BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9591
(399 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3ZCF0|DCTN2_BOVIN Dynactin subunit 2 OS=Bos taurus GN=DCTN2 PE=2 SV=1
Length = 403
Score = 167 bits (424), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 215/387 (55%), Gaps = 35/387 (9%)
Query: 26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
TS ++E + ++ A KFKDK + DFSD + K + GY+ S ++E++ +G K
Sbjct: 39 TSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGEYEMLGEGLGVK 96
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
ETP QKYQRL E++EL EV +IK + SA+++ V +Q+ L Q+ A L+K
Sbjct: 97 ETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVVLAKQLAALKQQLVASHLEK 156
Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSG-----ELVRYQLGLQ 195
+LGPD +L+D +GA K L+++L+ A NSK S G SG LV Y+L +
Sbjct: 157 LLGPDAAINLTDPDGALAKRLLLQLE--ATKNSKGTGSGGKTTSGTPPDSSLVTYELHSR 214
Query: 196 SQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNS 254
+Q + + AAK+ LE+RL +LE ++VR + +N L C
Sbjct: 215 PEQDKFSQAAKVAELEKRLTELE-------ATVRCDQDAQNPLSAGLQGAC--------- 258
Query: 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE 314
L++ + L+A++ +D A D +AR+ + K+++I + SV+ D++ +V++LYE
Sbjct: 259 LMDTVELLQAKVGALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQSKVHQLYE 316
Query: 315 LSR--SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL 372
+ S +A +P ++RL+ ++ LH QA F LL L++ Q +A +L +N +LLT +
Sbjct: 317 TIQRWSPIAASLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIACSLKDNATLLTQV 376
Query: 373 EGKMGSDVERIKQDVKALDEKIKALKK 399
+ M ++ I+ + +DE++K L K
Sbjct: 377 QTTMCENLSTIEGNFANIDERMKKLGK 403
>sp|Q66J30|DCT2A_XENLA Dynactin subunit 2-A OS=Xenopus laevis GN=dctn2-a PE=2 SV=1
Length = 403
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 210/385 (54%), Gaps = 31/385 (8%)
Query: 26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
TS ++E + ++ A KFKDK + DFSD + K + GY+ S ++E++ +G K
Sbjct: 39 TSTSVEHIIVNPNAAYDKFKDKKVGTRSLDFSDRITKSKRTGYE--SGEYEILGEGIGMK 96
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
ETP QKYQRL E++EL EV + + + SA+++ V +Q+ L Q+ + L+K
Sbjct: 97 ETPQQKYQRLLHEVQELTQEVEKTQSTVKESAAEEKLTPVALAKQVASLKQQLVSTHLEK 156
Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDSFAL---SNSKTPSSKGGVGSGELVRYQLGLQSQ 197
+LGPD +L+D +GA K L+ +LD+ K+P+ G + LV Y+L + +
Sbjct: 157 LLGPDAAINLTDPDGALAKRLLTQLDAAKTRKNPEGKSPAKGPGPDTENLVTYELHCRPE 216
Query: 198 QAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNSLV 256
Q + + AAK+ LE+RL GE +VR + +N L C L+
Sbjct: 217 QNKFSQAAKMAELEKRL-------GELEVAVRCDQDTQNPLTVGLQGSC---------LM 260
Query: 257 ENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELS 316
+ + L+A++NL+D A D +AR+ + K+++I + +++ D+E +V++LYE
Sbjct: 261 DTVEILQAKVNLLDVASLDQVEARLQSVLGKMNEIAKHKAAIEDADTES--KVHQLYETV 318
Query: 317 RSVDS--ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG 374
+ DS +P+ ++RL+ L+ LH QA F LL L++ Q +A++L +N + L ++
Sbjct: 319 QKWDSMSGTLPQVVQRLLTLKQLHEQAMQFGQLLTHLDTTQQMIANSLKDNTNALAMVQK 378
Query: 375 KMGSDVERIKQDVKALDEKIKALKK 399
M ++ ++ + +D +IK L K
Sbjct: 379 AMKENLATVEDNFSNIDGRIKKLSK 403
>sp|Q5FW42|DCTN2_XENTR Dynactin subunit 2 OS=Xenopus tropicalis GN=dctn2 PE=2 SV=1
Length = 405
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 210/384 (54%), Gaps = 29/384 (7%)
Query: 26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGE--K 83
TS ++E + ++ A KFKDK + DFSD + K + GY+ S ++E++ +G K
Sbjct: 41 TSTSVEHIIVNPNAAYDKFKDKKVGTRGLDFSDRITKSKRTGYE--SGEYEILGEGIGIK 98
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
ETP QKYQRL E++EL EV + + + SA+++ V +Q+ L Q+ + L+K
Sbjct: 99 ETPQQKYQRLLHEIQELTQEVEKAQSTVKESAAEEKLTPVALAKQVAALKQQLVSTHLEK 158
Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDSFAL---SNSKTPSSKGGVGSGELVRYQLGLQSQ 197
+LGPD +L+D +GA K L+ +LD K+P+ G + V Y+L + +
Sbjct: 159 LLGPDAAINLTDPDGALAKRLLTQLDVAKTRKNPEGKSPAKGPGPDNENFVTYELHCRPE 218
Query: 198 QAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVE 257
Q + + AAK+ LE+RL GE ++VR + + G + L++
Sbjct: 219 QNKFSQAAKMAELEKRL-------GELEAAVR--------NDQDTQNPLTVGLQGSCLMD 263
Query: 258 NTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSR 317
+ L+A++NL+D A D +AR+ + K+++I + +++ D+E +V++LYE +
Sbjct: 264 TVEILQAKVNLLDVASLDQVEARLQSVLGKMNEIAKHKAAIEDADTES--KVHQLYETVQ 321
Query: 318 SVDS--ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK 375
DS + +P+ ++RL+ L+ LH QA F LL L++ Q ++++L +N + L ++
Sbjct: 322 KWDSMSSTLPQVVQRLLMLKQLHEQAMQFGQLLAHLDTTQQMISNSLKDNTNALAMVQKA 381
Query: 376 MGSDVERIKQDVKALDEKIKALKK 399
M ++ ++ + ++D +IK L K
Sbjct: 382 MKENLATVEDNFTSIDARIKKLSK 405
>sp|Q99KJ8|DCTN2_MOUSE Dynactin subunit 2 OS=Mus musculus GN=Dctn2 PE=1 SV=3
Length = 402
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 216/384 (56%), Gaps = 30/384 (7%)
Query: 26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
+S ++E + ++ A KFKDK + DFSD + K + GY+ S D+E++ +G K
Sbjct: 39 SSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGDYEMLGEGLGVK 96
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
ETP QKYQRL E++EL EV +IK + SA+++ V +Q+ L Q+ A L+K
Sbjct: 97 ETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVVLAKQLAALKQQLVASHLEK 156
Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDS--FALSNSKTPSSKGGVGSGELVRYQLGLQSQQ 198
+LGPD +L+D +GA K L+++L++ + +S ++ G LV Y+L + +Q
Sbjct: 157 LLGPDAAINLADPDGALAKRLLLQLEATKSSKGSSGGKATAGAPPDSSLVTYELHSRPEQ 216
Query: 199 AQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNSLVE 257
+ + AAK+ LE+RL +LE ++VR + +N L C L+E
Sbjct: 217 DKFSQAAKVAELEKRLTELE-------ATVRCDQDAQNPLSAGLQGAC---------LME 260
Query: 258 NTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSR 317
+ L+A+++ +D A D +AR+ + K+++I + SV+ D++ +V++LYE +
Sbjct: 261 TVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQNKVHQLYETIQ 318
Query: 318 --SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK 375
S ++ +P ++RL+ ++ LH QA F LL L++ Q +AS+L +N +LLT ++
Sbjct: 319 RWSPVASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMMASSLKDNTALLTQVQTT 378
Query: 376 MGSDVERIKQDVKALDEKIKALKK 399
M ++ ++ + ++D ++K L K
Sbjct: 379 MRENLATVEGNFASIDARMKRLGK 402
>sp|Q6IRB3|DCT2B_XENLA Dynactin subunit 2-B OS=Xenopus laevis GN=dctn2-b PE=2 SV=1
Length = 403
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 214/387 (55%), Gaps = 35/387 (9%)
Query: 26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
TS ++E + ++ A KFKDK + DFSD + K + GY+ S ++E++ +G K
Sbjct: 39 TSTSVEHIIVNPNAAYDKFKDKKVGTRCLDFSDRITKSKRTGYE--SGEYEILGEGLGIK 96
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
ETP QKYQRL E++EL EV + + + SA+++ V +Q+ L Q+ + L+K
Sbjct: 97 ETPQQKYQRLLHEVQELTQEVEKTQSTLKESATEEKLTPVALAKQVAALKQQLVSTHLEK 156
Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTP----SSKG-GVGSGELVRYQLGLQ 195
+LGPD +L+D +GA K L+ +LD A K P S+KG G + LV Y+L +
Sbjct: 157 LLGPDAAINLTDPDGALAKRLLTQLD--AAKTRKDPEGKSSAKGPGPDNENLVTYELHCR 214
Query: 196 SQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNS 254
+Q + + AAK+ LE+RL GE ++VR + +N L C
Sbjct: 215 PEQNKFSQAAKMAELEKRL-------GELEAAVRCDQDTQNPLTVGLQGSC--------- 258
Query: 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE 314
L++ + L+A++NL+D A D +AR+ + K+++I + +++ D+E +V++LYE
Sbjct: 259 LMDTVEILQAKVNLLDVASLDQVEARLQSVLGKMNEIAKHKATIEDADTES--KVHQLYE 316
Query: 315 LSRSVDSALV--PRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL 372
+ DS + P+ ++RL+ L+ LH QA F LL L++ Q ++++L +N + L +
Sbjct: 317 TVQKWDSMSITLPQVVQRLLTLKQLHEQAMQFGQLLTHLDTTQQMISNSLKDNTNALAMV 376
Query: 373 EGKMGSDVERIKQDVKALDEKIKALKK 399
+ M ++ ++ + ++D +IK L K
Sbjct: 377 QKAMKENLATVEDNFSSIDGRIKKLSK 403
>sp|Q7PZ25|DCTN2_ANOGA Probable dynactin subunit 2 OS=Anopheles gambiae GN=Dmn PE=3 SV=3
Length = 387
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 205/377 (54%), Gaps = 42/377 (11%)
Query: 30 IEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETPLQK 89
IE+LH+ K + KF+ K ++ DFSD + + ++ GYD S D+EL +GE+ETPLQ+
Sbjct: 43 IERLHISTKDSIGKFRGKYLT-GEVDFSDGIGRKNRLGYDARSLDYELAGEGERETPLQR 101
Query: 90 YQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQ----VSAIKLDKILGPD 145
RL+CE+ ELM+E+ + +A +KA S + + +VS + ++KL++++G +
Sbjct: 102 CHRLKCEMNELMEEIEASRADTGRTAEEKA--SHETVFGVVSTAKKVLESLKLEQVIGSE 159
Query: 146 LLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAA 205
++ + A K L+ +++ + + + SS V + ELV+ +A
Sbjct: 160 VVAGGAGGGDAEAKKLIAQIEEYRKTGA-VSSSDPKVVANELVQ--------------SA 204
Query: 206 KLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFG-GGHNSLVENTDWLRA 264
++ LE RL H +LE +G + +L G G +L+E + A
Sbjct: 205 RVAQLEHRL---------H-------QLEVAVGAKPERISRLAGTTGTGNLIEAVQNISA 248
Query: 265 QINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS--A 322
+ L+ + D + R+ +L +++ I EK+N+ +D R+Q++ ELYE+++S +
Sbjct: 249 KAALLQPSQLDTIEQRLNNLLQQMNSIQEKSNATG-QDPNREQKILELYEIAKSTEPIVQ 307
Query: 323 LVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVER 382
++P L R++ LESLH A NF+ L ELE+ Q + + + N++LLT ++ ++E
Sbjct: 308 VLPDILNRMLTLESLHKYATNFSKLFAELETTQASILNGVAANKTLLTGVQEAFAQNLEN 367
Query: 383 IKQDVKALDEKIKALKK 399
+ ++VK L+E++ L++
Sbjct: 368 VNKEVKKLEERMTKLQQ 384
>sp|Q1HQF2|DCTN2_AEDAE Probable dynactin subunit 2 OS=Aedes aegypti GN=Dmn PE=2 SV=2
Length = 381
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 203/380 (53%), Gaps = 48/380 (12%)
Query: 27 SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETP 86
+E+IE+LH+ K + KFK K ++ N DFSD + K + GYD +S +W+L +GEKETP
Sbjct: 40 NESIERLHISTKDSYNKFKGKYLTGN-VDFSDRIGKKIRNGYDAVSGEWDLAGEGEKETP 98
Query: 87 LQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQ----VSAIKLDKIL 142
+QK RLQCE+ ELM+E++ + A + +KA S + + ++V + ++KL++ +
Sbjct: 99 IQKCLRLQCEMNELMEEITASQADATKTKEEKA--SYEAVFDVVGTAKKVLESLKLEQAI 156
Query: 143 GPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLN 202
G + + ++ E K L+ +++ + S P+
Sbjct: 157 GSETVAMGAETEA---KKLLTKIEEYKKSVGADPA------------------------K 189
Query: 203 TAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFG-GGHNSLVENTDW 261
TA +L R+ +LE+ RL +LE +G + +L G G +L+E
Sbjct: 190 TATELV-YSSRIAELEH---------RLHELEVAVGAKPEKISRLAGSAGAGNLIEAVQS 239
Query: 262 LRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS 321
+ A+ L+ D + R+ +L K+ I EK+ + +D+ R+Q++ ELYE++++ +
Sbjct: 240 ISAKAALLQPQQLDLIETRLGNLLLKMAAIDEKSAATG-QDANREQKILELYEIAKTTEP 298
Query: 322 --ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSD 379
++P L R+ LESLH A NF+ L ELE+ Q + + +N++LLT ++ +
Sbjct: 299 IVQILPDMLNRMQTLESLHKYATNFSKLFAELETTQASILKGIASNKTLLTGVQEAFAQN 358
Query: 380 VERIKQDVKALDEKIKALKK 399
+E + ++VK LDE++K L++
Sbjct: 359 LENVNKEVKKLDERMKTLQE 378
>sp|Q7T3H1|DCTN2_DANRE Dynactin subunit 2 OS=Danio rerio GN=dctn2 PE=2 SV=1
Length = 405
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 217/387 (56%), Gaps = 37/387 (9%)
Query: 27 SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EKE 84
S+++E++ ++ A KFKDK +S DFSD ++K + GY+ S D+EL+A+G KE
Sbjct: 42 SDSVERIVVNPNAAYDKFKDKHVSAKSLDFSDRISKNRRVGYE--SGDYELLAEGCGVKE 99
Query: 85 TPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQ----VSAIKLDK 140
TP QKYQRL E+ EL +V +I+ + S +++ V ++ VSA LD
Sbjct: 100 TPQQKYQRLVNEIHELCQDVEKIQTSTKESGAEERLTPVALAQQAAQLKQQLVSA-HLDS 158
Query: 141 ILGPDLLESLSDVEGAALKTLVMRLD------SFALSNSKTPSSKGGVGSGELVRYQLGL 194
+LGPD +L+D +GA K L+ +L+ S A ++ KT + KG G ++ Y+L
Sbjct: 159 LLGPDAHINLTDPDGALAKRLLTQLEVARGVRSGAGADGKTAAPKGPDG---VILYELHS 215
Query: 195 QSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNS 254
+ +Q + +AK+ LE+RL +LE +G S + G SS V +S
Sbjct: 216 RPEQEKFTESAKVAELERRLAELETAVGSGS---------DKRGPLSSGVQG------SS 260
Query: 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYE 314
L E + L+A+++ +DAA D +AR+ + K+++I + +++ D+E +V++LY+
Sbjct: 261 LTETLELLQARVSALDAATLDQVEARLQSVLGKMNEIAKHKATME--DAETQSKVSQLYD 318
Query: 315 LSRSVDSAL--VPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL 372
+ + D+ +P+ + RL A+ LH QA F LL L++ Q + ++L +N +LLT +
Sbjct: 319 VVQKWDAMATSLPQVVRRLTAVRELHEQAMQFGQLLTHLDTTQQMINNSLKDNSTLLTQV 378
Query: 373 EGKMGSDVERIKQDVKALDEKIKALKK 399
+ M ++ ++++ ALD+++K L K
Sbjct: 379 QQTMKENLLAVEENFSALDQRMKKLNK 405
>sp|Q6AYH5|DCTN2_RAT Dynactin subunit 2 OS=Rattus norvegicus GN=Dctn2 PE=1 SV=1
Length = 402
Score = 158 bits (400), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 214/384 (55%), Gaps = 30/384 (7%)
Query: 26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
+S ++E + ++ A KFKDK + DFSD + K + GY+ S D+E++ +G K
Sbjct: 39 SSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGDYEMLGEGLGVK 96
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
ETP QKYQRL E++EL EV +IK + SA+++ V +Q+ L Q+ A L+K
Sbjct: 97 ETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVVLAKQLAALKQQLVASHLEK 156
Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGE--LVRYQLGLQSQQ 198
+LGPD +L+D +GA K L+++L++ S + G + LV Y+L + +Q
Sbjct: 157 LLGPDAAINLADPDGALAKRLLLQLEATKSSKGSSGGKSTGGTPPDSSLVTYELHSRPEQ 216
Query: 199 AQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNSLVE 257
+ + AAK+ LE+RL +LE ++VR + +N L C L+E
Sbjct: 217 DKFSQAAKVAELEKRLTELE-------ATVRCDQDAQNPLSAGLQGAC---------LME 260
Query: 258 NTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSR 317
+ L+A++N +D A D +AR+ + K+++I + SV+ D++ +V++LYE +
Sbjct: 261 TVELLQAKVNALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQNKVHQLYETIQ 318
Query: 318 --SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK 375
S ++ +P ++RL+ ++ LH QA F LL L++ Q +AS+L +N +LLT ++
Sbjct: 319 RWSPVASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMMASSLKDNTALLTQVQTT 378
Query: 376 MGSDVERIKQDVKALDEKIKALKK 399
M ++ ++ + ++D ++K L K
Sbjct: 379 MRENLATVEGNFASIDARMKKLGK 402
>sp|Q7K2D2|DCTN2_DROME Probable dynactin subunit 2 OS=Drosophila melanogaster GN=Dmn PE=1
SV=1
Length = 380
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 190/373 (50%), Gaps = 48/373 (12%)
Query: 32 QLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVL-SQDWELVAQGEKETPLQKY 90
+LH+ A +F T+ DF+D + + GYD S D+ELV QGEKETP+QK
Sbjct: 45 RLHISPSVAHKRFSGATVE-GSVDFTDRIGRRMCRGYDTRGSSDYELVGQGEKETPVQKC 103
Query: 91 QRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQ----VSAIKLDKILGPDL 146
QRLQ E+ EL++EV+ ++ + +D+ K S + ++S + ++KL+++LG +
Sbjct: 104 QRLQIEMNELLNEVAALQ--VDRKVADEEKQSYDAVATVISTARKVLESLKLEQVLGKEQ 161
Query: 147 LESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAAK 206
V K L+ +++ F S T G L A+
Sbjct: 162 TPGSKQV-----KALISQVEEFKQSGVLTAIPTPGT-----------------DLAATAR 199
Query: 207 LTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQI 266
+ SLEQR+ +LE +LG KL L +++ +++E L +
Sbjct: 200 VASLEQRISQLEKVLGAQPD-----KLSRLTAATNTT----------NVLEAVRHLSTKA 244
Query: 267 NLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSA--LV 324
LI D + R+T L+ K+D I EK+ S +D++RDQ++ ELY++++ + ++
Sbjct: 245 ALIQPDKLDTIEQRLTSLAGKMDAIAEKS-SGSAQDAKRDQKITELYDIAKRTEPVVEIL 303
Query: 325 PRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIK 384
P +ER+ ALE+LH A NFA ++ E+E Q + ++L NN+ LL S++ ++E I
Sbjct: 304 PHVIERMQALEALHKYANNFAKIIAEIEQKQGTITTSLVNNKELLHSVQETFAQNLETIN 363
Query: 385 QDVKALDEKIKAL 397
V +++++ A+
Sbjct: 364 SKVAKVEQRVAAI 376
>sp|Q13561|DCTN2_HUMAN Dynactin subunit 2 OS=Homo sapiens GN=DCTN2 PE=1 SV=4
Length = 401
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 213/383 (55%), Gaps = 29/383 (7%)
Query: 26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
TS ++E + ++ A KFKDK + DFSD + K + GY+ S ++E++ +G K
Sbjct: 39 TSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE--SGEYEMLGEGLGVK 96
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
ETP QKYQRL E++EL EV +IK + SA+++ V +Q+ L Q+ A L+K
Sbjct: 97 ETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEK 156
Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDSFA-LSNSKTPSSKGGVGSGELVRYQLGLQSQQA 199
+LGPD +L+D +GA K L+++L++ + G LV Y+L + +Q
Sbjct: 157 LLGPDAAINLTDPDGALAKRLLLQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQD 216
Query: 200 QLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIK-LENLLGEHSSSVCKLFGGGHNSLVEN 258
+ + AAK+ LE+RL +LE ++VR + +N L C L+E
Sbjct: 217 KFSQAAKVAELEKRLTELE-------TAVRCDQDAQNPLSAGLQGAC---------LMET 260
Query: 259 TDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSR- 317
+ L+A+++ +D A D +AR+ + K+++I + SV+ D++ +V++LYE +
Sbjct: 261 VELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVE--DADTQSKVHQLYETIQR 318
Query: 318 -SVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKM 376
S ++ +P ++RL+ ++ LH QA F LL L++ Q +A++L +N +LLT ++ M
Sbjct: 319 WSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIANSLKDNTTLLTQVQTTM 378
Query: 377 GSDVERIKQDVKALDEKIKALKK 399
++ ++ + ++DE++K L K
Sbjct: 379 RENLATVEGNFASIDERMKKLGK 401
>sp|Q28Y46|DCTN2_DROPS Probable dynactin subunit 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Dmn PE=3 SV=1
Length = 380
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 193/373 (51%), Gaps = 48/373 (12%)
Query: 32 QLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVL-SQDWELVAQGEKETPLQKY 90
++H+ A A +F T+ DF+D + + GYD+ + ++ELV QGEKETP+QK
Sbjct: 45 RMHISASAAHKRFSGATLE-GSVDFTDRIGRRPGRGYDMRGAGEYELVGQGEKETPVQKC 103
Query: 91 QRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAI----KLDKILGPDL 146
QRLQ E+ EL++EV+ ++ + +D+ K S + ++S + KL+++LG +
Sbjct: 104 QRLQIEMNELLNEVAALQ--VDRKIADEEKQSYDAVATVISTAKKVLDTLKLEQVLGKEQ 161
Query: 147 LESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAAK 206
+ + V K L+ +++ F S T G L + A+
Sbjct: 162 VPNSKQV-----KALISQVEEFKQSGVLTAIPTPGT-----------------DLASTAR 199
Query: 207 LTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQI 266
+ SLEQRL +LE +G KL L +++ +++E L +
Sbjct: 200 VASLEQRLYQLEKTVGAQPE-----KLSRLNAATNTT----------NVLEAVRQLSTKA 244
Query: 267 NLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSA--LV 324
L+ D + R+T L+ K+D I EK+ S +D++RDQ+++ELY++++ + ++
Sbjct: 245 ALLQPDKLDTIEQRLTTLAGKMDSIAEKS-SGSSQDAKRDQKISELYDIAKRTEPVVEIL 303
Query: 325 PRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIK 384
P +ER+ ALESLH A NFA ++ E+E Q + ++L NN+ LL S++ ++E I
Sbjct: 304 PHVIERMQALESLHKYANNFAKIIAEIEHKQGTITTSLVNNKELLHSVQETFAQNLETIT 363
Query: 385 QDVKALDEKIKAL 397
V +++++ A+
Sbjct: 364 NKVAKVEQRVTAI 376
>sp|Q9PTG6|DCTN2_CHICK Dynactin subunit 2 OS=Gallus gallus GN=DCTN2 PE=2 SV=1
Length = 402
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 204/387 (52%), Gaps = 39/387 (10%)
Query: 26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
TS ++E L ++ A KFKDK + + DFSD ++K GY+ S ++E++ +G K
Sbjct: 41 TSTSVEHLIINPNAAFEKFKDKRLGTDGVDFSDRISKSRTTGYE--SGEYEILGEGLGAK 98
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV---QQIEELVSQVSAIKLDK 140
ETP Q+YQRLQ E++EL+ +V QI+ + SA+++ + +Q+E L Q+ + L K
Sbjct: 99 ETPQQRYQRLQHEVQELIRDVEQIQSAVKESAAEEELTPMALARQLEGLKQQLVSCHLQK 158
Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDSFAL---SNSKTPSSKGGVGSGELVRYQLGLQSQ 197
+LGP +D EGA K L +L+ ++ + +K+P G + L + +
Sbjct: 159 LLGPTAAIDFADPEGALAKRLQQQLEVPSVKKAAPAKSPPKAPGPTTDALTFELFWRRPE 218
Query: 198 QAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVE 257
Q Q + AK+ LE+RL +LE + VR E S L G SLVE
Sbjct: 219 QDQFSQTAKIAELEKRLAQLEAM-------VRC--------EPDSQNPLLVGAEGTSLVE 263
Query: 258 NTDWLRAQINLIDAAHCDAYDARIT-HLSNKLDKIIEKANSVDPKDSERDQRVNE-LYEL 315
L+A++N++DAA D +AR+ +K+++I + V +D++ ++++ +YE+
Sbjct: 264 TVQILQAKVNILDAAVLDQVEARLQRRPGSKVNEIAKHKAIV--QDADTQSKIHQVVYEM 321
Query: 316 SRSVD--SALVPRTLERLIALESLHAQAGNFATLLKELESVQ--VDLASNLTNNQSLLTS 371
+ D ++ +P ++RL+ L LH QA F +L L++ Q VD+ Q LL
Sbjct: 322 MQRWDHMASSLPDVVQRLLTLRDLHEQASRFVQVLVHLDTTQQEVDVV------QRLLAE 375
Query: 372 LEGKMGSDVERIKQDVKALDEKIKALK 398
++ M ++ ++ + ++ +IK L+
Sbjct: 376 VQKTMKENLAVVEDNFAEVEARIKRLQ 402
>sp|Q54N50|DCTN2_DICDI Dynactin subunit 2 OS=Dictyostelium discoideum GN=dynB PE=3 SV=1
Length = 430
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 95/408 (23%), Positives = 190/408 (46%), Gaps = 66/408 (16%)
Query: 27 SENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNK--LHKYG--------YDVLSQDWE 76
+E+I++ L ++ LKF ++ + + DFSDS+ K + + G +D+L D
Sbjct: 45 NESIDRSSLKPAKSHLKFANRKFNNDNEDFSDSIYKKSVPRTGGLLKNQTVFDILPSDES 104
Query: 77 LVAQGEKETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSV-QQIEELVSQVSA 135
V ETPLQK+QRLQ E+ +E+ I + D + + Q+ +L +Q+S
Sbjct: 105 KV-----ETPLQKFQRLQYEVMSFREEMQVIADNGGEVEKDIKGVDLTHQLADLQNQLSH 159
Query: 136 IKLDKILGPDLLES-----LSDVEGAALKTLVMRLDSF---ALSNSKTPSS--------- 178
+ ++ L P L E+ S ++ + K L+ ++SF +LS+S T +
Sbjct: 160 LLENEKLQPILDENKQVIHYSQIQNNSSKKLISEIESFTQQSLSSSTTEQNTQQPSNNNT 219
Query: 179 -----KGGVGSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSS-SVRLIK 232
+ V Y+L +Q++ ++ LE+RL KLE G ++ SV + +
Sbjct: 220 TTNITSSSSITPNHVTYELFYTGEQSKSQQLQRIQDLEKRLAKLETATGNKTTDSVPITQ 279
Query: 233 LENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKII 292
S++E ++ +++L+D D ++ +S +++ +
Sbjct: 280 ---------------------SILE----IKEKLSLLDTTKIDVLQQKMKTVSKEMESLK 314
Query: 293 EKANSVDPKDSERDQRVNELYELSRSVD--SALVPRTLERLIALESLHAQAGNFATLLKE 350
+ + + ++++N+++E D VP + RL L SLH + +F+ +
Sbjct: 315 IQDETSTKALTTNEKKINDIFETMNKWDIVGQQVPAIINRLYTLRSLHEEGISFSNHVSN 374
Query: 351 LESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALK 398
LE Q D+ S L +N SL+ ++ S++ IK +++ L+ +I+ L+
Sbjct: 375 LEKQQNDITSLLISNSSLMNKMDDSFKSNLLTIKSNIQQLESRIETLQ 422
>sp|Q09248|DCTN2_CAEEL Probable dynactin subunit 2 OS=Caenorhabditis elegans GN=dnc-2 PE=1
SV=1
Length = 331
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/377 (21%), Positives = 160/377 (42%), Gaps = 79/377 (20%)
Query: 26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EK 83
T +IE + +D +A K+K++ +++ +DFSDS+ K ++ + E+ G
Sbjct: 30 THPDIELISVDVDEALKKYKNRVLNLTSSDFSDSIAKKRRHAFGNNQYVLEVTGAGFSGT 89
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILG 143
ET +K R+ E+ +L +++ EN +D +L
Sbjct: 90 ETAAEKLNRILYEVADLNEQI----RADENLKTD-----------------------LLN 122
Query: 144 PDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLNT 203
++LE+L +KTL A SN KT + V + + T
Sbjct: 123 AEVLENLE----KEVKTL-----QVAQSNGKTARVEHDV--------------ELPNVRT 159
Query: 204 AAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLR 263
+K+ +LE RL ++E ++G SSV +++ + L+
Sbjct: 160 DSKVATLENRLRRIEQVIG-------------------SSVIP-----SAPVLDTIEDLK 195
Query: 264 AQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSAL 323
+ ++ ++ + R+ + KL+KI E + D D D++V+E+ EL + D A
Sbjct: 196 LRCETLNHSYVSGLEQRLNMMLTKLEKIDETRANNDI-DENLDKKVDEILELMQKWDVAC 254
Query: 324 --VPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVE 381
+P + ++ AL LH Q +FA L L++++ L + + + E + ++
Sbjct: 255 SSLPSNVNKVKALNRLHEQVQHFAGGLSHLKTIREKLEKEVAQGREAIIEYESQGKQEIG 314
Query: 382 RIKQDVKALDEKIKALK 398
+ + +K L+ K+ LK
Sbjct: 315 SVVEKLKLLEAKVADLK 331
>sp|P07942|LAMB1_HUMAN Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2
Length = 1786
Score = 32.7 bits (73), Expect = 5.6, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 106/243 (43%), Gaps = 24/243 (9%)
Query: 78 VAQGEKETPLQKYQRLQCELKELMDEVSQIKEPAENSASD--KAKLSVQQIEELVSQVSA 135
V + E + Q+ Q L +++E ++ +SQ++ ++SA+D +A++ +++ + +
Sbjct: 1528 VLKMEMPSTPQQLQNLTEDIRERVESLSQVEVILQHSAADIARAEMLLEEAKRASKSATD 1587
Query: 136 IKLDKILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQ 195
+K+ + + LE + AA K + + + + S + +
Sbjct: 1588 VKVTADMVKEALEEAEKAQVAAEKAIKQADEDIQGTQNLLTSIESETAA----------- 1636
Query: 196 SQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLI-KLENLLGEHSSSVCKLFGGGHNS 254
S++ N + +++ LE+ + +L+ ++S I K+ + + + V K G +
Sbjct: 1637 SEETLFNASQRISELERNVEELKRKAAQNSGEAEYIEKVVYTVKQSAEDVKKTLDGELDE 1696
Query: 255 LVENTDWLRAQINLIDAAHCDAYDAR--ITHLSNKLDKIIEKANSVDP--KDSERDQRVN 310
+ + NLI ++ DAR L N+ ++ +ANS KD ER N
Sbjct: 1697 KYKKVE------NLIAKKTEESADARRKAEMLQNEAKTLLAQANSKLQLLKDLERKYEDN 1750
Query: 311 ELY 313
+ Y
Sbjct: 1751 QRY 1753
>sp|P96747|FLAC_CAMJE Flagellin C OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=flaC PE=4 SV=2
Length = 249
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 260 DWLRAQINLIDAAHCDAYDA---------RITHLSNKLDKIIE---KANSVDPKDSERDQ 307
D LR+Q + ID +AYDA +T++S D++ E K N+ DS++
Sbjct: 47 DSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDSQKGM 106
Query: 308 RVNELYELSRSVDSALVPRTLERLIALESLH--AQAGNFATLLKEL--ESVQVDLASNLT 363
E + S++ + T ++++ +G T L L + + +D ++T
Sbjct: 107 LRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATDGLSIDSQDSIT 166
Query: 364 NNQSLLTSLEGKMGSDVERIKQDVKA 389
N L SL ++GS + I ++ A
Sbjct: 167 NFMDQLGSLRSEIGSGINAITSNINA 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,641,411
Number of Sequences: 539616
Number of extensions: 5033381
Number of successful extensions: 19151
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 302
Number of HSP's that attempted gapping in prelim test: 18861
Number of HSP's gapped (non-prelim): 545
length of query: 399
length of database: 191,569,459
effective HSP length: 120
effective length of query: 279
effective length of database: 126,815,539
effective search space: 35381535381
effective search space used: 35381535381
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)