RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9590
(350 letters)
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 287 bits (737), Expect = 4e-91
Identities = 85/170 (50%), Positives = 117/170 (68%), Gaps = 5/170 (2%)
Query: 104 DLPEWKKHVIGGKKSSFGK---KTNLTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGET 160
E +K G G+ + I++ R+ LP++ + E +K +NQI++ +GET
Sbjct: 59 SAEEAQKLEDGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGET 118
Query: 161 GSGKTTQITQYLA--EAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRF 218
GSGKTTQI Q++ E ++ CTQPRRVAAMSVA+RVAEE +LG+EVGY+IRF
Sbjct: 119 GSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRF 178
Query: 219 EDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268
E+ TS++T++KYMTDGMLLRE + D DL+ YS I+LDEAHERT+ TD+L
Sbjct: 179 ENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILM 228
Score = 194 bits (495), Expect = 3e-56
Identities = 54/107 (50%), Positives = 68/107 (63%), Gaps = 7/107 (6%)
Query: 4 GQEEIDTACEILYERMKSLGP--DVPELIILPVYSALPSEMQTRIFEAAPPG-----SRK 56
G++EI+ A + L L + P+Y +LP Q RIFE AP RK
Sbjct: 312 GEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371
Query: 57 VVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQ 103
VVI+TNIAETSLTIDGI YVVDPGF KQKVYN + ++SL+V+PIS+
Sbjct: 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISK 418
Score = 115 bits (289), Expect = 2e-28
Identities = 39/79 (49%), Positives = 49/79 (62%), Gaps = 17/79 (21%)
Query: 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327
F+P S + R +VVI+TNIAETSLTIDGI YVVDPGF KQ
Sbjct: 357 FEPAPESHNGRPGR-----------------KVVISTNIAETSLTIDGIVYVVDPGFSKQ 399
Query: 328 KVYNSKTGMDSLVVTPISQ 346
KVYN + ++SL+V+PIS+
Sbjct: 400 KVYNPRIRVESLLVSPISK 418
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 257 bits (660), Expect = 8e-86
Identities = 57/147 (38%), Positives = 91/147 (61%), Gaps = 7/147 (4%)
Query: 127 TIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFT----ARGK 182
I+++R+ LP+ K + E+++A+S N ++I+ G TG GKTTQ+ Q++ + A
Sbjct: 52 AILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECN 111
Query: 183 IGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDC-TSSETLIKYMTDGMLLRECL 241
I TQPRR++A+SVA+RVA E G G+ GY++RFE I + T G+LLR+
Sbjct: 112 IVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRK-- 169
Query: 242 VDLDLNNYSVIMLDEAHERTIHTDVLF 268
++ + S +++DE HER I+TD L
Sbjct: 170 LEAGIRGISHVIVDEIHERDINTDFLL 196
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 162 bits (411), Expect = 3e-46
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 11/139 (7%)
Query: 131 QRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRR 190
P Y++ ++ ++ I+ G+GKT +I + R + P R
Sbjct: 2 SAMGEPDYEVDEDIF---RKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTR 58
Query: 191 VAAMSVAKRVAEEFGCRLGQEVGY-TIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNY 249
V A + + + G + Y T + + ++ M L + NY
Sbjct: 59 VVAAEMEEALR-------GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNY 111
Query: 250 SVIMLDEAHERTIHTDVLF 268
++I++DEAH +
Sbjct: 112 NLIVMDEAHFTDPCSVAAR 130
Score = 103 bits (259), Expect = 6e-25
Identities = 11/102 (10%), Positives = 27/102 (26%), Gaps = 16/102 (15%)
Query: 4 GQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNI 63
+ + L + K ++ + + V+ T+I
Sbjct: 197 SIKAGNDIANCLRKSGKR---------VIQLSRKT----FDTEYPKTKLTDWDFVVTTDI 243
Query: 64 AETSLTIDGIFYVVDPGFVKQKV--YNSKTGMDSLVVTPISQ 103
+E V+DP + V + + P++
Sbjct: 244 SEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTP 284
Score = 75.7 bits (186), Expect = 2e-15
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 277 KKNQRLEPLYNKYEEPNAWRIS----RVVIATNIAETSLTIDGIFYVVDPGFVKQKV--Y 330
K +R+ L K + + V+ T+I+E V+DP + V
Sbjct: 210 KSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILT 268
Query: 331 NSKTGMDSLVVTPISQ 346
+ + P++
Sbjct: 269 DGPERVILAGPIPVTP 284
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 158 bits (400), Expect = 8e-45
Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 6/118 (5%)
Query: 151 NQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQ 210
++ ++ G+GKT ++ L R + P RV A + + + E
Sbjct: 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRGEPI----- 56
Query: 211 EVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268
T + + ++ +M + L + + NY++ ++DEAH +
Sbjct: 57 -RYMTPAVQSERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAAR 113
Score = 96.4 bits (240), Expect = 2e-22
Identities = 13/100 (13%), Positives = 24/100 (24%), Gaps = 15/100 (15%)
Query: 4 GQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNI 63
++ L + K +L + + VI T+I
Sbjct: 180 SIKQGAEIGTCLQKAGKK---------VLYLNRKTFESEYPK----CKSEKWDFVITTDI 226
Query: 64 AETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQ 103
+E V+DP K + I+
Sbjct: 227 SEMGANFK-ADRVIDPRK-TIKPILLDGRVSMQGPIAITP 264
Score = 69.5 bits (170), Expect = 3e-13
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 299 RVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQ 346
VI T+I+E V+DP K + I+
Sbjct: 219 DFVITTDISEMGANFK-ADRVIDPRK-TIKPILLDGRVSMQGPIAITP 264
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 156 bits (397), Expect = 4e-44
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 8/131 (6%)
Query: 139 KLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAK 198
++ + Q+ ++ GSGKT +I + + R + P RV VA
Sbjct: 9 QMGRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRV----VAA 64
Query: 199 RVAEEFGCRLGQEVGYTIRF-EDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEA 257
+AE G V Y + ++ M L + + NY++ ++DEA
Sbjct: 65 EMAEALR---GLPVRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEA 121
Query: 258 HERTIHTDVLF 268
H +
Sbjct: 122 HFTDPASIAAR 132
Score = 105 bits (264), Expect = 1e-25
Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 16/102 (15%)
Query: 4 GQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNI 63
+ + L K ++ + + G VI T+I
Sbjct: 199 SVKMGNEIAMCLQRAGKK---------VIQLNRKSYDTEYPK----CKNGDWDFVITTDI 245
Query: 64 AETSLTIDGIFYVVDPGF-VKQKVYN-SKTGMDSLVVTPISQ 103
+E V+D VK + + + +PI+
Sbjct: 246 SEMGANFG-ASRVIDCRKSVKPTILEEGEGRVILGNPSPITS 286
Score = 74.1 bits (182), Expect = 9e-15
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 277 KKNQRLEPLYNKYEEPNAWRIS----RVVIATNIAETSLTIDGIFYVVDPGF-VKQKVYN 331
+ +++ L K + + VI T+I+E V+D VK +
Sbjct: 212 RAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILE 270
Query: 332 -SKTGMDSLVVTPISQ 346
+ + +PI+
Sbjct: 271 EGEGRVILGNPSPITS 286
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 155 bits (394), Expect = 1e-42
Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 11/157 (7%)
Query: 112 VIGGKKSSFGKKTNLTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQY 171
V + + +E P++ Q+ + TGSGK+T++
Sbjct: 193 VCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAA 252
Query: 172 LAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIKYM 231
A G K+ P A + +++ G + +R + Y
Sbjct: 253 YAAQG----YKVLVLNPSVAATLGFGAYMSKAHGI--DPNIRTGVRTITTG---APVTYS 303
Query: 232 TDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268
T G L + Y +I+ DE H T +
Sbjct: 304 TYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGI 338
Score = 96.6 bits (240), Expect = 4e-22
Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 20/105 (19%)
Query: 2 VKGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIAT 61
+++ D L L I V ++ P VV+AT
Sbjct: 403 CHSKKKCDELAAKL-----------SGLGINAVAYYRGLDVS-----VIPTIGDVVVVAT 446
Query: 62 NIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVT---PISQ 103
+ T T D V+D + + + T P
Sbjct: 447 DALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDA 490
Score = 75.4 bits (185), Expect = 4e-15
Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 21/91 (23%)
Query: 259 ERTIHTDVLFDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATNIAETSLTIDGIFY 318
I+ + +S VV+AT+ T T D
Sbjct: 418 GLGINAVAYYRGLDVSVIPTIGD-----------------VVVVATDALMTGYTGD-FDS 459
Query: 319 VVDPGFVKQKVYNSKTGMDSLVVT---PISQ 346
V+D + + + T P
Sbjct: 460 VIDCNTCVTQTVDFSLDPTFTIETTTVPQDA 490
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 145 bits (368), Expect = 5e-39
Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 12/162 (7%)
Query: 111 HVIG--GKKSSFGKKTNLTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQI 168
+IG G G ++ + Q + + + + + Q+ ++ G+GKT +I
Sbjct: 199 EIIGLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRI 258
Query: 169 TQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTI--RFEDCTSSET 226
+ + R + P RV A +A+ L + + S
Sbjct: 259 LPQIIKDAIQKRLRTAVLAPTRVVAAEMAE--------ALRGLPVRYLTPAVQREHSGNE 310
Query: 227 LIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268
++ M L + L + NY++ ++DEAH +
Sbjct: 311 IVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAAR 352
Score = 101 bits (252), Expect = 1e-23
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 16/102 (15%)
Query: 4 GQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNI 63
+ + + L K ++ + + G VI T+I
Sbjct: 419 SVKMSNEIAQCLQRAGKR---------VIQLNRKS----YDTEYPKCKNGDWDFVITTDI 465
Query: 64 AETSLTIDGIFYVVDPGF-VKQKVYN-SKTGMDSLVVTPISQ 103
+E V+D VK + + + + V + I+
Sbjct: 466 SEMGANFGAS-RVIDCRKSVKPTILDEGEGRVILSVPSAITS 506
Score = 70.7 bits (173), Expect = 1e-13
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 299 RVVIATNIAETSLTIDGIFYVVDPGF-VKQKVYN-SKTGMDSLVVTPISQ 346
VI T+I+E V+D VK + + + + V + I+
Sbjct: 458 DFVITTDISEMGANFGAS-RVIDCRKSVKPTILDEGEGRVILSVPSAITS 506
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 145 bits (366), Expect = 6e-39
Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 13/186 (6%)
Query: 88 NSKTGMDSLVVTPISQDLP--EWKKHVIG--GKKSSFGKKTNLTIVEQRQSLPIYKLKHE 143
+ G +L P + P K VIG G ++ + Q +
Sbjct: 120 TGEIGAVTLDFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAER-IGEPDYEV 178
Query: 144 LIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEE 203
++ I+ G+GKT +I + R + P RV A + + +
Sbjct: 179 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR-- 236
Query: 204 FGCRLGQEVGY-TIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTI 262
G + Y T + + ++ M L + NY++I++DEAH
Sbjct: 237 -----GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDP 291
Query: 263 HTDVLF 268
+
Sbjct: 292 CSVAAR 297
Score = 100 bits (251), Expect = 1e-23
Identities = 12/102 (11%), Positives = 27/102 (26%), Gaps = 16/102 (15%)
Query: 4 GQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNI 63
+ + L + G V + + + V+ T+I
Sbjct: 364 SIKAGNDIANCLRKS----GKRV-----IQLSRKT----FDTEYPKTKLTDWDFVVTTDI 410
Query: 64 AETSLTIDGIFYVVDPGFVKQKV--YNSKTGMDSLVVTPISQ 103
+E V+DP + V + + P++
Sbjct: 411 SEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTP 451
Score = 74.2 bits (182), Expect = 1e-14
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 299 RVVIATNIAETSLTIDGIFYVVDPGFVKQKV--YNSKTGMDSLVVTPISQ 346
V+ T+I+E V+DP + V + + P++
Sbjct: 403 DFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTP 451
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 136 bits (345), Expect = 8e-37
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 8/121 (6%)
Query: 149 SDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRL 208
++ G+GKT + + R + P RV + +
Sbjct: 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH------- 58
Query: 209 GQEVGYTIR-FEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVL 267
G +V + + F S +I M L L + N+ VI++DEAH +
Sbjct: 59 GLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAA 118
Query: 268 F 268
Sbjct: 119 R 119
Score = 97.6 bits (243), Expect = 8e-23
Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 15/101 (14%)
Query: 4 GQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNI 63
+ L + KS ++ + ++AT+I
Sbjct: 186 SIRAANVMAASLRKAGKS---------VVVLNRKTFEREY----PTIKQKKPDFILATDI 232
Query: 64 AETSLTIDGIFYVVDPGF-VKQKVYNSKTGMDSLVVTPISQ 103
AE + + V+D K + + + IS
Sbjct: 233 AEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISA 272
Score = 70.3 bits (172), Expect = 2e-13
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 299 RVVIATNIAETSLTIDGIFYVVDPGF-VKQKVYNSKTGMDSLVVTPISQ 346
++AT+IAE + + V+D K + + + IS
Sbjct: 225 DFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISA 272
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 3e-09
Identities = 59/406 (14%), Positives = 124/406 (30%), Gaps = 126/406 (31%)
Query: 9 DTACEILYERMKSL--GPDVPELIILPVYSALPSEMQT-RIFEAAPPGSRKVVIATNIAE 65
+ C+ + + KS+ ++ +I+ + T R+F ++V E
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMV--QKFVE 84
Query: 66 TSLTIDGIFYVVDPGFVK---QKVYNSKTGMDSLVVT---PISQDLPEWKKHVIGGKKSS 119
L I+ Y F+ + + M + + + D + K+
Sbjct: 85 EVLRIN---Y----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-------- 129
Query: 120 FGKKTNLTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTA 179
N++ ++ P KL+ L++ + + +++ G GSGKT
Sbjct: 130 -----NVSRLQ-----PYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 180 R--GKI-----G-CTQPRRVAAM--SVAKRVAEEFGCRLGQEVGYTIRFEDCTSSETLIK 229
+ KI C P V M + ++ + R +R L +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--IQAELRR 236
Query: 230 YMTDGMLLRECLVDLD-LNNYSVI--------ML---------------DEAHERTIHTD 265
+ CL+ L + N +L H H
Sbjct: 237 LLKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 266 VLFDPTK----LSKF--KKNQRL-------EPL---------------YNKYEEPNAWRI 297
+ P + L K+ + Q L P ++ ++ N ++
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 298 SRVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTP 343
+ ++ E+SL V++P ++ ++ D L V P
Sbjct: 356 TTII------ESSLN------VLEPAEYRK-MF------DRLSVFP 382
Score = 52.5 bits (125), Expect = 1e-07
Identities = 41/367 (11%), Positives = 107/367 (29%), Gaps = 80/367 (21%)
Query: 4 GQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQT--RIFEAAPPGSRKVVIAT 61
E + E ++ L I P +++ + R+++ +
Sbjct: 190 KNCNSP---ETVLEMLQKL-----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 62 NIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVT---PISQDL-PEWKKHV-IGGK 116
L + V + + K L+ T ++ L H+ +
Sbjct: 242 PYENCLLVLLN---VQNAKAWNAFNLSCKI----LLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 117 KSSFGKKTNLTIVEQRQSLPIYKLKHELIKAVSDNQILI-VIGETGSGKTTQITQYLAEA 175
+ +++ + L E ++ N + +I E+ +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWK--- 348
Query: 176 GFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCT--------SSETL 227
+ C + + S+ E+ ++ F+ + + L
Sbjct: 349 ------HVNCDKLTTIIESSLNVLEPAEY-----RK-----MFDRLSVFPPSAHIPTILL 392
Query: 228 ------IKYMTDGMLLREC----LVDLDLNNYSV----IMLDE----AHERTIHTDVL-- 267
+ +++ + LV+ ++ I L+ +E +H ++
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 268 FDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATNIAETSLTIDGIFYVVDPGFVKQ 327
++ K F + + P ++Y I + E +F +D F++Q
Sbjct: 453 YNIPK--TFDSDDLIPPYLDQY---FYSHIGHHLKNIEHPERMTLFRMVF--LDFRFLEQ 505
Query: 328 KVYNSKT 334
K+ + T
Sbjct: 506 KIRHDST 512
Score = 35.2 bits (80), Expect = 0.031
Identities = 30/203 (14%), Positives = 58/203 (28%), Gaps = 71/203 (34%)
Query: 13 EILYERMKSLGPDVPELII--LPVYSAL---PSEMQTRI----FEAAPPGS------RKV 57
+++ + +++ L YS + P E I E R +
Sbjct: 393 SLIWFDVI---KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 58 VIATNIAE-------TSLTIDGIFY----------------------VVDPGFVKQKVYN 88
V NI + +D FY +D F++QK+ +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 89 SKTGMDSLV-VTPISQDLPEWKKHVIGGKKSSFGKKTNLTIVEQRQSLPIYKLKHELIKA 147
T ++ + Q L +K ++ N E+ + + L K
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYIC----------DNDPKYERL----VNAILDFLPKI 555
Query: 148 VSDNQILIVIGETGSGKTTQITQ 170
+ LI K T + +
Sbjct: 556 ---EENLI------CSKYTDLLR 569
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 5e-06
Identities = 35/180 (19%), Positives = 58/180 (32%), Gaps = 77/180 (42%)
Query: 15 LYERMK--------------SLGPDVPELIILPVYSALPSE---M---------QTR--- 45
+E +K SLG E Y+AL S M R
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLG----E------YAALASLADVMSIESLVEVVFYRGMT 1792
Query: 46 IFEAAPPG----SRKVVIATNIAETSLTI--DGIFYVVDP-----GFVKQKV-YNSKTGM 93
+ A P S +IA N + + + + YVV+ G++ + V YN
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV---- 1848
Query: 94 DSLVVTPISQDLPEWKKHVIGGKKS---------SFGKKTNLTIVEQRQSLPIYKLKHEL 144
Q +V G +F K + I+E ++SL + +++ L
Sbjct: 1849 ------ENQQ-------YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 44.3 bits (104), Expect = 6e-05
Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 69/187 (36%)
Query: 1 M--VKG------QEEIDTACEILYERMK---SL--GPD--V----PE-LIILPVY----S 36
M + Q+ ++ L + SL G V P+ L L +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 37 ALPSEMQTRIFEAAPPGS-RKVVI------------------ATNIAETSLTIDGIFYVV 77
A Q+RI P S RK+ A+++ L + + +
Sbjct: 398 APSGLDQSRI-----PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF-- 450
Query: 78 DPGFVKQKVYNSKTGMD-SLVVTPISQDL-------P-EWKK-------HVI--G-GKKS 118
+ ++ VY++ G D ++ IS+ + P +W+ H++ G G S
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 119 SFGKKTN 125
G T+
Sbjct: 511 GLGVLTH 517
Score = 40.0 bits (93), Expect = 0.001
Identities = 45/238 (18%), Positives = 71/238 (29%), Gaps = 74/238 (31%)
Query: 98 VTPISQDLPEWKKHVIGGKKSSFGKKTNLTIVEQRQSLPIY------KLKHELIKAVSDN 151
+ I + P GG+K GK+ I E ++ I+ KLK E I +
Sbjct: 1661 ILDIVINNPVNLTIHFGGEK---GKR----IRENYSAM-IFETIVDGKLKTEKIFKEINE 1712
Query: 152 QILIVI--GETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAK-RVAEEFGCR- 207
E G TQ TQP + M A + G
Sbjct: 1713 HSTSYTFRSEKGLLSATQF-----------------TQP-ALTLMEKAAFEDLKSKGLIP 1754
Query: 208 ---------LGQEVGYT--------IRFEDCTSSETLIKYMTDGMLLRECLVDLD---LN 247
LG E Y + E ++ Y GM ++ V D +
Sbjct: 1755 ADATFAGHSLG-E--YAALASLADVMSIESLVE---VVFYR--GMTMQVA-VPRDELGRS 1805
Query: 248 NYSVIMLDEAH-ERTIHTDVLFDPTKLSKFKKNQRLEPL-YNKYEEPNAWRISRVVIA 303
NY +I ++ + + L + + +E + YN N + V A
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN---VEN----QQYVAA 1856
Score = 29.2 bits (65), Expect = 2.5
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 195 SVAKRVAEEFGCRLGQEVGYTIR--FEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVI 252
A+ V G++I + + T+ G +RE NYS +
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE--------NYSAM 1691
Query: 253 MLDEAHERTIHTDVLFD 269
+ + + + T+ +F
Sbjct: 1692 IFETIVDGKLKTEKIFK 1708
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 36.2 bits (84), Expect = 0.016
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 27/86 (31%)
Query: 133 QSLPIY----------KLKHEL---IKAVSD-----------NQILIVIGETGSGKTT-- 166
+ LPIY K +HE+ + AV++ +Q ++ GE+G+GKT
Sbjct: 104 KQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENT 163
Query: 167 -QITQYLAEAGFTARGKIGCTQPRRV 191
++ QYLA + +G+ P +
Sbjct: 164 KKVIQYLAHVASSPKGRKEPGVPGEL 189
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 34.6 bits (80), Expect = 0.047
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 27/68 (39%)
Query: 133 QSLPIY----------KLKHEL---IKAVSD-----------NQILIVIGETGSGKT--T 166
+ LPIY K K E+ + +V+D NQ ++ GE+G+GKT T
Sbjct: 127 RRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENT 186
Query: 167 -QITQYLA 173
++ YLA
Sbjct: 187 KKVIMYLA 194
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 34.4 bits (80), Expect = 0.049
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 27/79 (34%)
Query: 133 QSLPIY----------KLKHEL---IKAVSD-----------NQILIVIGETGSGKTT-- 166
++L IY + K+E+ + A+++ NQ +I+ GE+G+GKT
Sbjct: 52 KNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111
Query: 167 -QITQYLAEAGFTARGKIG 184
+I Q+L
Sbjct: 112 KKIMQFLTFVSSNQSPNGE 130
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 34.1 bits (79), Expect = 0.068
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 27/68 (39%)
Query: 133 QSLPIY----------KLKHEL---IKAVSD-----------NQILIVIGETGSGKTT-- 166
+ +PIY + ++E+ I A+SD NQ L++ GE+G+GKT
Sbjct: 130 KRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189
Query: 167 -QITQYLA 173
++ QYLA
Sbjct: 190 KKVIQYLA 197
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 34.2 bits (79), Expect = 0.068
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 27/68 (39%)
Query: 133 QSLPIY----------KLKHEL---IKAVSD-----------NQILIVIGETGSGKT--T 166
+ LP+Y K + E I ++SD NQ +++ GE+G+GKT T
Sbjct: 129 KWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNT 188
Query: 167 -QITQYLA 173
++ QY A
Sbjct: 189 KRVIQYFA 196
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 33.9 bits (78), Expect = 0.082
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 27/68 (39%)
Query: 133 QSLPIY----------KLKHEL---IKAVSD-----------NQILIVIGETGSGKT--T 166
+ +PIY + ++E+ I A+SD NQ L++ GE+G+GKT T
Sbjct: 130 KRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189
Query: 167 -QITQYLA 173
++ QYLA
Sbjct: 190 KKVIQYLA 197
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 33.8 bits (78), Expect = 0.088
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 27/68 (39%)
Query: 133 QSLPIY----------KLKHEL---IKAVSD-----------NQILIVIGETGSGKTT-- 166
+ LPIY + ++ I AV++ NQ +IV GE+G+GKT
Sbjct: 114 EQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173
Query: 167 -QITQYLA 173
+Y A
Sbjct: 174 KYAMRYFA 181
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 32.7 bits (74), Expect = 0.11
Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 18/154 (11%)
Query: 152 QILIVIGETGSGKTTQITQYLAEA-GFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQ 210
++V+G +GSGK++ + + +AEA G+ P + MS + ++
Sbjct: 19 GSIVVMGVSGSGKSS-VGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPW-- 75
Query: 211 EVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIML----DEAHERTIHTDV 266
I + ++ R+ L + + + L ER H
Sbjct: 76 --LAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTG 133
Query: 267 LFDPTKL--SKFKKNQRLEPLYNKYEEPNAWRIS 298
F P+ L ++ + LE E +
Sbjct: 134 HFMPSSLLQTQL---ETLEDP---RGEVRTVAVD 161
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 33.1 bits (75), Expect = 0.11
Identities = 16/120 (13%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAE 202
+L +++ + + +++G GK++ + +L E I C + + + +
Sbjct: 23 KLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGI---LIDCRELYAERGHITREELIK 79
Query: 203 EFGCRLGQEVGYTIRFEDCTSSETL---IKYMTDGMLLRECLVDLDLNNYSVIMLDEAHE 259
E + + +F+ + + L + ++ + RE + ++ DEA
Sbjct: 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQY 139
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 33.4 bits (75), Expect = 0.13
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 16/131 (12%)
Query: 151 NQILIVIGETGSGKTTQITQYLA-EAGFTARGKIGCTQPRRVAAMSVAKRV-AEEFGCRL 208
+I+ G T SGKT Y A + F+A+ + C P ++ A + ++ A C L
Sbjct: 155 RKIIFHSGPTNSGKT-----YHAIQKYFSAKSGVYCG-PLKLLAHEIFEKSNAAGVPCDL 208
Query: 209 --GQEVGYTI------RFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHER 260
G+E CT + + ++ E + D
Sbjct: 209 VTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC 268
Query: 261 TIHTDVLFDPT 271
+ +P
Sbjct: 269 AEEVHLCGEPA 279
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 31.6 bits (72), Expect = 0.34
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 144 LIKAVSDNQILIVIGETGSGKTT 166
+ ++ + +IV G TGSGKTT
Sbjct: 164 IKDGIAIGKNVIVCGGTGSGKTT 186
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 30.4 bits (69), Expect = 0.46
Identities = 5/23 (21%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 153 ILIVIGETGSGKTTQITQYLAEA 175
++I+ G K+T + L++
Sbjct: 3 LIILEGPDCCFKST-VAAKLSKE 24
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 31.5 bits (72), Expect = 0.47
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 151 NQILIVIGETGSGKT---TQITQYLAEAG 176
+Q +IV GE+G+GKT + +YL E+
Sbjct: 140 SQSIIVSGESGAGKTENTKFVLRYLTESY 168
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 31.3 bits (71), Expect = 0.53
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 144 LIKAVSDNQILIVIGETGSGKTT 166
L A+ IV+GET SGKTT
Sbjct: 253 LWLAIEHKFSAIVVGETASGKTT 275
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 31.0 bits (70), Expect = 0.53
Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 106 PEWKKHVIGGKKSSFGKKTNLTIVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKT 165
+K+ + G + G K E+ + + + + + ++ + L+V G TG+GK+
Sbjct: 12 APFKRF-LRGTRIVSGGKLKRMTREKAKQVTVAGVP---MPRDAEPRHLLVNGATGTGKS 67
Query: 166 TQITQYL 172
+ +
Sbjct: 68 VLLRELA 74
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.4 bits (68), Expect = 0.59
Identities = 24/156 (15%), Positives = 55/156 (35%), Gaps = 12/156 (7%)
Query: 149 SDNQILIVIGETGSGKTTQITQYLAEA-GFTARGKIGCTQPRRVAAMSVAKRVAEEFGCR 207
D+ I +++G +GSGK+ + +A R + M+ + + ++
Sbjct: 6 HDHHIYVLMGVSGSGKSA-VASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP 64
Query: 208 LGQEVGYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIM---LDEAHERTIHT 264
Q + T+ +LI R+ L + + N + + D R
Sbjct: 65 WLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKAR 124
Query: 265 DVLFDPTKL--SKFKKNQRLEPLYNKYEEPNAWRIS 298
F T++ ++F + L+ +E + +
Sbjct: 125 KGHFFKTQMLVTQF---ETLQEP--GADETDVLVVD 155
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 31.1 bits (71), Expect = 0.63
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 148 VSDNQILIVIGETGSGKTT 166
+ +++ ++G G GKTT
Sbjct: 309 IKKGEVIGIVGPNGIGKTT 327
Score = 27.3 bits (61), Expect = 9.6
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 148 VSDNQILIVIGETGSGKTT 166
V + ++ ++G G+GK+T
Sbjct: 44 VKEGMVVGIVGPNGTGKST 62
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 30.8 bits (70), Expect = 0.67
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 144 LIKAVSDNQILIVIGETGSGKTT 166
L +AV ++++V GETGSGKTT
Sbjct: 168 LRRAVQLERVIVVAGETGSGKTT 190
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 30.4 bits (69), Expect = 0.68
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 153 ILIVI-GETGSGKTTQI---TQYLAEAGFTAR 180
+LI I G G+GK T + + AG +
Sbjct: 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 30.7 bits (69), Expect = 0.69
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 17/81 (20%)
Query: 136 PIYKLKHELIKAVSDNQILIVIGETGSGKTTQ---ITQYLAEAGFTARGKIGCTQPRRVA 192
+ + + ++ + ++ G+ G GKTT YLAE G +V
Sbjct: 11 SLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKG------------LKVV 58
Query: 193 AMSV--AKRVAEEFGCRLGQE 211
+S A + + F G E
Sbjct: 59 IVSTDPAHSLRDIFEQEFGHE 79
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 30.1 bits (67), Expect = 0.72
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 152 QILIVIGETGSGKTTQITQYLAEA 175
IL++ G GSGK+T I + LA
Sbjct: 10 NILLLSGHPGSGKST-IAEALANL 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.0 bits (70), Expect = 0.72
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 27/90 (30%)
Query: 133 QSLPIY----------KLKHEL---IKAVSD-----------NQILIVIGETGSGKTT-- 166
+ LPIY K +HE+ I A++D +Q ++ GE+G+GKT
Sbjct: 127 KQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENT 186
Query: 167 -QITQYLAEAGFTARGKIGCTQPRRVAAMS 195
++ QYLA + +GK + + +
Sbjct: 187 KKVIQYLAVVASSHKGKKDTSITQGPSFSY 216
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 30.4 bits (69), Expect = 0.90
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 148 VSDNQILIVIGETGSGKTT 166
+ +++ ++G G GKTT
Sbjct: 379 IRKGEVIGIVGPNGIGKTT 397
Score = 28.8 bits (65), Expect = 3.1
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 139 KLKHELIKAVSDNQILIVIGETGSGKTT 166
+ V D ++ ++G G+GKTT
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTT 132
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 30.4 bits (69), Expect = 1.0
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 148 VSDNQILIVIGETGSGKTT 166
+ +I+ ++G G GKTT
Sbjct: 291 AKEGEIIGILGPNGIGKTT 309
Score = 28.8 bits (65), Expect = 2.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 140 LKHELIKAVSDNQILIVIGETGSGKTT 166
K + +N IL V+G+ G GKTT
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTT 40
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 30.2 bits (67), Expect = 1.2
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 130 EQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPR 189
+ + + +L + VS ++++V G G GKT +I + P
Sbjct: 140 DMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSR-----VNFEEDLILV-PG 193
Query: 190 RVAAMSVAKRVAEE 203
R AA + +R
Sbjct: 194 RQAAEMIRRRANAS 207
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.8 bits (66), Expect = 1.2
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 154 LIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVG 213
L+V+GE+G GK+T I ++ + ++ + +K + +E G +L +
Sbjct: 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIV 93
Query: 214 YTIRFEDCTSSETLIKYMTD 233
T F D + + + D
Sbjct: 94 DTPGFGDAVDNSNCWQPVID 113
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.2 bits (65), Expect = 1.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 153 ILIVIGETGSGKTTQITQYLAEAGFTARGK 182
IL ++G + SGKTT IT+ + RG
Sbjct: 4 ILSIVGTSDSGKTTLITRMMPI--LRERGL 31
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 30.1 bits (68), Expect = 1.3
Identities = 13/80 (16%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 128 IVEQRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQ 187
V ++ + + + ++ ++ ++++++ G G+GK+T T+ +A+ + ++
Sbjct: 181 AVPKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKST-TTKAVADLAESLGLEV---- 235
Query: 188 PRRVAAMS--VAKRVAEEFG 205
+ A + A+R+ E G
Sbjct: 236 --GLCAPTGKAARRLGEVTG 253
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 29.3 bits (65), Expect = 1.6
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 152 QILIVIGETGSGKTTQITQYLAEA 175
+ ++V+G +GSGKTT I +A+
Sbjct: 30 RHVVVMGVSGSGKTT-IAHGVADE 52
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA,
N project on protein structural and functional analyses;
2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 29.4 bits (67), Expect = 1.6
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 20/79 (25%)
Query: 91 TGMDSLVVTPISQ----DLPEWKKHVIGGKKSSFGKKTNLTIVEQRQSLPIYKLKHELIK 146
TG D I L ++ I +S+ T + Q+ ++P I
Sbjct: 12 TGPDYSATNVIENFDELKLDPTIRNNI--LLASY---QRPTPI-QKNAIPA-------IL 58
Query: 147 AVSDNQILIVIGETGSGKT 165
D ++ +TGSGKT
Sbjct: 59 EHRD---IMACAQTGSGKT 74
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 29.1 bits (66), Expect = 1.6
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 153 ILIVI--GETGSGKTTQITQYLAEAGFTARGKI 183
LI+I + +GKTTQ L + K+
Sbjct: 6 KLILIEGLD-RTGKTTQC-NILYKK-LQPNCKL 35
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 29.2 bits (66), Expect = 1.7
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 153 ILIVIGETGSGKTTQITQYLAEA 175
+ + GE G+GKT ++A+
Sbjct: 25 FIALTGEPGTGKTIFSLHFIAKG 47
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 29.6 bits (67), Expect = 2.0
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 148 VSDNQILIVIGETGSGKTT 166
SD++IL+++GE G+GKTT
Sbjct: 375 FSDSEILVMMGENGTGKTT 393
Score = 29.2 bits (66), Expect = 2.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 147 AVSDNQILIVIGETGSGKTT 166
Q+L ++G G GK+T
Sbjct: 99 TPRPGQVLGLVGTNGIGKST 118
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 28.7 bits (65), Expect = 2.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 148 VSDNQILIVIGETGSGKTT 166
+++ + L+V G TGSGK+T
Sbjct: 30 INEGECLLVAGNTGSGKST 48
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription
factor, transcription/DNA complex; 2.25A {Homo sapiens}
SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Length = 149
Score = 28.2 bits (62), Expect = 2.3
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 38 LPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIF 74
LP ++ RI E A G R I+ + + + I
Sbjct: 33 LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 69
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 29.1 bits (66), Expect = 2.4
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 10/35 (28%)
Query: 131 QRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKT 165
Q+ S+P+ I + D L+ +TGSGKT
Sbjct: 83 QKCSIPV-------ISSGRD---LMACAQTGSGKT 107
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 29.1 bits (65), Expect = 2.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 153 ILIVIGETGSGKTTQITQYLAEA 175
+V G +G+GKT Q+L
Sbjct: 41 STLVSGTSGTGKTLFSIQFLYNG 63
Score = 29.1 bits (65), Expect = 2.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 153 ILIVIGETGSGKTTQITQYLAEA 175
I++ G TG+GKT +++++ A
Sbjct: 283 IILATGATGTGKTLLVSRFVENA 305
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 28.3 bits (63), Expect = 2.4
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 153 ILIVIGETGSGKTTQITQYLAEAGFT 178
++++ G GSGK+ + L E G
Sbjct: 3 VILITGMPGSGKSEF-AKLLKERGAK 27
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 28.6 bits (64), Expect = 2.4
Identities = 24/138 (17%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVA- 201
E+ + + + +I+ TGSGK T++ Y+A+ + K ++P +V + +V
Sbjct: 40 EVAQPALEGKNIIICLPTGSGK-TRVAVYIAKDHLDKKKK--ASEPGKVIVL--VNKVLL 94
Query: 202 -----EEFGCRLGQEVGYTIRFE-DCTSSETLIKYMTDGML-------LRECLVD----- 243
+ ++ I D + + + + L L++
Sbjct: 95 VEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGE 154
Query: 244 ---LDLNNYSVIMLDEAH 258
+ L+++S+I++DE H
Sbjct: 155 DAGVQLSDFSLIIIDECH 172
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 28.3 bits (64), Expect = 2.8
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 154 LIVI--GETGSGKTTQI---TQYLAEAGFTA 179
LIV+ + +GK+TQ + L AG A
Sbjct: 11 LIVLEGVD-RAGKSTQSRKLVEALCAAGHRA 40
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 28.7 bits (64), Expect = 2.8
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 150 DNQILIVIGETGSGKTT 166
+ I +V G G+GK++
Sbjct: 22 QSGITVVEGPNGAGKSS 38
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 28.7 bits (65), Expect = 2.9
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 10/35 (28%)
Query: 131 QRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKT 165
Q+ ++PI IK D L+ +TGSGKT
Sbjct: 42 QKHAIPI-------IKEKRD---LMACAQTGSGKT 66
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 28.3 bits (64), Expect = 3.0
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 153 ILIVI-GETGSGKTTQI---TQYLAEAGFTA 179
IV G SGK+TQ +YL
Sbjct: 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 28.1 bits (62), Expect = 3.2
Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 22/171 (12%)
Query: 154 LIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEE-FGCRLGQEV 212
+++ G G GKTT + + LA K G ++V EE +E
Sbjct: 14 ILLTGTPGVGKTT-LGKELAS-------KSGLKY------INVGDLAREEQLYDGYDEEY 59
Query: 213 GYTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNY--SVIMLDEAHERTIHTDVLFDP 270
I ED E + G+++ D + V +L ++ +
Sbjct: 60 DCPILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLR-TDTNVLYERLETRG 118
Query: 271 TKLSKFKKNQRLEPLYNKYEEPNAWRISRVVIATNIAETSLTIDGIFYVVD 321
K N + E YEE A +V S + + VD
Sbjct: 119 YNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQL----PSNKPEELENNVD 165
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 28.6 bits (63), Expect = 3.3
Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 154 LIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVG 213
L+V+GE+G GK+T I ++ + ++ + +K + +E G +L +
Sbjct: 11 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIV 70
Query: 214 YTIRFEDCTSSETLIKYMTDGMLLRECLVDLDLNNYSVIMLDEAHERTIHTDVLF 268
T F D + + + D + D LN S + + + + + F
Sbjct: 71 DTPGFGDAVDNSNCWQPVID--YIDSKFEDY-LNAESRVNRRQMPDNRVQCCLYF 122
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 28.2 bits (62), Expect = 3.5
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 154 LIVIGETGSGKTTQI-TQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEV 212
L+V+GE+G GK+T I + +L + + R + + EE G +L V
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80
Query: 213 GYTIRFEDCTSSETLIKYMTD 233
T + D + K +
Sbjct: 81 VDTPGYGDAINCRDCFKTIIS 101
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 28.1 bits (63), Expect = 3.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 153 ILIVIGETGSGKTTQITQYLAE 174
++++ G G+GKT Q+L
Sbjct: 25 VVLLSGGPGTGKTIFSQQFLWN 46
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 28.0 bits (62), Expect = 3.6
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 151 NQILIVIGETGSGKTTQITQYLAE 174
++ I+ G G GK+T + LA
Sbjct: 2 KKLYIITGPAGVGKSTT-CKRLAA 24
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.7 bits (61), Expect = 3.6
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 153 ILIVIGETGSGKTTQITQYLAEAGFTARG 181
+ V+G SGKTT + +++A G
Sbjct: 6 VWQVVGYKHSGKTTLMEKWVAA--AVREG 32
>2k27_A Paired box protein PAX-8; paired domain, solution structure,
triple frequency, 3D NMR, induced FIT, alternative
splicing, developmental protein; NMR {Homo sapiens}
Length = 159
Score = 27.9 bits (61), Expect = 3.6
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 38 LPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGI 73
LP ++ RI + A G R I+ + + + I
Sbjct: 26 LPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 27.9 bits (61), Expect = 4.0
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 153 ILIVIGETGSGKTTQITQYLAEAGFTARG 181
+L +G+GKTT + + + ARG
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPA--LCARG 34
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.0
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 5/28 (17%)
Query: 5 QEEIDTACEILYERMKSLGPD-VPELII 31
++ + L +K D P L I
Sbjct: 19 KQALKK----LQASLKLYADDSAPALAI 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 28.3 bits (64), Expect = 4.1
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 156 VIGETGSGKTT 166
V+GETGSGK+T
Sbjct: 374 VLGETGSGKST 384
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 27.3 bits (61), Expect = 4.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 150 DNQILIVIGETGSGKTT 166
I ++IG+ GSGK++
Sbjct: 22 KEGINLIIGQNGSGKSS 38
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 28.7 bits (64), Expect = 4.1
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 154 LIVIGETGSGKTTQITQYLAEA 175
LI++G+ G GKT + + +A
Sbjct: 926 LILVGKAGCGKTA-TWKTVIDA 946
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.9 bits (62), Expect = 4.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 153 ILIVIGETGSGKTTQITQYLAEA 175
+++ G TG+GKTT Q++ +
Sbjct: 32 TVLLTGGTGTGKTTFAAQFIYKG 54
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 27.6 bits (62), Expect = 4.2
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 154 LIVI-GETGSGKTTQI---TQYLAEAGF 177
LIV G SGKTTQ + +
Sbjct: 6 LIVFEGLDKSGKTTQCMNIMESIPANTI 33
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 28.3 bits (64), Expect = 4.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 153 ILIVIGETGSGKTT 166
I++V G TGSGK+T
Sbjct: 169 IILVTGPTGSGKST 182
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 28.3 bits (63), Expect = 4.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 148 VSDNQILIVIGETGSGKTTQITQYLAE 174
+S+++ LI+ G GSGKT +T L
Sbjct: 1301 LSEHRPLILCGPPGSGKTMTLTSTLRA 1327
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 27.7 bits (62), Expect = 4.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 154 LIVIGETGSGKTTQITQY 171
L+++G TGSGKTT + Q
Sbjct: 5 LMIVGNTGSGKTTLLQQL 22
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.7 bits (62), Expect = 4.7
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 137 IYKLKHELIKAVSDNQILIVI-GETGSGKTT---QITQYLAEAGFT 178
I L ++ + ++++ I G + SGKTT Q++Q L E G +
Sbjct: 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS 52
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 27.9 bits (63), Expect = 4.8
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 14/37 (37%)
Query: 131 QRQSLPIYKLKHELIKAVS--DNQILIVIGETGSGKT 165
Q Q P+ A+S D ++ + +TGSGKT
Sbjct: 56 QAQGWPV---------ALSGLD---MVGVAQTGSGKT 80
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 27.4 bits (60), Expect = 5.0
Identities = 6/25 (24%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 151 NQILIVIGETGSGKTTQITQYLAEA 175
+++I+ G + +GK+ I + L
Sbjct: 3 TRMIILNGGSSAGKSG-IVRCLQSV 26
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 27.9 bits (63), Expect = 5.1
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 148 VSDNQILIVIGETGSGKTT 166
+ ++ ++G G GK+T
Sbjct: 31 IKRGEVTAILGGNGVGKST 49
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 27.6 bits (61), Expect = 5.3
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 153 ILIVIGETGSGKTTQITQYLAEA 175
++IV G +GKTT ++Q LA
Sbjct: 7 LIIVTGHPATGKTT-LSQALATG 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 27.5 bits (62), Expect = 5.6
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 138 YKLKHELIKAVS----DNQILIVIGETGSGKTT 166
Y+ ++ L + ++ IL V+G+ G GK+T
Sbjct: 14 YQAENFLFQQLNFDLNKGDILAVLGQNGCGKST 46
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 27.5 bits (62), Expect = 5.8
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 10/35 (28%)
Query: 131 QRQSLPIYKLKHELIKAVSDNQILIVIGETGSGKT 165
Q Q+ PI + LIV+ +TG+GKT
Sbjct: 47 QSQAWPI----------ILQGIDLIVVAQTGTGKT 71
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 27.7 bits (61), Expect = 6.0
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 153 ILIVIGETGSGKTT---QITQYL 172
I++ +G GSGKTT + +YL
Sbjct: 16 IVVFVGTAGSGKTTLTGEFGRYL 38
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 27.1 bits (61), Expect = 6.2
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Query: 153 ILIVI--GETGSGKTTQI---TQYLAEAGF 177
+LI + GSGKTTQ +YL + G+
Sbjct: 1 MLIAFEGID-GSGKTTQAKKLYEYLKQKGY 29
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 27.3 bits (61), Expect = 6.3
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 137 IYKLKHELIKAVSD------NQILIVIGETGSGKTT 166
K ++ + + +I++G GSGKTT
Sbjct: 10 TLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTT 45
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 28.0 bits (62), Expect = 6.4
Identities = 10/59 (16%), Positives = 23/59 (38%)
Query: 145 IKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEE 203
+K V + ++ G G+GKT + G + P +A + +++ +
Sbjct: 365 VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 423
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 27.8 bits (61), Expect = 6.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 155 IVIGETGSGKTTQITQYLAEA 175
++G +GSGKT I + +
Sbjct: 5 FLVGRSGSGKTKLIINSIQDE 25
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 27.8 bits (61), Expect = 6.9
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
Query: 145 IKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEF 204
I + + ++V T +GKT + +Y + ++ T P + A+S K E
Sbjct: 95 ISCIDRGESVLVSAHTSAGKTV-VAEYAIAQSLKNKQRVIYTSPIK--ALSNQKY--REL 149
Query: 205 GCRLGQEVGYTIRFEDCTSSETLIKYMT----DGMLLRECLVDLDLNNYSVIMLDEAH 258
+VG + + + MT ML R + + ++ DE H
Sbjct: 150 -LAEFGDVGLMTG-DITINPDAGCLVMTTEILRSMLYRG---SEVMREVAWVIFDEVH 202
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 27.1 bits (61), Expect = 7.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 153 ILIVI-GETGSGKTTQI---TQYLAEAGF 177
+ I G GSGK+TQI QYL + G
Sbjct: 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGK 29
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 27.3 bits (61), Expect = 7.4
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 150 DNQILIVIGETGSGKTT 166
I ++IG+ GSGK++
Sbjct: 22 KEGINLIIGQNGSGKSS 38
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 27.2 bits (61), Expect = 7.4
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 161 GSGKTTQI---TQYLAEAGF 177
G+GKTT + L + G
Sbjct: 13 GAGKTTARNVVVETLEQLGI 32
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 27.5 bits (60), Expect = 7.5
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
Query: 145 IKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEF 204
I + + ++V T +GKT + +Y + ++ T P + A+S K E
Sbjct: 193 ISCIDRGESVLVSAHTSAGKTV-VAEYAIAQSLKNKQRVIYTSPIK--ALSNQKY--REL 247
Query: 205 GCRLGQEVGYTIRFEDCTSSETLIKYMT----DGMLLRECLVDLDLNNYSVIMLDEAH 258
+VG + + + MT ML R + + ++ DE H
Sbjct: 248 -LAEFGDVGLMTG-DITINPDAGCLVMTTEILRSMLYRG---SEVMREVAWVIFDEVH 300
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 27.5 bits (61), Expect = 8.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 150 DNQILIVIGETGSGKTT 166
+ I+ +IGE GSGK++
Sbjct: 24 EKGIVAIIGENGSGKSS 40
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases,
center for structural genomics of infectious DISE
ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 27.2 bits (61), Expect = 8.0
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
Query: 161 GSGKTTQI---TQYLAEAGF 177
G+GK+T I + L + G
Sbjct: 37 GAGKSTAIQVVVETLQQNGI 56
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 27.2 bits (60), Expect = 8.2
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 17/68 (25%)
Query: 149 SDNQILIVIGETGSGKTTQ---ITQYLAEAGFTARGKIGCTQPRRVAAMSV--AKRVAEE 203
+ + V G+ G GKTT + LA+ R V +S A +++
Sbjct: 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVR------------RSVLLLSTDPAHNLSDA 61
Query: 204 FGCRLGQE 211
F + G+E
Sbjct: 62 FSQKFGKE 69
>3snr_A Extracellular ligand-binding receptor; structural genomics,
APC102214, PSI-biology, midwest center structural
genomics, MCSG; HET: MSE TYR PHE; 1.49A
{Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A*
3ukj_A* 3tx6_A*
Length = 362
Score = 27.3 bits (61), Expect = 8.3
Identities = 5/31 (16%), Positives = 17/31 (54%)
Query: 146 KAVSDNQILIVIGETGSGKTTQITQYLAEAG 176
+ V++++ +++G + + + I+ EA
Sbjct: 63 RFVTESKADVIMGSSVTPPSVAISNVANEAQ 93
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology;
HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB:
4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A*
Length = 213
Score = 26.8 bits (60), Expect = 8.4
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 161 GSGKTTQIT---QYLAEAGF 177
G+GK+T + L E G
Sbjct: 16 GAGKSTNRDYLAERLRERGI 35
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 26.4 bits (59), Expect = 8.6
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 133 QSLPIYKLKHELIK-AVSDNQILIVIGETGSGK 164
S I ++ E+ A + + + GE GS
Sbjct: 9 NSAAIQEMNREVEAAAKRTSPVFL-TGEAGSPF 40
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 27.5 bits (60), Expect = 8.6
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 23/118 (19%)
Query: 155 IVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRV-----AEEFGCRLG 209
+++ TG GKT A A ++ + + M + AE F
Sbjct: 27 LIVLPTGLGKT-------LIAMMIAEYRLTKYGGKVL--MLAPTKPLVLQHAESFRRLFN 77
Query: 210 QEVGYTIRFEDCTSSETL--------IKYMTDGMLLRECLVD-LDLNNYSVIMLDEAH 258
+ S E + T + + L + L + S+I+ DEAH
Sbjct: 78 LPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 26.7 bits (59), Expect = 9.1
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 153 ILIVIGETGSGKTTQITQYLAE 174
I++ IG GSGK+T +++A+
Sbjct: 4 IILTIGCPGSGKSTWAREFIAK 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 27.3 bits (59), Expect = 9.5
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 19/136 (13%)
Query: 143 ELIKAVSDNQILIVIGETGSGKT----TQITQYLAEAGFTARGKIGCTQPRRVAAMSVAK 198
EL + I+ TG GKT +L + +GK+ + V +
Sbjct: 20 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI----PVYE 75
Query: 199 RVAEEFGCRLGQEVGYTIRFEDCTSSETLIK---------YMTDGMLLRECL--VDLDLN 247
+ F + T+ ++ +T +L+ L+
Sbjct: 76 QNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 135
Query: 248 NYSVIMLDEAHERTIH 263
+++++ DE H +
Sbjct: 136 IFTLMIFDECHNTSKQ 151
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 26.9 bits (59), Expect = 9.6
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 153 ILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEV 212
+L+ G+ SGK +T+ L ++G A + ++ + E++ G +
Sbjct: 13 VLLFSGKRKSGKDF-VTEALQS-------RLGA---DVCAVLRLSGPLKEQYAQEHG--L 59
Query: 213 GYTIRFEDCTSSETLIKYMT 232
+ + T E K M
Sbjct: 60 NFQRLLDTSTYKEAFRKDMI 79
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 27.2 bits (59), Expect = 9.9
Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 11/127 (8%)
Query: 143 ELIKAVSDNQILIVIGETGSGKTTQITQYLAEAGFTARGKIGCTQPRRVAAMSVAKRVAE 202
EL + + + ++ TGSGKT + V ++
Sbjct: 14 ELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKN 73
Query: 203 EFGCRLGQEVGYTIRFE-DCTSSETLIKYMTDGML-------LRECLVD---LDLNNYSV 251
F ++ + S+ ++ K + D + L D L+ +++
Sbjct: 74 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTL 133
Query: 252 IMLDEAH 258
++ DE H
Sbjct: 134 MIFDECH 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.385
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,372,905
Number of extensions: 332130
Number of successful extensions: 1357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1301
Number of HSP's successfully gapped: 155
Length of query: 350
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 256
Effective length of database: 4,077,219
Effective search space: 1043768064
Effective search space used: 1043768064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)