BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9591
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U0C|A Chain A, Crystal Structure Of N-Terminal Region Of Type Iii
Secretion First Translocator Ipab (Residues 74-224)
pdb|3U0C|B Chain B, Crystal Structure Of N-Terminal Region Of Type Iii
Secretion First Translocator Ipab (Residues 74-224)
Length = 201
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 201 LNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCK--LFGGGHNSLVEN 258
LN +++LT L LI++ LGE S + K+ + + K F N+L+
Sbjct: 48 LNASSQLTLLIGNLIQI---LGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSE 104
Query: 259 TDWL----RAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE 314
T+ L QIN + A D++I L NK+++I + + +DP+ E+ + E +
Sbjct: 105 TEGLTRDYEKQINKLKNA-----DSKIKDLENKINQIQTRLSELDPESPEKKKLSREEIQ 159
Query: 315 LSRSVDSALVPRTL 328
L+ D+A+ RTL
Sbjct: 160 LTIKKDAAVKDRTL 173
>pdb|5HMG|B Chain B, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|D Chain D, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|F Chain F, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
Length = 175
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + A I ++ KL+++IEK N ++ + SE + R+ +L + L
Sbjct: 35 AADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSY 94
Query: 327 TLERLIALESLHA 339
E L+ALE+ H
Sbjct: 95 NAELLVALENQHT 107
>pdb|3SDY|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody Cr8020
Bound To The Influenza A H3 Hemagglutinin
Length = 176
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + A I ++ KL+++IEK N ++ + SE + R+ +L + L
Sbjct: 35 AADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSY 94
Query: 327 TLERLIALESLHA 339
E L+ALE+ H
Sbjct: 95 NAELLVALENQHT 107
>pdb|2HMG|B Chain B, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|D Chain D, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|F Chain F, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|B Chain B, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|D Chain D, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|F Chain F, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|B Chain B, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|D Chain D, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|F Chain F, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin
pdb|1QFU|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1EO8|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1KEN|B Chain B, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|D Chain D, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|F Chain F, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1HGG|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|3ZTJ|B Chain B, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|D Chain D, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|F Chain F, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|1HGF|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGF|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGF|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|2YPG|B Chain B, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|D Chain D, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|F Chain F, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|1HGI|B Chain B, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGI|D Chain D, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGI|F Chain F, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
Length = 175
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + A I ++ KL+++IEK N ++ + SE + R+ +L + L
Sbjct: 35 AADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSY 94
Query: 327 TLERLIALESLHA 339
E L+ALE+ H
Sbjct: 95 NAELLVALENQHT 107
>pdb|4GMS|B Chain B, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|D Chain D, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|F Chain F, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
Length = 176
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + A I ++ KL+++IEK N ++ + SE + R+ +L + L
Sbjct: 35 AADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSY 94
Query: 327 TLERLIALESLHA 339
E L+ALE+ H
Sbjct: 95 NAELLVALENQHT 107
>pdb|4FQY|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H3 Influenza Hemagglutinin
pdb|4FNK|B Chain B, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FNK|D Chain D, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FNK|F Chain F, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FQR|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|D Chain D, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|F Chain F, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|H Chain H, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|J Chain J, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|N Chain N, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|P Chain P, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|R Chain R, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|T Chain T, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|V Chain V, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|X Chain X, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
Length = 174
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + A I ++ KL+++IEK N ++ + SE + R+ +L + L
Sbjct: 35 AADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSY 94
Query: 327 TLERLIALESLHA 339
E L+ALE+ H
Sbjct: 95 NAELLVALENQHT 107
>pdb|3VUN|B Chain B, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|D Chain D, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|F Chain F, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group
Length = 175
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + A I ++ KL+++IEK N ++ + SE + R+ +L + L
Sbjct: 35 AADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSY 94
Query: 327 TLERLIALESLHA 339
E L+ALE+ H
Sbjct: 95 NAELLVALENQHT 107
>pdb|3EYM|B Chain B, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|D Chain D, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|F Chain F, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
Length = 172
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + A I ++ KL+++IEK N ++ + SE + R+ +L + L
Sbjct: 35 AADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSY 94
Query: 327 TLERLIALESLHA 339
E L+ALE+ H
Sbjct: 95 NAELLVALENQHT 107
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 40 ATLKFKDKTISVN-RADFSDS-LNKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCEL 97
T KF D + N R F +S + L KY +D L DWE G + +P +R +
Sbjct: 81 GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY--PGSQGSPAVDKERFTTLV 138
Query: 98 KELMDEVSQ 106
++L + Q
Sbjct: 139 QDLANAFQQ 147
>pdb|1MQL|B Chain B, Bha Of Ukr63
pdb|1MQL|E Chain E, Bha Of Ukr63
pdb|1MQL|H Chain H, Bha Of Ukr63
pdb|1MQM|B Chain B, BhaLSTA
pdb|1MQM|E Chain E, BhaLSTA
pdb|1MQM|H Chain H, BhaLSTA
pdb|1MQN|B Chain B, BhaLSTC
pdb|1MQN|E Chain E, BhaLSTC
pdb|1MQN|H Chain H, BhaLSTC
Length = 221
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 279 ARITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPRTLERLIAL 334
A I ++ KL+++IEK N ++ + SE + R+ +L + L E L+AL
Sbjct: 43 AAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVAL 102
Query: 335 ESLHA 339
E+ H
Sbjct: 103 ENQHT 107
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 40 ATLKFKDKTISVN-RADFSDS-LNKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCEL 97
T KF D + N R F +S + L KY +D L DWE G + +P +R +
Sbjct: 81 GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY--PGSQGSPAVDKERFTTLV 138
Query: 98 KELMDEVSQ 106
++L + Q
Sbjct: 139 QDLANAFQQ 147
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 40 ATLKFKDKTISVN-RADFSDS-LNKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCEL 97
T KF D + N R F +S + L KY +D L DWE G + +P +R +
Sbjct: 81 GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY--PGSQGSPAVDKERFTTLV 138
Query: 98 KELMDEVSQ 106
++L + Q
Sbjct: 139 QDLANAFQQ 147
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 40 ATLKFKDKTISVN-RADFSDS-LNKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCEL 97
T KF D + N R F +S + L KY +D L DWE G + +P +R +
Sbjct: 81 GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY--PGSQGSPAVDKERFTTLV 138
Query: 98 KELMDEVSQ 106
++L + Q
Sbjct: 139 QDLANAFQQ 147
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 40 ATLKFKDKTISVN-RADFSDS-LNKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCEL 97
T KF D + N R F +S + L KY +D L DWE G + +P +R +
Sbjct: 81 GTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY--PGSQGSPAVDKERFTTLV 138
Query: 98 KELMDEVSQ 106
++L + Q
Sbjct: 139 QDLANAFQQ 147
>pdb|1QU1|A Chain A, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|B Chain B, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|C Chain C, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|D Chain D, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|E Chain E, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185)
Length = 155
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + A I ++ KL+++IEK N ++ + SE + R+ +L + L
Sbjct: 5 AADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSY 64
Query: 327 TLERLIALESLHA 339
E L+ALE+ H
Sbjct: 65 NAELLVALENQHT 77
>pdb|1TI8|B Chain B, H7 Haemagglutinin
Length = 172
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 281 ITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALES 336
I ++ KL+++IEK N +D + +E ++++ + +R + + E L+A+E+
Sbjct: 45 IDQITGKLNRLIEKTNQQFELIDNEFTEVEKQIGNVINWTRDSMTEVWSYNAELLVAMEN 104
Query: 337 LHA 339
H
Sbjct: 105 QHT 107
>pdb|4DJ6|B Chain B, Structure Of The Hemagglutinin From A Highly Pathogenic
H7n7 Influenza Virus
pdb|4DJ6|D Chain D, Structure Of The Hemagglutinin From A Highly Pathogenic
H7n7 Influenza Virus
pdb|4DJ6|F Chain F, Structure Of The Hemagglutinin From A Highly Pathogenic
H7n7 Influenza Virus
pdb|4DJ7|B Chain B, Structure Of The Hemagglutinin Complexed With 3sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ7|D Chain D, Structure Of The Hemagglutinin Complexed With 3sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ7|F Chain F, Structure Of The Hemagglutinin Complexed With 3sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ8|B Chain B, Structure Of The Hemagglutinin Complexed With 6sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ8|D Chain D, Structure Of The Hemagglutinin Complexed With 6sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ8|F Chain F, Structure Of The Hemagglutinin Complexed With 6sln From A
Highly Pathogenic H7n7 Influenza Virus
Length = 177
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 281 ITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALES 336
I ++ KL+++IEK N +D + +E ++++ + +R + + E L+A+E+
Sbjct: 45 IDQITGKLNRLIEKTNQQFELIDNEFTEVERQIGNVINWTRDSMTEVWSYNAELLVAMEN 104
Query: 337 LHA 339
H
Sbjct: 105 QHT 107
>pdb|4FQV|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H7 Influenza Hemagglutinin
pdb|4FQV|D Chain D, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H7 Influenza Hemagglutinin
pdb|4FQV|F Chain F, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H7 Influenza Hemagglutinin
Length = 176
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 281 ITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALES 336
I ++ KL+++IEK N +D + +E ++++ + +R + + E L+A+E+
Sbjct: 45 IDQITGKLNRLIEKTNQQFELIDNEFTEVERQIGNVINWTRDSMTEVWSYNAELLVAMEN 104
Query: 337 LHA 339
H
Sbjct: 105 QHT 107
>pdb|2O8R|A Chain A, Crystal Structure Of Polyphosphate Kinase From
Porphyromonas Gingivalis
pdb|2O8R|B Chain B, Crystal Structure Of Polyphosphate Kinase From
Porphyromonas Gingivalis
Length = 705
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 225 SSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQI-NLIDAAHCDAYDA 279
S ++R+ +L + EHS C GG + + DW + + N I+ A C D
Sbjct: 582 SRNIRVTRLVDXYLEHSRIWCFHNGGKEEVFISSADWXKRNLYNRIETA-CPVLDP 636
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKAN----SVDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + A I ++ KL+++IEK N ++ + SE + R+ +L + L
Sbjct: 356 AADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSY 415
Query: 327 TLERLIALESLHA 339
E L+ALE+ H
Sbjct: 416 NAELLVALENQHT 428
>pdb|1HTM|B Chain B, Structure Of Influenza Haemagglutinin At The Ph Of
Membrane Fusion
pdb|1HTM|D Chain D, Structure Of Influenza Haemagglutinin At The Ph Of
Membrane Fusion
pdb|1HTM|F Chain F, Structure Of Influenza Haemagglutinin At The Ph Of
Membrane Fusion
Length = 138
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 279 ARITHLSNKLDKIIEKANS----VDPKDSERDQRVNELYELSRSVDSALVPRTLERLIAL 334
A I ++ KL+++IEK N ++ + SE + R+ +L + L E L+AL
Sbjct: 6 AAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVAL 65
Query: 335 ESLHA 339
E+ H
Sbjct: 66 ENQHT 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,788,939
Number of Sequences: 62578
Number of extensions: 360353
Number of successful extensions: 1047
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 36
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)