 369 (579)
T 3sqw_A 368 VP 369 (579)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 266
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.29 E-value=0.00013 Score=61.26 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=24.1
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+|++++|+|++||||||+.+.+.+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 358899999999999999999988765
No 267
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.28 E-value=0.0001 Score=63.89 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=29.7
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
..++.+++|+|++||||||+++.+.+... +.+|.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~-~~~~~v~~ 55 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR-EQGISVCV 55 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCeEEE
Confidence 45688999999999999999999998763 23566654
No 268
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.27 E-value=0.00013 Score=65.18 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.6
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHH
Q psy9590 150 DNQILIVIGETGSGKTTQITQYL 172 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~ 172 (350)
.+++++|+|+|||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999999
No 269
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.24 E-value=0.00032 Score=63.38 Aligned_cols=121 Identities=21% Similarity=0.180 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcC----CCCCcEEEEcCCcchhhhhHHHHHHHHhcccccch
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAG----FTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQE 211 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~----~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~ 211 (350)
..++.+.+..+..|+-+.+.+|+|||||.. ++++..... ...++.+.+.-|.+.-+....+.+..... ..+..
T Consensus 78 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-~~~~~ 156 (262)
T 3ly5_A 78 TEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT-HHVHT 156 (262)
T ss_dssp CHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT-TCCSC
T ss_pred CHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh-hcCce
Confidence 445566666777788889999999999984 443332221 11234555556766555554444443221 11111
Q ss_pred hhhhhhccc------CCCccccccccChhHHHHHHHHhh--cCCCCcEEEEcCCCc
Q psy9590 212 VGYTIRFED------CTSSETLIKYMTDGMLLRECLVDL--DLNNYSVIMLDEAHE 259 (350)
Q Consensus 212 v~~~~~~~~------~~~~~~~i~~lS~G~~qr~~ia~a--ll~~~~viIlDEphe 259 (350)
+........ .......+...|.|.......... .+.+.+++|+||+|.
T Consensus 157 ~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~ 212 (262)
T 3ly5_A 157 YGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR 212 (262)
T ss_dssp EEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH
Confidence 111000000 000113456677787766555432 467899999999983
No 270
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.23 E-value=0.00035 Score=63.63 Aligned_cols=122 Identities=12% Similarity=-0.021 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhh
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTI 216 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~ 216 (350)
...++.+.+..+-.+.-..|.+++|+|||...-.++........+.+.+.-|.+.-+....+.+... +......+....
T Consensus 114 l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~-~~~~~~~~~~~~ 192 (282)
T 1rif_A 114 PHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY-RLFSHAMIKKIG 192 (282)
T ss_dssp CCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHH-TSCCGGGEEECS
T ss_pred ccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh-cccccceEEEEe
Confidence 3444555555444455567899999999998744333211112347766667554333333434322 211111111110
Q ss_pred hcccCC---CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 217 RFEDCT---SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 217 ~~~~~~---~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
...... .....+.-.|.+...+. ....+.+.+++|+||+|.-.
T Consensus 193 ~~~~~~~~~~~~~~I~v~T~~~l~~~--~~~~~~~~~~vIiDEaH~~~ 238 (282)
T 1rif_A 193 GGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLAT 238 (282)
T ss_dssp TTCSSTTCCCTTCSEEEECHHHHTTS--CGGGGGGEEEEEEETGGGCC
T ss_pred CCCcchhhhccCCcEEEEchHHHHhh--HHHHHhhCCEEEEECCccCC
Confidence 000000 02233444455433221 12356788999999998754
No 271
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.21 E-value=0.00065 Score=64.78 Aligned_cols=119 Identities=19% Similarity=0.141 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHH--HHHHHHhhcCC------------------CCCcEEEEcCCcchhhhhHH
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTT--QITQYLAEAGF------------------TARGKIGCTQPRRVAAMSVA 197 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKST--ll~~l~~~~~~------------------~~~G~i~~~~~~~i~~~~~~ 197 (350)
..++.+.+..+..|+-+.+.+|||||||. +++.+...... .....+.+..|.+..+....
T Consensus 39 ~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 118 (417)
T 2i4i_A 39 TPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 118 (417)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHH
T ss_pred CHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHH
Confidence 44566667778888889999999999997 44444332110 01124555567655544444
Q ss_pred HHHHHHhc---cccc-----chhhhhhhcccCCCccccccccChhHHHHHHHHhhc-CCCCcEEEEcCCCc
Q psy9590 198 KRVAEEFG---CRLG-----QEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLD-LNNYSVIMLDEAHE 259 (350)
Q Consensus 198 ~~v~~~~~---~~~~-----~~v~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~al-l~~~~viIlDEphe 259 (350)
+.+..... .... ......... ......+...|.|...+..-...+ +.+.+++|+||+|.
T Consensus 119 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~ 186 (417)
T 2i4i_A 119 EEARKFSYRSRVRPCVVYGGADIGQQIRD---LERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR 186 (417)
T ss_dssp HHHHHHHTTSSCCEEEECSSSCHHHHHHH---HTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHH
T ss_pred HHHHHHhCcCCceEEEEECCCCHHHHHHH---hhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhH
Confidence 44433221 1110 000000000 011235667788888776554443 77889999999996
No 272
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.18 E-value=0.00099 Score=62.99 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=29.3
Q ss_pred HHHHHH--HhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 141 KHELIK--AVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 141 ~~~i~~--~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+.++. -+.+|+++.|.|++||||||++.+++...
T Consensus 49 LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 49 LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455555 67799999999999999999998888655
No 273
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.13 E-value=0.00096 Score=72.62 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=37.3
Q ss_pred HHHHHHhhcCC--EEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHH
Q psy9590 142 HELIKAVSDNQ--ILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEE 203 (350)
Q Consensus 142 ~~i~~~i~~g~--v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~ 203 (350)
..++..+.+|. -+.+.|++|+|||...-..+... ...+..+.+.-|.+..+....+.+...
T Consensus 613 ~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~-~~~g~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 613 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VDNHKQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp HHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH-HTTTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH-HHhCCeEEEEechHHHHHHHHHHHHHH
Confidence 34555555576 78999999999997643222111 122457777678776655555555543
No 274
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.13 E-value=0.00024 Score=63.97 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.6
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~ 174 (350)
.+|++++|+|++||||||+++.+...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999999933
No 275
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=97.12 E-value=0.0012 Score=64.45 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=64.8
Q ss_pred cchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccch-h
Q psy9590 134 SLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQE-V 212 (350)
Q Consensus 134 ~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~-v 212 (350)
.+..+.++.+.+..+..+.-+.|.+++|+|||.+.-..+... ++.+.+.-|.+.......+.+.. ++ .. +
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~-~~----~~~v 161 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FG----EEYV 161 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGG-GC----GGGE
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHh-CC----Ccce
Confidence 345677788888888888889999999999999865444433 33455545653333333232222 22 22 2
Q ss_pred hhhhhcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 213 GYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 213 ~~~~~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
+.. .+.......+...|.+...+.. ..+..+.++||+||.|.
T Consensus 162 ~~~---~g~~~~~~~Ivv~T~~~l~~~~--~~~~~~~~liIvDEaH~ 203 (472)
T 2fwr_A 162 GEF---SGRIKELKPLTVSTYDSAYVNA--EKLGNRFMLLIFDEVHH 203 (472)
T ss_dssp EEB---SSSCBCCCSEEEEEHHHHHHTH--HHHTTTCSEEEEETGGG
T ss_pred EEE---CCCcCCcCCEEEEEcHHHHHHH--HHhcCCCCEEEEECCcC
Confidence 211 1111222345555655544322 23456799999999997
No 276
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.11 E-value=0.00011 Score=67.81 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.++.++++.+.+.|. .+..+||+++.+++.++++.-..|..+|++||++++.++.+|++.+||+.+
T Consensus 226 f~~~~~~~~~l~~~l~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 226 FVRTRNRVAKLVRLFD-------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp ECSCHHHHHHHHTTCT-------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred EEcCHHHHHHHHHHhh-------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec
Confidence 5566666655443331 267899999999999988777778899999999999999999999999866
Q ss_pred c
Q psy9590 81 F 81 (350)
Q Consensus 81 ~ 81 (350)
.
T Consensus 293 ~ 293 (337)
T 2z0m_A 293 A 293 (337)
T ss_dssp C
T ss_pred C
Confidence 4
No 277
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.11 E-value=0.00089 Score=66.12 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHH--hhcCCC--CCcEEEEcCCcchhhhhHHHHHHHHh---cccccc
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYL--AEAGFT--ARGKIGCTQPRRVAAMSVAKRVAEEF---GCRLGQ 210 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~--~~~~~~--~~G~i~~~~~~~i~~~~~~~~v~~~~---~~~~~~ 210 (350)
..++.+.+..+..|+-+.+.+|+|+|||...-..+ .....+ .++.+.+.-|.+.-+......+...+ +.....
T Consensus 6 ~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 85 (555)
T 3tbk_A 6 RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIAS 85 (555)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred cHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEE
Confidence 44566667777778889999999999997643222 222111 14556555665443333333333222 222111
Q ss_pred hhhhhhhccc--CCCccccccccChhHHHHHHHHhh--cCCCCcEEEEcCCCccc
Q psy9590 211 EVGYTIRFED--CTSSETLIKYMTDGMLLRECLVDL--DLNNYSVIMLDEAHERT 261 (350)
Q Consensus 211 ~v~~~~~~~~--~~~~~~~i~~lS~G~~qr~~ia~a--ll~~~~viIlDEpher~ 261 (350)
..+..-.... .......+...|.|...+..-... .+.+.+++|+||+|.-.
T Consensus 86 ~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~ 140 (555)
T 3tbk_A 86 ISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTS 140 (555)
T ss_dssp ECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCS
T ss_pred EcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccC
Confidence 1111100000 000123455678888776654433 36778999999999853
No 278
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.09 E-value=7.8e-05 Score=73.17 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++.+.+.+.|.+. ...+..+||+++.+++.++++.-..|..+|++||++++..+.+|+|.+||+.+
T Consensus 339 F~~s~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d 409 (479)
T 3fmp_B 339 FCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 409 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCcHHHHHHHHHHHHhC---------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEec
Confidence 455555555544444321 35678899999999999999888889999999999999999999999999877
Q ss_pred cee
Q psy9590 81 FVK 83 (350)
Q Consensus 81 ~~k 83 (350)
+..
T Consensus 410 ~p~ 412 (479)
T 3fmp_B 410 LPV 412 (479)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 279
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.09 E-value=0.0011 Score=58.87 Aligned_cols=122 Identities=18% Similarity=0.076 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCC-----CCCcEEEEcCCcchhhhhHHHHHHH---Hhccc
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGF-----TARGKIGCTQPRRVAAMSVAKRVAE---EFGCR 207 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~-----~~~G~i~~~~~~~i~~~~~~~~v~~---~~~~~ 207 (350)
+.++.+.+..+..|+-+.+.+|+|||||.. ++.+...... ..++.+.+.-|.+.-+....+.+.. ..+..
T Consensus 53 ~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~ 132 (242)
T 3fe2_A 53 TAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLK 132 (242)
T ss_dssp CHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCce
Confidence 445666677777888899999999999975 4444433211 1233455545655444343333322 11211
Q ss_pred ccchhhhh-hh-cccCCCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCc
Q psy9590 208 LGQEVGYT-IR-FEDCTSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHE 259 (350)
Q Consensus 208 ~~~~v~~~-~~-~~~~~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEphe 259 (350)
.....+.. .. ..........+...|.|......-... .+.+.+++|+||+|.
T Consensus 133 ~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 187 (242)
T 3fe2_A 133 STCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADR 187 (242)
T ss_dssp EEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHH
T ss_pred EEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHH
Confidence 11000000 00 000000112455667777765554333 377889999999983
No 280
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.08 E-value=0.00031 Score=65.87 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=27.9
Q ss_pred HHHHHHHhhcC-------CEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 141 KHELIKAVSDN-------QILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 141 ~~~i~~~i~~g-------~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
++++...+..| +.++|.||||+||||+++.+.+..
T Consensus 34 ~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 34 KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 44445555544 789999999999999999999876
No 281
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.05 E-value=0.0016 Score=57.96 Aligned_cols=121 Identities=20% Similarity=0.097 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHH--HHHHHhhcCC---------CCCcEEEEcCCcchhhhhHHHHHHHHhcc
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQ--ITQYLAEAGF---------TARGKIGCTQPRRVAAMSVAKRVAEEFGC 206 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTl--l~~l~~~~~~---------~~~G~i~~~~~~~i~~~~~~~~v~~~~~~ 206 (350)
..++.+.+..+..|.-+.+.+|+|+|||.. ++.+...... ...+.+.+.-|.+..+....+.+.....
T Consensus 47 ~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~- 125 (253)
T 1wrb_A 47 TPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSL- 125 (253)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhc-
Confidence 345556667777788899999999999974 4433332211 1123455545655444443333332211
Q ss_pred cccchhhhhhhcc------cCCCccccccccChhHHHHHHHHhh-cCCCCcEEEEcCCCc
Q psy9590 207 RLGQEVGYTIRFE------DCTSSETLIKYMTDGMLLRECLVDL-DLNNYSVIMLDEAHE 259 (350)
Q Consensus 207 ~~~~~v~~~~~~~------~~~~~~~~i~~lS~G~~qr~~ia~a-ll~~~~viIlDEphe 259 (350)
..+..+....... ........+...|.|......-... .+.+.+++|+||+|.
T Consensus 126 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 185 (253)
T 1wrb_A 126 NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR 185 (253)
T ss_dssp TSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH
T ss_pred cCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH
Confidence 1000000000000 0001123455677777665543332 367889999999985
No 282
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.98 E-value=0.00074 Score=63.45 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.2
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+..+.|.|++|+||||+++.+....
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999988765
No 283
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=96.97 E-value=0.0019 Score=63.90 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHH--hhcCCC--CCcEEEEcCCcchhhhhHHHHHHHHh---cccccc
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYL--AEAGFT--ARGKIGCTQPRRVAAMSVAKRVAEEF---GCRLGQ 210 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~--~~~~~~--~~G~i~~~~~~~i~~~~~~~~v~~~~---~~~~~~ 210 (350)
..++.+.+..+..|.-+.+.+|+|+|||...-..+ .....+ ..+.+.+.-|.+.-+......+...+ +.....
T Consensus 9 ~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 88 (556)
T 4a2p_A 9 RSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQG 88 (556)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 44566677777778889999999999997643222 222111 14456555665443333333333322 221111
Q ss_pred hhhhhhhccc--CCCccccccccChhHHHHHHHHhh--cCCCCcEEEEcCCCccc
Q psy9590 211 EVGYTIRFED--CTSSETLIKYMTDGMLLRECLVDL--DLNNYSVIMLDEAHERT 261 (350)
Q Consensus 211 ~v~~~~~~~~--~~~~~~~i~~lS~G~~qr~~ia~a--ll~~~~viIlDEpher~ 261 (350)
..+..-.... .......+...|.|...+..-... .+.+.+++|+||+|.-.
T Consensus 89 ~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~ 143 (556)
T 4a2p_A 89 ISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT 143 (556)
T ss_dssp CCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCS
T ss_pred EeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccC
Confidence 1110000000 000123455677887776554433 47788999999999754
No 284
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.97 E-value=0.0004 Score=60.79 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.7
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.+.+++|+|++||||||+.+.+.+..+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988764
No 285
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.95 E-value=0.0027 Score=63.88 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhh--cCCEEEEeCCCCCCHHHH--HHHHHhhcC--C--CCCcEEEEcCCcchhhhhHHHHHHHHhccccc
Q psy9590 138 YKLKHELIKAVS--DNQILIVIGETGSGKTTQ--ITQYLAEAG--F--TARGKIGCTQPRRVAAMSVAKRVAEEFGCRLG 209 (350)
Q Consensus 138 ~~~~~~i~~~i~--~g~v~~liG~nGsGKSTl--l~~l~~~~~--~--~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~ 209 (350)
..++.+.+..+- .|.-+.+.+|||+|||.. ++++..... . .....+.+.-|.+.-+......+........+
T Consensus 45 ~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~ 124 (579)
T 3sqw_A 45 TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYG 124 (579)
T ss_dssp CHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhccc
Confidence 445666666665 677889999999999983 443333221 1 11235555567655544444444432211000
Q ss_pred ch-------hhh---hhhcccCCCccccccccChhHHHHHHHH--hhcCCCCcEEEEcCCCc
Q psy9590 210 QE-------VGY---TIRFEDCTSSETLIKYMTDGMLLRECLV--DLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 210 ~~-------v~~---~~~~~~~~~~~~~i~~lS~G~~qr~~ia--~all~~~~viIlDEphe 259 (350)
.. .+. .............|...|.|......-. ...+.+.++||+||+|+
T Consensus 125 ~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 125 LKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp GTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred ccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 00 000 0000000011234556777777655433 34688999999999996
No 286
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.95 E-value=0.0004 Score=71.31 Aligned_cols=126 Identities=19% Similarity=0.170 Sum_probs=69.0
Q ss_pred cchhHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc-----CCCCCcEEEEcCCcchhhhhH-HHHHHHHhcc-
Q psy9590 134 SLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEA-----GFTARGKIGCTQPRRVAAMSV-AKRVAEEFGC- 206 (350)
Q Consensus 134 ~lpi~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~-----~~~~~G~i~~~~~~~i~~~~~-~~~v~~~~~~- 206 (350)
.+..+.++.+.+..+..|.-+.+.+|+|+|||...-..+... .....+.+.+..|.+.-+... ...+....+.
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 345566777888888888889999999999998654333221 111125565556765444444 4444433321
Q ss_pred -cccchhhhhhhcc--cCCCccccccccChhHHHHHHHH-------hhcCCCCcEEEEcCCCc
Q psy9590 207 -RLGQEVGYTIRFE--DCTSSETLIKYMTDGMLLRECLV-------DLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 207 -~~~~~v~~~~~~~--~~~~~~~~i~~lS~G~~qr~~ia-------~all~~~~viIlDEphe 259 (350)
......+..-... ........+...|.|...+.... ...+.+.++||+||+|.
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~ 147 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 147 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc
Confidence 1111111100000 00002245667788887765421 23467899999999994
No 287
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.95 E-value=0.00028 Score=70.76 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=31.5
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
.+.+|++++|+|+|||||||+++++.+......++.+.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~ 403 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTL 403 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEE
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEE
Confidence 467899999999999999999999999875432236653
No 288
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.91 E-value=0.00038 Score=60.21 Aligned_cols=31 Identities=29% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 145 IKAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 145 ~~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
...+..+.+++|+|++||||||+.+.+.+..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4457788999999999999999999988865
No 289
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.90 E-value=0.0012 Score=61.36 Aligned_cols=103 Identities=8% Similarity=0.055 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE-cCCcchhhhhHHHHHHH-Hhcccccchhhhhh
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC-TQPRRVAAMSVAKRVAE-EFGCRLGQEVGYTI 216 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~-~~~~~i~~~~~~~~v~~-~~~~~~~~~v~~~~ 216 (350)
.-.++++.-+.+|+++.|.|++|+||||++-+++...... +..+.+ +.. ........++.. ..+.... .
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~slE--~s~~~l~~R~~~~~~~i~~~----~-- 126 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE--MGKKENIKRLIVTAGSINAQ----K-- 126 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEESS--SCHHHHHHHHHHHHTTCCHH----H--
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEECC--CCHHHHHHHHHHHHcCCCHH----H--
Confidence 3466677679999999999999999999998887654222 234433 211 122222223221 1121110 0
Q ss_pred hcccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 217 RFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 217 ~~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
+. .. . ..||.++.+++..|...+.+..+++.|+|
T Consensus 127 -l~---~~-~--~~l~~~~~~~l~~a~~~l~~~~i~i~d~~ 160 (315)
T 3bh0_A 127 -IK---AA-R--RDFASEDWGKLSMAIGEISNSNINIFDKA 160 (315)
T ss_dssp -HH---SC-H--HHHCSSCHHHHHHHHHHHHTSCEEEECCS
T ss_pred -Hh---cC-C--CCCCHHHHHHHHHHHHHHhCCCEEEECCC
Confidence 00 00 0 12667777777766666666677777765
No 290
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.90 E-value=0.0017 Score=61.48 Aligned_cols=45 Identities=24% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHHHHH--HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 140 LKHELIK--AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 140 ~~~~i~~--~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
-.+.++. -+..|+++.|.||+||||||++.+++..... .+|.+.+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~Vly 94 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAF 94 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEE
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEE
Confidence 3455554 5778999999999999999999999987633 3555544
No 291
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.88 E-value=0.0005 Score=59.48 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=25.4
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+..|.+++|+|++||||||+.+.+....
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 46688999999999999999999988765
No 292
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.87 E-value=0.00095 Score=65.82 Aligned_cols=122 Identities=12% Similarity=0.000 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhh
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTI 216 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~ 216 (350)
...++.+.+..+..+.-..|.|++|+|||...-.++...-....+.+.+.-|.+.-+....+.+.. ++......+....
T Consensus 114 l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~-~~~~~~~~v~~~~ 192 (510)
T 2oca_A 114 PHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD-YRLFSHAMIKKIG 192 (510)
T ss_dssp CCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHH-TTSSCGGGEEECG
T ss_pred CCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHH-hhcCCccceEEEe
Confidence 344555556666566778999999999999864333321111245777766765443333343322 2111111111111
Q ss_pred hcccCC---CccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 217 RFEDCT---SSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 217 ~~~~~~---~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
...... .....+...|.+...+- ....+.+.++||+||.|.-.
T Consensus 193 ~~~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~~~ 238 (510)
T 2oca_A 193 GGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLAT 238 (510)
T ss_dssp GGCCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGGCC
T ss_pred cCCccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcCCC
Confidence 111110 01233444444432211 12456778999999999754
No 293
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.80 E-value=0.00068 Score=65.78 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=26.2
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCC
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGF 177 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~ 177 (350)
+..+++++|+|||||||||++..+.+....
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 456899999999999999999999987743
No 294
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.80 E-value=0.0031 Score=57.04 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.8
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..+.-+.|.||+|+||||+++.+....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 566789999999999999999988765
No 295
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.80 E-value=0.0057 Score=57.33 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.3
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..+..+.|.||+|+||||+++.+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999888764
No 296
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.78 E-value=0.00059 Score=64.22 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEE
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIG 184 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~ 184 (350)
.+++++.....++.+++++|++|+||||+++.+++.... .++++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~-~~~~v~ 88 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR-EGLKVA 88 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEE
Confidence 445566667788999999999999999999999987632 245443
No 297
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.75 E-value=0.00069 Score=57.79 Aligned_cols=23 Identities=22% Similarity=0.654 Sum_probs=21.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++|+|+|||||||+++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999865
No 298
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.74 E-value=0.00083 Score=56.63 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=23.8
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+|.+++|+|++||||||+.+.+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998865
No 299
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.73 E-value=0.0022 Score=58.96 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=25.3
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+..+..+.|.||+|+||||+++.+....
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4678889999999999999999999876
No 300
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.72 E-value=0.0032 Score=58.65 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=29.8
Q ss_pred HHHHHH-HHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 140 LKHELI-KAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 140 ~~~~i~-~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..+.++ --+..|+++.|.|++|+||||++.+++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 345555 368899999999999999999999888764
No 301
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.70 E-value=0.00069 Score=64.30 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.1
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLA 173 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~ 173 (350)
.+.+| +++|+|||||||||++..+.+
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 45567 999999999999999999886
No 302
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.69 E-value=0.00084 Score=57.93 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHh
Q psy9590 153 ILIVIGETGSGKTTQITQYLA 173 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~ 173 (350)
+++|+|++||||||+.+.+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999877
No 303
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.69 E-value=0.00091 Score=57.24 Aligned_cols=23 Identities=22% Similarity=0.654 Sum_probs=21.0
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++|+|+||+||||+++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 304
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.67 E-value=0.0085 Score=58.28 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=50.8
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEE--EEcCCcchhhhhHHHHHHHHhcccccchhhhhhhcccCCCccccc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAGFTARGKI--GCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLI 228 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i--~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~i 228 (350)
..+++++|++|+||||++..+...+.. .+.++ ...++.+.++......++...+.+. .......
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv----------~~~~~~~--- 165 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV----------FGNPQEK--- 165 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE----------ECCTTCC---
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE----------EecCCCC---
Confidence 469999999999999999888876532 22233 3335666665444444443333221 0000000
Q ss_pred cccChhHHHHHHHHhhcCCCCcEEEEcCC
Q psy9590 229 KYMTDGMLLRECLVDLDLNNYSVIMLDEA 257 (350)
Q Consensus 229 ~~lS~G~~qr~~ia~all~~~~viIlDEp 257 (350)
......+-++..+-..+++++|+|.|
T Consensus 166 ---dp~~i~~~al~~a~~~~~DvVIIDTa 191 (443)
T 3dm5_A 166 ---DAIKLAKEGVDYFKSKGVDIIIVDTA 191 (443)
T ss_dssp ---CHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred ---CHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 11111223344555567999999998
No 305
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.66 E-value=0.0051 Score=57.81 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHHHH-HhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 140 LKHELIK-AVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 140 ~~~~i~~-~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-.+.++. -++.|+++.|.|++||||||++.+++...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3555553 68899999999999999999999888763
No 306
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.65 E-value=0.001 Score=54.85 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=20.4
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 152 QILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~ 174 (350)
.+.+|+|||||||||++..+...
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988753
No 307
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=96.63 E-value=0.0021 Score=69.67 Aligned_cols=119 Identities=12% Similarity=0.076 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhh
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTI 216 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~ 216 (350)
...++...+..+-.|+-+.+.++||||||+.. ++........++.+.+.-|.+..+....+.+.. ++ ..+..+....
T Consensus 79 pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~-l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v~~l~ 155 (1104)
T 4ddu_A 79 LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFG-MMTALWLARKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKIFGFY 155 (1104)
T ss_dssp CCHHHHHHHHHHTTTCCEEECCSTTCCHHHHH-HHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCEEEEC
T ss_pred CCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHH-HHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeEEEEe
Confidence 45567777888888988999999999999943 222211112345566666776655555555544 22 1111111111
Q ss_pred hcccC----------CCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCc
Q psy9590 217 RFEDC----------TSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259 (350)
Q Consensus 217 ~~~~~----------~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEphe 259 (350)
..... ...+..+...|.|...+..- ..-+.+.+++|+||+|.
T Consensus 156 Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~-~l~~~~l~~lViDEaH~ 207 (1104)
T 4ddu_A 156 SSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE-KLSQKRFDFVFVDDVDA 207 (1104)
T ss_dssp TTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHH-HHHTSCCSEEEESCHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHH-hhcccCcCEEEEeCCCc
Confidence 10000 00113455567777654432 24477999999999994
No 308
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.61 E-value=0.00093 Score=63.13 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=27.6
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
+.+++|+|++||||||+++.+++... +.+|++.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~-~~~~~v~V 107 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT-ERGHKLSV 107 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh-hcCCeEEE
Confidence 67999999999999999999998763 33555544
No 309
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.60 E-value=0.00057 Score=70.10 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCC--------CCHHHHHcccccCCCCCeeEEEEeecccceeeecC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSA--------LPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDG 72 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~--------l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~ 72 (350)
|.+..+..+.+.+.|.+. ..+ ....+.+.++||+ |+.++|.++++.-..|..+|++||++++..|.+|+
T Consensus 406 F~~s~~~~~~l~~~L~~~-~~l--~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 406 FTKTRQSAYALSQWITEN-EKF--AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp ECSCHHHHHHHHHHHHSS-CSC--C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EECcHHHHHHHHHHHHhC-ccc--cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 556667776666666432 000 1124778899999 99999999988777888999999999999999999
Q ss_pred eEEEeeCC
Q psy9590 73 IFYVVDPG 80 (350)
Q Consensus 73 i~~viD~g 80 (350)
+.+||.-+
T Consensus 483 v~~VI~~d 490 (699)
T 4gl2_A 483 CNIVIRYG 490 (699)
T ss_dssp CCCCEEES
T ss_pred CCEEEEeC
Confidence 99999433
No 310
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.58 E-value=0.0052 Score=56.65 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=27.3
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
+.+++++|++|+||||++..+.+.... .++++.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l 131 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGL 131 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEE
Confidence 679999999999999999999887643 3555544
No 311
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.58 E-value=0.00069 Score=60.54 Aligned_cols=106 Identities=21% Similarity=0.147 Sum_probs=57.6
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh---hhHHHHHHHHhcc--------cccchhhhh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA---MSVAKRVAEEFGC--------RLGQEVGYT 215 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~---~~~~~~v~~~~~~--------~~~~~v~~~ 215 (350)
.+..| ++|.|||||||||+++.+.+... .|.+.+... .+.. ......+...+.. ...+++...
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l 120 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS-DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 120 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH-HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHH-HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhh
Confidence 34555 89999999999999999998863 456655321 1100 0011112111110 111222111
Q ss_pred hhcccC----CC------ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 216 IRFEDC----TS------SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 216 ~~~~~~----~~------~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
...... .. .+..+..||+|++|+..++.++..+|++ +|++--|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~r 173 (254)
T 1ixz_A 121 GRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALLR 173 (254)
T ss_dssp HC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG--SCGGGGS
T ss_pred hcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh--CCHHHcC
Confidence 100000 00 1133457888998888889999888886 6877444
No 312
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.57 E-value=0.00019 Score=71.20 Aligned_cols=73 Identities=14% Similarity=0.236 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+..++.+.+.+.|.+ ....+..+||+++.+++..+++.-..|..+|++||+++++++.+|++.+||+.+
T Consensus 363 F~~s~~~a~~l~~~L~~---------~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~ 433 (508)
T 3fho_A 363 FCKKKDTAEEIARRMTA---------DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433 (508)
T ss_dssp BCSSTTTTTHHHHHHTT---------TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--
T ss_pred EECCHHHHHHHHHHHHh---------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEEC
Confidence 55555555555554432 134577899999999999998877788899999999999999999999999766
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
..
T Consensus 434 ~p 435 (508)
T 3fho_A 434 MP 435 (508)
T ss_dssp --
T ss_pred CC
Confidence 44
No 313
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.0019 Score=60.38 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCCE--EEEeCCCCCCHHHHHHHHHhhc
Q psy9590 139 KLKHELIKAVSDNQI--LIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v--~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+.+.+...++.|++ +.+.||+|+||||+++.+.+..
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 355677788889988 9999999999999999998875
No 314
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.00094 Score=71.70 Aligned_cols=76 Identities=17% Similarity=0.037 Sum_probs=61.4
Q ss_pred EEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCCceeeeeeeccccccccccccCCCCccchhh
Q psy9590 31 ILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQDLPEWKK 110 (350)
Q Consensus 31 ~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g~~k~~~~~~~~~~~~l~~~~iSk~~~~~rr 110 (350)
|..+||+|+++++..++..-..|..||++||++++..|.+|++.+||++ ...||... ..|.|...-.|+.
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------~rp~s~~~y~Qr~ 478 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------FRWVSGGEYIQMS 478 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------EEECCHHHHHHHH
T ss_pred eeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------CccCCHHHHhHhh
Confidence 7789999999999999877777999999999999999999999999984 34566543 3456666667777
Q ss_pred hhcCCC
Q psy9590 111 HVIGGK 116 (350)
Q Consensus 111 ~~~~~k 116 (350)
+++|+.
T Consensus 479 GRAGR~ 484 (1010)
T 2xgj_A 479 GRAGRR 484 (1010)
T ss_dssp TTBCCT
T ss_pred hhcccC
Confidence 777654
No 315
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.55 E-value=0.0012 Score=55.80 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=23.0
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..|.+++|.|++||||||+.+.+....
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999887654
No 316
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.53 E-value=0.0012 Score=56.79 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHh
Q psy9590 153 ILIVIGETGSGKTTQITQYLA 173 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~ 173 (350)
+++|+|++||||||+.+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999988
No 317
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.52 E-value=0.0081 Score=58.16 Aligned_cols=43 Identities=26% Similarity=0.272 Sum_probs=31.6
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc--CCcchhh
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT--QPRRVAA 193 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~--~~~~i~~ 193 (350)
++++++++|++||||||++..+.+... ..++++.+. ++.+.++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~~r~aa 141 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAA 141 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCSSCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeeccccCchh
Confidence 467999999999999999999998874 335665442 3444443
No 318
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.49 E-value=0.0053 Score=64.20 Aligned_cols=124 Identities=16% Similarity=0.174 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHH--hhcCCC--CCcEEEEcCCcchhhhhHHHHHHHHh---cccccc
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYL--AEAGFT--ARGKIGCTQPRRVAAMSVAKRVAEEF---GCRLGQ 210 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~--~~~~~~--~~G~i~~~~~~~i~~~~~~~~v~~~~---~~~~~~ 210 (350)
..++.+.+..+..|.-+.+.+|+|+|||...-..+ .....+ ..+.+.+.-|.+.-+......+...+ +.....
T Consensus 250 ~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 329 (797)
T 4a2q_A 250 RSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQG 329 (797)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEE
Confidence 44566677777778889999999999997643332 222111 14556665675533333333333222 221111
Q ss_pred hhhhhhhcc--cCCCccccccccChhHHHHHHHHhh--cCCCCcEEEEcCCCccc
Q psy9590 211 EVGYTIRFE--DCTSSETLIKYMTDGMLLRECLVDL--DLNNYSVIMLDEAHERT 261 (350)
Q Consensus 211 ~v~~~~~~~--~~~~~~~~i~~lS~G~~qr~~ia~a--ll~~~~viIlDEpher~ 261 (350)
-.+..-... ........+...|.|...+..-... .+.+.++||+||+|.-.
T Consensus 330 ~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~ 384 (797)
T 4a2q_A 330 ISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT 384 (797)
T ss_dssp ECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCS
T ss_pred EeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccC
Confidence 111000000 0000123456678887766554333 35678999999999743
No 319
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.46 E-value=0.0013 Score=63.14 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=25.6
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~ 174 (350)
.+..|..++|+|+||+||||+++++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5678999999999999999999999993
No 320
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.46 E-value=0.0019 Score=57.25 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=29.6
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCT 186 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~ 186 (350)
+..|.+++|.|++||||||+++.+...... ++.+..+
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMT 59 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCceee
Confidence 447899999999999999999999887743 4555443
No 321
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.44 E-value=0.001 Score=60.42 Aligned_cols=106 Identities=21% Similarity=0.121 Sum_probs=58.2
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh---hhHHHHH---HHHhc-----ccccchhhhh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA---MSVAKRV---AEEFG-----CRLGQEVGYT 215 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~---~~~~~~v---~~~~~-----~~~~~~v~~~ 215 (350)
.+..| ++|+|||||||||+++.+.+... .|.+.+... .+.. ......+ .+... ....+.+...
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l 144 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS-DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 144 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH-HHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHH
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHH-HHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhh
Confidence 34555 89999999999999999999863 456655311 1100 0011111 11111 1111222111
Q ss_pred hhcccC----CC------ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 216 IRFEDC----TS------SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 216 ~~~~~~----~~------~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
...... .. ....+..||+|++|+..++.++..+|++ +|++--|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~l~r 197 (278)
T 1iy2_A 145 GRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALLR 197 (278)
T ss_dssp HCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS--SCHHHHS
T ss_pred hcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh--CCHhHcC
Confidence 000000 00 0133557899999999999999999987 7776433
No 322
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.42 E-value=0.013 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.2
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
...-+.|.||+|+||||+++.+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999988765
No 323
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.40 E-value=0.0017 Score=55.80 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.6
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
..+++|+|++||||||+.+.+....+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999887653
No 324
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=96.40 E-value=0.0074 Score=64.34 Aligned_cols=125 Identities=16% Similarity=0.149 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc-CCCC---CcEEEEcCCcchhhhhHHHHHHHHh---ccccc
Q psy9590 137 IYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEA-GFTA---RGKIGCTQPRRVAAMSVAKRVAEEF---GCRLG 209 (350)
Q Consensus 137 i~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~-~~~~---~G~i~~~~~~~i~~~~~~~~v~~~~---~~~~~ 209 (350)
...++.+.+..+..|.-+.+.+++|+|||...-..+... .... ++.+.+.-|.+.-+......+...+ +....
T Consensus 249 ~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 328 (936)
T 4a2w_A 249 ARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQ 328 (936)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred CCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEE
Confidence 345666777777788889999999999997643333222 1111 4556665665433333333333222 22211
Q ss_pred chhhhhhhccc--CCCccccccccChhHHHHHHHHhhc--CCCCcEEEEcCCCccc
Q psy9590 210 QEVGYTIRFED--CTSSETLIKYMTDGMLLRECLVDLD--LNNYSVIMLDEAHERT 261 (350)
Q Consensus 210 ~~v~~~~~~~~--~~~~~~~i~~lS~G~~qr~~ia~al--l~~~~viIlDEpher~ 261 (350)
...+..-.... .......+...|.|...+..-...+ +.+.++||+||+|.-.
T Consensus 329 ~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~ 384 (936)
T 4a2w_A 329 GISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT 384 (936)
T ss_dssp EECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCS
T ss_pred EEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccC
Confidence 11110000000 0001234567788887776544333 5678999999999643
No 325
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.37 E-value=0.0021 Score=55.85 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=26.5
Q ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 146 KAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 146 ~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..+..|.+++|.|++||||||+.+.+....
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999999988765
No 326
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.33 E-value=0.0053 Score=59.77 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.1
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+..+.|.||+|+||||+++.+....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999988765
No 327
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.32 E-value=0.0074 Score=53.29 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.3
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+|.++.+.|+.|+||||++-.++...
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999887766654
No 328
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.32 E-value=0.0021 Score=54.40 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=27.3
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEE
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIG 184 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~ 184 (350)
.+|.+++|.|++||||||+.+.+...... .++.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~-~~~~~~ 45 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK-EGYRVE 45 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEE
Confidence 36889999999999999999998877632 244443
No 329
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.30 E-value=0.0015 Score=62.78 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCC--------CCCHHHHHcccccCCCCCeeEEEEeecccceeeecC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYS--------ALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDG 72 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~--------~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~ 72 (350)
|.+..+.++.+.+.|.+. .+.+..+|| +++.+++..+++.-..|..+|++||++++.++.+|+
T Consensus 367 F~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~ 437 (494)
T 1wp9_A 367 FTNYRETAKKIVNELVKD---------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPE 437 (494)
T ss_dssp ECSCHHHHHHHHHHHHHT---------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTT
T ss_pred EEccHHHHHHHHHHHHHc---------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchh
Confidence 566666776666666532 356788999 999999998876666677899999999999999999
Q ss_pred eEEEeeCCc
Q psy9590 73 IFYVVDPGF 81 (350)
Q Consensus 73 i~~viD~g~ 81 (350)
+.+||..+.
T Consensus 438 ~~~Vi~~d~ 446 (494)
T 1wp9_A 438 VDLVVFYEP 446 (494)
T ss_dssp CCEEEESSC
T ss_pred CCEEEEeCC
Confidence 999996543
No 330
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.30 E-value=0.00065 Score=67.31 Aligned_cols=103 Identities=21% Similarity=0.117 Sum_probs=57.3
Q ss_pred EEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcc--hhhhhHHHHHHHHhcccc--------cchhhhhhhcccC--
Q psy9590 154 LIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRR--VAAMSVAKRVAEEFGCRL--------GQEVGYTIRFEDC-- 221 (350)
Q Consensus 154 ~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~--i~~~~~~~~v~~~~~~~~--------~~~v~~~~~~~~~-- 221 (350)
+.|.||+|+||||+++.+.+... .+.+.+....- ...-....++...+.... -+.+.........
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~ 143 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 143 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCc
Confidence 89999999999999999998864 34555532211 111111233333332211 1111111000000
Q ss_pred --CC------ccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCccc
Q psy9590 222 --TS------SETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERT 261 (350)
Q Consensus 222 --~~------~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher~ 261 (350)
.. .+..+..|++|++++..++.+..++|++ +||+--|.
T Consensus 144 ~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~--LD~aLlr~ 189 (499)
T 2dhr_A 144 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALLRP 189 (499)
T ss_dssp TTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGG--SCTTTSST
T ss_pred CCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhh--cCcccccc
Confidence 00 0123457888888888888888888887 89886663
No 331
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.28 E-value=0.0026 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+++|.|++||||||+.+.+....+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999887654
No 332
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.25 E-value=0.002 Score=53.83 Aligned_cols=26 Identities=12% Similarity=0.354 Sum_probs=22.5
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
++..++|+|++|+||||+++.+.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998754
No 333
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.24 E-value=0.01 Score=55.84 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.9
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+..+.|.||.|+||||+++.+....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999888754
No 334
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.22 E-value=0.0018 Score=70.45 Aligned_cols=70 Identities=23% Similarity=0.238 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEe
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVV 77 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~vi 77 (350)
|.+..++++.+++.|.+.. +...+..+||+++.+++.+++..-..|..+|++||+++|+++.||++.+||
T Consensus 818 f~~~v~~~~~l~~~L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VI 887 (1151)
T 2eyq_A 818 LYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 887 (1151)
T ss_dssp ECCCSSCHHHHHHHHHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEE
T ss_pred EECCHHHHHHHHHHHHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEE
Confidence 4556666777777776542 345688999999999999887766678889999999999999999999998
No 335
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.19 E-value=0.0093 Score=60.08 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchh
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVA 192 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~ 192 (350)
..+.+.+..+..+.++.|.|++|+||||++..++..... .+..|.+.-|...+
T Consensus 192 ~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~ApT~~A 244 (574)
T 3e1s_A 192 EEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLCAPTGKA 244 (574)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEecCcHHH
Confidence 344455666667889999999999999999988876532 23455554454433
No 336
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.18 E-value=0.0092 Score=58.25 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCC-EEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhh
Q psy9590 141 KHELIKAVSDNQ-ILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAA 193 (350)
Q Consensus 141 ~~~i~~~i~~g~-v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~ 193 (350)
...++..+..++ .+.|.|+.|+||||++..+...........|.+.-|...++
T Consensus 34 v~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa 87 (459)
T 3upu_A 34 FNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAK 87 (459)
T ss_dssp HHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHH
Confidence 334455555556 99999999999999998887655222112455544544443
No 337
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.18 E-value=0.0089 Score=56.35 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.8
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
...-+.|.||+|+||||+++.+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999998765
No 338
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.14 E-value=0.0027 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++|+|++|+||||+++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 339
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.11 E-value=0.0079 Score=62.72 Aligned_cols=111 Identities=18% Similarity=0.282 Sum_probs=57.7
Q ss_pred HHHHhhcC--CEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEEcCCcchhhhhHHHHHHHHhcccccchhhhhhh----
Q psy9590 144 LIKAVSDN--QILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIR---- 217 (350)
Q Consensus 144 i~~~i~~g--~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~~~~~~i~~~~~~~~v~~~~~~~~~~~v~~~~~---- 217 (350)
|...+..+ .-+.+.|++|||||...-..+... ...++.+.+.-|.+.-+....+.+...+.. .+..+.....
T Consensus 380 I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~-l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~-~gi~v~~l~G~~~~ 457 (780)
T 1gm5_A 380 IRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN-YEAGFQTAFMVPTSILAIQHYRRTVESFSK-FNIHVALLIGATTP 457 (780)
T ss_dssp HHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH-HHHTSCEEEECSCHHHHHHHHHHHHHHHTC-SSCCEEECCSSSCH
T ss_pred HHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhhh-cCceEEEEeCCCCH
Confidence 44444433 367899999999998754333222 112445666678766665555555544321 1111111000
Q ss_pred ------cccCCCccccccccChhHHHHHHHHhhcCCCCcEEEEcCCCcc
Q psy9590 218 ------FEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260 (350)
Q Consensus 218 ------~~~~~~~~~~i~~lS~G~~qr~~ia~all~~~~viIlDEpher 260 (350)
+.........+...|.+..+. ...+.+.+++|+||.|.-
T Consensus 458 ~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 458 SEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchh
Confidence 000001112233445554432 345788999999999984
No 340
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.11 E-value=0.015 Score=55.27 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.5
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
...-+.|.||+|+|||++++.+....
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 35679999999999999999987764
No 341
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.10 E-value=0.0047 Score=58.31 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCE--EEEeCCCCCCHHHHHHHHHhhc
Q psy9590 140 LKHELIKAVSDNQI--LIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 140 ~~~~i~~~i~~g~v--~~liG~nGsGKSTll~~l~~~~ 175 (350)
+.+.+...+++|+. ++|+|++||||||+.+.+....
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34445566778988 9999999999999999888754
No 342
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.10 E-value=0.0032 Score=55.66 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=24.8
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
....+.+++|+|++||||||+.+.+....+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456788999999999999999999887553
No 343
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.10 E-value=0.012 Score=57.30 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.-.++++.-+.+|+++.|.|++|+||||++-+++...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3456666668899999999999999999998887754
No 344
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.10 E-value=0.003 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+++|.|++||||||+.+.+ ...
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 7899999999999999988 443
No 345
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.08 E-value=0.0045 Score=51.71 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=22.8
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+.++.|.|++||||||+.+.+....+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999887653
No 346
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.08 E-value=0.022 Score=50.93 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 141 KHELIKAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 141 ~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
++.+......+.-+.|.|++|+|||++++.+....
T Consensus 19 ~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 19 LEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp HHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 33344445566788999999999999999988765
No 347
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.07 E-value=0.0054 Score=62.90 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.+.....+.+.+.|.+. .+.+..+||.++..++..++..-..|.-+|++|||+++..+.+|+|.+||..+
T Consensus 445 f~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 445 TVLTVRMAEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred EECCHHHHHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeC
Confidence 445556666665555432 24567799999999999997665678889999999999999999999999887
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
..
T Consensus 516 ~d 517 (664)
T 1c4o_A 516 AD 517 (664)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 348
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.06 E-value=0.0037 Score=52.71 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.1
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
|.+++|.|++||||||+.+.+....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999887654
No 349
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.06 E-value=0.0033 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=20.8
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+.+|+|+|||||||++..+....
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 489999999999999999876543
No 350
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.05 E-value=0.0038 Score=52.91 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-.+++|+|++||||||+++.++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998864
No 351
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.04 E-value=0.0033 Score=53.21 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=23.6
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
..+.+++|.|++||||||+.+.+....+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999998876553
No 352
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.99 E-value=0.0039 Score=53.29 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.5
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..|.+++|.|+.||||||+.+.+....
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999887754
No 353
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.99 E-value=0.0033 Score=53.28 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.2
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~ 174 (350)
....+..++|+|++||||||+.+.+...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4456789999999999999999988776
No 354
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.93 E-value=0.017 Score=54.15 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=22.9
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+..+.|.||+|+||||+++.+.....
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999988764
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.93 E-value=0.0061 Score=51.61 Aligned_cols=29 Identities=34% Similarity=0.613 Sum_probs=25.0
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+.++.+++|.|+.||||||+.+.+....+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55788999999999999999998876553
No 356
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.90 E-value=0.0043 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
.++|+|++|+||||+++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 357
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.90 E-value=0.017 Score=53.42 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.0
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..-+.|.||+|+|||++++.+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999998775
No 358
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.90 E-value=0.0059 Score=62.54 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
|.++....+.+.+.|.+. .+.+..+||.++..++.+++..-..|..+|++|||+++..+.+|+|.+||..+
T Consensus 451 f~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 451 TTLTKKMSEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETT
T ss_pred EECCHHHHHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeC
Confidence 445566666666665432 24567799999999999997655668889999999999999999999999877
Q ss_pred ce
Q psy9590 81 FV 82 (350)
Q Consensus 81 ~~ 82 (350)
..
T Consensus 522 ~d 523 (661)
T 2d7d_A 522 AD 523 (661)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 359
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.87 E-value=0.0059 Score=51.84 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=25.7
Q ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 146 KAVSDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 146 ~~i~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
..+..+.+++|.|+.||||||+.+.+....+
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455678999999999999999998877653
No 360
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.86 E-value=0.0049 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++|+||+|+||||+++.++...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999988764
No 361
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.85 E-value=0.0052 Score=55.14 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+++|+|++||||||+.+.+....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999988765
No 362
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.84 E-value=0.0049 Score=51.38 Aligned_cols=22 Identities=41% Similarity=0.753 Sum_probs=19.8
Q ss_pred CEEEEeCCCCCCHHHHHHHHHh
Q psy9590 152 QILIVIGETGSGKTTQITQYLA 173 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~ 173 (350)
.+++|.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3789999999999999998876
No 363
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.84 E-value=0.037 Score=51.33 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.6
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+..-+.|.||+|+|||++++.+....
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34678999999999999999998875
No 364
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.82 E-value=0.0088 Score=51.59 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCC---EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 141 KHELIKAVSDNQ---ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 141 ~~~i~~~i~~g~---v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+.+...+..+. .+.|.|++|+||||+++.+....
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444555555 89999999999999999888765
No 365
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.82 E-value=0.0056 Score=60.31 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc--CC-CCCCeEEEEeCCCCCHHHHHcccccCCC-CCeeEEEEeecccceeeecCeEEE
Q psy9590 1 MVKGQEEIDTACEILYERMKSL--GP-DVPELIILPVYSALPSEMQTRIFEAAPP-GSRKVVIATNIAETSLTIDGIFYV 76 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~--~~-~~~~~~~~pl~~~l~~~~q~~~~~~~~~-~~rkvilatniaets~ti~~i~~v 76 (350)
|.+..+..+.+.+.|.+..... .. ........++||+|+.+++.++++.-.. |..+|++||++|+..|.+|++.+|
T Consensus 395 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~V 474 (555)
T 3tbk_A 395 FVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLV 474 (555)
T ss_dssp ECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEE
T ss_pred EeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEE
Confidence 5556666666666665421100 00 0011234456789999999999987777 888999999999999999999999
Q ss_pred eeCC
Q psy9590 77 VDPG 80 (350)
Q Consensus 77 iD~g 80 (350)
|..+
T Consensus 475 I~~d 478 (555)
T 3tbk_A 475 ILYE 478 (555)
T ss_dssp EEES
T ss_pred EEeC
Confidence 9744
No 366
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.81 E-value=0.0052 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+++|.|++||||||+.+.+....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999887653
No 367
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.81 E-value=0.0064 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=22.6
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+..++|+|++||||||+.+.+....+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999998877654
No 368
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.79 E-value=0.0053 Score=53.31 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.2
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHh
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLA 173 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~ 173 (350)
.+-+++|.|++||||||+.+.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 369
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.79 E-value=0.004 Score=52.38 Aligned_cols=22 Identities=45% Similarity=0.764 Sum_probs=20.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
.++|+|++|+||||+++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 370
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.78 E-value=0.034 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.2
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..+.|.||+|+||||+++.+....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468999999999999999987765
No 371
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.68 E-value=0.0059 Score=51.27 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.1
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..+.+++|.|++||||||+.+.+....
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 372
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.66 E-value=0.007 Score=53.20 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=26.1
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAGF 177 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~~ 177 (350)
.+.+..++.|+||+||||+|+.+.+...+++
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4556779999999999999999998877654
No 373
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.63 E-value=0.013 Score=52.16 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=25.6
Q ss_pred HHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 144 i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.......+-+++|.|+.||||||+.+.+....
T Consensus 22 ~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 22 YACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33344567789999999999999999887655
No 374
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.62 E-value=0.02 Score=53.99 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..-+.|.||+|+||||+++.+....
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3458899999999999999998876
No 375
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.60 E-value=0.0069 Score=51.89 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.4
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+|.+++|.|+.||||||+.+.+....+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 466899999999999999999887654
No 376
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.59 E-value=0.0059 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.++|+|++||||||+.+.+....+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999887654
No 377
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.59 E-value=0.023 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
...+.|.||+|+||||+++.+....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3468899999999999999888765
No 378
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.58 E-value=0.006 Score=55.85 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.6
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+.+++|.|++||||||+.+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999987654
No 379
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.58 E-value=0.0087 Score=49.58 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=22.5
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcCC
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAGF 177 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~~ 177 (350)
-++++|.|..||||||+.+.+....+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999988776543
No 380
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.57 E-value=0.0051 Score=55.06 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.2
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
...+.++.|+|++||||||+.+.+....
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4456789999999999999999988765
No 381
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.55 E-value=0.0072 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.7
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+.+++|.|++||||||+.+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999887654
No 382
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.53 E-value=0.0053 Score=56.60 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.7
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~ 174 (350)
+..++|+|++|+|||||++.+++.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 347999999999999999999985
No 383
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.53 E-value=0.0082 Score=52.54 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=22.7
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
..+.+++|.|+.||||||+.+.+....+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999998886553
No 384
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.53 E-value=0.0029 Score=54.53 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+++|.|++||||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988765
No 385
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.50 E-value=0.025 Score=52.05 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 140 LKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 140 ~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+.+.+......+.-+.|.|++|+|||++.+.+....
T Consensus 14 ~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 14 LLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp HHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 334444444567788999999999999999888754
No 386
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.49 E-value=0.0074 Score=51.89 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=23.5
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++.+++|.|+.||||||+.+.+....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999887653
No 387
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.48 E-value=0.02 Score=57.97 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=33.8
Q ss_pred HHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCC---CCCcEEEEcCCcchhhhhH
Q psy9590 145 IKAVSDNQILIVIGETGSGKTTQITQYLAEAGF---TARGKIGCTQPRRVAAMSV 196 (350)
Q Consensus 145 ~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~---~~~G~i~~~~~~~i~~~~~ 196 (350)
+..+-.+.++.+.|++|+||||++..++..... ..+..+.+.-|...++...
T Consensus 158 i~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L 212 (608)
T 1w36_D 158 AAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 (608)
T ss_dssp HHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHH
T ss_pred HHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHH
Confidence 334446889999999999999998877654321 1123566656655554433
No 388
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.47 E-value=0.0069 Score=52.02 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.2
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..|.+++|.|+.||||||+.+.+....
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999887643
No 389
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.46 E-value=0.0077 Score=50.42 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=18.6
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
++.+++|.|++||||||+.+.+....+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 466899999999999999998876553
No 390
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.46 E-value=0.0083 Score=57.19 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.3
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+..++|+|++||||||+++.++...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999888754
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.45 E-value=0.0081 Score=50.88 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+++|.|+.||||||+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999887765
No 392
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.44 E-value=0.0087 Score=50.47 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.5
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+++|+|++||||||++..++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 478999999999999999988765
No 393
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.36 E-value=0.008 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+++|.|+.||||||+.+.+....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999887755
No 394
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.35 E-value=0.011 Score=51.29 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.0
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.+-.++|.|+.||||||+.+.+....+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999998877653
No 395
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.33 E-value=0.0084 Score=52.86 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.++|+|++|+||||+++.+++...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999999998653
No 396
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.32 E-value=0.021 Score=47.33 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=25.3
Q ss_pred HHHHHHhh--cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 142 HELIKAVS--DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 142 ~~i~~~i~--~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+.+...+. .+..+.|.|+.|+||||+++.+....
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 33444443 34678999999999999999887754
No 397
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.29 E-value=0.019 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.9
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..+.|.|++|+||||++..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999888766
No 398
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.29 E-value=0.013 Score=50.11 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.4
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+-+++|.|+.||||||+.+.+....+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999998877654
No 399
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.28 E-value=0.011 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=20.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.++|.|+.||||||+.+.+....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999998876653
No 400
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.28 E-value=0.012 Score=52.30 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.6
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
..-+++|.|++||||||+.+.+....+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999887653
No 401
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.25 E-value=0.009 Score=57.06 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=30.0
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+++..+.+||.++|+|++|+||||++.++....
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 678889999999999999999999999888764
No 402
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.24 E-value=0.017 Score=56.11 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++|+|++|+||||+++.+++..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999864
No 403
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.20 E-value=0.013 Score=50.62 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.++|.|+.||||||+.+.+....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999998876653
No 404
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.18 E-value=0.013 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+++|.|++||||||+.+.+....+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999887654
No 405
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.18 E-value=0.014 Score=53.30 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.1
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..+.|.||+|+||||+++.+....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 579999999999999999998876
No 406
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.17 E-value=0.0099 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.1
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~ 174 (350)
..+++|+|++||||||+.+.+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999988765
No 407
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.17 E-value=0.011 Score=51.50 Aligned_cols=26 Identities=42% Similarity=0.741 Sum_probs=22.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcCCC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAGFT 178 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~~~ 178 (350)
+++|+||+||||+|+.+.+...++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 57899999999999999998877543
No 408
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.17 E-value=0.025 Score=45.83 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 139 ~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+++.+......+.-+.|.||+|+|||++.+.+....
T Consensus 12 ~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 12 QYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3444455555677789999999999999999887654
No 409
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.17 E-value=0.014 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.5
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..+++|.|+.||||||+.+.+....
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3479999999999999999887655
No 410
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.11 E-value=0.011 Score=51.48 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=22.6
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.+..++|.|++||||||+.+.+....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999998877653
No 411
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.10 E-value=0.013 Score=49.18 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=21.9
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhcCC
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEAGF 177 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~~~ 177 (350)
.+++|+|+.||||||+.+.+....+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999988776543
No 412
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.07 E-value=0.026 Score=48.90 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=23.3
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+..+.|.||+|+||||+++.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999888765
No 413
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.06 E-value=0.013 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.8
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.-+.|.||+|+||||+++.+.+..+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3488999999999999999988763
No 414
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.06 E-value=0.013 Score=49.43 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+++|.|+.||||||+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999887654
No 415
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.04 E-value=0.013 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.9
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~ 174 (350)
.+.+++|.|++||||||+.+.+...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988765
No 416
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.03 E-value=0.0099 Score=53.64 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++|+|++||||||+++.+++..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 417
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.013 Score=49.28 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.4
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-.++++|++|+||||+++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998864
No 418
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.02 E-value=0.013 Score=47.66 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 419
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.02 E-value=0.014 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++++|+.|+||||+++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 420
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.02 E-value=0.013 Score=49.28 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.2
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+++|.|+.||||||+.+.+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999887655
No 421
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.02 E-value=0.016 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=20.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.++|.|+.||||||+.+.+....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999998877553
No 422
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.029 Score=53.81 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=23.7
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+....=+.|.||+|||||++.+.+.+..+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 33344588999999999999999998864
No 423
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.98 E-value=0.022 Score=57.11 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=20.7
Q ss_pred EEEEecccccccccCCEEEEEeCC
Q psy9590 300 VVIATNIAETSLTIDGIFYVVDPG 323 (350)
Q Consensus 300 vi~sT~iae~s~ti~d~~~vid~G 323 (350)
|++||..+++.+.++++..||...
T Consensus 502 ilvtt~~l~~GiDip~v~~Vi~~~ 525 (590)
T 3h1t_A 502 ILTTSQLLTTGVDAPTCKNVVLAR 525 (590)
T ss_dssp EEEESSTTTTTCCCTTEEEEEEES
T ss_pred EEEECChhhcCccchheeEEEEEe
Confidence 888999999999999999888633
No 424
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.97 E-value=0.03 Score=54.54 Aligned_cols=47 Identities=6% Similarity=0.090 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhcCCCCCcEEEE
Q psy9590 138 YKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGC 185 (350)
Q Consensus 138 ~~~~~~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~~~~~~G~i~~ 185 (350)
+.-.+.++.-+.+|+++.|.|++|+||||++-+++...... +..+.+
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~ 230 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNL 230 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEE
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEE
Confidence 34456677678999999999999999999988877654322 334443
No 425
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.96 E-value=0.0067 Score=59.88 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=12.7
Q ss_pred EEEeCCCCCHHHHHcccccCCC-CCeeEEEEeecccceeeecCeEEEeeC
Q psy9590 31 ILPVYSALPSEMQTRIFEAAPP-GSRKVVIATNIAETSLTIDGIFYVVDP 79 (350)
Q Consensus 31 ~~pl~~~l~~~~q~~~~~~~~~-~~rkvilatniaets~ti~~i~~viD~ 79 (350)
...+||+++.+++.++++.-.. |..+|++||++|+..|.+|++.+||..
T Consensus 429 ~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 429 RRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp -------------------------CCEEEEEC-----------CEEEEE
T ss_pred CcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 3456888999999999987777 888999999999999999999999963
No 426
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.94 E-value=0.015 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988643
No 427
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.94 E-value=0.013 Score=48.44 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.3
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.+++|.|+.||||||+.+.+....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999998877553
No 428
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.92 E-value=0.013 Score=47.39 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++++|+.|+||||+++.+++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 429
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.91 E-value=0.015 Score=47.40 Aligned_cols=23 Identities=22% Similarity=0.619 Sum_probs=20.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 430
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.90 E-value=0.015 Score=47.16 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 431
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.87 E-value=0.015 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 432
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.015 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
-++++|+.|+||||+++.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 433
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.85 E-value=0.016 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.775 Sum_probs=20.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++++|+.|+||||+++.+++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999988754
No 434
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.85 E-value=0.016 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 435
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.81 E-value=0.016 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
-++++|+.|+||||+++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 436
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.81 E-value=0.03 Score=47.57 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=24.6
Q ss_pred HHHHHHhhcCC--EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 142 HELIKAVSDNQ--ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 142 ~~i~~~i~~g~--v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+.+...+..+. .+.|.||.|+||||+++.+....
T Consensus 27 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 27 QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp HHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33444444442 48999999999999999887653
No 437
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.78 E-value=0.015 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999988643
No 438
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.78 E-value=0.017 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.703 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 439
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.76 E-value=0.0026 Score=66.37 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=46.3
Q ss_pred CCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEEeecccceeeecCeEEEeeCC
Q psy9590 27 PELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPG 80 (350)
Q Consensus 27 ~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvilatniaets~ti~~i~~viD~g 80 (350)
+.+.+..+||+|+.+++.++++.-..|..+|++||+++|..+.+|++.+||..+
T Consensus 612 ~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d 665 (780)
T 1gm5_A 612 PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIEN 665 (780)
T ss_dssp ---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCS
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeC
Confidence 356788999999999999888777788899999999999999999999999533
No 440
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.75 E-value=0.017 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++|.|++||||||+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999887655
No 441
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.73 E-value=0.015 Score=51.43 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=20.8
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+..|.++++.|+.||||||+++.+....
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999877654
No 442
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.71 E-value=0.0045 Score=67.06 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE-EeCCCCCHHHHHcccccCCCCCeeEEEE----eecccceeeecC-eE
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIIL-PVYSALPSEMQTRIFEAAPPGSRKVVIA----TNIAETSLTIDG-IF 74 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~-pl~~~l~~~~q~~~~~~~~~~~rkvila----tniaets~ti~~-i~ 74 (350)
|+++.++++.+.+.|.+. .+.+. ++||. +++ ++.-..|..+|++| |++++..|.||+ |+
T Consensus 315 F~~s~~~a~~l~~~L~~~---------g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~ 379 (1104)
T 4ddu_A 315 FAQTEEEGKELYEYLKRF---------KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIK 379 (1104)
T ss_dssp EESSSHHHHHHHHHHHHT---------TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCC
T ss_pred EECcHHHHHHHHHHHHhC---------CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCC
Confidence 677778887777777542 24465 89982 334 55555688999999 999999999999 99
Q ss_pred EEeeCCceeee-----eeecccccccc
Q psy9590 75 YVVDPGFVKQK-----VYNSKTGMDSL 96 (350)
Q Consensus 75 ~viD~g~~k~~-----~~~~~~~~~~l 96 (350)
+||+.|+.+.+ .++|..++..|
T Consensus 380 ~VI~~d~P~~~~Sle~~~~~~~~~~~l 406 (1104)
T 4ddu_A 380 YVIFWGTPSMRFSLELDKAPRFVLARV 406 (1104)
T ss_dssp EEEEESCCEEEEECSSSSCCHHHHHHH
T ss_pred EEEEECCCCCCCCcccccCHHHHHHHH
Confidence 99999999833 35555555554
No 443
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.038 Score=53.65 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.1
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+..-.=+.|.||+|||||++.+.+.+..+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34445688999999999999999998874
No 444
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.70 E-value=0.016 Score=47.31 Aligned_cols=23 Identities=22% Similarity=0.702 Sum_probs=20.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 445
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.69 E-value=0.015 Score=55.16 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=19.9
Q ss_pred CEEEEeCCCCCCHHHHHHHHHh
Q psy9590 152 QILIVIGETGSGKTTQITQYLA 173 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~ 173 (350)
.+.+|+|+|||||||++-.+..
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998764
No 446
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.68 E-value=0.014 Score=55.27 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+++|+|++|+||||+++.+++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 447
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.68 E-value=0.023 Score=52.61 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=27.6
Q ss_pred HHHHHHHhhcC--CEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 141 KHELIKAVSDN--QILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 141 ~~~i~~~i~~g--~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+.+...+..| ..+.|.||+|+||||+++.+....
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44556666666 448999999999999999988764
No 448
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.65 E-value=0.016 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
-++++|+.|+||||+++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999998753
No 449
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.65 E-value=0.026 Score=52.80 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=22.3
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+.+++|+||+||||||+...+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999998887654
No 450
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.63 E-value=0.018 Score=48.60 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
.++++|++|+||||+++.+.+.
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999874
No 451
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.63 E-value=0.019 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.622 Sum_probs=19.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
-++++|+.|+||||+++.+++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 452
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.62 E-value=0.006 Score=60.56 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.0
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~ 174 (350)
.+.+| +.+|+|+|||||||++..+...
T Consensus 57 ~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp ECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34556 9999999999999999998665
No 453
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.61 E-value=0.031 Score=46.23 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.7
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+..+.|.|++|+||||+++.+....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999887754
No 454
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.60 E-value=0.017 Score=47.59 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
-++++|+.|+||||+++.+++.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 455
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.58 E-value=0.023 Score=46.78 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=21.9
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+.-.++++|+.|+||||+++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999998743
No 456
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.57 E-value=0.015 Score=48.68 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++|+|+.|+||||+++.+++..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999998754
No 457
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.56 E-value=0.023 Score=49.34 Aligned_cols=26 Identities=46% Similarity=0.557 Sum_probs=22.3
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
+-.++|.|+.||||||+.+.+....+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55789999999999999998877653
No 458
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.55 E-value=0.02 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.++|.|+.||||||+.+.+....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999998877553
No 459
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.54 E-value=0.027 Score=59.04 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.5
Q ss_pred HhhcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 147 AVSDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 147 ~i~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.+..++.++|.||+||||||+++.+.+..+
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 357788999999999999999999998763
No 460
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.53 E-value=0.015 Score=48.81 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=20.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
.++|+|+.|+||||+++.+++.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 461
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=94.52 E-value=0.01 Score=64.09 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeCCCCCHHHHHcccccCCCCCeeEEEE----eecccceeeecC-eEE
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIA----TNIAETSLTIDG-IFY 75 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~pl~~~l~~~~q~~~~~~~~~~~rkvila----tniaets~ti~~-i~~ 75 (350)
|.++.++++.+++.|.+ . +.+.++||++....+ -|. .|..+|++| ||+|+.+|.+|+ |++
T Consensus 281 F~~t~~~a~~l~~~L~~---------~-~~v~~lhg~~~~~l~--~F~---~G~~~VLVaTas~Tdv~~rGIDip~VI~~ 345 (1054)
T 1gku_B 281 YARTGEEAEEIYESLKN---------K-FRIGIVTATKKGDYE--KFV---EGEIDHLIGTAHYYGTLVRGLDLPERIRF 345 (1054)
T ss_dssp EESSHHHHHHHHHTTTT---------S-SCEEECTTSSSHHHH--HHH---HTSCSEEEEECC------CCSCCTTTCCE
T ss_pred EEcCHHHHHHHHHHHhh---------c-cCeeEEeccHHHHHH--HHH---cCCCcEEEEecCCCCeeEeccccCCcccE
Confidence 66777777766655531 1 678999999953332 243 577899999 999999999999 499
Q ss_pred EeeCCceeee
Q psy9590 76 VVDPGFVKQK 85 (350)
Q Consensus 76 viD~g~~k~~ 85 (350)
||+.|+.+..
T Consensus 346 VI~~~~P~~~ 355 (1054)
T 1gku_B 346 AVFVGCPSFR 355 (1054)
T ss_dssp EEEESCCEEE
T ss_pred EEEeCCCccc
Confidence 9999999533
No 462
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.52 E-value=0.012 Score=61.36 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=17.6
Q ss_pred EEEeCCCCCHHHHHcccccCCC-CCeeEEEEeecccceeeecCeEEEeeC
Q psy9590 31 ILPVYSALPSEMQTRIFEAAPP-GSRKVVIATNIAETSLTIDGIFYVVDP 79 (350)
Q Consensus 31 ~~pl~~~l~~~~q~~~~~~~~~-~~rkvilatniaets~ti~~i~~viD~ 79 (350)
...+||+++.++|..++..-.. |..+|++||++|+..|.+|++.+||..
T Consensus 670 ~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 670 RRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (797)
T ss_dssp ------------------------CCSEEEEECC-------CCCSEEEEE
T ss_pred CcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEe
Confidence 4467899999999999877776 888999999999999999999999963
No 463
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.52 E-value=0.021 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=20.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++|+|+.|+||||+++.+++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 464
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.49 E-value=0.014 Score=47.62 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=19.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
-++++|+.|+||||+++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988764
No 465
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.48 E-value=0.022 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+++..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 466
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.48 E-value=0.022 Score=46.54 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.7
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-.++++|+.|+||||+++.+.+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999997643
No 467
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.48 E-value=0.016 Score=47.77 Aligned_cols=22 Identities=27% Similarity=0.711 Sum_probs=19.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
-++++|+.|+||||+++.+++.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 468
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.46 E-value=0.022 Score=47.78 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++|+|+.|+||||+++.+++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999999863
No 469
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.46 E-value=0.022 Score=49.73 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.9
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.|.++++.|+.||||||+++.+....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887654
No 470
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.45 E-value=0.022 Score=47.48 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++|+|+.|+||||+++.+++..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998743
No 471
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.45 E-value=0.022 Score=46.80 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=20.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998754
No 472
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.43 E-value=0.023 Score=46.14 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHhhc
Q psy9590 154 LIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 154 ~~liG~nGsGKSTll~~l~~~~ 175 (350)
++++|+.|+||||+++.+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999998753
No 473
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.42 E-value=0.037 Score=50.87 Aligned_cols=33 Identities=18% Similarity=0.439 Sum_probs=26.5
Q ss_pred HHHHHhhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 143 ~i~~~i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+...+..|.++.|.|+.|+||||+++.+....
T Consensus 23 ~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 23 KLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 344445557899999999999999999988764
No 474
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=94.41 E-value=0.019 Score=61.17 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=18.2
Q ss_pred EEEeCCCCCHHHHHcccccCCC-CCeeEEEEeecccceeeecCeEEEee
Q psy9590 31 ILPVYSALPSEMQTRIFEAAPP-GSRKVVIATNIAETSLTIDGIFYVVD 78 (350)
Q Consensus 31 ~~pl~~~l~~~~q~~~~~~~~~-~~rkvilatniaets~ti~~i~~viD 78 (350)
...+||+++.++|..++..-.. |..+|++||++|+..|.+|++.+||.
T Consensus 670 ~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 670 RRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp ------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 4467999999999999877776 88899999999999999999999996
No 475
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.39 E-value=0.023 Score=46.75 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
-++++|+.|+||||+++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 476
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.37 E-value=0.02 Score=47.01 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=19.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
-++|+|+.|+||||+++.+++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 477
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.042 Score=53.06 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.6
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
....=+.|.||+|+|||++.+.+.+..+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 3445688999999999999999998864
No 478
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.36 E-value=0.024 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.6
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
-++|+|++|+||||+++.+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999888764
No 479
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.35 E-value=0.024 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++|+|+.|+||||+++.+++..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48899999999999999998743
No 480
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.34 E-value=0.05 Score=47.52 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=21.5
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.+|.+..+.|+-||||||.+-..+...
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 458899999999999999876555443
No 481
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.34 E-value=0.056 Score=50.21 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.9
Q ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 148 VSDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 148 i~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+..| ++.|.||+|+||||+.-+++...
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 6778 89999999999999977776544
No 482
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.34 E-value=0.024 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.614 Sum_probs=20.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+++..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 483
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.34 E-value=0.024 Score=47.47 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++++|..|+||||+++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998753
No 484
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.33 E-value=0.024 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.726 Sum_probs=20.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+++..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 485
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.33 E-value=0.022 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
.++|+|++|+||||+++.+.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
No 486
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.31 E-value=0.016 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
.++++|++|+||||+++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 487
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.30 E-value=0.015 Score=55.38 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE-EeCCCCCHHHHHcccccCCCCCeeEEEE----eecccceeeecC-eE
Q psy9590 1 MVKGQEEIDTACEILYERMKSLGPDVPELIIL-PVYSALPSEMQTRIFEAAPPGSRKVVIA----TNIAETSLTIDG-IF 74 (350)
Q Consensus 1 fl~g~~ei~~~~~~l~~~~~~~~~~~~~~~~~-pl~~~l~~~~q~~~~~~~~~~~rkvila----tniaets~ti~~-i~ 74 (350)
|.+..++.+.+.+.|.+. .+.+. .+||. +++ ++.-..|..+|++| |++++..+.+|+ |.
T Consensus 258 F~~~~~~~~~l~~~L~~~---------~~~~~~~~h~~-----~r~-~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~ 322 (414)
T 3oiy_A 258 FAQTEEEGKELYEYLKRF---------KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIK 322 (414)
T ss_dssp EESSHHHHHHHHHHHHHT---------TCCEEESSSCH-----HHH-HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCC
T ss_pred EECCHHHHHHHHHHHHHc---------CCceehhhcCc-----chH-HHHHhCCCCeEEEEecCcCchhhccCccccccC
Confidence 667777887777777542 24455 78884 223 44445678899999 999999999999 99
Q ss_pred EEeeCCcee
Q psy9590 75 YVVDPGFVK 83 (350)
Q Consensus 75 ~viD~g~~k 83 (350)
+||+.++.+
T Consensus 323 ~VI~~~~p~ 331 (414)
T 3oiy_A 323 YVIFWGTPS 331 (414)
T ss_dssp EEEEESCCT
T ss_pred EEEEECCCC
Confidence 999877653
No 488
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.30 E-value=0.022 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++|+|.+|+||||+++.+++..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999865
No 489
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.28 E-value=0.018 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++++|+.|+||||+++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998753
No 490
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.28 E-value=0.025 Score=49.40 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.8
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+|.++++-|+.||||||+++.+....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999887654
No 491
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.26 E-value=0.044 Score=50.81 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.4
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 151 NQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 151 g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
+.+++|+||+||||||+...+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999998887654
No 492
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.26 E-value=0.02 Score=54.78 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHhhcCCEEEEeCCCCCCHHHHHHHHHhh
Q psy9590 145 IKAVSDNQILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 145 ~~~i~~g~v~~liG~nGsGKSTll~~l~~~ 174 (350)
+..+..+..++|+|++|+||||+++.+.+.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 334567788999999999999999999876
No 493
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.24 E-value=0.032 Score=49.00 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.9
Q ss_pred cCCEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 150 DNQILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 150 ~g~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
.+..++|.|+.||||||+.+.+...++
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999998887653
No 494
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.24 E-value=0.026 Score=48.40 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=22.7
Q ss_pred hcCCEEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 149 SDNQILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 149 ~~g~v~~liG~nGsGKSTll~~l~~~~ 175 (350)
..+-+++|+|..||||||+.+.+....
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345689999999999999999887654
No 495
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.23 E-value=0.026 Score=50.20 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.4
Q ss_pred CEEEEeCCCCCCHHHHHHHHHhhcC
Q psy9590 152 QILIVIGETGSGKTTQITQYLAEAG 176 (350)
Q Consensus 152 ~v~~liG~nGsGKSTll~~l~~~~~ 176 (350)
-+++|.|+.||||||+.+.+....+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3799999999999999998876544
No 496
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.22 E-value=0.026 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++|+|+.|+||||+++.+++..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 497
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.16 E-value=0.024 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=20.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
-++|+|+.|+||||+++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998753
No 498
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.15 E-value=0.02 Score=54.17 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHhhc
Q psy9590 154 LIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 154 ~~liG~nGsGKSTll~~l~~~~ 175 (350)
++|+|++|+||||+++.+++..
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 6899999999999999987753
No 499
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.14 E-value=0.028 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=19.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHhh
Q psy9590 153 ILIVIGETGSGKTTQITQYLAE 174 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~ 174 (350)
.++|+|+.|+||||+++.+++.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 500
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.13 E-value=0.028 Score=47.65 Aligned_cols=23 Identities=35% Similarity=0.783 Sum_probs=20.6
Q ss_pred EEEEeCCCCCCHHHHHHHHHhhc
Q psy9590 153 ILIVIGETGSGKTTQITQYLAEA 175 (350)
Q Consensus 153 v~~liG~nGsGKSTll~~l~~~~ 175 (350)
.++|+|+.|+||||+++.+++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998754
Done!