Query psy9591
Match_columns 399
No_of_seqs 129 out of 174
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 23:35:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04912 Dynamitin: Dynamitin 100.0 4.3E-76 9.2E-81 598.8 34.2 356 21-398 25-388 (388)
2 KOG3958|consensus 100.0 9.2E-65 2E-69 483.5 31.5 344 16-399 20-371 (371)
3 PF07426 Dynactin_p22: Dynacti 97.5 0.0037 7.9E-08 57.7 15.1 118 204-347 4-144 (174)
4 PRK04778 septation ring format 94.7 1.6 3.5E-05 47.3 17.2 20 204-223 197-216 (569)
5 PF06160 EzrA: Septation ring 93.2 3.5 7.6E-05 44.7 16.3 20 204-223 193-212 (560)
6 TIGR00606 rad50 rad50. This fa 91.4 9.5 0.00021 45.5 18.3 65 334-398 972-1041(1311)
7 PRK03918 chromosome segregatio 89.5 25 0.00054 39.7 18.9 38 305-342 343-382 (880)
8 PRK11637 AmiB activator; Provi 87.7 23 0.00049 36.9 15.9 16 206-221 48-63 (428)
9 PF04582 Reo_sigmaC: Reovirus 87.4 0.96 2.1E-05 45.7 5.2 63 336-398 88-153 (326)
10 PF00261 Tropomyosin: Tropomyo 87.4 3 6.5E-05 40.1 8.5 115 256-373 35-161 (237)
11 PRK04863 mukB cell division pr 85.5 98 0.0021 37.8 22.4 25 82-106 780-804 (1486)
12 TIGR03007 pepcterm_ChnLen poly 84.0 61 0.0013 34.2 20.5 72 204-291 217-294 (498)
13 PRK04778 septation ring format 83.6 71 0.0015 34.7 18.0 144 204-373 255-431 (569)
14 PF10046 BLOC1_2: Biogenesis o 83.5 13 0.00029 30.9 9.6 57 337-397 40-99 (99)
15 PF14712 Snapin_Pallidin: Snap 82.2 21 0.00046 28.9 10.1 58 342-399 17-92 (92)
16 PF06705 SF-assemblin: SF-asse 81.8 47 0.001 32.0 14.0 62 273-340 6-67 (247)
17 COG4942 Membrane-bound metallo 80.9 79 0.0017 33.3 17.7 132 254-392 63-245 (420)
18 PF04912 Dynamitin: Dynamitin 80.4 59 0.0013 33.5 15.0 138 254-398 206-381 (388)
19 COG1196 Smc Chromosome segrega 80.0 22 0.00048 42.0 13.0 19 206-224 668-686 (1163)
20 PF13514 AAA_27: AAA domain 79.1 1.4E+02 0.0031 35.2 20.2 40 335-374 892-931 (1111)
21 PRK04863 mukB cell division pr 79.0 1.7E+02 0.0036 35.9 23.2 144 253-398 438-599 (1486)
22 TIGR02168 SMC_prok_B chromosom 77.9 1.3E+02 0.0029 34.5 18.4 23 84-106 673-695 (1179)
23 PF05739 SNARE: SNARE domain; 77.2 27 0.00059 25.9 9.3 55 338-392 3-57 (63)
24 PF07889 DUF1664: Protein of u 77.0 29 0.00064 30.5 9.8 58 341-398 63-123 (126)
25 PRK02224 chromosome segregatio 76.3 1.4E+02 0.0031 33.8 22.3 40 333-373 573-612 (880)
26 KOG0996|consensus 76.0 29 0.00064 40.7 11.9 42 252-293 829-879 (1293)
27 PRK11637 AmiB activator; Provi 75.1 1.1E+02 0.0024 31.9 16.9 27 347-373 199-225 (428)
28 PF08657 DASH_Spc34: DASH comp 73.1 22 0.00048 35.0 9.0 87 309-398 159-259 (259)
29 PRK03918 chromosome segregatio 72.9 76 0.0017 35.9 14.5 14 208-221 172-185 (880)
30 COG4942 Membrane-bound metallo 72.5 43 0.00093 35.2 11.3 77 322-398 28-107 (420)
31 COG1382 GimC Prefoldin, chaper 72.2 62 0.0013 28.3 10.5 44 325-368 6-49 (119)
32 PRK11281 hypothetical protein; 71.2 2.3E+02 0.0049 33.8 20.4 50 325-374 278-327 (1113)
33 smart00787 Spc7 Spc7 kinetocho 71.0 83 0.0018 31.8 12.7 121 255-398 156-284 (312)
34 PF05667 DUF812: Protein of un 70.9 1.7E+02 0.0037 32.3 22.7 167 211-398 393-591 (594)
35 PF08614 ATG16: Autophagy prot 70.9 67 0.0014 29.8 11.4 59 340-398 131-193 (194)
36 KOG0996|consensus 70.5 1.1E+02 0.0023 36.3 14.6 41 254-295 264-304 (1293)
37 COG1196 Smc Chromosome segrega 69.5 2.4E+02 0.0053 33.4 20.7 36 340-375 871-906 (1163)
38 KOG2196|consensus 68.4 60 0.0013 31.7 10.5 66 334-399 166-247 (254)
39 TIGR02338 gimC_beta prefoldin, 68.2 72 0.0016 26.9 10.1 68 330-397 8-93 (110)
40 PF12761 End3: Actin cytoskele 67.9 7.4 0.00016 36.7 4.2 21 91-111 99-119 (195)
41 PF12252 SidE: Dot/Icm substra 67.8 1.4E+02 0.0031 35.0 14.7 69 196-288 1094-1176(1439)
42 TIGR02168 SMC_prok_B chromosom 66.6 90 0.0019 35.9 13.5 12 208-219 680-691 (1179)
43 PF10168 Nup88: Nuclear pore c 66.2 1.5E+02 0.0032 33.5 14.6 62 337-398 591-659 (717)
44 cd00193 t_SNARE Soluble NSF (N 65.4 48 0.001 23.8 8.6 53 338-390 5-57 (60)
45 cd09238 V_Alix_like_1 Protein- 64.2 88 0.0019 31.7 11.5 82 275-375 191-273 (339)
46 TIGR02132 phaR_Bmeg polyhydrox 63.9 63 0.0014 30.2 9.3 60 338-397 71-133 (189)
47 PF07926 TPR_MLP1_2: TPR/MLP1/ 63.9 66 0.0014 28.0 9.3 42 357-398 77-118 (132)
48 TIGR02169 SMC_prok_A chromosom 63.0 1.1E+02 0.0024 35.4 13.4 9 209-217 685-693 (1164)
49 PRK02224 chromosome segregatio 62.8 2.7E+02 0.0059 31.6 22.1 18 304-321 569-586 (880)
50 COG1340 Uncharacterized archae 62.8 1.4E+02 0.003 30.1 12.1 137 207-375 109-250 (294)
51 PF10805 DUF2730: Protein of u 62.0 35 0.00076 28.8 6.9 23 204-226 41-63 (106)
52 PF04899 MbeD_MobD: MbeD/MobD 61.9 71 0.0015 25.3 8.1 52 346-397 7-61 (70)
53 PRK15365 type III secretion sy 61.7 91 0.002 26.4 9.0 65 334-398 11-93 (107)
54 TIGR02680 conserved hypothetic 61.3 3.7E+02 0.0081 32.6 18.1 22 203-224 740-761 (1353)
55 PF07106 TBPIP: Tat binding pr 59.6 58 0.0013 29.4 8.4 23 376-398 114-136 (169)
56 COG1579 Zn-ribbon protein, pos 59.5 1.8E+02 0.0039 28.4 13.4 49 346-394 110-158 (239)
57 cd09234 V_HD-PTP_like Protein- 59.5 1.5E+02 0.0033 29.9 12.3 83 273-373 185-268 (337)
58 PF12325 TMF_TATA_bd: TATA ele 59.2 1.2E+02 0.0026 26.4 11.2 75 322-397 12-87 (120)
59 PF06008 Laminin_I: Laminin Do 59.0 1.6E+02 0.0035 28.5 12.0 141 252-397 19-197 (264)
60 PF12128 DUF3584: Protein of u 59.0 1.5E+02 0.0033 35.3 13.7 61 304-364 324-384 (1201)
61 TIGR02680 conserved hypothetic 58.3 3.4E+02 0.0074 32.9 16.6 39 358-396 901-939 (1353)
62 PRK01156 chromosome segregatio 55.9 3.6E+02 0.0078 30.8 16.5 15 208-222 419-433 (895)
63 KOG0994|consensus 55.8 4.4E+02 0.0095 31.7 20.4 17 155-171 1470-1486(1758)
64 COG1579 Zn-ribbon protein, pos 55.4 1.8E+02 0.004 28.3 11.4 63 335-397 106-168 (239)
65 PRK14011 prefoldin subunit alp 55.4 1.4E+02 0.0031 26.8 9.9 39 330-368 8-46 (144)
66 KOG0994|consensus 55.3 1.3E+02 0.0028 35.9 11.5 65 309-378 1283-1348(1758)
67 KOG0963|consensus 54.6 2.8E+02 0.0061 30.7 13.6 23 89-111 16-38 (629)
68 PHA02562 46 endonuclease subun 54.4 2.9E+02 0.0064 29.3 15.2 28 340-367 307-334 (562)
69 KOG0963|consensus 54.4 2.6E+02 0.0056 31.0 13.3 87 273-369 60-158 (629)
70 PF15070 GOLGA2L5: Putative go 53.9 3.5E+02 0.0076 30.0 17.1 105 202-340 47-151 (617)
71 TIGR01005 eps_transp_fam exopo 53.6 3.6E+02 0.0079 30.1 15.3 181 86-348 199-395 (754)
72 PRK10884 SH3 domain-containing 53.2 1.9E+02 0.0042 27.4 11.0 76 322-397 86-165 (206)
73 cd00632 Prefoldin_beta Prefold 52.5 1.4E+02 0.0029 24.9 9.6 28 337-364 11-38 (105)
74 PF07445 priB_priC: Primosomal 52.4 1.8E+02 0.0039 26.8 10.4 124 247-376 34-168 (173)
75 PF10241 KxDL: Uncharacterized 52.2 1.2E+02 0.0027 24.6 8.4 20 376-395 62-81 (88)
76 PF06160 EzrA: Septation ring 51.7 3E+02 0.0064 30.0 13.6 21 205-225 75-95 (560)
77 PF10158 LOH1CR12: Tumour supp 50.5 1.8E+02 0.0039 25.7 10.2 19 315-333 20-38 (131)
78 KOG2629|consensus 50.5 79 0.0017 31.7 8.1 63 335-397 125-187 (300)
79 KOG4057|consensus 50.2 1.3E+02 0.0028 27.5 8.6 57 325-381 5-68 (180)
80 PF04156 IncA: IncA protein; 49.3 1.9E+02 0.0042 26.2 10.2 34 258-292 82-115 (191)
81 KOG0933|consensus 49.0 4E+02 0.0087 31.4 14.1 129 249-395 666-797 (1174)
82 TIGR02338 gimC_beta prefoldin, 47.8 1.7E+02 0.0036 24.6 10.8 23 272-294 3-25 (110)
83 PF04380 BMFP: Membrane fusoge 47.8 1.4E+02 0.0031 23.8 8.4 58 341-398 12-77 (79)
84 PF09755 DUF2046: Uncharacteri 47.7 3.2E+02 0.0069 27.8 14.2 89 256-345 26-129 (310)
85 PF10147 CR6_interact: Growth 47.7 1.5E+02 0.0033 28.5 9.3 83 308-397 64-147 (217)
86 PF06320 GCN5L1: GCN5-like pro 47.1 1.8E+02 0.0038 25.3 9.0 59 336-395 44-102 (121)
87 PF10267 Tmemb_cc2: Predicted 47.0 2.1E+02 0.0045 30.0 11.0 55 337-391 242-318 (395)
88 cd07627 BAR_Vps5p The Bin/Amph 46.7 2.5E+02 0.0055 26.3 13.8 155 203-390 9-180 (216)
89 PRK13182 racA polar chromosome 46.6 1E+02 0.0022 28.5 7.9 53 346-398 85-145 (175)
90 PF09744 Jnk-SapK_ap_N: JNK_SA 46.3 2.3E+02 0.0051 25.8 10.2 75 322-396 26-107 (158)
91 PF11932 DUF3450: Protein of u 46.3 2.1E+02 0.0045 27.5 10.4 47 342-388 73-119 (251)
92 PHA02562 46 endonuclease subun 46.1 3.9E+02 0.0085 28.4 18.0 16 206-221 263-278 (562)
93 PF00038 Filament: Intermediat 45.7 2.5E+02 0.0053 27.6 11.1 64 334-397 211-274 (312)
94 smart00502 BBC B-Box C-termina 44.7 1.7E+02 0.0038 23.9 9.3 26 351-376 77-102 (127)
95 PF02994 Transposase_22: L1 tr 44.6 17 0.00037 37.4 2.7 50 343-396 141-190 (370)
96 KOG0976|consensus 44.4 5.6E+02 0.012 29.7 16.2 114 253-374 266-379 (1265)
97 PF08702 Fib_alpha: Fibrinogen 43.7 2.4E+02 0.0052 25.2 9.6 29 370-398 96-124 (146)
98 PF12718 Tropomyosin_1: Tropom 43.5 2.4E+02 0.0052 25.1 13.9 68 327-394 54-124 (143)
99 KOG0995|consensus 43.4 4.9E+02 0.011 28.7 16.9 57 82-138 260-322 (581)
100 TIGR00237 xseA exodeoxyribonuc 43.0 3.2E+02 0.007 28.7 11.9 99 194-321 244-343 (432)
101 PF05667 DUF812: Protein of un 42.9 5E+02 0.011 28.7 15.0 62 312-374 410-475 (594)
102 KOG0964|consensus 42.8 5E+02 0.011 30.6 13.6 73 322-394 956-1036(1200)
103 KOG0250|consensus 42.2 2.8E+02 0.0061 32.7 11.9 159 203-383 307-480 (1074)
104 COG3883 Uncharacterized protei 42.2 3.6E+02 0.0078 26.8 15.4 82 255-340 57-145 (265)
105 PF10157 DUF2365: Uncharacteri 42.1 2.6E+02 0.0057 25.2 10.0 28 322-351 44-71 (149)
106 PF10498 IFT57: Intra-flagella 42.0 2.8E+02 0.006 28.6 11.0 66 332-397 280-354 (359)
107 PF04582 Reo_sigmaC: Reovirus 41.4 66 0.0014 32.8 6.2 123 253-394 31-156 (326)
108 PF04880 NUDE_C: NUDE protein, 41.4 4.1 8.9E-05 37.5 -2.1 23 82-104 25-47 (166)
109 KOG2196|consensus 41.3 2.7E+02 0.0057 27.4 9.9 82 304-397 110-204 (254)
110 KOG0978|consensus 41.2 5.8E+02 0.012 28.9 15.1 117 282-398 499-621 (698)
111 PF03902 Gal4_dimer: Gal4-like 41.1 29 0.00063 26.4 2.7 19 205-223 3-21 (57)
112 TIGR00153 conserved hypothetic 41.0 3.1E+02 0.0066 25.6 11.6 45 249-293 10-64 (216)
113 cd07648 F-BAR_FCHO The F-BAR ( 40.9 2.8E+02 0.006 26.7 10.3 19 274-292 7-25 (261)
114 PRK09039 hypothetical protein; 40.8 4.1E+02 0.0089 27.1 13.9 39 255-293 51-95 (343)
115 PF08385 DHC_N1: Dynein heavy 39.9 1.6E+02 0.0035 31.3 9.4 74 324-397 226-317 (579)
116 cd00584 Prefoldin_alpha Prefol 39.7 1.1E+02 0.0024 26.2 6.6 36 334-369 8-43 (129)
117 PF04420 CHD5: CHD5-like prote 39.6 68 0.0015 29.1 5.5 25 86-110 38-62 (161)
118 COG3165 Uncharacterized protei 39.5 95 0.0021 29.6 6.5 48 351-398 150-199 (204)
119 PRK10869 recombination and rep 39.3 5.4E+02 0.012 28.0 20.7 125 254-378 241-373 (553)
120 PF05791 Bacillus_HBL: Bacillu 39.2 2.8E+02 0.0062 25.5 9.7 88 304-397 84-175 (184)
121 COG4913 Uncharacterized protei 39.1 6.5E+02 0.014 28.9 14.4 101 272-373 783-887 (1104)
122 TIGR00634 recN DNA repair prot 39.0 5.3E+02 0.012 27.9 15.6 106 255-364 166-291 (563)
123 PF15458 NTR2: Nineteen comple 38.9 83 0.0018 30.7 6.3 62 308-369 187-252 (254)
124 PRK09343 prefoldin subunit bet 38.7 2.6E+02 0.0056 24.1 10.1 36 331-366 13-48 (121)
125 PF09177 Syntaxin-6_N: Syntaxi 38.4 1.8E+02 0.0039 23.8 7.4 54 344-397 37-96 (97)
126 PF12086 DUF3563: Protein of u 38.4 25 0.00054 27.0 2.0 21 199-219 25-45 (59)
127 PF10046 BLOC1_2: Biogenesis o 37.9 1.8E+02 0.0039 24.1 7.4 47 331-377 51-97 (99)
128 cd07607 BAR_SH3P_plant The Bin 37.6 59 0.0013 30.7 4.7 50 84-138 105-157 (209)
129 PF01442 Apolipoprotein: Apoli 37.3 2.9E+02 0.0062 24.2 13.4 20 206-225 6-25 (202)
130 PRK04325 hypothetical protein; 36.1 2.2E+02 0.0047 22.5 7.4 35 341-375 4-38 (74)
131 TIGR00634 recN DNA repair prot 36.0 5.9E+02 0.013 27.5 24.4 118 255-372 249-372 (563)
132 KOG0250|consensus 36.0 7.6E+02 0.016 29.3 14.0 14 125-138 160-173 (1074)
133 PF06120 Phage_HK97_TLTM: Tail 35.7 1.4E+02 0.003 30.2 7.4 55 338-398 47-101 (301)
134 PF05010 TACC: Transforming ac 35.7 4E+02 0.0086 25.4 10.3 58 340-397 77-137 (207)
135 PRK01156 chromosome segregatio 35.6 4.1E+02 0.009 30.3 12.2 9 255-263 527-535 (895)
136 PF15619 Lebercilin: Ciliary p 35.1 3.9E+02 0.0084 25.1 10.3 82 316-397 49-144 (194)
137 PRK00286 xseA exodeoxyribonucl 34.4 4.7E+02 0.01 27.2 11.5 29 194-222 249-277 (438)
138 KOG0964|consensus 34.0 4.8E+02 0.011 30.7 11.8 95 273-374 672-769 (1200)
139 PF10805 DUF2730: Protein of u 34.0 2.9E+02 0.0062 23.3 8.4 39 335-373 38-78 (106)
140 COG4477 EzrA Negative regulato 33.9 6.7E+02 0.014 27.5 20.6 110 204-333 196-323 (570)
141 PF05266 DUF724: Protein of un 33.8 4E+02 0.0087 24.9 11.8 57 304-368 90-146 (190)
142 PF10191 COG7: Golgi complex c 33.2 7.3E+02 0.016 28.2 13.4 60 336-395 95-161 (766)
143 PF10212 TTKRSYEDQ: Predicted 33.2 4.1E+02 0.0088 28.9 10.7 62 336-397 438-513 (518)
144 cd07588 BAR_Amphiphysin The Bi 33.1 3.4E+02 0.0073 25.9 9.3 32 365-396 81-112 (211)
145 PF06825 HSBP1: Heat shock fac 33.0 1.3E+02 0.0028 22.7 5.1 33 365-397 8-40 (54)
146 COG5185 HEC1 Protein involved 32.7 3.3E+02 0.0071 29.4 9.7 65 334-398 283-357 (622)
147 KOG0804|consensus 32.4 6.6E+02 0.014 27.0 13.1 63 335-397 385-447 (493)
148 PTZ00446 vacuolar sorting prot 31.8 4.4E+02 0.0096 24.8 12.2 19 252-270 22-40 (191)
149 PF04111 APG6: Autophagy prote 31.7 5.2E+02 0.011 26.0 10.9 42 332-373 50-91 (314)
150 PF10779 XhlA: Haemolysin XhlA 31.5 2.5E+02 0.0054 21.8 7.1 38 337-374 11-48 (71)
151 PF07544 Med9: RNA polymerase 31.4 2.8E+02 0.006 22.3 7.8 52 323-374 4-66 (83)
152 COG0497 RecN ATPase involved i 31.4 7.4E+02 0.016 27.3 13.8 39 255-297 278-318 (557)
153 COG5509 Uncharacterized small 31.1 46 0.00099 25.7 2.4 25 86-110 30-54 (65)
154 PF10168 Nup88: Nuclear pore c 31.0 4.4E+02 0.0096 29.8 11.2 57 341-397 560-619 (717)
155 COG0497 RecN ATPase involved i 30.5 7.7E+02 0.017 27.1 16.9 156 204-374 207-370 (557)
156 PF08317 Spc7: Spc7 kinetochor 30.5 5.3E+02 0.012 25.9 10.8 12 386-397 277-288 (325)
157 KOG2391|consensus 30.0 3.3E+02 0.0072 28.1 9.0 53 337-389 223-278 (365)
158 PRK10929 putative mechanosensi 30.0 5.7E+02 0.012 30.6 12.1 139 257-398 45-228 (1109)
159 PHA03332 membrane glycoprotein 29.7 1.9E+02 0.0042 34.0 7.9 52 344-395 896-947 (1328)
160 PRK09239 chorismate mutase; Pr 29.6 2.2E+02 0.0047 24.0 6.6 84 253-343 6-91 (104)
161 PRK10803 tol-pal system protei 29.4 1.3E+02 0.0028 29.4 6.0 59 209-291 37-101 (263)
162 PF00261 Tropomyosin: Tropomyo 29.4 5.1E+02 0.011 24.7 15.2 19 274-292 38-56 (237)
163 PF11932 DUF3450: Protein of u 29.3 5.2E+02 0.011 24.8 10.6 56 337-392 61-116 (251)
164 PF05377 FlaC_arch: Flagella a 29.1 1.8E+02 0.0038 22.1 5.2 13 347-359 15-27 (55)
165 PF00429 TLV_coat: ENV polypro 29.1 1.2E+02 0.0025 33.3 6.1 70 328-397 423-507 (561)
166 KOG2211|consensus 29.0 8.1E+02 0.018 27.7 12.2 20 251-270 69-88 (797)
167 TIGR00606 rad50 rad50. This fa 29.0 1.1E+03 0.024 28.5 23.0 55 343-397 931-996 (1311)
168 cd00632 Prefoldin_beta Prefold 28.9 3.3E+02 0.0072 22.5 11.5 16 279-294 6-21 (105)
169 PRK09343 prefoldin subunit bet 28.8 3.8E+02 0.0082 23.1 8.4 25 346-370 85-109 (121)
170 PF08317 Spc7: Spc7 kinetochor 28.7 6.1E+02 0.013 25.4 13.9 131 255-393 161-291 (325)
171 cd00890 Prefoldin Prefoldin is 28.6 3.5E+02 0.0076 22.6 10.3 36 333-368 7-42 (129)
172 PF15397 DUF4618: Domain of un 28.5 5.9E+02 0.013 25.2 13.4 144 204-373 80-227 (258)
173 PF12718 Tropomyosin_1: Tropom 28.1 4.3E+02 0.0093 23.5 11.2 104 258-377 36-139 (143)
174 smart00340 HALZ homeobox assoc 28.0 44 0.00096 24.0 1.8 19 84-102 15-33 (44)
175 TIGR02132 phaR_Bmeg polyhydrox 28.0 2.5E+02 0.0054 26.4 7.1 41 357-397 76-126 (189)
176 PF09388 SpoOE-like: Spo0E lik 27.7 95 0.0021 22.0 3.5 17 121-137 22-38 (45)
177 PF00435 Spectrin: Spectrin re 27.7 2.8E+02 0.0061 21.2 11.6 70 322-391 31-104 (105)
178 cd08915 V_Alix_like Protein-in 27.7 6.3E+02 0.014 25.3 13.8 85 276-375 190-276 (342)
179 cd09237 V_ScBro1_like Protein- 27.6 5.2E+02 0.011 26.2 10.3 86 274-374 196-282 (356)
180 PF07195 FliD_C: Flagellar hoo 27.6 2.9E+02 0.0064 26.3 8.0 47 345-398 192-238 (239)
181 PLN02939 transferase, transfer 27.5 9.4E+02 0.02 28.4 13.1 70 327-396 298-369 (977)
182 PRK14066 exodeoxyribonuclease 26.5 2.3E+02 0.0051 22.6 5.9 54 343-397 5-58 (75)
183 TIGR01795 CM_mono_cladeE monof 26.4 2.1E+02 0.0046 23.6 5.9 79 259-344 5-85 (94)
184 PF15397 DUF4618: Domain of un 26.4 3.2E+02 0.0069 27.0 8.0 36 362-397 65-100 (258)
185 PF12308 Noelin-1: Neurogenesi 26.3 2.7E+02 0.0059 23.6 6.4 27 330-356 38-64 (101)
186 PRK00888 ftsB cell division pr 26.3 1.3E+02 0.0028 25.4 4.7 49 332-380 27-75 (105)
187 COG3883 Uncharacterized protei 26.3 6.2E+02 0.013 25.1 10.0 57 334-394 40-96 (265)
188 PF03915 AIP3: Actin interacti 26.1 8.1E+02 0.017 26.0 12.5 65 304-372 217-287 (424)
189 PF01920 Prefoldin_2: Prefoldi 25.9 3.5E+02 0.0076 21.7 9.1 28 345-372 11-38 (106)
190 PF12128 DUF3584: Protein of u 25.7 1.2E+03 0.026 27.9 14.8 26 272-297 313-338 (1201)
191 PRK10869 recombination and rep 25.6 8.9E+02 0.019 26.3 14.1 109 255-365 162-287 (553)
192 PF09403 FadA: Adhesion protei 25.2 1.8E+02 0.0039 25.6 5.5 96 276-374 24-121 (126)
193 TIGR03513 GldL_gliding gliding 25.0 6.1E+02 0.013 24.2 10.3 79 310-391 106-192 (202)
194 cd09235 V_Alix Middle V-domain 24.9 7.1E+02 0.015 25.1 10.6 86 275-375 187-273 (339)
195 cd07663 BAR_SNX5 The Bin/Amphi 24.8 6.3E+02 0.014 24.3 15.6 151 204-392 29-182 (218)
196 PF04859 DUF641: Plant protein 24.7 1.9E+02 0.0042 25.6 5.6 18 347-364 95-112 (131)
197 PF05377 FlaC_arch: Flagella a 24.5 3.2E+02 0.0069 20.7 6.3 14 376-389 26-39 (55)
198 PF02520 DUF148: Domain of unk 24.1 2E+02 0.0043 24.1 5.5 64 255-318 34-97 (113)
199 PF01920 Prefoldin_2: Prefoldi 23.8 3.9E+02 0.0084 21.5 9.6 36 332-367 5-40 (106)
200 PF10280 Med11: Mediator compl 23.8 4.6E+02 0.01 22.4 8.4 12 329-340 3-14 (117)
201 PF13949 ALIX_LYPXL_bnd: ALIX 23.8 6.6E+02 0.014 24.2 12.7 88 274-375 139-226 (296)
202 cd09236 V_AnPalA_UmRIM20_like 23.8 7.8E+02 0.017 25.0 14.0 89 274-375 190-287 (353)
203 TIGR03185 DNA_S_dndD DNA sulfu 23.6 4.3E+02 0.0093 29.2 9.4 10 283-292 186-195 (650)
204 PF06103 DUF948: Bacterial pro 23.6 3.8E+02 0.0083 21.3 10.0 65 332-397 19-87 (90)
205 KOG0612|consensus 23.5 1.4E+03 0.03 27.8 17.1 17 86-102 470-486 (1317)
206 COG0216 PrfA Protein chain rel 23.5 8.4E+02 0.018 25.3 12.2 68 326-397 30-102 (363)
207 PF07926 TPR_MLP1_2: TPR/MLP1/ 23.3 4.9E+02 0.011 22.5 10.1 62 331-392 58-119 (132)
208 smart00397 t_SNARE Helical reg 23.1 2.9E+02 0.0063 19.8 9.7 50 338-387 11-60 (66)
209 TIGR01805 CM_mono_grmpos monof 23.0 2.9E+02 0.0063 21.8 6.0 73 261-342 3-78 (81)
210 PF12041 DELLA: Transcriptiona 22.9 2E+02 0.0044 23.0 4.8 48 204-262 13-60 (73)
211 PRK06798 fliD flagellar cappin 22.7 2.7E+02 0.0058 29.4 7.3 65 326-390 358-423 (440)
212 PF06305 DUF1049: Protein of u 22.5 96 0.0021 23.3 2.9 21 86-106 46-66 (68)
213 PF04420 CHD5: CHD5-like prote 22.3 69 0.0015 29.0 2.4 24 87-110 65-88 (161)
214 COG1730 GIM5 Predicted prefold 22.2 5.8E+02 0.013 23.0 10.0 37 332-368 13-49 (145)
215 COG1340 Uncharacterized archae 22.1 8.2E+02 0.018 24.7 14.2 134 251-397 108-247 (294)
216 PRK14064 exodeoxyribonuclease 22.0 3E+02 0.0066 21.9 5.8 54 343-397 7-60 (75)
217 PRK01203 prefoldin subunit alp 21.9 2.8E+02 0.006 24.6 6.0 66 332-397 7-106 (130)
218 PRK06285 chorismate mutase; Pr 21.9 4.5E+02 0.0097 21.5 8.1 83 254-343 4-88 (96)
219 COG1422 Predicted membrane pro 21.8 1.6E+02 0.0034 28.1 4.7 24 87-110 71-94 (201)
220 PF07851 TMPIT: TMPIT-like pro 21.7 7.7E+02 0.017 25.3 10.0 45 335-379 14-58 (330)
221 PRK14066 exodeoxyribonuclease 21.7 1.2E+02 0.0027 24.2 3.5 54 209-286 5-60 (75)
222 PF04156 IncA: IncA protein; 21.4 6.1E+02 0.013 22.9 9.8 56 342-397 126-184 (191)
223 PRK00286 xseA exodeoxyribonucl 21.3 9.3E+02 0.02 25.0 14.2 29 370-398 364-392 (438)
224 PF08700 Vps51: Vps51/Vps67; 21.2 4E+02 0.0088 20.7 8.5 48 351-398 35-85 (87)
225 PF08614 ATG16: Autophagy prot 21.1 5.5E+02 0.012 23.7 8.3 47 347-397 124-170 (194)
226 PF02388 FemAB: FemAB family; 21.1 2.5E+02 0.0055 29.1 6.6 51 345-396 241-291 (406)
227 PF03233 Cauli_AT: Aphid trans 21.0 4.3E+02 0.0093 24.4 7.2 19 379-397 136-154 (163)
228 KOG0219|consensus 21.0 3.2E+02 0.0069 31.4 7.5 85 303-398 385-479 (902)
229 KOG1853|consensus 21.0 5.1E+02 0.011 25.8 8.1 59 339-397 13-71 (333)
230 PF02994 Transposase_22: L1 tr 20.9 3.6E+02 0.0079 27.8 7.6 45 327-374 142-186 (370)
231 PF02183 HALZ: Homeobox associ 20.8 91 0.002 22.5 2.3 24 85-108 16-39 (45)
232 PF02609 Exonuc_VII_S: Exonucl 20.7 3.4E+02 0.0075 19.7 6.9 52 344-396 1-52 (53)
233 PF04012 PspA_IM30: PspA/IM30 20.7 6.9E+02 0.015 23.2 10.0 46 327-372 2-49 (221)
234 PF06705 SF-assemblin: SF-asse 20.6 7.5E+02 0.016 23.6 13.3 76 202-293 31-106 (247)
235 PF14942 Muted: Organelle biog 20.5 6.3E+02 0.014 22.7 10.4 35 358-392 102-143 (145)
236 PRK07248 hypothetical protein; 20.4 4.5E+02 0.0097 21.0 7.1 77 259-344 3-82 (87)
237 COG2960 Uncharacterized protei 20.2 87 0.0019 26.6 2.4 35 188-222 56-90 (103)
No 1
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=100.00 E-value=4.3e-76 Score=598.82 Aligned_cols=356 Identities=34% Similarity=0.526 Sum_probs=322.0
Q ss_pred ccccCCCCCccccCCCHHhHHhhccCCcccCCCCccccccccccccCccccCCceeeccCC--CCCCHHHHHHHHHHHHH
Q psy9591 21 SMMTRTSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EKETPLQKYQRLQCELK 98 (399)
Q Consensus 21 ~~~e~~s~~Ie~~~l~~~~Ar~kF~~~~vda~~vDFSD~I~~kr~~gY~~~sg~~ei~g~~--~~ET~~qKl~RL~rEve 98 (399)
+.+++.|++|++.+|+|++||+||+|+.||+++|||||||++|||+||++.+++||++|++ ++|||+|||+||+|||+
T Consensus 25 ~~~~~~~~~I~~~~l~~~~A~~kF~~~~vda~~vDFSd~i~~krr~~~~~~~~~~e~~g~~~~e~Es~~~kl~RL~~Ev~ 104 (388)
T PF04912_consen 25 DDDEDESEDIERSRLNPDEARSKFKGARVDARGVDFSDRISKKRRSGYRSRSGEYEILGDDSSEKESPEQKLQRLRREVE 104 (388)
T ss_pred CCccccccchhhcCCCHHHHHHHhCcCcCCCCCCCchhhcccccccccccCCCceeecCCCCCCcCCHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999999999999999988999999995 89999999999999999
Q ss_pred HHHHHHHhhccccccccchhhcCCH----HHHHHHHHHHHhhhcccccCccccccccchhHHHHHHHHHhhhhhccCCCC
Q psy9591 99 ELMDEVSQIKEPAENSASDKAKLSV----QQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFALSNSK 174 (399)
Q Consensus 99 EL~eE~~~~k~~~~~~~~~~~~~~~----~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~~k~l~~ql~~~~~~~~~ 174 (399)
||++||+++++...... ++.+++ .++..|+++|+.|+++..+|+..+...++|++.+.++|+.+++.|+...+.
T Consensus 105 EL~eEl~~~~~~~~~~~--~e~~~~~~l~~~~~~L~~~L~~l~l~~~lg~~~~~~~~~~~~~~~~kl~~~l~~~k~~~~~ 182 (388)
T PF04912_consen 105 ELKEELEKRKADSKESD--EEKISPEELAQQLEELSKQLDSLKLEELLGEETAQDLSDPQKALSKKLLSQLESFKSSSGA 182 (388)
T ss_pred HHHHHHHHHhhcccccc--cccCChhhHHHHHHHHHHHHHHhhcccccchhhhcccccchhhHHHHHHHhhhhccccccc
Confidence 99999999987653222 233333 389999999999999998888777777889999999999999999744321
Q ss_pred CCCCCCCCCCCCccceecccchhHHHhhhhhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCC
Q psy9591 175 TPSSKGGVGSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNS 254 (399)
Q Consensus 175 ~~~~~~~~~~~~~vtye~~~~~~~~~~~~~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~ 254 (399)
...+..++.|||++||+|++.++.+++++|+||+||+.||++||+++ ++++.++ . +..+.|
T Consensus 183 ----~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~--~~~~~l~---~----------~~~~~~ 243 (388)
T PF04912_consen 183 ----GSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGIDS--DKMSSLD---S----------DTSSSP 243 (388)
T ss_pred ----CCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCCCc--ccccccc---c----------cCCcch
Confidence 11234567899999999999999999999999999999999999966 5577776 2 346899
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC--CCCchHHHHHH
Q psy9591 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS--ALVPRTLERLI 332 (399)
Q Consensus 255 L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~--~~LP~ll~RLr 332 (399)
|+++|+.|++|+++|++++||+|++||+.|++++++|++++... ..+.++++||++||++|++|++ ++||+||+||+
T Consensus 244 l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~-~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~ 322 (388)
T PF04912_consen 244 LLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEA-KEDAEQESKIDELYEILPRWDPYAPSLPSLVERLK 322 (388)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccc-cccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999877762 3678999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 333 ALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 333 sL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
+|+.||++|++|+++|.+|++.|.+|..++++|+++|++||++|.+|+++|++||+.||+||++|+
T Consensus 323 tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 323 TLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 2
>KOG3958|consensus
Probab=100.00 E-value=9.2e-65 Score=483.48 Aligned_cols=344 Identities=31% Similarity=0.500 Sum_probs=312.9
Q ss_pred CCCCCccccCCCCCccccCCCHHhHHhhccCCcccCCCCccccccccccccCccccCCceeeccCC--CCCCHHHHHHHH
Q psy9591 16 TRAPRSMMTRTSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQG--EKETPLQKYQRL 93 (399)
Q Consensus 16 ~~~~~~~~e~~s~~Ie~~~l~~~~Ar~kF~~~~vda~~vDFSD~I~~kr~~gY~~~sg~~ei~g~~--~~ET~~qKl~RL 93 (399)
|++.++.+++.+++|++++++|+.|+.||+++++...++||||||++++|+||...+++||++|.| .+|||.|||+||
T Consensus 20 q~~~~e~~e~t~~~ie~i~v~~~~a~kkfk~~~v~~~s~dfsD~i~k~~r~~y~~~s~~yEm~G~G~~~kETp~qK~qRl 99 (371)
T KOG3958|consen 20 QKSEPENDEPTHPDIELISVDPDEALKKFKNRVVNLTSSDFSDRIGKKRRHGYGNNSYVYEMLGEGLGVKETPQQKYQRL 99 (371)
T ss_pred hccccccCCCCCCCeeeeeechhHHHHHhhcceeccCcccchHHHHhhhhhccCCCcceeeeeccCcCcccCHHHHHHHH
Confidence 344555677889999999999999999999999999999999999999999999988999999999 699999999999
Q ss_pred HHHHHHHHHHHHhhccccccccchhhcCCHH----HHHHHHHHHHhhhcccccCccccccccchhHHHHHHHHHhhhhhc
Q psy9591 94 QCELKELMDEVSQIKEPAENSASDKAKLSVQ----QIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFA 169 (399)
Q Consensus 94 ~rEveEL~eE~~~~k~~~~~~~~~~~~~~~~----~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~~k~l~~ql~~~~ 169 (399)
.+||.||..|+++++... ....+++.++. ++..|.++|..+++++.+|+.. .|++.+.++++.|++.++
T Consensus 100 l~Ev~eL~~eve~ik~dk--~~a~Eek~t~~l~A~vla~lkk~l~al~leq~lGk~a-----tp~~~~vk~ll~q~E~~k 172 (371)
T KOG3958|consen 100 LHEVQELTTEVEKIKTDK--ESATEEKLTPVLLAKVLAALKKQLVALHLEQLLGKDA-----TPDGALVKRLLLQLEATK 172 (371)
T ss_pred HHHHHHHHHHHHHHhhch--hhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCcHHHHHHHHHHHHhhc
Confidence 999999999999999883 22234556664 8999999999999999999876 599999999999999988
Q ss_pred cCCCCCCCCCCCCCCCCccceecccchhHHHhhhhhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccC
Q psy9591 170 LSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFG 249 (399)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~vtye~~~~~~~~~~~~~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~ 249 (399)
.+.. . ++ .++|.+. |.+.+|+|+||+||.+||+.||... +++++|+ + +
T Consensus 173 ~sg~-~---t~------------~p~p~~d-~s~~akVA~LE~Rlt~lE~vvg~~~--d~~~~ls---a----------~ 220 (371)
T KOG3958|consen 173 NSGK-T---TG------------TPRPEQD-FSQAAKVAELEKRLTELETVVGCDQ--DAQNPLS---A----------G 220 (371)
T ss_pred ccCc-c---cC------------CCCCCcc-HHHHHHHHHHHHHHHHHHHHHcCCc--cccCchh---h----------c
Confidence 6532 1 11 1146665 8999999999999999999999998 7899998 3 4
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC--CCCchH
Q psy9591 250 GGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS--ALVPRT 327 (399)
Q Consensus 250 ~~~~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~--~~LP~l 327 (399)
..+.+++++|..|..++++|++..||.|++|++.++.++++|++++++ +..|.+.++||++||+++++|+| ..||++
T Consensus 221 ~~~a~vletVe~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~IaEk~~~-s~~Da~~d~KV~elye~~qrw~pi~stLP~~ 299 (371)
T KOG3958|consen 221 LQGACVLETVELLQAKVSALDLAVLDQVEQRLQSVLGKVNEIAEKHKA-SVEDADTDSKVHELYETIQRWSPIASTLPEL 299 (371)
T ss_pred cCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhhhhHHHHHHHHHhhhhHHHhhHHH
Confidence 577999999999999999999999999999999999999999987776 46889999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q psy9591 328 LERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALKK 399 (399)
Q Consensus 328 l~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~k 399 (399)
|+||++|+.||++|.+|++.|.+|++.|..|...++++.++|..||.+|++|+.+|+++|+.||+||++|+|
T Consensus 300 V~rl~al~~LHeqa~~Fa~~lthl~t~q~~i~~sl~~n~ell~~vqtt~~qnl~tV~~k~a~ie~rva~l~k 371 (371)
T KOG3958|consen 300 VQRLVALKQLHEQAMQFAQLLTHLDTTQQMIANSLKDNTELLTQVQTTMRQNLATVEGKFASIEERVAKLGK 371 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=97.54 E-value=0.0037 Score=57.74 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHHHHHHHh-CCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcCCCchhHHHHHHH
Q psy9591 204 AAKLTSLEQRLIKLENLL-GEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARIT 282 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~l-G~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~ 282 (399)
.+-+..||+||..||..| |.... . ...+.+++..|......|+=....+ .||+
T Consensus 4 ~~~l~~Le~Ri~~LE~~v~G~~~~-----------~----------~~~~~~v~~~L~~~~~~L~~~~s~r-----e~i~ 57 (174)
T PF07426_consen 4 MSALDILEKRIEELERRVYGENGS-----------K----------EGQPEKVIDSLLSVQSALNSAASKR-----ERIK 57 (174)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcc-----------c----------cCCchHHHHHHHHHHHHHHHHHccc-----HHHH
Confidence 456788999999999999 65431 0 1245678888887777776553332 4677
Q ss_pred HHHHHHHHHHHhcC-------CCCC--------CCchhHHHHHHHHHhhhhcCC-------CCCchHHHHHHHHHHHHHH
Q psy9591 283 HLSNKLDKIIEKAN-------SVDP--------KDSERDQRVNELYELSRSVDS-------ALVPRTLERLIALESLHAQ 340 (399)
Q Consensus 283 ~L~~ele~l~~kk~-------~~~~--------~~~~~~~KI~eLY~~l~~~~~-------~~LP~ll~RLrsL~~LH~~ 340 (399)
.+.++++.|.+-=- ..+. ...+.-.+..++++.+..++| ..+|..-++|..|..+|.+
T Consensus 58 ~l~k~~~eL~~YLDP~~~e~~~l~~~~K~~~ILa~e~~i~~~~~~Leki~~L~pvL~se~i~~vp~~~~kL~~L~~~~~~ 137 (174)
T PF07426_consen 58 ELFKRIEELNKYLDPNFIEEIQLPDSAKLQIILAEEDEIKSTAELLEKIKSLEPVLDSESIRNVPELCDKLQKLSQIHLE 137 (174)
T ss_pred HHHHHHHHHHHHcCchhhhhcccchHHHHHHHHHccHHHHHHHHHHHHHHHhhhhcCcHHHhhhHHHHHHHHHHHHHHHH
Confidence 77777777754100 0000 122444456667777777666 7899999999999999987
Q ss_pred HHHHHHH
Q psy9591 341 AGNFATL 347 (399)
Q Consensus 341 Aa~f~~~ 347 (399)
...-++.
T Consensus 138 Q~e~~~~ 144 (174)
T PF07426_consen 138 QQEESEE 144 (174)
T ss_pred HHHHHHH
Confidence 6654433
No 4
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.65 E-value=1.6 Score=47.31 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHHHhCC
Q psy9591 204 AAKLTSLEQRLIKLENLLGE 223 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~ 223 (399)
..-+..++..+..|+..+-.
T Consensus 197 ~e~l~~l~~~~~~l~~~~~~ 216 (569)
T PRK04778 197 REILDQLEEELAALEQIMEE 216 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888887743
No 5
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.17 E-value=3.5 Score=44.70 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHhCC
Q psy9591 204 AAKLTSLEQRLIKLENLLGE 223 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~ 223 (399)
..-+..++..+..|+..+-.
T Consensus 193 ~eil~~l~~~~~~l~~~~e~ 212 (560)
T PF06160_consen 193 REILEKLKEETDELEEIMED 212 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888854
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.37 E-value=9.5 Score=45.50 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHH--HHHHHHHHHHHHhhc
Q psy9591 334 LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLE---GKMGSDVERI--KQDVKALDEKIKALK 398 (399)
Q Consensus 334 L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve---~~~~~N~~~v--~~nv~~Le~Ri~~L~ 398 (399)
|..+..+.......+..++..+..+...|+..+.-+...+ ..+..|+... +..+..++..|..|.
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~ 1041 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL 1041 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445578888899999999999988888877664 4688888888 888888888877663
No 7
>PRK03918 chromosome segregation protein; Provisional
Probab=89.49 E-value=25 Score=39.69 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhhhhcCC--CCCchHHHHHHHHHHHHHHHH
Q psy9591 305 RDQRVNELYELSRSVDS--ALVPRTLERLIALESLHAQAG 342 (399)
Q Consensus 305 ~~~KI~eLY~~l~~~~~--~~LP~ll~RLrsL~~LH~~Aa 342 (399)
...++.++....+.+.. ..+..+..+++.+..++....
T Consensus 343 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~l~~~l~ 382 (880)
T PRK03918 343 LKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLT 382 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555665555 555666666767766666544
No 8
>PRK11637 AmiB activator; Provisional
Probab=87.74 E-value=23 Score=36.92 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHh
Q psy9591 206 KLTSLEQRLIKLENLL 221 (399)
Q Consensus 206 ~ia~LE~RL~~LE~~l 221 (399)
++.++++.|..+++.+
T Consensus 48 ~l~~l~~qi~~~~~~i 63 (428)
T PRK11637 48 QLKSIQQDIAAKEKSV 63 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 9
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=87.44 E-value=0.96 Score=45.71 Aligned_cols=63 Identities=25% Similarity=0.401 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 336 SLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG---KMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 336 ~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~---~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
.++.....++..+..|-....+....|...+..+..++. +++..+....-+|.+||.||++|.
T Consensus 88 ~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 88 SLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 344445555555555555555555555555555555553 467777888888888888888875
No 10
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.36 E-value=3 Score=40.09 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhcCC------CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC------CC
Q psy9591 256 VENTDWLRAQINLIDA------AHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS------AL 323 (399)
Q Consensus 256 ~~~l~~L~~qlslL~~------~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~------~~ 323 (399)
-.-+..|.+++.+|.. ..|+.+..|+..+.+.++................+.||..|=..|..... .-
T Consensus 35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k 114 (237)
T PF00261_consen 35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERK 114 (237)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445568888888852 24455555555555555444332221000112344455544444443322 22
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 324 VPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLE 373 (399)
Q Consensus 324 LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve 373 (399)
+.-+-.||.. +......+-..+..++....++...|+.....|..+|
T Consensus 115 ~~E~~rkl~~---~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 115 YEEVERKLKV---LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp HHHCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh
Confidence 2233333333 3333333344444444444444444444444444443
No 11
>PRK04863 mukB cell division protein MukB; Provisional
Probab=85.49 E-value=98 Score=37.82 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Q psy9591 82 EKETPLQKYQRLQCELKELMDEVSQ 106 (399)
Q Consensus 82 ~~ET~~qKl~RL~rEveEL~eE~~~ 106 (399)
...-.++++..|+.|.+++.+.+++
T Consensus 780 gr~are~~~~~l~~~~~~~~~~~~~ 804 (1486)
T PRK04863 780 GRAAREKRIEQLRAEREELAERYAT 804 (1486)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999999999863
No 12
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=83.96 E-value=61 Score=34.16 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcC------CCchhHH
Q psy9591 204 AAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLID------AAHCDAY 277 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~------~~~Ld~i 277 (399)
-..++.++.++..|++.++..+. ... .. .+....++...+..|+.++..|. +|.+-.+
T Consensus 217 ~~~l~~~~a~~~~l~~~l~~~~~--~~~-~~-------------~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l 280 (498)
T TIGR03007 217 RLELNEAIAQRDALKRQLGGEEP--VLL-AG-------------SSVANSELDGRIEALEKQLDALRLRYTDKHPDVIAT 280 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC--CcC-cc-------------cccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence 44567888888888888876541 111 00 01234567777888888887764 3445555
Q ss_pred HHHHHHHHHHHHHH
Q psy9591 278 DARITHLSNKLDKI 291 (399)
Q Consensus 278 ~~Rl~~L~~ele~l 291 (399)
.+++..|...+.+.
T Consensus 281 ~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 281 KREIAQLEEQKEEE 294 (498)
T ss_pred HHHHHHHHHHHHhh
Confidence 56666555555443
No 13
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=83.64 E-value=71 Score=34.71 Aligned_cols=144 Identities=13% Similarity=0.236 Sum_probs=91.2
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcC-------------
Q psy9591 204 AAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLID------------- 270 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~------------- 270 (399)
...+..|..+|......||.-. +.. .-..++.|..+|..|.
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l~----l~~----------------------~~~~~~~i~~~Id~Lyd~lekE~~A~~~v 308 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEELD----LDE----------------------AEEKNEEIQERIDQLYDILEREVKARKYV 308 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC----hHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776654 332 3333444444444442
Q ss_pred -------CCchhHHHHHHHHHHHHHHHHHHhcCCCCC------CCchhHHHHHHHHH-hhhhcCC--CCCchHHHHHHH-
Q psy9591 271 -------AAHCDAYDARITHLSNKLDKIIEKANSVDP------KDSERDQRVNELYE-LSRSVDS--ALVPRTLERLIA- 333 (399)
Q Consensus 271 -------~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~------~~~~~~~KI~eLY~-~l~~~~~--~~LP~ll~RLrs- 333 (399)
+..|+.+......|..+++.|.....-... .-..+-..+.+-|. ....+.. ...-.+.+++..
T Consensus 309 ek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel 388 (569)
T PRK04778 309 EKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEI 388 (569)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 346777888888888888888764332100 01122333443343 3333433 335556666655
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 334 ---LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLE 373 (399)
Q Consensus 334 ---L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve 373 (399)
|..++.+-..+...|..|.+...+....++.|+..|..+.
T Consensus 389 ~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 389 LKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888999999999999999999999999999988776
No 14
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=83.48 E-value=13 Score=30.92 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 337 LHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG---KMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 337 LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~---~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
+...|.+....+..|++....+..-+++. +.+|+ .|...+..+..|.+.||.|+..|
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~I----d~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQQI----DQIEEQVTELEQTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34445566666666666665555554443 33333 37788899999999999999865
No 15
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=82.17 E-value=21 Score=28.86 Aligned_cols=58 Identities=16% Similarity=0.313 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhHHHHHHHHHHHHHHHHhhcC
Q psy9591 342 GNFATLLKELESVQVDLASNLTNNQSLLTSLEG------------------KMGSDVERIKQDVKALDEKIKALKK 399 (399)
Q Consensus 342 a~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~------------------~~~~N~~~v~~nv~~Le~Ri~~L~k 399 (399)
..+-..|.++-+.|..+...|+....-|..+.. +++..|..+...+..|..|+.+|.+
T Consensus 17 ~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~q 92 (92)
T PF14712_consen 17 DRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQQ 92 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344455555666666666555555544443322 3688888999999999999888864
No 16
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=81.78 E-value=47 Score=31.97 Aligned_cols=62 Identities=15% Similarity=0.284 Sum_probs=37.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHH
Q psy9591 273 HCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQ 340 (399)
Q Consensus 273 ~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~ 340 (399)
.|..|..|+..+..+|+.=...|.. ..++++..|++.+.+++..+---+-.|..+.+.|+..
T Consensus 6 KL~~i~e~~~~f~~~le~e~~~Rr~------~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~ 67 (247)
T PF06705_consen 6 KLASINERFSGFESDLENEKRQRRE------QEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSK 67 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777655544443 4556666666666666653334455555555555543
No 17
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.90 E-value=79 Score=33.32 Aligned_cols=132 Identities=22% Similarity=0.337 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHhhcC------CCchhHHHHHHHHHHHHHHHHHHhcC----------------C--CC------CCCc
Q psy9591 254 SLVENTDWLRAQINLID------AAHCDAYDARITHLSNKLDKIIEKAN----------------S--VD------PKDS 303 (399)
Q Consensus 254 ~L~~~l~~L~~qlslL~------~~~Ld~i~~Rl~~L~~ele~l~~kk~----------------~--~~------~~~~ 303 (399)
.|...|..++..++-|+ ...++.++++|..+...++.+...+. + .+ +.++
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda 142 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDA 142 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhh
Confidence 35555555555555554 34677777777777777766653221 1 01 1233
Q ss_pred hhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 304 ERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFAT-----------LLKELESVQVDLASNLTNNQSLLTSL 372 (399)
Q Consensus 304 ~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~-----------~L~~Le~~q~~l~~~l~~~~~~L~~v 372 (399)
.....+--+|..| .|...+|+.+|..--.+.+..-+ .+.+...++..+...+....+++..+
T Consensus 143 ~~~~R~ai~~~~l-------~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l 215 (420)
T COG4942 143 QRSVRLAIYYGAL-------NPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQL 215 (420)
T ss_pred hHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666654 47777777666544433333222 22333444444444444445555554
Q ss_pred HHH----------HHHhHHHHHHHHHHHHH
Q psy9591 373 EGK----------MGSDVERIKQDVKALDE 392 (399)
Q Consensus 373 e~~----------~~~N~~~v~~nv~~Le~ 392 (399)
+.. +..|...+..-|..+|.
T Consensus 216 ~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~ 245 (420)
T COG4942 216 NSELSADQKKLEELRANESRLKNEIASAEA 245 (420)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 432 55555555555555553
No 18
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=80.45 E-value=59 Score=33.54 Aligned_cols=138 Identities=17% Similarity=0.261 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHhhcC------C----------------CchhHHHHHHHHHHH-HHHHHHHhcCCCCCCCchhHHHHH
Q psy9591 254 SLVENTDWLRAQINLID------A----------------AHCDAYDARITHLSN-KLDKIIEKANSVDPKDSERDQRVN 310 (399)
Q Consensus 254 ~L~~~l~~L~~qlslL~------~----------------~~Ld~i~~Rl~~L~~-ele~l~~kk~~~~~~~~~~~~KI~ 310 (399)
.-+..+-.|++||+.|. + +.|+.+++||..|.. .++.+..+-.. -..|++
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~-------L~~~~~ 278 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKS-------LLSELE 278 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------HHHHHH
Confidence 34667778888888776 1 236667777777633 45555432221 112222
Q ss_pred HHHHhhhhc----CC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------
Q psy9591 311 ELYELSRSV----DS-ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNL---TNNQSLLTSLEGK------- 375 (399)
Q Consensus 311 eLY~~l~~~----~~-~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l---~~~~~~L~~ve~~------- 375 (399)
+|=+.-... +. .-|-.|.+-|..+..++...=....+|..|.....+...-. ...+.....|+..
T Consensus 279 ~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~ 358 (388)
T PF04912_consen 279 ELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEEL 358 (388)
T ss_pred HHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111111 22 56778888899999999888888888888887776554333 2233333334333
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 376 MGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 376 ~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
+..=-..+..|++.++..|+.|.
T Consensus 359 L~~ve~~~~~N~~~i~~n~~~le 381 (388)
T PF04912_consen 359 LNKVEEKFKENMETIEKNVKKLE 381 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222335667777777777663
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.04 E-value=22 Score=41.98 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHhCCC
Q psy9591 206 KLTSLEQRLIKLENLLGEH 224 (399)
Q Consensus 206 ~ia~LE~RL~~LE~~lG~~ 224 (399)
++..|+.+|..++..+...
T Consensus 668 ~l~~l~~~l~~~~~~~~~~ 686 (1163)
T COG1196 668 ELKELEEELAELEAQLEKL 686 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566777777777665443
No 20
>PF13514 AAA_27: AAA domain
Probab=79.10 E-value=1.4e+02 Score=35.16 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 335 ESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG 374 (399)
Q Consensus 335 ~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~ 374 (399)
..+-.........+..++....++...+...+.-|..++.
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444555555555555555555555555555555543
No 21
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.00 E-value=1.7e+02 Score=35.94 Aligned_cols=144 Identities=17% Similarity=0.122 Sum_probs=83.4
Q ss_pred CChHHHHHHHHHHHhhcCC------CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC--CCC
Q psy9591 253 NSLVENTDWLRAQINLIDA------AHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS--ALV 324 (399)
Q Consensus 253 ~~L~~~l~~L~~qlslL~~------~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~--~~L 324 (399)
..|...++....++.-+.. ..++..+..++.+.+.+..+...... ...+.-.....++...++.|.. ..+
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk--v~~~~a~~~~~~~~~~~~~~~~~~~~~ 515 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE--VSRSEAWDVARELLRRLREQRHLAEQL 515 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cCHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 3477777788887776631 23344444444444444444333332 2344555667788888888888 899
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHH
Q psy9591 325 PRTLERLIALESLHAQAGNFATLLKELESV-------QVDLASNLTNNQSLLTSLEG---KMGSDVERIKQDVKALDEKI 394 (399)
Q Consensus 325 P~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~-------q~~l~~~l~~~~~~L~~ve~---~~~~N~~~v~~nv~~Le~Ri 394 (399)
|.+=.+|..|+.=|..-......+.+..+. -..+......++..+..+++ ...+....+......|..+|
T Consensus 516 ~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i 595 (1486)
T PRK04863 516 QQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARI 595 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998444444444444444332 23333444445555544443 35555566666667777776
Q ss_pred Hhhc
Q psy9591 395 KALK 398 (399)
Q Consensus 395 ~~L~ 398 (399)
..|.
T Consensus 596 ~~l~ 599 (1486)
T PRK04863 596 QRLA 599 (1486)
T ss_pred HHHH
Confidence 6653
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=77.85 E-value=1.3e+02 Score=34.52 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Q psy9591 84 ETPLQKYQRLQCELKELMDEVSQ 106 (399)
Q Consensus 84 ET~~qKl~RL~rEveEL~eE~~~ 106 (399)
+.+..++..|+.++.++..++..
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~ 695 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAE 695 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666655543
No 23
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=77.17 E-value=27 Score=25.88 Aligned_cols=55 Identities=16% Similarity=0.344 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9591 338 HAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDE 392 (399)
Q Consensus 338 H~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~ 392 (399)
|.........+..|...-.+|...+....++|..++.+|......|..-.+.|..
T Consensus 3 d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 3 DEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566678888888889999999999999999999888877777777666654
No 24
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=76.96 E-value=29 Score=30.52 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 341 AGNFATLLKELESVQVDLASNLTNNQSLLTSLEG---KMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 341 Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~---~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
=.+++++|+.|+..+.++....+.-++-+..+.. .+..-++.|..-|..||.+|..+.
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777766666666666666654 377788888888889998888764
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=76.27 E-value=1.4e+02 Score=33.77 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 333 ALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLE 373 (399)
Q Consensus 333 sL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve 373 (399)
-+..+|....+....+..|+ ...++...+..|+.-+..++
T Consensus 573 ~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~ 612 (880)
T PRK02224 573 EVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLR 612 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666 35555555555555555444
No 26
>KOG0996|consensus
Probab=76.04 E-value=29 Score=40.66 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=28.2
Q ss_pred CCChHHHHHHHHHHHhhcCC---------CchhHHHHHHHHHHHHHHHHHH
Q psy9591 252 HNSLVENTDWLRAQINLIDA---------AHCDAYDARITHLSNKLDKIIE 293 (399)
Q Consensus 252 ~~~L~~~l~~L~~qlslL~~---------~~Ld~i~~Rl~~L~~ele~l~~ 293 (399)
.+.+.+.++.|.++|.-+.. ..|+-+...|..+-.+++.+.+
T Consensus 829 ~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe 879 (1293)
T KOG0996|consen 829 VKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQE 879 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888776651 2455556667777777777753
No 27
>PRK11637 AmiB activator; Provisional
Probab=75.13 E-value=1.1e+02 Score=31.85 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 347 LLKELESVQVDLASNLTNNQSLLTSLE 373 (399)
Q Consensus 347 ~L~~Le~~q~~l~~~l~~~~~~L~~ve 373 (399)
.+.+++..+.++....++-+..+..++
T Consensus 199 ~~~e~~~~k~~L~~~k~e~~~~l~~L~ 225 (428)
T PRK11637 199 LLYEQQAQQQKLEQARNERKKTLTGLE 225 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444333444443
No 28
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=73.14 E-value=22 Score=34.98 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=61.4
Q ss_pred HHHHHHhhhhcCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
Q psy9591 309 VNELYELSRSVDS-ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL-------------EG 374 (399)
Q Consensus 309 I~eLY~~l~~~~~-~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~v-------------e~ 374 (399)
|+-|+..+..+-. --+|...+|+.+|+.=|. +....+..||...++...+|+......... ..
T Consensus 159 vevLL~~ae~L~~vYP~~ga~eki~~Lr~~y~---~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~ 235 (259)
T PF08657_consen 159 VEVLLRGAEKLCNVYPLPGAREKIAALRQRYN---QLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSV 235 (259)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccch
Confidence 4555555555544 345799999988877774 566778888888888777777754433222 12
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 375 KMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 375 ~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
...+.+..=+..|+.||.++..|+
T Consensus 236 ~~de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 236 DTDEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC
Confidence 577888888899999999998874
No 29
>PRK03918 chromosome segregation protein; Provisional
Probab=72.92 E-value=76 Score=35.85 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHh
Q psy9591 208 TSLEQRLIKLENLL 221 (399)
Q Consensus 208 a~LE~RL~~LE~~l 221 (399)
-.++.++..|+..+
T Consensus 172 ~~~~~~~~~l~~~l 185 (880)
T PRK03918 172 KEIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 30
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.48 E-value=43 Score=35.23 Aligned_cols=77 Identities=16% Similarity=0.322 Sum_probs=61.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 322 ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK---MGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 322 ~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
+..|+.-.+=+-|+.+..+-+.+...+....+..+.+..+|+..++-+..++.. +..-+..++.++..++.++.+|.
T Consensus 28 ~~s~s~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 28 AAAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 334444444456788899999999999999999999999999999999999875 55667777888888888887764
No 31
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=72.20 E-value=62 Score=28.26 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 325 PRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSL 368 (399)
Q Consensus 325 P~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~ 368 (399)
|.+=.-+.-+..||.+...+......++....++...+...+.+
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l 49 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL 49 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555677789999999999999999999999988888777655
No 32
>PRK11281 hypothetical protein; Provisional
Probab=71.18 E-value=2.3e+02 Score=33.76 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 325 PRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG 374 (399)
Q Consensus 325 P~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~ 374 (399)
|-+-+=+..=+.|-..-.+..+.++.+.+.+..+.+.+++....+..+++
T Consensus 278 p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~e 327 (1113)
T PRK11281 278 PLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKE 327 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334556666677777888888888777777776666665543
No 33
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=71.00 E-value=83 Score=31.79 Aligned_cols=121 Identities=21% Similarity=0.272 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHH-H
Q psy9591 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLI-A 333 (399)
Q Consensus 255 L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLr-s 333 (399)
+..--..|..++.+|+ .-+..+..|...|..++..+.........-| |..+.++| .
T Consensus 156 l~~D~~~L~~~~~~l~-~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d----------------------~~eL~~lk~~ 212 (312)
T smart00787 156 LKEDYKLLMKELELLN-SIKPKLRDRKDALEEELRQLKQLEDELEDCD----------------------PTELDRAKEK 212 (312)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC----------------------HHHHHHHHHH
Confidence 3334444666666664 5566667777777777777754332211112 22333332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 334 LESLHAQAGNFATLLKELESVQVDLASNL-------TNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 334 L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l-------~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
|..++.+-..+...+.+++.+..++...| ..+++.+...|....++...=..-|..|-+++..|+
T Consensus 213 l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 213 LKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444 444444555555566666555666777777776664
No 34
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.94 E-value=1.7e+02 Score=32.26 Aligned_cols=167 Identities=15% Similarity=0.246 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH
Q psy9591 211 EQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDK 290 (399)
Q Consensus 211 E~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~ 290 (399)
|.-|.+|+..+..+. .++-.|..-. ..--.||...+..|..+.+.-.+.... .-.+|+.+..+++.
T Consensus 393 e~ni~kL~~~v~~s~--~rl~~L~~qW-----------e~~R~pL~~e~r~lk~~~~~~~~e~~~-~~~~ik~~r~~~k~ 458 (594)
T PF05667_consen 393 EENIAKLQALVEASE--QRLVELAQQW-----------EKHRAPLIEEYRRLKEKASNRESESKQ-KLQEIKELREEIKE 458 (594)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHH-----------HHHHhHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHH
Confidence 444566666665555 4555544211 123368888888888777755432221 22466777777777
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHhhhhcCC-CCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 291 IIEKANSVDPKDSERDQRVNELYELSRSVDS-ALVPRTLERLI-ALESLHAQAGNFATLLKELESVQVDLASNLTNNQSL 368 (399)
Q Consensus 291 l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~-~~LP~ll~RLr-sL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~ 368 (399)
+...-. ..+..+.+|..-+.++.. ..=..-+.|+- --..||-+=.+....|......|.+|...-.+.+..
T Consensus 459 ~~~e~~-------~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 459 IEEEIR-------QKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRT 531 (594)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 653221 123334444444444433 32333344432 234555566666666666666665555554444444
Q ss_pred HHHHHH------------------------H------HHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 369 LTSLEG------------------------K------MGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 369 L~~ve~------------------------~------~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
-..+++ . .-++...|...+.+||++|+...
T Consensus 532 F~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~ 591 (594)
T PF05667_consen 532 FTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDTES 591 (594)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 333332 1 33556677788889999987653
No 35
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=70.93 E-value=67 Score=29.81 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 340 QAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK----MGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 340 ~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~----~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
........|...+.....+..++...+--++.+|+. =.+|-+.|+.||..-..-.++++
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~mN 193 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAERMN 193 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444455555555555555555555555554 56899999999998877766654
No 36
>KOG0996|consensus
Probab=70.50 E-value=1.1e+02 Score=36.27 Aligned_cols=41 Identities=7% Similarity=0.115 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhc
Q psy9591 254 SLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKA 295 (399)
Q Consensus 254 ~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk 295 (399)
-..+-|..+.+||..|+ -+......|++....+.+.+...+
T Consensus 264 ry~~~I~~~~~rv~~L~-e~~sek~~~~k~~e~ek~~lE~~k 304 (1293)
T KOG0996|consen 264 RYKEPIEELMRRVERLN-EDRSEKENRVKLVEKEKKALEGPK 304 (1293)
T ss_pred ccchhHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHhhhH
Confidence 45566777999999995 344556678888888888887533
No 37
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=69.52 E-value=2.4e+02 Score=33.45 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 340 QAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK 375 (399)
Q Consensus 340 ~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~ 375 (399)
.-......+..++....++...+..++.-+..++..
T Consensus 871 ~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~ 906 (1163)
T COG1196 871 EKEELEDELKELEEEKEELEEELRELESELAELKEE 906 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666666665543
No 38
>KOG2196|consensus
Probab=68.36 E-value=60 Score=31.72 Aligned_cols=66 Identities=12% Similarity=0.210 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 334 LESLHAQAGNFATLLKELESVQVDLASNLTNNQSL----------------LTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 334 L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~----------------L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
|.....+=.+.+....+|+.+...|...|++.=.- |.++...+..-+.+|..|...||++++.+
T Consensus 166 ~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i 245 (254)
T KOG2196|consen 166 LSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKI 245 (254)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44444444555556666666666666666554443 44455667888899999999999999888
Q ss_pred cC
Q psy9591 398 KK 399 (399)
Q Consensus 398 ~k 399 (399)
+|
T Consensus 246 ~K 247 (254)
T KOG2196|consen 246 KK 247 (254)
T ss_pred Hh
Confidence 65
No 39
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.23 E-value=72 Score=26.86 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhHHHHHHHHHHHH
Q psy9591 330 RLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSL------------------LTSLEGKMGSDVERIKQDVKALD 391 (399)
Q Consensus 330 RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~------------------L~~ve~~~~~N~~~v~~nv~~Le 391 (399)
=+..++.+-.+.......+..|+....+....++..+.+ ...+-..+.++++.++..++.|+
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~le 87 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQ 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555444433 11222335556666666666666
Q ss_pred HHHHhh
Q psy9591 392 EKIKAL 397 (399)
Q Consensus 392 ~Ri~~L 397 (399)
.++..|
T Consensus 88 k~~~~l 93 (110)
T TIGR02338 88 RQEERL 93 (110)
T ss_pred HHHHHH
Confidence 555544
No 40
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=67.88 E-value=7.4 Score=36.69 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q psy9591 91 QRLQCELKELMDEVSQIKEPA 111 (399)
Q Consensus 91 ~RL~rEveEL~eE~~~~k~~~ 111 (399)
-||+||+.+|...+.+.....
T Consensus 99 vrLkrELa~Le~~l~~~~~~~ 119 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAA 119 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999998765543
No 41
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=67.79 E-value=1.4e+02 Score=35.05 Aligned_cols=69 Identities=13% Similarity=0.278 Sum_probs=40.8
Q ss_pred hhHHHhhhhhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcCC----
Q psy9591 196 SQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDA---- 271 (399)
Q Consensus 196 ~~~~~~~~~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~~---- 271 (399)
++..+..--+-++++-+||+.||+.==... . ...--+.-++.|...|.+|..
T Consensus 1094 ~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l-----~-------------------~ikK~ia~lnnlqqElklLRnEK~R 1149 (1439)
T PF12252_consen 1094 AEKVRVRYETLITDITKRITDLEKAKLDNL-----D-------------------SIKKAIANLNNLQQELKLLRNEKIR 1149 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccH-----H-------------------HHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 444444445567888888888887422211 1 112345556677777777751
Q ss_pred ----------CchhHHHHHHHHHHHHH
Q psy9591 272 ----------AHCDAYDARITHLSNKL 288 (399)
Q Consensus 272 ----------~~Ld~i~~Rl~~L~~el 288 (399)
..++.++.||+.+..++
T Consensus 1150 mh~~~dkVDFSDIEkLE~qLq~~~~kL 1176 (1439)
T PF12252_consen 1150 MHSGTDKVDFSDIEKLEKQLQVIHTKL 1176 (1439)
T ss_pred hccCCCcccHHHHHHHHHHHHHhhhhh
Confidence 24777777777766654
No 42
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=66.60 E-value=90 Score=35.95 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy9591 208 TSLEQRLIKLEN 219 (399)
Q Consensus 208 a~LE~RL~~LE~ 219 (399)
..++..+..++.
T Consensus 680 ~~l~~~~~~l~~ 691 (1179)
T TIGR02168 680 EELEEKIEELEE 691 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 333444433333
No 43
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.19 E-value=1.5e+02 Score=33.48 Aligned_cols=62 Identities=26% Similarity=0.369 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 337 LHAQAGNFATLLKELESVQVDLASNLTNNQSLLT-------SLEGKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 337 LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~-------~ve~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
|.+.|...++.+..+...|..+...++..-..+. .-|..|.+.++.|+..++.|..+|+.++
T Consensus 591 l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk 659 (717)
T PF10168_consen 591 LRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLK 659 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777766665444432 2366788888888888887777777653
No 44
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=65.38 E-value=48 Score=23.75 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9591 338 HAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKAL 390 (399)
Q Consensus 338 H~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~L 390 (399)
|.+.......+..|...-.+|...+....+.|+.++.++......++.-.+.|
T Consensus 5 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l 57 (60)
T cd00193 5 DEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRL 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777788888888999999989999999987776666665554443
No 45
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=64.18 E-value=88 Score=31.72 Aligned_cols=82 Identities=15% Similarity=0.251 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 275 DAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS-ALVPRTLERLIALESLHAQAGNFATLLKELES 353 (399)
Q Consensus 275 d~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~-~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~ 353 (399)
..+-.+|+.++.+++.+...|.. .++.|-+... . .+.|.||.....+.. -|...|...+.
T Consensus 191 ~~~v~~Lr~~l~~l~~lk~eR~~----------l~~~Lk~~~~---~DDI~~~ll~~~~~~e~------lF~~eL~kf~~ 251 (339)
T cd09238 191 ASIVGTLRSNLEELEALGNERAG----------IEDMMKALKR---NDNILAKVMATTGSYDA------LFKEELKKYDS 251 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhh---cCCcHHHHHHhhhhhHH------HHHHHHHHHhh
Confidence 45557889999999999866653 2233322111 3 888999875544333 27777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9591 354 VQVDLASNLTNNQSLLTSLEGK 375 (399)
Q Consensus 354 ~q~~l~~~l~~~~~~L~~ve~~ 375 (399)
-+..+...+...+.+|..+...
T Consensus 252 ~~~~v~~~~~~Q~~ll~~i~~~ 273 (339)
T cd09238 252 VREAVSKNISSQDDLLSRLRAL 273 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877653
No 46
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=63.94 E-value=63 Score=30.19 Aligned_cols=60 Identities=27% Similarity=0.380 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 338 HAQAGNFATLLKELESVQVDLASNLTNNQSLLT-SLEG--KMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 338 H~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~-~ve~--~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
|.+.+.|+..+.+||....+|...+...=..|. ..|. ..+.-+..++..++.||.++.++
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999888877776444443 3333 37777777888888888877664
No 47
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.91 E-value=66 Score=28.01 Aligned_cols=42 Identities=17% Similarity=0.376 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 357 DLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 357 ~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
.+..........|...+.++..-...++..+..++.|+..|.
T Consensus 77 ~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 77 ELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555666777777888888888888887764
No 48
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=62.97 E-value=1.1e+02 Score=35.41 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy9591 209 SLEQRLIKL 217 (399)
Q Consensus 209 ~LE~RL~~L 217 (399)
.++..+..+
T Consensus 685 ~l~~~l~~l 693 (1164)
T TIGR02169 685 GLKRELSSL 693 (1164)
T ss_pred HHHHHHHHH
Confidence 333333333
No 49
>PRK02224 chromosome segregation protein; Provisional
Probab=62.85 E-value=2.7e+02 Score=31.58 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHhhhhcCC
Q psy9591 304 ERDQRVNELYELSRSVDS 321 (399)
Q Consensus 304 ~~~~KI~eLY~~l~~~~~ 321 (399)
+...+|.+++..+..+..
T Consensus 569 ~~~~~~~~~~~~~~~l~~ 586 (880)
T PRK02224 569 EAREEVAELNSKLAELKE 586 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334466666666655544
No 50
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=62.76 E-value=1.4e+02 Score=30.11 Aligned_cols=137 Identities=21% Similarity=0.283 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcC-----CCchhHHHHHH
Q psy9591 207 LTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLID-----AAHCDAYDARI 281 (399)
Q Consensus 207 ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~-----~~~Ld~i~~Rl 281 (399)
+-.+++.|..||...-+.+ +++ .-..-|+..|..|..++.... ..++..+-..+
T Consensus 109 ~~~ler~i~~Le~~~~T~~----L~~-----------------e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei 167 (294)
T COG1340 109 IKSLEREIERLEKKQQTSV----LTP-----------------EEERELVQKIKELRKELEDAKKALEENEKLKELKAEI 167 (294)
T ss_pred HHHHHHHHHHHHHHHHhcC----CCh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999987766 322 122568888999998888765 33555555555
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 282 THLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASN 361 (399)
Q Consensus 282 ~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~ 361 (399)
..+..++..+..+-....-.......++..+|.-...+.. ++ ..+|+..-.++...+.+...-..+.+.
T Consensus 168 ~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rk----------ea-de~he~~ve~~~~~~e~~ee~~~~~~e 236 (294)
T COG1340 168 DELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRK----------EA-DELHEEFVELSKKIDELHEEFRNLQNE 236 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555555555432221000112333344455554443322 11 567888888888888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q psy9591 362 LTNNQSLLTSLEGK 375 (399)
Q Consensus 362 l~~~~~~L~~ve~~ 375 (399)
|..++..|..+...
T Consensus 237 lre~~k~ik~l~~~ 250 (294)
T COG1340 237 LRELEKKIKALRAK 250 (294)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777766654
No 51
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=62.04 E-value=35 Score=28.82 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCc
Q psy9591 204 AAKLTSLEQRLIKLENLLGEHSS 226 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~~~~ 226 (399)
..++...++||..||..|..=|+
T Consensus 41 ~~~~~~~~~Rl~~lE~~l~~LPt 63 (106)
T PF10805_consen 41 EERLDEHDRRLQALETKLEHLPT 63 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 45677779999999999988663
No 52
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=61.85 E-value=71 Score=25.28 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHhh
Q psy9591 346 TLLKELESVQVDLASNLTNNQSLLTSLEGK---MGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 346 ~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
+.++.|+..|.+-....+.|+.....++.. ....-......|..|..++..|
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999998887654 2233335555566665555554
No 53
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=61.67 E-value=91 Score=26.38 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHH
Q psy9591 334 LESLHAQAGNFATLLKELESVQVDLASNLT-------NNQSLLTSLEGK-----------MGSDVERIKQDVKALDEKIK 395 (399)
Q Consensus 334 L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~-------~~~~~L~~ve~~-----------~~~N~~~v~~nv~~Le~Ri~ 395 (399)
|.-||.-=......|..+.+.|+.+...|. +.++.|..++.. -..-|..|..+++.||.|+.
T Consensus 11 l~DL~~rYs~L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~LK 90 (107)
T PRK15365 11 YRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLK 90 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666677777777644443 345556555544 34456777899999999998
Q ss_pred hhc
Q psy9591 396 ALK 398 (399)
Q Consensus 396 ~L~ 398 (399)
.|+
T Consensus 91 nln 93 (107)
T PRK15365 91 QLN 93 (107)
T ss_pred hcC
Confidence 875
No 54
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=61.27 E-value=3.7e+02 Score=32.64 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHHHHHHhCCC
Q psy9591 203 TAAKLTSLEQRLIKLENLLGEH 224 (399)
Q Consensus 203 ~~~~ia~LE~RL~~LE~~lG~~ 224 (399)
-..+|++|+.||+.|+..|..-
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l 761 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAEL 761 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888887653
No 55
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.56 E-value=58 Score=29.39 Aligned_cols=23 Identities=22% Similarity=0.700 Sum_probs=16.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 376 MGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 376 ~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
+...+..+...++.|+.|+..|.
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777664
No 56
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.52 E-value=1.8e+02 Score=28.41 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9591 346 TLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKI 394 (399)
Q Consensus 346 ~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri 394 (399)
.-|..|...+..++..+...+.-+..+|..|.++...+...|+.+++.+
T Consensus 110 ~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~ 158 (239)
T COG1579 110 DELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEG 158 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555556666666666666666665543
No 57
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=59.50 E-value=1.5e+02 Score=29.90 Aligned_cols=83 Identities=14% Similarity=0.265 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 273 HCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS-ALVPRTLERLIALESLHAQAGNFATLLKEL 351 (399)
Q Consensus 273 ~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~-~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~L 351 (399)
..+.+-.+|+.++.+++.+...|.. .+++|=+ +... .+.|.||..... +.+. =|.+-|...
T Consensus 185 ~~~~~v~~Lr~ll~kl~~lk~eR~~----------l~~~Lk~---k~~~DDI~~~ll~~~~~----~~e~-lf~~eL~k~ 246 (337)
T cd09234 185 EDEAIEKELKRILNKVNEMRKQRRS----------LEQQLRD---AIHEDDITSKLVTTTGG----DMED-LFKEELKKH 246 (337)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH---HhhcCCchHHHHHhcch----hHHH-HHHHHHHHh
Confidence 4556677888899999888765553 2222211 1223 677777766643 1122 355566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9591 352 ESVQVDLASNLTNNQSLLTSLE 373 (399)
Q Consensus 352 e~~q~~l~~~l~~~~~~L~~ve 373 (399)
+.-+..|...+...+.+|..+.
T Consensus 247 ~~~~~~l~~~~~~Q~~ll~~i~ 268 (337)
T cd09234 247 DQLVNLIEQNLAAQENILKALT 268 (337)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666554
No 58
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.23 E-value=1.2e+02 Score=26.38 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=53.0
Q ss_pred CCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 322 ALVPRTLERLIA-LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 322 ~~LP~ll~RLrs-L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
..-+++|+||.+ |+.+-.+.+.+-..+..|+.....+..+|-..-.-.+.++. ..+.+..++..++.|+.|-+.+
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-LKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344678999975 78888889999999999999988888887765444444432 3344556677777777775543
No 59
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=59.02 E-value=1.6e+02 Score=28.47 Aligned_cols=141 Identities=18% Similarity=0.306 Sum_probs=78.8
Q ss_pred CCChHHHHHHHHHHHhhc----CC--CchhHHHHHHHHHHHHHHHHHHhcCCCC--C-------------------CCch
Q psy9591 252 HNSLVENTDWLRAQINLI----DA--AHCDAYDARITHLSNKLDKIIEKANSVD--P-------------------KDSE 304 (399)
Q Consensus 252 ~~~L~~~l~~L~~qlslL----~~--~~Ld~i~~Rl~~L~~ele~l~~kk~~~~--~-------------------~~~~ 304 (399)
+..|...+..+..++.-. ++ ..++.++..+..|..+++.+.++-.... + .-..
T Consensus 19 ~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~ 98 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQN 98 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566566665555543 33 2588888888888888888875322100 0 0012
Q ss_pred hHHHHHHHHHhhhhcCC--CCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy9591 305 RDQRVNELYELSRSVDS--ALVPRTLERLIALESLHAQAGNFATLL--KELESVQVDLASNLTNNQSLLTSLEGKMG--- 377 (399)
Q Consensus 305 ~~~KI~eLY~~l~~~~~--~~LP~ll~RLrsL~~LH~~Aa~f~~~L--~~Le~~q~~l~~~l~~~~~~L~~ve~~~~--- 377 (399)
-..+|++|-..+..+.. ..+|+ .+|....++|...-.-+ ..+......-..+++.-+.+|..|...|.
T Consensus 99 l~~~i~~l~~~~~~l~~~~~~~~~-----~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~ 173 (264)
T PF06008_consen 99 LQDNIQELIEQVESLNENGDQLPS-----EDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQ 173 (264)
T ss_pred HHHHHHHHHHHHHHhCcccCCCCH-----HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33345555555554444 45565 34555556665555555 22555566666677777778888877652
Q ss_pred -Hh---HHHHHHHHHHHHHHHHhh
Q psy9591 378 -SD---VERIKQDVKALDEKIKAL 397 (399)
Q Consensus 378 -~N---~~~v~~nv~~Le~Ri~~L 397 (399)
+| .+.|..++...+.++..|
T Consensus 174 ~~~~~l~~~i~~~L~~~~~kL~Dl 197 (264)
T PF06008_consen 174 QENESLAEAIRDDLNDYNAKLQDL 197 (264)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22 233555566666665544
No 60
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=58.98 E-value=1.5e+02 Score=35.33 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 304 ERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTN 364 (399)
Q Consensus 304 ~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~ 364 (399)
....+|+.++.....++..-+|.+..|+-.|..+..+..+.-..+..|.....++......
T Consensus 324 ~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~ 384 (1201)
T PF12128_consen 324 RIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNK 384 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777665577777777777777777777777777777777776655444
No 61
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=58.32 E-value=3.4e+02 Score=32.95 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9591 358 LASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKA 396 (399)
Q Consensus 358 l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~ 396 (399)
+..++.....-+..++..+..=.+.|...+..+..+++.
T Consensus 901 ~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~ 939 (1353)
T TIGR02680 901 ARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALAS 939 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444443332244444444444444433
No 62
>PRK01156 chromosome segregation protein; Provisional
Probab=55.89 E-value=3.6e+02 Score=30.78 Aligned_cols=15 Identities=7% Similarity=0.262 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhC
Q psy9591 208 TSLEQRLIKLENLLG 222 (399)
Q Consensus 208 a~LE~RL~~LE~~lG 222 (399)
-+|..++..|+..+|
T Consensus 419 ~~l~~~i~~l~~~i~ 433 (895)
T PRK01156 419 QDISSKVSSLNQRIR 433 (895)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 63
>KOG0994|consensus
Probab=55.82 E-value=4.4e+02 Score=31.75 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhhhccC
Q psy9591 155 GAALKTLVMRLDSFALS 171 (399)
Q Consensus 155 ~~~~k~l~~ql~~~~~~ 171 (399)
....+.|+.+|..|...
T Consensus 1470 ~~el~~Li~~v~~Flt~ 1486 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLTQ 1486 (1758)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34577888889888643
No 64
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=55.42 E-value=1.8e+02 Score=28.31 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 335 ESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 335 ~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
..|-.+..+.-..+..|+..+..+...+...+.-+...+..+...+..+..-...+-.....|
T Consensus 106 ~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 106 NSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777888888888888888888888888888888888877777666666655544
No 65
>PRK14011 prefoldin subunit alpha; Provisional
Probab=55.36 E-value=1.4e+02 Score=26.77 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 330 RLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSL 368 (399)
Q Consensus 330 RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~ 368 (399)
.+..|+.+-+++..+.+.++.|...+.+....++..+.+
T Consensus 8 ~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l 46 (144)
T PRK14011 8 QFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGL 46 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456788999999999999999999999998888776643
No 66
>KOG0994|consensus
Probab=55.32 E-value=1.3e+02 Score=35.86 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=32.6
Q ss_pred HHHHHHhhhhcCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 309 VNELYELSRSVDS-ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGS 378 (399)
Q Consensus 309 I~eLY~~l~~~~~-~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~ 378 (399)
..+|-+.+.+|+. . |+--+.+++.-|+..+++....+.--.........- .-+++|.+.+..|++
T Consensus 1283 ~keL~e~~~~ik~sd----i~GA~~~~r~a~~~s~ea~~r~~~s~~~l~s~~~~s-R~e~l~~k~k~~f~~ 1348 (1758)
T KOG0994|consen 1283 YKELREQLEKIKESD----ILGAFNSTRHAYEQSAEAERRVDASSRELASLVDQS-RVEELLVKQKGDFGG 1348 (1758)
T ss_pred HHHHHHHHHHhhccC----chhHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhh-HHHHHHHHhhhcccc
Confidence 3455555556655 3 334456666666666666655544332222222221 345556555555554
No 67
>KOG0963|consensus
Probab=54.55 E-value=2.8e+02 Score=30.70 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q psy9591 89 KYQRLQCELKELMDEVSQIKEPA 111 (399)
Q Consensus 89 Kl~RL~rEveEL~eE~~~~k~~~ 111 (399)
.+.|||||+.+-.-+++.+++..
T Consensus 16 dle~LQreLd~~~~~l~~~Q~~S 38 (629)
T KOG0963|consen 16 DLERLQRELDAEATEIAQRQDES 38 (629)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhH
Confidence 47789999999888888776653
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.41 E-value=2.9e+02 Score=29.32 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 340 QAGNFATLLKELESVQVDLASNLTNNQS 367 (399)
Q Consensus 340 ~Aa~f~~~L~~Le~~q~~l~~~l~~~~~ 367 (399)
+......-+..++....++.....++.+
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~ 334 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNE 334 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333
No 69
>KOG0963|consensus
Probab=54.36 E-value=2.6e+02 Score=30.99 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=48.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhc----CC-CCCchHHHHHHHHH-------HHHHH
Q psy9591 273 HCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSV----DS-ALVPRTLERLIALE-------SLHAQ 340 (399)
Q Consensus 273 ~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~----~~-~~LP~ll~RLrsL~-------~LH~~ 340 (399)
.+..+..=++....+++.|.++... -++++++++.++ +| |+|-....-+..++ .+|..
T Consensus 60 k~k~~~~llK~yQ~EiD~LtkRsk~----------aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~ 129 (629)
T KOG0963|consen 60 KLKMVNPLLKSYQSEIDNLTKRSKF----------AEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEE 129 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence 3444555556666667766644332 123333333333 33 55555555444444 47777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 341 AGNFATLLKELESVQVDLASNLTNNQSLL 369 (399)
Q Consensus 341 Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L 369 (399)
...+-.-+..++..|..+....+..++..
T Consensus 130 lee~~~el~~~k~qq~~v~~l~e~l~k~~ 158 (629)
T KOG0963|consen 130 LEEVNNELADLKTQQVTVRNLKERLRKLE 158 (629)
T ss_pred HHHHHHHHhhhhhhHHHHHhHHHHHHHHH
Confidence 77777777777777776666665555553
No 70
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=53.93 E-value=3.5e+02 Score=30.05 Aligned_cols=105 Identities=17% Similarity=0.263 Sum_probs=61.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcCCCchhHHHHHH
Q psy9591 202 NTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARI 281 (399)
Q Consensus 202 ~~~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl 281 (399)
....+|-+||+.|+.|...+-....+ ..+......-..|...+.-| -..++.+..++
T Consensus 47 ~~~~~V~eLE~sL~eLk~q~~~~~~~----------------------~~pa~pse~E~~Lq~E~~~L-~kElE~L~~ql 103 (617)
T PF15070_consen 47 HDISRVQELERSLSELKNQMAEPPPP----------------------EPPAGPSEVEQQLQAEAEHL-RKELESLEEQL 103 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCc----------------------cccccchHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 44788999999999999988765421 01112222223455554444 22466667777
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHH
Q psy9591 282 THLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQ 340 (399)
Q Consensus 282 ~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~ 340 (399)
+....+.+.|+... .+++.+|.+|=..+.+|.- ...+|.+-|..++.+
T Consensus 104 qaqv~~ne~Ls~L~-------~EqEerL~ELE~~le~~~e----~~~D~~kLLe~lqsd 151 (617)
T PF15070_consen 104 QAQVENNEQLSRLN-------QEQEERLAELEEELERLQE----QQEDRQKLLEQLQSD 151 (617)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhccc
Confidence 77666666664321 3677788888778888765 113444444444433
No 71
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=53.59 E-value=3.6e+02 Score=30.13 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccchhhcCCHHHHHHHHHHHHhhhcccccCccccccccchhHHHHHHHHHhh
Q psy9591 86 PLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRL 165 (399)
Q Consensus 86 ~~qKl~RL~rEveEL~eE~~~~k~~~~~~~~~~~~~~~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~~k~l~~ql 165 (399)
+..++..|+.++++.+.+++.-+....-.....+.+...++..|..+|...
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a----------------------------- 249 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRA----------------------------- 249 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHH-----------------------------
Q ss_pred hhhccCCCCCCCCCCCCCCCCccceecccchhHHHhhhhhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccc
Q psy9591 166 DSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVC 245 (399)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~vtye~~~~~~~~~~~~~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~ 245 (399)
.++.++.+.|+..|+..+...+.....+...
T Consensus 250 --------------------------------------~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~----------- 280 (754)
T TIGR01005 250 --------------------------------------RANRAAAEGTADSVKKALQNGGSLDVLPEVL----------- 280 (754)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHhcCCCccchhhhh-----------
Q ss_pred cccCCCCCChHHHHHHHHHHHhhcC-------------CCchhHHHHHHHHHHHHHHH-HHHhcCCCCCCCchhHHHHHH
Q psy9591 246 KLFGGGHNSLVENTDWLRAQINLID-------------AAHCDAYDARITHLSNKLDK-IIEKANSVDPKDSERDQRVNE 311 (399)
Q Consensus 246 ~~~~~~~~~L~~~l~~L~~qlslL~-------------~~~Ld~i~~Rl~~L~~ele~-l~~kk~~~~~~~~~~~~KI~e 311 (399)
.....+-+.+..|..++.-+. .+.+-.+.+++..|.+.+.+ +..-.............+...
T Consensus 281 ----~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~ 356 (754)
T TIGR01005 281 ----SSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQ 356 (754)
T ss_pred ----cCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhcCC--CCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 312 LYELSRSVDS--ALVPRTLERLIALESLHAQAGNFATLL 348 (399)
Q Consensus 312 LY~~l~~~~~--~~LP~ll~RLrsL~~LH~~Aa~f~~~L 348 (399)
|=..+..++. ..+|..-.++..|..=.+-+.+..+.+
T Consensus 357 L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~l 395 (754)
T TIGR01005 357 LVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESY 395 (754)
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHH
No 72
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.18 E-value=1.9e+02 Score=27.43 Aligned_cols=76 Identities=12% Similarity=0.214 Sum_probs=36.4
Q ss_pred CCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 322 ALVPRTLERLIALESLHAQA-GNFATLLKELESVQVDLASNLTNNQSLLTSLEG---KMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 322 ~~LP~ll~RLrsL~~LH~~A-a~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~---~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
.--|++.+||..|+.=.+++ +...+.-.+.++..++|+..+.+.+..+..+++ .+.+-+...+..+..|+..+..+
T Consensus 86 s~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 86 STTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466667766555433333 222222233344455555555554444444432 25555555555555555555444
No 73
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=52.52 E-value=1.4e+02 Score=24.89 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 337 LHAQAGNFATLLKELESVQVDLASNLTN 364 (399)
Q Consensus 337 LH~~Aa~f~~~L~~Le~~q~~l~~~l~~ 364 (399)
+-.+...+.+.+..|+....+....++.
T Consensus 11 l~~~~~~l~~~~~~l~~~~~E~~~v~~E 38 (105)
T cd00632 11 LQQQLQAYIVQRQKVEAQLNENKKALEE 38 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555444443333
No 74
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=52.40 E-value=1.8e+02 Score=26.76 Aligned_cols=124 Identities=14% Similarity=0.209 Sum_probs=63.6
Q ss_pred ccCCCCCChHHHHHHHHHHHhhcCC----CchhHHHHHHHHHHHHHHHHHHhcCCCCC----CCchhHHHHHHHHHhhhh
Q psy9591 247 LFGGGHNSLVENTDWLRAQINLIDA----AHCDAYDARITHLSNKLDKIIEKANSVDP----KDSERDQRVNELYELSRS 318 (399)
Q Consensus 247 ~~~~~~~~L~~~l~~L~~qlslL~~----~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~----~~~~~~~KI~eLY~~l~~ 318 (399)
+|...+..|.+.|..+.+-+.-|.. ..++.+.==...|...+++|...=+..+. ..+.....|+.||..|.+
T Consensus 34 LF~~~~~~L~~yl~Ei~~~l~~L~~~~~~~~~~~~~~laEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~ 113 (173)
T PF07445_consen 34 LFSCRSQRLSDYLQEIEQTLAQLQQQVEQNRLQQVAFLAEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQ 113 (173)
T ss_pred HHhccCchHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHHHH
Confidence 4556778999999999999998862 22222222233444455555421110000 011114678888887765
Q ss_pred cCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 319 VDS---ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKM 376 (399)
Q Consensus 319 ~~~---~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~ 376 (399)
-.. -++-.|-+|=..|.. |..+ .-..+......+..-+...+.++..+|..+
T Consensus 114 hqe~erRL~~mi~~~e~~l~~----~~~~--~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I 168 (173)
T PF07445_consen 114 HQEYERRLLAMIQEREQQLEQ----AQSF--EQQQLQQEILALEQRLQRCRQAIEKIEEQI 168 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 333333333222222 1122 223444455556666667777777776653
No 75
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=52.18 E-value=1.2e+02 Score=24.64 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=14.1
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q psy9591 376 MGSDVERIKQDVKALDEKIK 395 (399)
Q Consensus 376 ~~~N~~~v~~nv~~Le~Ri~ 395 (399)
|+.+++.|...|..|..+++
T Consensus 62 mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 62 MKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777776665
No 76
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=51.67 E-value=3e+02 Score=30.01 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCC
Q psy9591 205 AKLTSLEQRLIKLENLLGEHS 225 (399)
Q Consensus 205 ~~ia~LE~RL~~LE~~lG~~~ 225 (399)
.++.++|..|...|..+-...
T Consensus 75 ~~~~~ie~~L~~ae~~~~~~r 95 (560)
T PF06160_consen 75 KQLPEIEEQLFEAEEYADKYR 95 (560)
T ss_pred HhhHHHHHHHHHHHHHHhccc
Confidence 567888999998888765443
No 77
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=50.47 E-value=1.8e+02 Score=25.70 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=8.2
Q ss_pred hhhhcCCCCCchHHHHHHH
Q psy9591 315 LSRSVDSALVPRTLERLIA 333 (399)
Q Consensus 315 ~l~~~~~~~LP~ll~RLrs 333 (399)
++.++++..+=.+..|++.
T Consensus 20 ~leklds~~~l~Lc~R~Q~ 38 (131)
T PF10158_consen 20 VLEKLDSRPVLRLCSRYQE 38 (131)
T ss_pred HHHccChHHHHHHHHHHHH
Confidence 4555555222234445544
No 78
>KOG2629|consensus
Probab=50.46 E-value=79 Score=31.71 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 335 ESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 335 ~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
+.|.++.....++++.|+..++.+...+...+.-|..-=..+..+......|+..||.-|..+
T Consensus 125 ~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~I 187 (300)
T KOG2629|consen 125 RQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTI 187 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456666667777777777777766666554333221111223333335555555555555443
No 79
>KOG4057|consensus
Probab=50.17 E-value=1.3e+02 Score=27.48 Aligned_cols=57 Identities=16% Similarity=0.335 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy9591 325 PRTLERLIALESLHAQA-------GNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVE 381 (399)
Q Consensus 325 P~ll~RLrsL~~LH~~A-------a~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~ 381 (399)
|-+.+||++|-.+-.+. .++.+-|..=.+.+..|...-.+..+.+..||..+...+.
T Consensus 5 ~l~~dri~Al~~iEkeI~~~mq~Ag~iiqeLgKEK~~~kn~e~qa~~F~ksit~VE~eLSaQi~ 68 (180)
T KOG4057|consen 5 PLLTDRIQALVTIEKEIDEMMQCAGEIIQELGKEKQIGKNMEDQANNFKKSITQVENELSAQIQ 68 (180)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45669999988776653 3333444444455556666666666667777665444443
No 80
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=49.33 E-value=1.9e+02 Score=26.24 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH
Q psy9591 258 NTDWLRAQINLIDAAHCDAYDARITHLSNKLDKII 292 (399)
Q Consensus 258 ~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~ 292 (399)
-+..+..+++-+ +..++.++.++..+..++..+.
T Consensus 82 e~~~~~~~l~~l-~~el~~l~~~~~~~~~~l~~~~ 115 (191)
T PF04156_consen 82 ELSELQQQLQQL-QEELDQLQERIQELESELEKLK 115 (191)
T ss_pred hHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454444 3555666666666666666554
No 81
>KOG0933|consensus
Probab=49.02 E-value=4e+02 Score=31.38 Aligned_cols=129 Identities=18% Similarity=0.240 Sum_probs=57.0
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHH
Q psy9591 249 GGGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTL 328 (399)
Q Consensus 249 ~~~~~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll 328 (399)
.....+++..|..|...- ..+.++.+.+..+..++..+. .+..|-+.|+..|..-- .-|-.+.
T Consensus 666 ~~~~a~~L~~l~~l~~~~-----~~~~~~q~el~~le~eL~~le-----------~~~~kf~~l~~ql~l~~-~~l~l~~ 728 (1174)
T KOG0933|consen 666 RSKGADLLRQLQKLKQAQ-----KELRAIQKELEALERELKSLE-----------AQSQKFRDLKQQLELKL-HELALLE 728 (1174)
T ss_pred CCCcccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344566777766665432 233444444444444444443 23334444444332211 2233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9591 329 ERLIALESLHAQAGNFATLLKELESVQVDLAS---NLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIK 395 (399)
Q Consensus 329 ~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~---~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~ 395 (399)
.|+.. ...|...+..-..+..++..+.+|.. .+++.+.-+..+|..|..--..=++.+++|+..|.
T Consensus 729 ~r~~~-~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik 797 (1174)
T KOG0933|consen 729 KRLEQ-NEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIK 797 (1174)
T ss_pred HHHhc-ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHH
Confidence 55544 55555544444444444444443333 23333333444455544444444444444444443
No 82
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=47.85 E-value=1.7e+02 Score=24.61 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHh
Q psy9591 272 AHCDAYDARITHLSNKLDKIIEK 294 (399)
Q Consensus 272 ~~Ld~i~~Rl~~L~~ele~l~~k 294 (399)
+.++.+-.+++.+..++..+...
T Consensus 3 ~~~q~~~~~~q~~q~~~~~l~~q 25 (110)
T TIGR02338 3 PQVQNQLAQLQQLQQQLQAVATQ 25 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555443
No 83
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=47.83 E-value=1.4e+02 Score=23.81 Aligned_cols=58 Identities=21% Similarity=0.352 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 341 AGNFATLLKELESVQVDLASNLTN-NQSLLTSLE-------GKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 341 Aa~f~~~L~~Le~~q~~l~~~l~~-~~~~L~~ve-------~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
+..+.+.+........++...++. .+..|.++. +....=+......+..||.||+.|.
T Consensus 12 ~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 12 AKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555666666666665 566666653 2345555566778888888888875
No 84
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=47.71 E-value=3.2e+02 Score=27.76 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHhhhhcCC-------------
Q psy9591 256 VENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDP-KDSERDQRVNELYELSRSVDS------------- 321 (399)
Q Consensus 256 ~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~-~~~~~~~KI~eLY~~l~~~~~------------- 321 (399)
...+..|.++-.+| -..++....|.+.|..++..|-...-.... .-.+-+-=.|.|+..+..++.
T Consensus 26 ~~~~~sL~qen~~L-k~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EE 104 (310)
T PF09755_consen 26 RKRIESLQQENRVL-KRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEE 104 (310)
T ss_pred HHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333 236888899999999888888532111000 001222223445555555444
Q ss_pred -CCCchHHHHHHHHHHHHHHHHHHH
Q psy9591 322 -ALVPRTLERLIALESLHAQAGNFA 345 (399)
Q Consensus 322 -~~LP~ll~RLrsL~~LH~~Aa~f~ 345 (399)
.+.-.+..||..|+.-|.+..+.-
T Consensus 105 E~ltn~L~rkl~qLr~EK~~lE~~L 129 (310)
T PF09755_consen 105 EFLTNDLSRKLNQLRQEKVELENQL 129 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233456667777777666555443
No 85
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=47.69 E-value=1.5e+02 Score=28.53 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=57.3
Q ss_pred HHHHHHHhhhhcCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy9591 308 RVNELYELSRSVDS-ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQD 386 (399)
Q Consensus 308 KI~eLY~~l~~~~~-~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~n 386 (399)
|+=-=|+...-++| -+-|+. +.|..+ -.+.-.|- -.|...+..+...-+.++.....-+..+..||..+..|
T Consensus 64 k~fGRYG~aSgV~P~~lwPt~-eelee~---e~Ee~~~~---~sl~em~k~~~~~~~~k~~k~~~Rek~Ia~nM~Kmpk~ 136 (217)
T PF10147_consen 64 KLFGRYGLASGVDPGILWPTP-EELEEQ---EYEEVEWP---PSLQEMLKELREKKEEKEEKRLAREKEIAKNMAKMPKW 136 (217)
T ss_pred HHHHhhhhhcCCChhhhCCCH-HHHHHH---HHHHHcCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444555555677 777877 777654 23333333 34455566666666777777888889999999999999
Q ss_pred HHHHHHHHHhh
Q psy9591 387 VKALDEKIKAL 397 (399)
Q Consensus 387 v~~Le~Ri~~L 397 (399)
++++..++..-
T Consensus 137 i~e~~~~~~kk 147 (217)
T PF10147_consen 137 IAEWKAKIAKK 147 (217)
T ss_pred HHHHHHHHHHH
Confidence 99999998653
No 86
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=47.14 E-value=1.8e+02 Score=25.31 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9591 336 SLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIK 395 (399)
Q Consensus 336 ~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~ 395 (399)
.+|......-.-...|...-..+.++..+|..+.+.+...+++ +.-|+.|.+.+|.-|.
T Consensus 44 ~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKE-iGDveNWa~~iE~Dl~ 102 (121)
T PF06320_consen 44 EAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKE-IGDVENWAEMIERDLR 102 (121)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Confidence 3566666666666666666667777777777777777666542 4555555555554443
No 87
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=46.96 E-value=2.1e+02 Score=30.02 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHH
Q psy9591 337 LHAQAGNFATLLKELESVQVDLA-----------SNLTNNQSLLTSLEGK-----------MGSDVERIKQDVKALD 391 (399)
Q Consensus 337 LH~~Aa~f~~~L~~Le~~q~~l~-----------~~l~~~~~~L~~ve~~-----------~~~N~~~v~~nv~~Le 391 (399)
++.+..-+.+.|.+-.-++..|+ .+|.+.+.-|..||++ +.+||+.++..|.+||
T Consensus 242 ~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 242 YQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44444555555544433333333 3445555667777764 7889999999999888
No 88
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=46.71 E-value=2.5e+02 Score=26.35 Aligned_cols=155 Identities=18% Similarity=0.193 Sum_probs=76.2
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcCCC----chhHHH
Q psy9591 203 TAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAA----HCDAYD 278 (399)
Q Consensus 203 ~~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~~~----~Ld~i~ 278 (399)
....+..||.+|..|.+.+..-. . ....|..++..+...+..|.+. .|...-
T Consensus 9 ~k~~i~~Le~~Lk~l~~~~~~l~------~------------------~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l 64 (216)
T cd07627 9 KKQYLDSLESQLKQLYKSLELVS------S------------------QRKELASATEEFAETLEALSSLELSKSLSDLL 64 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------H------------------HHHHHHHHHHHHHHHHHHHHHhhcchHhHHHH
Confidence 35678899999999999885432 1 1134666666677777766532 333333
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHH-HHHHhhhhcCC--CCCchHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy9591 279 ARITHLSNKLDKIIEKANSVDPKDSERDQRVN-ELYELSRSVDS--ALVPRTLERLIALESLHAQ---AGNFATLLKELE 352 (399)
Q Consensus 279 ~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~-eLY~~l~~~~~--~~LP~ll~RLrsL~~LH~~---Aa~f~~~L~~Le 352 (399)
.++.....++..+..+-+. ...-+.. -|++.+.-+.+ .+ +-.|.+.+..+..- ....-..+..|.
T Consensus 65 ~~~a~~~~~~~~~~~~~a~------~e~~~l~~~L~ey~r~~~Svk~~---~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~ 135 (216)
T cd07627 65 AALAEVQKRIKESLERQAL------QDVLTLGVTLDEYIRSIGSVRAA---FAQRQKLWQYWQSAESELSKKKAQLEKLK 135 (216)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444333221 1111222 34444444433 22 33444444443333 333333333332
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9591 353 -------SVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKAL 390 (399)
Q Consensus 353 -------~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~L 390 (399)
.....+..+|..|+......+..|..=-+.|..-|...
T Consensus 136 ~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF 180 (216)
T cd07627 136 RQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERF 180 (216)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22335666677777776666655444444444444444
No 89
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=46.64 E-value=1e+02 Score=28.52 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 346 TLLKELESVQVDLASNLTNNQSLLTSLEGK--------MGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 346 ~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~--------~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
+.+.-|+.....+...|+.++..|...-.. =..-|+-+...+..||+||+++.
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443322 23456667777788888887753
No 90
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=46.29 E-value=2.3e+02 Score=25.80 Aligned_cols=75 Identities=21% Similarity=0.321 Sum_probs=45.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9591 322 ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQS-------LLTSLEGKMGSDVERIKQDVKALDEKI 394 (399)
Q Consensus 322 ~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~-------~L~~ve~~~~~N~~~v~~nv~~Le~Ri 394 (399)
.++|.||.=|-.|..++.....--..+..|......+..+...-.. -+..+|..+.+-..-....|..|+...
T Consensus 26 ~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~ 105 (158)
T PF09744_consen 26 GLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEEN 105 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999887776666666666555555544433322 244445555554444545555555444
Q ss_pred Hh
Q psy9591 395 KA 396 (399)
Q Consensus 395 ~~ 396 (399)
..
T Consensus 106 r~ 107 (158)
T PF09744_consen 106 RQ 107 (158)
T ss_pred HH
Confidence 33
No 91
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.26 E-value=2.1e+02 Score=27.53 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy9591 342 GNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVK 388 (399)
Q Consensus 342 a~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~ 388 (399)
.+....+...++...++..++.+.+..-..+.--|...+..++..|+
T Consensus 73 ~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 73 EQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444444444444445555555555555
No 92
>PHA02562 46 endonuclease subunit; Provisional
Probab=46.13 E-value=3.9e+02 Score=28.36 Aligned_cols=16 Identities=0% Similarity=0.349 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHh
Q psy9591 206 KLTSLEQRLIKLENLL 221 (399)
Q Consensus 206 ~ia~LE~RL~~LE~~l 221 (399)
.+..++..+..+++.+
T Consensus 263 ~~~~~~~~l~~~~~~~ 278 (562)
T PHA02562 263 AAAKIKSKIEQFQKVI 278 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555543
No 93
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=45.67 E-value=2.5e+02 Score=27.57 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 334 LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 334 L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
+..+..+....-..+..|......+.......+..|..++..+.......+.-|..||..|..|
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l 274 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAEL 274 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHH
Confidence 4445555556666666666666666666666666677777777777777777777777776654
No 94
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=44.68 E-value=1.7e+02 Score=23.88 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 351 LESVQVDLASNLTNNQSLLTSLEGKM 376 (399)
Q Consensus 351 Le~~q~~l~~~l~~~~~~L~~ve~~~ 376 (399)
|......+...+.....++.-++..+
T Consensus 77 l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444433
No 95
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=44.57 E-value=17 Score=37.43 Aligned_cols=50 Identities=14% Similarity=0.368 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9591 343 NFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKA 396 (399)
Q Consensus 343 ~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~ 396 (399)
.+...++++|...+++...+......+..++. .+......+.+||.|+..
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k----~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEK----RIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHhhccC
Confidence 56677888888888877777776666655543 444555677888888743
No 96
>KOG0976|consensus
Probab=44.39 E-value=5.6e+02 Score=29.66 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHH
Q psy9591 253 NSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLI 332 (399)
Q Consensus 253 ~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLr 332 (399)
.-|.+..+.|..+=++| ...+-..+-+|+.+..+++.+..-+.. ...++++.+|+-.+-..=-+ -.+.+==.
T Consensus 266 k~ieE~m~qlk~kns~L-~~ElSqkeelVk~~qeeLd~lkqt~t~-a~gdseqatkylh~enmklt------rqkadirc 337 (1265)
T KOG0976|consen 266 KEIEEKMRQLKAKNSVL-GDELSQKEELVKELQEELDTLKQTRTR-ADGDSEQATKYLHLENMKLT------RQKADIRC 337 (1265)
T ss_pred HHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 45666777777777776 345666777888888888888654433 13567777776554332111 12222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 333 ALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG 374 (399)
Q Consensus 333 sL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~ 374 (399)
.|..-...|..|..-+..||+............++.+.+||.
T Consensus 338 ~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~ 379 (1265)
T KOG0976|consen 338 ALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEE 379 (1265)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455556668888999999999888888888888877777764
No 97
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=43.68 E-value=2.4e+02 Score=25.24 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 370 TSLEGKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 370 ~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
+.+-.++.+|+.++++++.....+|.+|.
T Consensus 96 e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le 124 (146)
T PF08702_consen 96 ETKIINQPSNIRVLQNILRSNRQKIQRLE 124 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444688888999999999998888885
No 98
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=43.49 E-value=2.4e+02 Score=25.11 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHH
Q psy9591 327 TLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMG---SDVERIKQDVKALDEKI 394 (399)
Q Consensus 327 ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~---~N~~~v~~nv~~Le~Ri 394 (399)
+-++|..+..--.++..-......|.....-|..++...+.-|....+.+. ...+.++..|+.||.+.
T Consensus 54 ~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~ 124 (143)
T PF12718_consen 54 LEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQER 124 (143)
T ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH
Confidence 445555656555566665566667777777777777777777766655433 45555555555555544
No 99
>KOG0995|consensus
Probab=43.43 E-value=4.9e+02 Score=28.67 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhccccccccchhhcC------CHHHHHHHHHHHHhhhc
Q psy9591 82 EKETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKL------SVQQIEELVSQVSAIKL 138 (399)
Q Consensus 82 ~~ET~~qKl~RL~rEveEL~eE~~~~k~~~~~~~~~~~~~------~~~~l~~L~~~L~~L~~ 138 (399)
-.|++..|++||+.-+.-++.=+..++.-...=...-+.+ -..+++.|+++-+.|+-
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888877776655543321000000000 12366777777777753
No 100
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=42.98 E-value=3.2e+02 Score=28.68 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=53.0
Q ss_pred cchhHHHhhhhhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcCCC-
Q psy9591 194 LQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAA- 272 (399)
Q Consensus 194 ~~~~~~~~~~~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~~~- 272 (399)
.+|+.+.--......++..||..++..+...- ...+. .-...++.|..++...+|.
T Consensus 244 ~TPtaaae~~~p~~~el~qrLd~l~~RL~~am----~~~L~-------------------~~r~rL~~L~~RL~~~~P~~ 300 (432)
T TIGR00237 244 PTPSAAAEIVSPNQDELLQRLDGFNVRLHRAF----DTLLH-------------------QKKARLEQLVASLQRQHPQN 300 (432)
T ss_pred CCcHHHHHHhCccHHHHHHHHHHHHHHHHHHH----HHHHH-------------------HHHHHHHHHHHhhhhcCHHH
Confidence 45766655556677778888888877664321 11111 1234556666676666653
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC
Q psy9591 273 HCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS 321 (399)
Q Consensus 273 ~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~ 321 (399)
.++.-..|+..+...|...-...- .....++..+-..|..+.|
T Consensus 301 ~L~~~~qrLd~L~~RL~~a~~~~L------~~k~~rL~~L~~rL~aLSP 343 (432)
T TIGR00237 301 KLALQQLQFEKLEKRKQAALNKQL------ERTRQKKTRLTKRLTQTNP 343 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCH
Confidence 455556666666665554432221 1334455555444444444
No 101
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=42.88 E-value=5e+02 Score=28.69 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=44.1
Q ss_pred HHHhhhhcCCCCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 312 LYELSRSVDSALVPRTLERLIALESLHA----QAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG 374 (399)
Q Consensus 312 LY~~l~~~~~~~LP~ll~RLrsL~~LH~----~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~ 374 (399)
|-++-..|+..-. ++++.++.|+..|. ++..-.+-+..+......+..+++.+++...+++.
T Consensus 410 l~~L~~qWe~~R~-pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~ 475 (594)
T PF05667_consen 410 LVELAQQWEKHRA-PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVK 475 (594)
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566877222 47788888887665 45556677778888888888999999998777554
No 102
>KOG0964|consensus
Probab=42.77 E-value=5e+02 Score=30.63 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=56.4
Q ss_pred CCCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHH
Q psy9591 322 ALVPRTLERLIALESLHAQAG----NFATLLKELESVQVDLASNLTNNQSLLTSLEG----KMGSDVERIKQDVKALDEK 393 (399)
Q Consensus 322 ~~LP~ll~RLrsL~~LH~~Aa----~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~----~~~~N~~~v~~nv~~Le~R 393 (399)
.-|-.+.++|+.+..+...|- +|+..=..|-.+|+++...=+...++++.++. ++......|..||..+=.|
T Consensus 956 kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~~ 1035 (1200)
T KOG0964|consen 956 KKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFSEVFSR 1035 (1200)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788999988887764 57777778888888888888888888888864 5777778888888877555
Q ss_pred H
Q psy9591 394 I 394 (399)
Q Consensus 394 i 394 (399)
+
T Consensus 1036 L 1036 (1200)
T KOG0964|consen 1036 L 1036 (1200)
T ss_pred h
Confidence 4
No 103
>KOG0250|consensus
Probab=42.25 E-value=2.8e+02 Score=32.66 Aligned_cols=159 Identities=15% Similarity=0.273 Sum_probs=95.4
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcC------CCchhH
Q psy9591 203 TAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLID------AAHCDA 276 (399)
Q Consensus 203 ~~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~------~~~Ld~ 276 (399)
...++.++..+++..|+.+|.-.. -...-. .--..+...+..+.+.++-+. -+.++.
T Consensus 307 ~~~k~~~~r~k~teiea~i~~~~~--e~~~~d---------------~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~ 369 (1074)
T KOG0250|consen 307 KQGKIEEARQKLTEIEAKIGELKD--EVDAQD---------------EEIEEARKDLDDLRREVNDLKEEIREIENSIRK 369 (1074)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHH--hhhhhh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888875431 011000 011234444444444444443 234444
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy9591 277 YDARITHLSNKLDKIIEKA-NSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLI-ALESLHAQAGNFATLLKELESV 354 (399)
Q Consensus 277 i~~Rl~~L~~ele~l~~kk-~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLr-sL~~LH~~Aa~f~~~L~~Le~~ 354 (399)
+..++..+...+..+.+.- ....+.-++.+.|++.|=.-..+++ .++.+|+ .++.+|..+-.--.-+.+++..
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e-----~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~ 444 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLE-----EQINSLREELNEVKEKAKEEEEEKEHIEGE 444 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4444444444444443322 1111233455556666555554443 3777776 4788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHhHHHH
Q psy9591 355 QVDLASNLTNNQSLLTSLEGK-------MGSDVERI 383 (399)
Q Consensus 355 q~~l~~~l~~~~~~L~~ve~~-------~~~N~~~v 383 (399)
...+...+.+...-|+.+..+ |+.||-.+
T Consensus 445 i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~l 480 (1074)
T KOG0250|consen 445 ILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQL 480 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHH
Confidence 999999999999888888764 66666554
No 104
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.15 E-value=3.6e+02 Score=26.78 Aligned_cols=82 Identities=12% Similarity=0.181 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHh------hhhcCC-CCCchH
Q psy9591 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYEL------SRSVDS-ALVPRT 327 (399)
Q Consensus 255 L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~------l~~~~~-~~LP~l 327 (399)
|..-|+.+..++.=+ ...+|.....|+.|.++++.+.+.=.. ...-...+...+|.. +.-|=. ..+-.+
T Consensus 57 L~~qi~~~~~k~~~~-~~~i~~~~~eik~l~~eI~~~~~~I~~---r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~ 132 (265)
T COG3883 57 LDNQIEEIQSKIDEL-QKEIDQSKAEIKKLQKEIAELKENIVE---RQELLKKRARAMQVNGTATSYIDVILNSKSFSDL 132 (265)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHH
Confidence 444444444444333 335666666777777777666541100 001233344555543 333323 888999
Q ss_pred HHHHHHHHHHHHH
Q psy9591 328 LERLIALESLHAQ 340 (399)
Q Consensus 328 l~RLrsL~~LH~~ 340 (399)
++|+-.+..|-..
T Consensus 133 IsRvtAi~~iv~a 145 (265)
T COG3883 133 ISRVTAISVIVDA 145 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887654
No 105
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=42.12 E-value=2.6e+02 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=16.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 322 ALVPRTLERLIALESLHAQAGNFATLLKEL 351 (399)
Q Consensus 322 ~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~L 351 (399)
|.+|.|--. .|..|+.+|...++.++.|
T Consensus 44 ~~~P~id~~--~L~~LE~~a~~ia~svd~l 71 (149)
T PF10157_consen 44 PSIPPIDPA--VLHDLERDAQAIAESVDSL 71 (149)
T ss_pred CCCCcccHH--HHHHHHHHHHHHHHHHHHH
Confidence 445654333 5666777776666666554
No 106
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=42.04 E-value=2.8e+02 Score=28.64 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 332 IALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG---------KMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 332 rsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~---------~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
..|..++....+.++.+..+....++|..+|++...-++.=.. .+++.+..++.-+..++=||.=|
T Consensus 280 ~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVl 354 (359)
T PF10498_consen 280 DELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVL 354 (359)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 4456666666777777777777777777777666555544332 37777888888888888887644
No 107
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=41.43 E-value=66 Score=32.77 Aligned_cols=123 Identities=16% Similarity=0.245 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHH
Q psy9591 253 NSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLI 332 (399)
Q Consensus 253 ~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLr 332 (399)
.+|.+.|..|+..++-| ...+..+..+|..|..+++.++..=......-..-..+|..|-..+
T Consensus 31 s~I~eRLsaLEssv~sL-~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl---------------- 93 (326)
T PF04582_consen 31 SPIRERLSALESSVASL-SDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSL---------------- 93 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 35666666666666666 3346666667766766666665211110011112222333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHH
Q psy9591 333 ALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG---KMGSDVERIKQDVKALDEKI 394 (399)
Q Consensus 333 sL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~---~~~~N~~~v~~nv~~Le~Ri 394 (399)
..|-......+..++..+....+|+..+..+..-+.++.. ++.-|+.-++.+|+.||.+.
T Consensus 94 --~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~ 156 (326)
T PF04582_consen 94 --SSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGS 156 (326)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred --HHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCC
Confidence 3333444455556666666666666666666666666654 47778888888888888764
No 108
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=41.39 E-value=4.1 Score=37.48 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=8.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy9591 82 EKETPLQKYQRLQCELKELMDEV 104 (399)
Q Consensus 82 ~~ET~~qKl~RL~rEveEL~eE~ 104 (399)
++|.+...+|||+-|+.+|++|+
T Consensus 25 EKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999
No 109
>KOG2196|consensus
Probab=41.31 E-value=2.7e+02 Score=27.40 Aligned_cols=82 Identities=18% Similarity=0.339 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHhhhhcCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---------
Q psy9591 304 ERDQRVNELYELSRSVDS-ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTN--NQSLLTS--------- 371 (399)
Q Consensus 304 ~~~~KI~eLY~~l~~~~~-~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~--~~~~L~~--------- 371 (399)
+...||..||.-+...+. . +.||.+.........+||.....++..++. |-..+..
T Consensus 110 ~ngekI~~Ly~e~~~vk~~q------------krLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty 177 (254)
T KOG2196|consen 110 ENGEKISGLYNEVVKVKLDQ------------KRLDQELEFILSQQQELEDLLDPLETKLELQSGHTYLSRADVEREQTY 177 (254)
T ss_pred hCcHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHH
Confidence 556688888887776655 2 556665555555555555555544444443 2111211
Q ss_pred -HHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 372 -LEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 372 -ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
|=.++.+|++.+..+++.|-.-|...
T Consensus 178 ~~a~nidsqLk~l~~dL~~ii~~lN~~ 204 (254)
T KOG2196|consen 178 KMAENIDSQLKRLSEDLKQIIKSLNTM 204 (254)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 11246667777777766665555443
No 110
>KOG0978|consensus
Probab=41.16 E-value=5.8e+02 Score=28.87 Aligned_cols=117 Identities=20% Similarity=0.223 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 282 THLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS---ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDL 358 (399)
Q Consensus 282 ~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~---~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l 358 (399)
+.|..++..+.+.-............+|-.|-+.+..+.. .+.-.+-.+=.+|...-..|++..+.+..|...+...
T Consensus 499 k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~ 578 (698)
T KOG0978|consen 499 KLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKS 578 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444432222111234566678888888887766 6666667777778888888999999999988888888
Q ss_pred HHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 359 ASNLTNNQSLLTSLEG---KMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 359 ~~~l~~~~~~L~~ve~---~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
...+++.+..+...+. .|..|...++.-+..|-.++..++
T Consensus 579 ~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 579 EAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888877777664 377888888888877777776654
No 111
>PF03902 Gal4_dimer: Gal4-like dimerisation domain; InterPro: IPR005600 The DNA binding domain (residues 1 to 147) of the yeast transcriptional activator GAL4 exists in solution in dimeric form, with the region responsible for dimerisation somewhere between residues 74 and 147. Experimental studies confirmed that the 'hydrophobic region' of the protein (residues 54-97, which contains a larger proportion of alpha-helix), is essential for dimerisation []. ; PDB: 1HBW_B 1D66_A 3COQ_A.
Probab=41.15 E-value=29 Score=26.42 Aligned_cols=19 Identities=63% Similarity=0.770 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHhCC
Q psy9591 205 AKLTSLEQRLIKLENLLGE 223 (399)
Q Consensus 205 ~~ia~LE~RL~~LE~~lG~ 223 (399)
+.+.+.|.||..||.+++-
T Consensus 3 aHLTeVE~Rl~~lE~ll~~ 21 (57)
T PF03902_consen 3 AHLTEVENRLEKLEQLLRE 21 (57)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999985
No 112
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=40.97 E-value=3.1e+02 Score=25.65 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=29.8
Q ss_pred CCCCCChHHHHHHHHHHHhhcCC-----C-----chhHHHHHHHHHHHHHHHHHH
Q psy9591 249 GGGHNSLVENTDWLRAQINLIDA-----A-----HCDAYDARITHLSNKLDKIIE 293 (399)
Q Consensus 249 ~~~~~~L~~~l~~L~~qlslL~~-----~-----~Ld~i~~Rl~~L~~ele~l~~ 293 (399)
+.+|.|+......+..-+.+|.. . ..+....+|..+-.+.+.+..
T Consensus 10 ~~s~~~l~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~I~~lE~eaD~i~~ 64 (216)
T TIGR00153 10 GHERDNERQHIEKVGECVQLLIKSFELLKSGNNEKDEELRKEIIEIEHEADEIKR 64 (216)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444677766666666666641 1 456677888888888888864
No 113
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.85 E-value=2.8e+02 Score=26.74 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy9591 274 CDAYDARITHLSNKLDKII 292 (399)
Q Consensus 274 Ld~i~~Rl~~L~~ele~l~ 292 (399)
.|.|..|++.-..=.+.+.
T Consensus 7 ~~~L~~r~k~g~~~~~el~ 25 (261)
T cd07648 7 FDVLYHNMKHGQIAVKELA 25 (261)
T ss_pred hHHHHHHHHhHHHHHHHHH
Confidence 5566666665544444444
No 114
>PRK09039 hypothetical protein; Validated
Probab=40.77 E-value=4.1e+02 Score=27.07 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHhhcC------CCchhHHHHHHHHHHHHHHHHHH
Q psy9591 255 LVENTDWLRAQINLID------AAHCDAYDARITHLSNKLDKIIE 293 (399)
Q Consensus 255 L~~~l~~L~~qlslL~------~~~Ld~i~~Rl~~L~~ele~l~~ 293 (399)
.-..|+.|+.+|+-|. ......++.+|..|...++.+..
T Consensus 51 ~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~ 95 (343)
T PRK09039 51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEA 95 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344555555555543 23445555566666665555443
No 115
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=39.95 E-value=1.6e+02 Score=31.25 Aligned_cols=74 Identities=15% Similarity=0.297 Sum_probs=53.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH---------HHHHHhHHHHHH
Q psy9591 324 VPRTLERLIALESLHAQAGNFATLLKEL---------ESVQVDLASNLTNNQSLLTSLE---------GKMGSDVERIKQ 385 (399)
Q Consensus 324 LP~ll~RLrsL~~LH~~Aa~f~~~L~~L---------e~~q~~l~~~l~~~~~~L~~ve---------~~~~~N~~~v~~ 385 (399)
+-.+.+||..|..+-....+|...+... .+...++..++...=..+..+. ..|.........
T Consensus 226 ~~~f~~Rl~~i~~i~~~~~~f~~l~~~~~~g~~g~~~~~~~~~i~~~~~~~~~~~~~~~yd~ld~~~~~~w~~~~~~f~~ 305 (579)
T PF08385_consen 226 LDAFKERLEDIKEIRETHEQFSRLLKSEFGGLRGKELSEGIDEIEEEFNEAYEPFKSLDYDILDVSNEEEWERDFSEFRE 305 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCCCcchhhHHHHHHHHHH
Confidence 4578899999999999999998777666 4444444444444333333322 389999999999
Q ss_pred HHHHHHHHHHhh
Q psy9591 386 DVKALDEKIKAL 397 (399)
Q Consensus 386 nv~~Le~Ri~~L 397 (399)
.+..||.||...
T Consensus 306 ~i~~lE~~l~~~ 317 (579)
T PF08385_consen 306 RIEDLERRLANI 317 (579)
T ss_pred HHHHHHHHHHHH
Confidence 999999999764
No 116
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.74 E-value=1.1e+02 Score=26.17 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 334 LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLL 369 (399)
Q Consensus 334 L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L 369 (399)
++.++.+...+.+.+..|...+.+....+...+.+-
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00584 8 LQVLQQEIEELQQELARLNEAIAEYEQAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777777888887777777776666655554
No 117
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=39.59 E-value=68 Score=29.09 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q psy9591 86 PLQKYQRLQCELKELMDEVSQIKEP 110 (399)
Q Consensus 86 ~~qKl~RL~rEveEL~eE~~~~k~~ 110 (399)
...++..|+.|+.++++|+..+..+
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~q 62 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQ 62 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TT
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcH
Confidence 6788899999999999999876544
No 118
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.45 E-value=95 Score=29.56 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 351 LESVQVDLASNLT-NNQSLLTSLEG-KMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 351 Le~~q~~l~~~l~-~~~~~L~~ve~-~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
+.+.|..+...|. .|+.+....|- .|-+-+..++.-+..|++|+++|.
T Consensus 150 ~~~~q~~~Ae~iTEE~r~~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe 199 (204)
T COG3165 150 LKQLQRNLAEAITEEWRMAVGPLELADFAEEVDALRDAVERLEARLERLE 199 (204)
T ss_pred HHHHHHHHHHHhcchhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 48888888885 499999999999999999999985
No 119
>PRK10869 recombination and repair protein; Provisional
Probab=39.25 E-value=5.4e+02 Score=27.99 Aligned_cols=125 Identities=6% Similarity=-0.042 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHHHHHHHHHh---cCCCCCCCchhHHHHHHHHHhhhhcCC---CCCc
Q psy9591 254 SLVENTDWLRAQINLID--AAHCDAYDARITHLSNKLDKIIEK---ANSVDPKDSERDQRVNELYELSRSVDS---ALVP 325 (399)
Q Consensus 254 ~L~~~l~~L~~qlslL~--~~~Ld~i~~Rl~~L~~ele~l~~k---k~~~~~~~~~~~~KI~eLY~~l~~~~~---~~LP 325 (399)
+++..|....+.+.-|. .+.+..+..++..+...++.+... ....-.-|++....|++=...+.++.. +.+.
T Consensus 241 ~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~ 320 (553)
T PRK10869 241 NILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPE 320 (553)
T ss_pred cHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 35555555555555443 356677777888877777777531 111012356666666655555555555 7889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 326 RTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGS 378 (399)
Q Consensus 326 ~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~ 378 (399)
.|+.....++.=.....++...+..|++....+...+...-.-|...-.....
T Consensus 321 ~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~ 373 (553)
T PRK10869 321 ELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAK 373 (553)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888888888877777766554333
No 120
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=39.21 E-value=2.8e+02 Score=25.53 Aligned_cols=88 Identities=16% Similarity=0.297 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhhhhc-CC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9591 304 ERDQRVNELYELSRSV-DS---ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSD 379 (399)
Q Consensus 304 ~~~~KI~eLY~~l~~~-~~---~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N 379 (399)
...++.+.-|+.|-.+ +. ..+...+++|+. .+......+...+..|..-+..|.............+...+..+
T Consensus 84 ~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~--~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~ 161 (184)
T PF05791_consen 84 NYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQD--QIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGE 161 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 3444557777765554 22 333444444432 33333333334444444444444444444444444444443333
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9591 380 VERIKQDVKALDEKIKAL 397 (399)
Q Consensus 380 ~~~v~~nv~~Le~Ri~~L 397 (399)
.+.|..|+.+|..+
T Consensus 162 ----~g~I~~L~~~I~~~ 175 (184)
T PF05791_consen 162 ----NGDIPQLQKQIENL 175 (184)
T ss_dssp ----T--HHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHH
Confidence 34556666666654
No 121
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.08 E-value=6.5e+02 Score=28.89 Aligned_cols=101 Identities=16% Similarity=0.215 Sum_probs=57.1
Q ss_pred CchhHHHHHHHHHHHHHHHHH-HhcCCCCCCCchhHHH---HHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy9591 272 AHCDAYDARITHLSNKLDKII-EKANSVDPKDSERDQR---VNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATL 347 (399)
Q Consensus 272 ~~Ld~i~~Rl~~L~~ele~l~-~kk~~~~~~~~~~~~K---I~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~~ 347 (399)
..||+...|++.|..++-..- ..+..-+...++...- |-+-...|..+...-||--+.|.+.|=... .-.+.++.
T Consensus 783 krIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef~arF~~llN~~-S~~~v~q~ 861 (1104)
T COG4913 783 KRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPEFLARFQELLNRS-SDDGVTQL 861 (1104)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc-ccchHHHH
Confidence 457777777777776655332 2222211122222222 333333444444477888888877764432 23456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 348 LKELESVQVDLASNLTNNQSLLTSLE 373 (399)
Q Consensus 348 L~~Le~~q~~l~~~l~~~~~~L~~ve 373 (399)
+.+|+-....|...|+-.+..|..++
T Consensus 862 ~~~L~~er~~IeERIe~IN~SL~~vd 887 (1104)
T COG4913 862 LSHLDHERALIEERIEAINDSLRRVD 887 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77777777777777777666666654
No 122
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.04 E-value=5.3e+02 Score=27.89 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCc-------------hhHHHHHHHHHhhhhc--
Q psy9591 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDS-------------ERDQRVNELYELSRSV-- 319 (399)
Q Consensus 255 L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~-------------~~~~KI~eLY~~l~~~-- 319 (399)
+...+..+.+++.-+ ..+...+.+|+..+..+++.|....-. +.++. .-...+...|..|..=
T Consensus 166 ~~~~~~~~~~~L~~l-~~~~~~~~~eld~L~~ql~ELe~~~l~-~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~ 243 (563)
T TIGR00634 166 LYQAWLKARQQLKDR-QQKEQELAQRLDFLQFQLEELEEADLQ-PGEDEALEAEQQRLSNLEKLRELSQNALAALRGDVD 243 (563)
T ss_pred HHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhCCcC-CCcHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCcc
Confidence 455555555555555 234466678888888888888653332 11111 1122344444444221
Q ss_pred --C-C--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 320 --D-S--ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTN 364 (399)
Q Consensus 320 --~-~--~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~ 364 (399)
. + ..|-.++..|..+ ++.....+.+.|.++--...++..++..
T Consensus 244 ~~~~~~~~~l~~~~~~l~~~--~d~~~~~~~~~l~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 244 VQEGSLLEGLGEAQLALASV--IDGSLRELAEQVGNALTEVEEATRELQN 291 (563)
T ss_pred ccccCHHHHHHHHHHHHHHh--hhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1 2333334444444 5555566666666555555555555554
No 123
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=38.91 E-value=83 Score=30.75 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=41.0
Q ss_pred HHHHHHHhh--hhcCC-CCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 308 RVNELYELS--RSVDS-ALVPRTLERLIA-LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLL 369 (399)
Q Consensus 308 KI~eLY~~l--~~~~~-~~LP~ll~RLrs-L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L 369 (399)
.....|..- |++.+ |.|..++.||++ |..+-....+....|..|.....+|...-+..+..|
T Consensus 187 ~~~~~~~~~~ip~~tpLP~L~~~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l 252 (254)
T PF15458_consen 187 DEKDRYKPPPIPKITPLPSLSECLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELL 252 (254)
T ss_pred cchhccCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556555 88888 999999999874 566666666666666666666666665555554444
No 124
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.73 E-value=2.6e+02 Score=24.11 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 331 LIALESLHAQAGNFATLLKELESVQVDLASNLTNNQ 366 (399)
Q Consensus 331 LrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~ 366 (399)
+..++.+-.+...+......++....+....++..+
T Consensus 13 ~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 13 LAQLQQLQQQLERLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555444444433
No 125
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=38.45 E-value=1.8e+02 Score=23.83 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHhHHHHHHHHHHHHHHHHhh
Q psy9591 344 FATLLKELESVQVDLASNLTNNQSLLTSLEGK---M---GSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 344 f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~---~---~~N~~~v~~nv~~Le~Ri~~L 397 (399)
|...-.+|......+..+|...+..+..+|.+ | ..-+..=..||..+..+|..+
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 33344445555555555555555566666654 2 222334456777777777765
No 126
>PF12086 DUF3563: Protein of unknown function (DUF3563); InterPro: IPR021946 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 50 amino acids in length. This protein has conserved AYL and DLE sequence motifs.
Probab=38.37 E-value=25 Score=26.99 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=17.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHH
Q psy9591 199 AQLNTAAKLTSLEQRLIKLEN 219 (399)
Q Consensus 199 ~~~~~~~~ia~LE~RL~~LE~ 219 (399)
+=+.+...+++||+|+..||.
T Consensus 25 aYLA~s~D~~DLErRmr~le~ 45 (59)
T PF12086_consen 25 AYLAQSTDIYDLERRMRELED 45 (59)
T ss_pred HHHHhcccHHHHHHHHHHHhh
Confidence 336678899999999999994
No 127
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=37.87 E-value=1.8e+02 Score=24.10 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 331 LIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMG 377 (399)
Q Consensus 331 LrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~ 377 (399)
+..|+....+-....+.|+.||.+.+.|.......++-...+|.+|+
T Consensus 51 ~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 51 LEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444555555555555555666666555555555555555554
No 128
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=37.63 E-value=59 Score=30.70 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccccccccchhhcCCHH---HHHHHHHHHHhhhc
Q psy9591 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQ---QIEELVSQVSAIKL 138 (399)
Q Consensus 84 ET~~qKl~RL~rEveEL~eE~~~~k~~~~~~~~~~~~~~~~---~l~~L~~~L~~L~~ 138 (399)
--+.|||-||+.|++.-..|+.+++....... .+++ .++.-...|.+|+.
T Consensus 105 RhL~qrYdRmRQeaE~qa~eV~RRq~k~res~-----~~~e~~~KL~~AE~Kl~elks 157 (209)
T cd07607 105 RHLKQRYDRLRQEVEAQAAEVARRRSKDKESG-----GNPDNAAKLQSAESKLDELKS 157 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----CChHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999998876531111 1222 45555556666654
No 129
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=37.31 E-value=2.9e+02 Score=24.23 Aligned_cols=20 Identities=45% Similarity=0.478 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHhCCCC
Q psy9591 206 KLTSLEQRLIKLENLLGEHS 225 (399)
Q Consensus 206 ~ia~LE~RL~~LE~~lG~~~ 225 (399)
++..|..++..|+..|+...
T Consensus 6 ~~~~l~~~~~~l~~~l~~~~ 25 (202)
T PF01442_consen 6 RLDSLSSRTEELEERLEELS 25 (202)
T ss_dssp HHHHHHHHHHHHHHCHCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777654
No 130
>PRK04325 hypothetical protein; Provisional
Probab=36.12 E-value=2.2e+02 Score=22.54 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 341 AGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK 375 (399)
Q Consensus 341 Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~ 375 (399)
+..+..+|..||...+-....|+..+..+..-+..
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~ 38 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQT 38 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777777777666643
No 131
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=35.98 E-value=5.9e+02 Score=27.53 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH---hcCCCCCCCchhHHHHHHHHHhhhhcCC---CCCchHH
Q psy9591 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIE---KANSVDPKDSERDQRVNELYELSRSVDS---ALVPRTL 328 (399)
Q Consensus 255 L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~---kk~~~~~~~~~~~~KI~eLY~~l~~~~~---~~LP~ll 328 (399)
++..|....+.+.-+-.+.+..+..++......++.+.. .....-..|++.-..|++=...+..+.. +.+-.++
T Consensus 249 ~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~ 328 (563)
T TIGR00634 249 LLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVL 328 (563)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 455555555555443344566666677776666666653 1111012344444444443333333333 4556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 329 ERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL 372 (399)
Q Consensus 329 ~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~v 372 (399)
.++..++.==.........+..|++....+...+...-..|...
T Consensus 329 ~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 329 EYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666554444444445555555555555555555544444444
No 132
>KOG0250|consensus
Probab=35.97 E-value=7.6e+02 Score=29.33 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhhc
Q psy9591 125 QIEELVSQVSAIKL 138 (399)
Q Consensus 125 ~l~~L~~~L~~L~~ 138 (399)
..++|...|+.+..
T Consensus 160 Kk~dl~~vv~~f~I 173 (1074)
T KOG0250|consen 160 KKEDLDTVVDHFNI 173 (1074)
T ss_pred cHHHHHHHHHHhCc
Confidence 45567777777754
No 133
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=35.74 E-value=1.4e+02 Score=30.16 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 338 HAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 338 H~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
|.+|-+|+..|+++.....+|... -|........+++..-+.-|.+|+.+|+.|+
T Consensus 47 r~~A~~fA~~ld~~~~kl~~Ms~~------ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~ 101 (301)
T PF06120_consen 47 RQEAIEFADSLDELKEKLKEMSST------QLRANIAKAEESIAAQKRAIEDLQKKIDSLK 101 (301)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 134
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=35.69 E-value=4e+02 Score=25.42 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 340 QAGNFATLLKELESVQVDLASNLTNNQSLLTSL---EGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 340 ~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~v---e~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
+-.+....|..++..-+++.....+....+..+ |++++.-+.-...+|...++|..+|
T Consensus 77 erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 77 ERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666555555555544333 4445555666666666666666555
No 135
>PRK01156 chromosome segregation protein; Provisional
Probab=35.59 E-value=4.1e+02 Score=30.29 Aligned_cols=9 Identities=0% Similarity=0.029 Sum_probs=3.4
Q ss_pred hHHHHHHHH
Q psy9591 255 LVENTDWLR 263 (399)
Q Consensus 255 L~~~l~~L~ 263 (399)
+..-+..+.
T Consensus 527 l~~~l~~~~ 535 (895)
T PRK01156 527 ARADLEDIK 535 (895)
T ss_pred HHHHHHHHH
Confidence 333333333
No 136
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=35.08 E-value=3.9e+02 Score=25.11 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=56.6
Q ss_pred hhhcCC--CCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhHH
Q psy9591 316 SRSVDS--ALVPRTLERLI-ALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG-----------KMGSDVE 381 (399)
Q Consensus 316 l~~~~~--~~LP~ll~RLr-sL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~-----------~~~~N~~ 381 (399)
|.+++. .-||.++.+.. -++.|+...-..-.....++....+...+|...+.-+..++. .+...+.
T Consensus 49 L~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~ 128 (194)
T PF15619_consen 49 LQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLS 128 (194)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Confidence 455555 78899998875 477778888888888888888888888887777777776654 2445555
Q ss_pred HHHHHHHHHHHHHHhh
Q psy9591 382 RIKQDVKALDEKIKAL 397 (399)
Q Consensus 382 ~v~~nv~~Le~Ri~~L 397 (399)
.++..+..=+.+|..|
T Consensus 129 ~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 129 QLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555554
No 137
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=34.42 E-value=4.7e+02 Score=27.23 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=19.9
Q ss_pred cchhHHHhhhhhhHHHHHHHHHHHHHHhC
Q psy9591 194 LQSQQAQLNTAAKLTSLEQRLIKLENLLG 222 (399)
Q Consensus 194 ~~~~~~~~~~~~~ia~LE~RL~~LE~~lG 222 (399)
.+|+.+.---.....++..+|..++..|-
T Consensus 249 ~TPtaaae~~~~~~~e~~q~Ld~l~~rL~ 277 (438)
T PRK00286 249 PTPTAAAELAVPDRAELLQRLQQLQQRLA 277 (438)
T ss_pred CChHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 46777665566677777777777777663
No 138
>KOG0964|consensus
Probab=34.04 E-value=4.8e+02 Score=30.71 Aligned_cols=95 Identities=15% Similarity=0.217 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC---CCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 273 HCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS---ALVPRTLERLIALESLHAQAGNFATLLK 349 (399)
Q Consensus 273 ~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~---~~LP~ll~RLrsL~~LH~~Aa~f~~~L~ 349 (399)
+++.....+..|...++.+- .. -.+.++||.+|-+-+++++. ...-..-.=.+.|+++..+-...-.++.
T Consensus 672 ~~~~~~~~~~~l~~~L~~~r---~~----i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~ 744 (1200)
T KOG0964|consen 672 NVNESRSELKELQESLDEVR---NE----IEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLE 744 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 34444445555555555432 11 23566777777777777766 2222222222334444444334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 350 ELESVQVDLASNLTNNQSLLTSLEG 374 (399)
Q Consensus 350 ~Le~~q~~l~~~l~~~~~~L~~ve~ 374 (399)
........+...+...+...+..|.
T Consensus 745 ~k~~~Le~i~~~l~~~~~~~~~~e~ 769 (1200)
T KOG0964|consen 745 PKGKELEEIKTSLHKLESQSNYFES 769 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4444444444444444444444333
No 139
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.97 E-value=2.9e+02 Score=23.27 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy9591 335 ESLHAQAGNFATLLKELESVQVDL--ASNLTNNQSLLTSLE 373 (399)
Q Consensus 335 ~~LH~~Aa~f~~~L~~Le~~q~~l--~~~l~~~~~~L~~ve 373 (399)
..|++....-..+|+.+|+....| ..++...+-.|..|+
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 344455555566666666666666 666666666666555
No 140
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=33.94 E-value=6.7e+02 Score=27.50 Aligned_cols=110 Identities=19% Similarity=0.287 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhc-CCC-chh--HHHH
Q psy9591 204 AAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLI-DAA-HCD--AYDA 279 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL-~~~-~Ld--~i~~ 279 (399)
.--+...+.-+..|++.+-.- |.|- . .....|-.-+++|..=.-=+ ..+ +|+ .|.+
T Consensus 196 ~evl~~~ee~~~~L~~~~e~I------P~L~---~-----------e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~ 255 (570)
T COG4477 196 REVLEEAEEHMIALRSIMERI------PSLL---A-----------ELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDS 255 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHH---H-----------HHHhhchHHHHHHHHHHHHHHHccCCcccccHHH
Confidence 445677888888888887443 3332 1 12234445555554433322 111 222 2445
Q ss_pred HHHHHHHHHHHHHHhcCCCC-----CCCchhHHHHHHHHHhhhh-------cCC--CCCchHHHHHHH
Q psy9591 280 RITHLSNKLDKIIEKANSVD-----PKDSERDQRVNELYELSRS-------VDS--ALVPRTLERLIA 333 (399)
Q Consensus 280 Rl~~L~~ele~l~~kk~~~~-----~~~~~~~~KI~eLY~~l~~-------~~~--~~LP~ll~RLrs 333 (399)
|+..|...+......=.... .....-..||+.||+++.+ +.. |.||.-+++++.
T Consensus 256 ~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke 323 (570)
T COG4477 256 RLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKE 323 (570)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 66666555554332110000 1223567799999999976 222 888888888876
No 141
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.79 E-value=4e+02 Score=24.93 Aligned_cols=57 Identities=25% Similarity=0.176 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 304 ERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSL 368 (399)
Q Consensus 304 ~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~ 368 (399)
.-..+|++|..+-... ...+...+.++....+-......+|....++...|-..+..
T Consensus 90 ~l~~RL~kLL~lk~~~--------~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 90 FLRSRLNKLLSLKDDQ--------EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4445566644433322 23344445555555555445555555555555555554443
No 142
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=33.20 E-value=7.3e+02 Score=28.23 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Q psy9591 336 SLHAQAGNFATLLKELESVQVDLAS------NLTNNQSLLTSLEGKMGS-DVERIKQDVKALDEKIK 395 (399)
Q Consensus 336 ~LH~~Aa~f~~~L~~Le~~q~~l~~------~l~~~~~~L~~ve~~~~~-N~~~v~~nv~~Le~Ri~ 395 (399)
.++.+.+.....|.+|++.+..|+. +-.+|..+...|+..|.+ ++..|-..+..+..-+.
T Consensus 95 ~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~ 161 (766)
T PF10191_consen 95 AVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLA 161 (766)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4455566666667777777766654 345677778888777665 35555555544444433
No 143
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=33.19 E-value=4.1e+02 Score=28.91 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHhHHHHHHHHHHHHHHHHhh
Q psy9591 336 SLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG-------K-------MGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 336 ~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~-------~-------~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
.+|.+.......|...++....+..+|+....-+..+|+ + |.+.+-.++..+..-.+.|+.|
T Consensus 438 ~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 438 HFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666667776666666666666555555444443 3 5555555566666556666655
No 144
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=33.12 E-value=3.4e+02 Score=25.87 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9591 365 NQSLLTSLEGKMGSDVERIKQDVKALDEKIKA 396 (399)
Q Consensus 365 ~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~ 396 (399)
|.++-..++..+-.-+.....-+..+..||.+
T Consensus 81 ~~~l~~~l~~~Vl~Pl~~~~s~f~~i~k~I~K 112 (211)
T cd07588 81 WNDLEEKLSDQVLGPLTAYQSQFPEVKKRIAK 112 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555666666666666666654
No 145
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=33.02 E-value=1.3e+02 Score=22.69 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 365 NQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 365 ~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
.+.+|+.++..|..=-..|-+.+.+.-.||..|
T Consensus 8 v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdL 40 (54)
T PF06825_consen 8 VQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355677777776665555666666666666554
No 146
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=32.70 E-value=3.3e+02 Score=29.43 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 334 LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK----------MGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 334 L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~----------~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
|-.--.+|...++.+..|+..-..|..+....+...+.|+.+ |..|++.++..++.|.+.+..|.
T Consensus 283 l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~ 357 (622)
T COG5185 283 LYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELH 357 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334455688999999999999999999999999998888764 67777777777777777776663
No 147
>KOG0804|consensus
Probab=32.38 E-value=6.6e+02 Score=26.96 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 335 ESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 335 ~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
..+.........-+..+...-..|.+...-|..-|+++++..++-.......|.+|++.|..|
T Consensus 385 ~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 385 QQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555666666677777667777777778888888888888888888888888888877654
No 148
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=31.75 E-value=4.4e+02 Score=24.80 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=14.7
Q ss_pred CCChHHHHHHHHHHHhhcC
Q psy9591 252 HNSLVENTDWLRAQINLID 270 (399)
Q Consensus 252 ~~~L~~~l~~L~~qlslL~ 270 (399)
+.....+|-.|..++..|.
T Consensus 22 ~~~~~~AIl~Lk~~~~~L~ 40 (191)
T PTZ00446 22 NDEIYKAILKNREAIDALE 40 (191)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 3458888989998887774
No 149
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=31.70 E-value=5.2e+02 Score=26.01 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 332 IALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLE 373 (399)
Q Consensus 332 rsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve 373 (399)
..|+.+..+-....+.|..|++...++..++...+.-+..++
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777888888888888888888888887666655553
No 150
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=31.54 E-value=2.5e+02 Score=21.79 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 337 LHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG 374 (399)
Q Consensus 337 LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~ 374 (399)
++..--+....++.+|...+.....+++...-|.+++.
T Consensus 11 ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 11 IETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445666666666666666666666666665554
No 151
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.44 E-value=2.8e+02 Score=22.31 Aligned_cols=52 Identities=13% Similarity=0.315 Sum_probs=23.4
Q ss_pred CCchHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy9591 323 LVPRTLERLIALES--------LHAQAGNFATLLKELESVQVD---LASNLTNNQSLLTSLEG 374 (399)
Q Consensus 323 ~LP~ll~RLrsL~~--------LH~~Aa~f~~~L~~Le~~q~~---l~~~l~~~~~~L~~ve~ 374 (399)
.||.+.+=+..++. ++..+...-..|......... |...++.|+.-|..+|+
T Consensus 4 ~lP~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~ 66 (83)
T PF07544_consen 4 FLPLIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEE 66 (83)
T ss_pred ccchHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHH
Confidence 45666655555444 444444444344333333333 33344444444444443
No 152
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.37 E-value=7.4e+02 Score=27.26 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHHHHHHHHHhcCC
Q psy9591 255 LVENTDWLRAQINLID--AAHCDAYDARITHLSNKLDKIIEKANS 297 (399)
Q Consensus 255 L~~~l~~L~~qlslL~--~~~Ld~i~~Rl~~L~~ele~l~~kk~~ 297 (399)
|.++...|.+-+.=|+ |..|+.|+.|+..| ..++.|...
T Consensus 278 l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L----~~l~RKY~~ 318 (557)
T COG0497 278 LEEASEELRAYLDELEFDPNRLEEVEERLFAL----KSLARKYGV 318 (557)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHHHHhCC
Confidence 5555666666666554 66788888887665 345545444
No 153
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=31.15 E-value=46 Score=25.67 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q psy9591 86 PLQKYQRLQCELKELMDEVSQIKEP 110 (399)
Q Consensus 86 ~~qKl~RL~rEveEL~eE~~~~k~~ 110 (399)
+.+|++=||-||+-|+.|+.+-++.
T Consensus 30 l~eRIalLq~EIeRlkAe~~kK~~s 54 (65)
T COG5509 30 LEERIALLQAEIERLKAELAKKKAS 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8899999999999999999765554
No 154
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.05 E-value=4.4e+02 Score=29.78 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 341 AGNFATLLKELESVQVDLASNLTNNQSLLTSLE---GKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 341 Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve---~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
...+..++..|.....+-..+|...++-.+.+. +.+.+.++.+..+=+.|..|++.+
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443 457888888888888899998876
No 155
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.49 E-value=7.7e+02 Score=27.15 Aligned_cols=156 Identities=17% Similarity=0.105 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcC--CCchhHHHHHH
Q psy9591 204 AAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLID--AAHCDAYDARI 281 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~--~~~Ld~i~~Rl 281 (399)
-..+..--+||+..|++..... .....|.+ +..+.+++..|.+-.+.+.-+. ++.+..+...|
T Consensus 207 ~e~L~~e~~rLsn~ekl~~~~~--~a~~~L~g-------------e~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l 271 (557)
T COG0497 207 DEELEEERKRLSNSEKLAEAIQ--NALELLSG-------------EDDTVSALSLLGRALEALEDLSEYDGKLSELAELL 271 (557)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH--HHHHHHhC-------------CCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHH
Confidence 3445677788888888877654 33444431 1234567777766666666443 55777777777
Q ss_pred HHHHHHHHHHHH-hcC--CCCCCCchhHHHHHHHHHhhhhcCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 282 THLSNKLDKIIE-KAN--SVDPKDSERDQRVNELYELSRSVDS---ALVPRTLERLIALESLHAQAGNFATLLKELESVQ 355 (399)
Q Consensus 282 ~~L~~ele~l~~-kk~--~~~~~~~~~~~KI~eLY~~l~~~~~---~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q 355 (399)
....-.++.+.. -+. ..-.-||....+|.+=...|..+.. +.++.+++....+..==+.-.+....+..|+..-
T Consensus 272 ~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~ 351 (557)
T COG0497 272 EEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEV 351 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 766666666653 111 1112456666666654444555544 5567777666665544444555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9591 356 VDLASNLTNNQSLLTSLEG 374 (399)
Q Consensus 356 ~~l~~~l~~~~~~L~~ve~ 374 (399)
..+..++...-..|...-.
T Consensus 352 ~~l~~~~~~~A~~Ls~~R~ 370 (557)
T COG0497 352 KKLKAELLEAAEALSAIRK 370 (557)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666665555555554443
No 156
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.47 E-value=5.3e+02 Score=25.87 Aligned_cols=12 Identities=50% Similarity=0.733 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhh
Q psy9591 386 DVKALDEKIKAL 397 (399)
Q Consensus 386 nv~~Le~Ri~~L 397 (399)
.|..|-.++..|
T Consensus 277 Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 277 EVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHH
Confidence 344455544444
No 157
>KOG2391|consensus
Probab=30.04 E-value=3.3e+02 Score=28.05 Aligned_cols=53 Identities=11% Similarity=0.205 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHH
Q psy9591 337 LHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG---KMGSDVERIKQDVKA 389 (399)
Q Consensus 337 LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~---~~~~N~~~v~~nv~~ 389 (399)
.-+++.+...-...|..+-.++....+..+...+.+|+ .+..|.++.+.|++.
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34445555555566666666666666666666666665 488999999999986
No 158
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=30.04 E-value=5.7e+02 Score=30.56 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcC------------CCchhHHHHHHHHHHHHHHHHHHhcCCCCC--CCchhHHHHHHHHHhhhhcCC-
Q psy9591 257 ENTDWLRAQINLID------------AAHCDAYDARITHLSNKLDKIIEKANSVDP--KDSERDQRVNELYELSRSVDS- 321 (399)
Q Consensus 257 ~~l~~L~~qlslL~------------~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~--~~~~~~~KI~eLY~~l~~~~~- 321 (399)
.+++.|+.-++.|+ ...++..-+.++.+.++++++......... ...+-++++.+.|..+..+..
T Consensus 45 ~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~ 124 (1109)
T PRK10929 45 EIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQ 124 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHH
Q psy9591 322 -----ALVPRTLERLIALESLHAQAGNFATLLKELESVQVD----------------------LASNLTNNQSLLTSLEG 374 (399)
Q Consensus 322 -----~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~----------------------l~~~l~~~~~~L~~ve~ 374 (399)
..+-.+..+++++- ..+.+..+.+.+++..... +..++..++..+....+
T Consensus 125 l~~~~~~~~~~~~~l~~~p---q~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~ 201 (1109)
T PRK10929 125 AQQEQDRAREISDSLSQLP---QQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANN 201 (1109)
T ss_pred HHHHhhhhHHHHHHHhhch---hhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Q ss_pred H---HHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 375 K---MGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 375 ~---~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
- .....+.....+..+|.+++.|+
T Consensus 202 ~~~L~~~q~dl~~~~~~~l~~~~~~Lq 228 (1109)
T PRK10929 202 RQELARLRSELAKKRSQQLDAYLQALR 228 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 159
>PHA03332 membrane glycoprotein; Provisional
Probab=29.66 E-value=1.9e+02 Score=34.03 Aligned_cols=52 Identities=10% Similarity=0.261 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9591 344 FATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIK 395 (399)
Q Consensus 344 f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~ 395 (399)
....+..+.+....++..+.+.-..|.++-.+|..|+..++++|.+||+.+.
T Consensus 896 mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN 947 (1328)
T PHA03332 896 MASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVN 947 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHH
Confidence 4444555555555556666666666677777788888888888888887664
No 160
>PRK09239 chorismate mutase; Provisional
Probab=29.61 E-value=2.2e+02 Score=24.04 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC--CCCchHHHH
Q psy9591 253 NSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS--ALVPRTLER 330 (399)
Q Consensus 253 ~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~--~~LP~ll~R 330 (399)
+-....|+.|..+|.-||..-++-+.+|+..... +-.+. +..+.+ ..+.....++++.+..+-. .+=|.++++
T Consensus 6 ~~~~~~L~~lR~~ID~ID~eIv~LLa~R~~l~~~-Ia~~K-~~~~~~---i~dp~RE~~vl~~~~~~a~~~gl~p~~~~~ 80 (104)
T PRK09239 6 ARAPAELAALRQSIDNIDAALIHMLAERFKCTQA-VGVLK-AEHGLP---PADPAREAYQIERLRQLAKDANLDPDFAEK 80 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHCCCC---CCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4466778889998888888888888888765432 22221 222222 2344455566666666656 666788888
Q ss_pred HHHHHHHHHHHHH
Q psy9591 331 LIALESLHAQAGN 343 (399)
Q Consensus 331 LrsL~~LH~~Aa~ 343 (399)
+ ++.||++.-.
T Consensus 81 i--~~~ii~esir 91 (104)
T PRK09239 81 F--LNFIIKEVIR 91 (104)
T ss_pred H--HHHHHHHHHH
Confidence 7 4778876543
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.44 E-value=1.3e+02 Score=29.43 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcC------CCchhHHHHHHH
Q psy9591 209 SLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLID------AAHCDAYDARIT 282 (399)
Q Consensus 209 ~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~------~~~Ld~i~~Rl~ 282 (399)
.+|.||..||..+...+ ...+. |...|+.|.+.|.-|. ..+|+.+..|-+
T Consensus 37 ~~~~r~~~le~~~~~~~----~~~~~--------------------l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 37 SVEDRVTQLERISNAHS----QLLTQ--------------------LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 92 (263)
T ss_pred chHHHHHHHHHHHHhhh----HHHHH--------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q psy9591 283 HLSNKLDKI 291 (399)
Q Consensus 283 ~L~~ele~l 291 (399)
.+-.+++.+
T Consensus 93 ~~y~dld~r 101 (263)
T PRK10803 93 QIYLQIDSL 101 (263)
T ss_pred HHHHHHHHH
No 162
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=29.39 E-value=5.1e+02 Score=24.72 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy9591 274 CDAYDARITHLSNKLDKII 292 (399)
Q Consensus 274 Ld~i~~Rl~~L~~ele~l~ 292 (399)
+.++.+||+.|-.+++...
T Consensus 38 ~~~l~rri~~lE~~le~~e 56 (237)
T PF00261_consen 38 VASLQRRIQLLEEELERAE 56 (237)
T ss_dssp HHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 4444444444444444443
No 163
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.25 E-value=5.2e+02 Score=24.78 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9591 337 LHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDE 392 (399)
Q Consensus 337 LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~ 392 (399)
++.+.........+++........++...+.-+..++..-.+=.-.|...+..|+.
T Consensus 61 l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 61 LEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444
No 164
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.14 E-value=1.8e+02 Score=22.08 Aligned_cols=13 Identities=0% Similarity=0.207 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy9591 347 LLKELESVQVDLA 359 (399)
Q Consensus 347 ~L~~Le~~q~~l~ 359 (399)
.++.+.+...+|.
T Consensus 15 ~i~tvk~en~~i~ 27 (55)
T PF05377_consen 15 SINTVKKENEEIS 27 (55)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 165
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=29.07 E-value=1.2e+02 Score=33.28 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=46.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------H---HHHhHHHHHHHHHHHHH
Q psy9591 328 LERLIAL-ESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL--EG---------K---MGSDVERIKQDVKALDE 392 (399)
Q Consensus 328 l~RLrsL-~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~v--e~---------~---~~~N~~~v~~nv~~Le~ 392 (399)
+..++.| ..+|.++....+.|+.|+.+...|+.-+=+|+.+|+=+ ++ . +..|-..|...|++|.+
T Consensus 423 ~~~~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~l~a~~Gg~C~~l~~~CC~y~~~s~~v~~~i~~l~e 502 (561)
T PF00429_consen 423 TQQYRQLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRALDLLTAEQGGLCAALKEECCFYINHSGIVRDSIKKLRE 502 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS-------------HHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhhcCCchhhhCCceEEEECCccchhHHHHHHHH
Confidence 5666666 36888889999999999999999999999999998765 21 1 45677888888888888
Q ss_pred HHHhh
Q psy9591 393 KIKAL 397 (399)
Q Consensus 393 Ri~~L 397 (399)
|+++.
T Consensus 503 ~~~~~ 507 (561)
T PF00429_consen 503 RLEKR 507 (561)
T ss_dssp ---HH
T ss_pred HHHhh
Confidence 87764
No 166
>KOG2211|consensus
Probab=29.02 E-value=8.1e+02 Score=27.73 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=17.2
Q ss_pred CCCChHHHHHHHHHHHhhcC
Q psy9591 251 GHNSLVENTDWLRAQINLID 270 (399)
Q Consensus 251 ~~~~L~~~l~~L~~qlslL~ 270 (399)
.+..|...+++|.++|..++
T Consensus 69 ~s~~ia~q~~~L~q~lr~ld 88 (797)
T KOG2211|consen 69 ESNRIATQCDDLTQKLRELD 88 (797)
T ss_pred hcCCHHHHHHHHHHHHHHHH
Confidence 44678999999999999987
No 167
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.98 E-value=1.1e+03 Score=28.49 Aligned_cols=55 Identities=11% Similarity=0.231 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHhh
Q psy9591 343 NFATLLKELESVQVDLASNLTNNQSLLTSLEGK-----------MGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 343 ~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~-----------~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
........+......+...+.+...+...|+.. +..++..+...+..|+..+..+
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l 996 (1311)
T TIGR00606 931 SKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKI 996 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555554432 3455555577777787777665
No 168
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.95 E-value=3.3e+02 Score=22.49 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9591 279 ARITHLSNKLDKIIEK 294 (399)
Q Consensus 279 ~Rl~~L~~ele~l~~k 294 (399)
..++.|..++..+...
T Consensus 6 ~~~q~l~~~~~~l~~~ 21 (105)
T cd00632 6 AQLQQLQQQLQAYIVQ 21 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555443
No 169
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.79 E-value=3.8e+02 Score=23.06 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 346 TLLKELESVQVDLASNLTNNQSLLT 370 (399)
Q Consensus 346 ~~L~~Le~~q~~l~~~l~~~~~~L~ 370 (399)
..+..|++....+...+++.+.-|.
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 170
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.68 E-value=6.1e+02 Score=25.43 Aligned_cols=131 Identities=18% Similarity=0.273 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHH
Q psy9591 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIAL 334 (399)
Q Consensus 255 L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL 334 (399)
|..-...|...+..|+ ..+..+..|-..|..++..+........ .....++..|-..|...+. .|-.+=+.|
T Consensus 161 L~~D~~~L~~~~~~l~-~~~~~l~~~~~~L~~e~~~Lk~~~~e~~---~~D~~eL~~lr~eL~~~~~----~i~~~k~~l 232 (325)
T PF08317_consen 161 LQEDYAKLDKQLEQLD-ELLPKLRERKAELEEELENLKQLVEEIE---SCDQEELEALRQELAEQKE----EIEAKKKEL 232 (325)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh---hcCHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3344444555555554 5566666777777777777765433211 1222344444433333221 011111123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9591 335 ESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEK 393 (399)
Q Consensus 335 ~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~R 393 (399)
..+-.+-...-+.+..+.....++..+|...+..++....--..-+..++..+..|+..
T Consensus 233 ~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 233 AELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 33333333444444444445555555555554444444333444566777777777653
No 171
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.57 E-value=3.5e+02 Score=22.60 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 333 ALESLHAQAGNFATLLKELESVQVDLASNLTNNQSL 368 (399)
Q Consensus 333 sL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~ 368 (399)
.++.++.+...|.+.+..+...+.++...+...+.+
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00890 7 QLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888888888888887766665554
No 172
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=28.48 E-value=5.9e+02 Score=25.18 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=97.8
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHH-HHHHHHHHHhhcCC---CchhHHHH
Q psy9591 204 AAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVE-NTDWLRAQINLIDA---AHCDAYDA 279 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~-~l~~L~~qlslL~~---~~Ld~i~~ 279 (399)
-++++.|+..+..|++.|.... .-+..|. + -.| -.-|+-. .|..|.++|.=|.. .++|.++.
T Consensus 80 e~~l~~Lq~ql~~l~akI~k~~--~el~~L~---T------YkD---~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e 145 (258)
T PF15397_consen 80 ESKLSKLQQQLEQLDAKIQKTQ--EELNFLS---T------YKD---HEYPVKAVQIANLVRQLQQLKDSQQDELDELNE 145 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH--HHHHHHH---H------Hhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999887765 4455544 1 111 2245555 77888888887753 36777766
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 280 RITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLA 359 (399)
Q Consensus 280 Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~ 359 (399)
-++..+..|+.-. +..+..=|.....+|-.|.=|.++.|+..=..+-.+...|-+.+++++.....+.
T Consensus 146 ~~~~el~~l~~~~------------q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~ 213 (258)
T PF15397_consen 146 MRQMELASLSRKI------------QEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLR 213 (258)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665443 2222233444455555566689999998777888888899999999999999888
Q ss_pred HHHHHHHHHHHHHH
Q psy9591 360 SNLTNNQSLLTSLE 373 (399)
Q Consensus 360 ~~l~~~~~~L~~ve 373 (399)
.+++....-...+-
T Consensus 214 ~eV~~L~~~~~~~R 227 (258)
T PF15397_consen 214 AEVEQLQAQAQDPR 227 (258)
T ss_pred HHHHHHHHhhcchH
Confidence 88888766555443
No 173
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.14 E-value=4.3e+02 Score=23.47 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHH
Q psy9591 258 NTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESL 337 (399)
Q Consensus 258 ~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~L 337 (399)
-|..|.+++..| -..||.+..+|..+...++........ ......||.-|=+-|...+. .|+..
T Consensus 36 EI~sL~~K~~~l-E~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rriq~LEeele~ae~-----------~L~e~ 99 (143)
T PF12718_consen 36 EITSLQKKNQQL-EEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRIQLLEEELEEAEK-----------KLKET 99 (143)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhHHHHHHHHHHHHH-----------HHHHH
Confidence 344466666666 345666666666666666655433322 11333444444444333322 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 338 HAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMG 377 (399)
Q Consensus 338 H~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~ 377 (399)
-....+......+++.....+......|+.=+..++....
T Consensus 100 ~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 100 TEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444555556666666666667777776666665543
No 174
>smart00340 HALZ homeobox associated leucin zipper.
Probab=28.05 E-value=44 Score=23.97 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy9591 84 ETPLQKYQRLQCELKELMD 102 (399)
Q Consensus 84 ET~~qKl~RL~rEveEL~e 102 (399)
|++-+-=.||++||+||+.
T Consensus 15 e~LteeNrRL~ke~~eLra 33 (44)
T smart00340 15 ESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5566666899999999874
No 175
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=27.96 E-value=2.5e+02 Score=26.36 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHhh
Q psy9591 357 DLASNLTNNQSLLTSLEGKMGSDVERIK----------QDVKALDEKIKAL 397 (399)
Q Consensus 357 ~l~~~l~~~~~~L~~ve~~~~~N~~~v~----------~nv~~Le~Ri~~L 397 (399)
+++.-+-+.+.-++.+|..|..+.+.+. ..|.+|++||..|
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l 126 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSL 126 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHH
Confidence 3333444444444444555555544444 4455555555544
No 176
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=27.72 E-value=95 Score=21.96 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHhhh
Q psy9591 121 LSVQQIEELVSQVSAIK 137 (399)
Q Consensus 121 ~~~~~l~~L~~~L~~L~ 137 (399)
.....+-.+++.||.|-
T Consensus 22 l~~~~vl~~Sq~LD~lI 38 (45)
T PF09388_consen 22 LTDPEVLELSQELDKLI 38 (45)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 34567888899998873
No 177
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=27.69 E-value=2.8e+02 Score=21.22 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=42.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9591 322 ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASN----LTNNQSLLTSLEGKMGSDVERIKQDVKALD 391 (399)
Q Consensus 322 ~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~----l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le 391 (399)
..+..+-..++.++.++.+.......+..|...-..|... -...+.-+..++..+..-...+..+...||
T Consensus 31 ~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 31 SDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5556677777778888888888888888887777666333 233444444445555555555544444444
No 178
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=27.67 E-value=6.3e+02 Score=25.28 Aligned_cols=85 Identities=11% Similarity=0.180 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC-CCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy9591 276 AYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS-ALVPRTLERLIALE-SLHAQAGNFATLLKELES 353 (399)
Q Consensus 276 ~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~-~~LP~ll~RLrsL~-~LH~~Aa~f~~~L~~Le~ 353 (399)
.+-.+|+.++.+++.+...|.. .|++|=. .... .+.|.||.-.+... ... + .=|.+.|...+.
T Consensus 190 ~~v~~Lr~~l~~l~~lk~eR~~----------~~~~lk~---~~~~ddI~~~ll~~~~~~~~~~~-e-~lf~~eL~kf~~ 254 (342)
T cd08915 190 EVVSSLRPLLNEVSELEKERER----------FISELEI---KSRNNDILPKLITEYKKNGTTEF-E-DLFEEHLKKFDK 254 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH---HhhhcCCcHHHHHHhhccccchh-H-HHHHHHHHHHhH
Confidence 4445666666666666654443 3333311 2333 88899988877654 111 2 267777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9591 354 VQVDLASNLTNNQSLLTSLEGK 375 (399)
Q Consensus 354 ~q~~l~~~l~~~~~~L~~ve~~ 375 (399)
-+..|...+...+.+|..+...
T Consensus 255 ~~~~i~~~~~~Q~~ll~~i~~~ 276 (342)
T cd08915 255 DLTYVEKTKKKQIELIKEIDAA 276 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777654
No 179
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=27.64 E-value=5.2e+02 Score=26.19 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 274 CDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS-ALVPRTLERLIALESLHAQAGNFATLLKELE 352 (399)
Q Consensus 274 Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~-~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le 352 (399)
+...=.+|+.++.+++.|...|.. .|.+|=+ +... .+.|.||.-.+.+... .=.=|.+.|...+
T Consensus 196 ~~~~i~~L~~ll~~l~~lk~eR~~----------~~~~Lk~---k~~~DDI~~~ll~~~~~~~~~--~e~lF~~eL~kf~ 260 (356)
T cd09237 196 VLKQIKQLEELLEDLNLIKEERQR----------VLKDLKQ---KIHNDDISDILILNSKSKSEI--EKQLFPEELEKFK 260 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH---HHhccchHHHHHHhcccccch--HHHHHHHHHHHcc
Confidence 344445666777777777654442 2222211 2223 6666666666544321 2233555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9591 353 SVQVDLASNLTNNQSLLTSLEG 374 (399)
Q Consensus 353 ~~q~~l~~~l~~~~~~L~~ve~ 374 (399)
.-+..|...+...+.+|+.+..
T Consensus 261 p~~~~l~~~~~~Q~~ll~el~~ 282 (356)
T cd09237 261 PLQNRLEATIFKQSSLINELKI 282 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666555554
No 180
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=27.57 E-value=2.9e+02 Score=26.28 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 345 ATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 345 ~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
......|+.+...+...++.|++-|...++.+ ...+..||..|.+|+
T Consensus 192 ~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l-------~~qf~~me~~i~~ln 238 (239)
T PF07195_consen 192 TSRIDSLNSQIKSLDKQIEDLEERLESKEERL-------RKQFSAMESLISQLN 238 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 35555556666666666666665555555544 445666676666665
No 181
>PLN02939 transferase, transferring glycosyl groups
Probab=27.51 E-value=9.4e+02 Score=28.37 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9591 327 TLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTS--LEGKMGSDVERIKQDVKALDEKIKA 396 (399)
Q Consensus 327 ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~--ve~~~~~N~~~v~~nv~~Le~Ri~~ 396 (399)
+.++...|+.|-..|..-+..-.-+=++..++...+.+.++.|.. +.+--..|++.++..|+.||+|+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (977)
T PLN02939 298 WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQA 369 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555444443333333334445666667777776654 3334556778888888888888764
No 182
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.50 E-value=2.3e+02 Score=22.56 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 343 NFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 343 ~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
.|-+.+.+|++....|.+.=-..++.+..+++.+ +-+..-..++..-+.||..|
T Consensus 5 ~fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~-~L~k~C~~~L~~ae~kv~~l 58 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGGELSLDDSLKAFEEGV-KHAAFCSKKLDEAERRVEVL 58 (75)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5777777887777777666556666666666654 24555666677777777665
No 183
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=26.40 E-value=2.1e+02 Score=23.60 Aligned_cols=79 Identities=19% Similarity=0.130 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC--CCCchHHHHHHHHHH
Q psy9591 259 TDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS--ALVPRTLERLIALES 336 (399)
Q Consensus 259 l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~--~~LP~ll~RLrsL~~ 336 (399)
|..+..+|.-||..-++-+.+|++... ++..-|... .....+.....++++.+..|-. .+=|.+++.| ++.
T Consensus 5 L~~lR~~ID~ID~qLv~LL~~R~~~~~----~ia~~K~~~-~~~v~dp~Re~~vl~~~~~~a~~~gl~p~~~e~i--~~~ 77 (94)
T TIGR01795 5 LKALRQSIDNIDAAVIHMLAERFKCTS----QVGVLKANA-GLAPADPAREDYQIARLRRLAIDAGLDPEFAEKF--LNF 77 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH--HHH
Confidence 455666666666666666666665432 233222210 1223445566677777777766 5557777777 688
Q ss_pred HHHHHHHH
Q psy9591 337 LHAQAGNF 344 (399)
Q Consensus 337 LH~~Aa~f 344 (399)
||.++-..
T Consensus 78 i~~esir~ 85 (94)
T TIGR01795 78 IVTEVIKH 85 (94)
T ss_pred HHHHHHHH
Confidence 99876543
No 184
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=26.35 E-value=3.2e+02 Score=27.01 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 362 LTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 362 l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
++..+.=|+..++.++.++..++.-+..|+.||.+.
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~ 100 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKT 100 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333344455555666666666666666666666554
No 185
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=26.31 E-value=2.7e+02 Score=23.60 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 330 RLIALESLHAQAGNFATLLKELESVQV 356 (399)
Q Consensus 330 RLrsL~~LH~~Aa~f~~~L~~Le~~q~ 356 (399)
|=+-|+.|-+...+.++.+..|+.+-.
T Consensus 38 r~~qlrqllekVqNmSqsievL~~RT~ 64 (101)
T PF12308_consen 38 RSRQLRQLLEKVQNMSQSIEVLDLRTQ 64 (101)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567788889999999999999987643
No 186
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.29 E-value=1.3e+02 Score=25.40 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy9591 332 IALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDV 380 (399)
Q Consensus 332 rsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~ 380 (399)
.....+..+.+..-+.+..++.....+..+++.|+..-.-+|+--.+++
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~L 75 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNEL 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHc
Confidence 4566777788888888888999999999999988776555665544443
No 187
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.28 E-value=6.2e+02 Score=25.15 Aligned_cols=57 Identities=16% Similarity=0.377 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9591 334 LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKI 394 (399)
Q Consensus 334 L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri 394 (399)
|..+|.+-.++-.-|+.|+....++.+.++..++=++.++ .+++..++.|+.+++||
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~----~eik~l~~eI~~~~~~I 96 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSK----AEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444333333333 33333344444444444
No 188
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=26.11 E-value=8.1e+02 Score=25.98 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhhhhcCC-----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy9591 304 ERDQRVNELYELSRSVDS-----ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTN-NQSLLTSL 372 (399)
Q Consensus 304 ~~~~KI~eLY~~l~~~~~-----~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~-~~~~L~~v 372 (399)
.-.+||++|=+++.-+.. ..-| ..+.|..+-.+...+...|..+......+.-..++ |+.=|+.|
T Consensus 217 ~Ll~kVdDLQD~VE~LRkDV~~RgvRp----~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V 287 (424)
T PF03915_consen 217 RLLTKVDDLQDLVEDLRKDVVQRGVRP----SPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKV 287 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 345577777777777655 2223 35677888888889999999999999999988888 99999888
No 189
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=25.85 E-value=3.5e+02 Score=21.72 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 345 ATLLKELESVQVDLASNLTNNQSLLTSL 372 (399)
Q Consensus 345 ~~~L~~Le~~q~~l~~~l~~~~~~L~~v 372 (399)
...+..+......+...+...+.++..+
T Consensus 11 ~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 11 NQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 190
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.72 E-value=1.2e+03 Score=27.90 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCC
Q psy9591 272 AHCDAYDARITHLSNKLDKIIEKANS 297 (399)
Q Consensus 272 ~~Ld~i~~Rl~~L~~ele~l~~kk~~ 297 (399)
..++.+.+.+..+..+++.+..++..
T Consensus 313 ~~~~~~~~~l~~~~~~L~~i~~~~~~ 338 (1201)
T PF12128_consen 313 KELSALNADLARIKSELDEIEQQKKD 338 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777778877765553
No 191
>PRK10869 recombination and repair protein; Provisional
Probab=25.59 E-value=8.9e+02 Score=26.31 Aligned_cols=109 Identities=11% Similarity=0.011 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCc-------------hhHHHHHHHHHhhhh-c-
Q psy9591 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDS-------------ERDQRVNELYELSRS-V- 319 (399)
Q Consensus 255 L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~-------------~~~~KI~eLY~~l~~-~- 319 (399)
.......+.+++.-|.. .-....+|+.-|.-.+++|....-. +.++. .-...+...|..|.. -
T Consensus 162 ~y~~~~~~~~~l~~l~~-~~~~~~~~~d~l~fql~Ei~~~~l~-~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~ 239 (553)
T PRK10869 162 AYQLWHQSCRDLAQHQQ-QSQERAARKQLLQYQLKELNEFAPQ-PGEFEQIDEEYKRLANSGQLLTTSQNALQLLADGEE 239 (553)
T ss_pred HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33444444444444422 2344556677777777777643332 11111 112234445555522 1
Q ss_pred CC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 320 DS--ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNN 365 (399)
Q Consensus 320 ~~--~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~ 365 (399)
.+ ..|..++..|..|..++.....+.+.|..+--...++...+..+
T Consensus 240 ~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~ 287 (553)
T PRK10869 240 VNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHY 287 (553)
T ss_pred ccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 45667777777777777666667776666666666666666553
No 192
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=25.21 E-value=1.8e+02 Score=25.59 Aligned_cols=96 Identities=13% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 276 AYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS--ALVPRTLERLIALESLHAQAGNFATLLKELES 353 (399)
Q Consensus 276 ~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~--~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~ 353 (399)
.|..++..|..+++.|..+-.. ......+.-..+=..|..... ..+-..+.+|...+..---=.++-+.+...+.
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~---r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~ 100 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEA---RYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKD 100 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9591 354 VQVDLASNLTNNQSLLTSLEG 374 (399)
Q Consensus 354 ~q~~l~~~l~~~~~~L~~ve~ 374 (399)
...+|..+|...++.+...+.
T Consensus 101 ~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 101 LLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 193
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=25.03 E-value=6.1e+02 Score=24.19 Aligned_cols=79 Identities=10% Similarity=0.172 Sum_probs=47.0
Q ss_pred HHHHHhhhhcCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHH
Q psy9591 310 NELYELSRSVDS--ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLE------GKMGSDVE 381 (399)
Q Consensus 310 ~eLY~~l~~~~~--~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve------~~~~~N~~ 381 (399)
+.|..-+..++. ..+-++.+-..++..-|++....+..|..|.....- +|+.-...+..++ ++|++-++
T Consensus 106 esl~~~i~~~~~aa~~i~~~~~~~~~~~~Y~eqm~~aa~~l~~LN~~Ye~---QL~~as~q~~~~~~i~~na~~fkeQ~~ 182 (202)
T TIGR03513 106 QSLGNGINNFEGAAKTLAPMTDSYAQQKKYIEQMSSLAANMEGLNTIYEA---QLKGASSHADANNEIAINSSSLKEEME 182 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444554 555666666777778999999999999888887654 3332222222222 13556666
Q ss_pred HHHHHHHHHH
Q psy9591 382 RIKQDVKALD 391 (399)
Q Consensus 382 ~v~~nv~~Le 391 (399)
.+..|+..|.
T Consensus 183 kLa~NL~sLN 192 (202)
T TIGR03513 183 KMAANLTSLN 192 (202)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 194
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=24.88 E-value=7.1e+02 Score=25.13 Aligned_cols=86 Identities=15% Similarity=0.196 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy9591 275 DAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKE-LES 353 (399)
Q Consensus 275 d~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~-Le~ 353 (399)
..+-.+|+.++.+++.+...|.. -+.+| ..-+..+.|.+|.-++.=..++. -.-|.+.|.. .+.
T Consensus 187 ~~~v~~Lr~~l~~l~~lk~eR~~----------~~~~L----k~~~dDI~~~ll~~~~~~~~~~~-e~l~~~eL~k~f~~ 251 (339)
T cd09235 187 SEAVQELRQLMEQVETIKAEREV----------IESEL----KSATFDMKSKFLSALAQDGAINE-EAISVEELDRVYGP 251 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----------HHHHH----HhcccccHHHHHHHHHhcCCccH-HHhhHHHHHHHHHH
Confidence 33446777778888887755543 23333 22122788888865532222332 3445566654 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9591 354 VQVDLASNLTNNQSLLTSLEGK 375 (399)
Q Consensus 354 ~q~~l~~~l~~~~~~L~~ve~~ 375 (399)
-+..|...+...+.+|..+...
T Consensus 252 ~~~~i~~~~~~Q~~ll~~i~~~ 273 (339)
T cd09235 252 LQKQVQESLSRQESLLANIQVA 273 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776654
No 195
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=24.84 E-value=6.3e+02 Score=24.30 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=88.6
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcCCC---chhHHHHH
Q psy9591 204 AAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAA---HCDAYDAR 280 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~~~---~Ld~i~~R 280 (399)
..-+.++|.+|..+-..+.. +.. ..+.|......+..-+..|.+. .|...=..
T Consensus 29 k~~l~~l~~~Lk~a~~~~~~------lv~------------------~rkela~~~~~~s~al~~l~~ee~t~L~kals~ 84 (218)
T cd07663 29 KTFLVNYYNRIKDSCAKADK------MTR------------------SHKNVADDYIHISAALNSVAAEEPTVIKKYLLK 84 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHH------------------HHHHHHHHHHHHHHHHHhhcccccchHHHHHHH
Confidence 44568888888888776643 221 2245666677777888877533 24444455
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 281 ITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLAS 360 (399)
Q Consensus 281 l~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~ 360 (399)
+..+..++.++..+-+. +..-|..++...+-+.-..+=-.+.+|+++|..-+.-. .+|++... ...
T Consensus 85 lae~~Ek~~~l~~r~A~------~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~-------~~L~KaR~-k~k 150 (218)
T cd07663 85 VAELFEKLRKVEDRVAS------DQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSN-------KALDKARL-KSK 150 (218)
T ss_pred HHHHHHHHHHHHHHHHH------hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHh-hhh
Confidence 55555556665544332 45556666555444443322245789999998877443 33333332 255
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9591 361 NLTNNQSLLTSLEGKMGSDVERIKQDVKALDE 392 (399)
Q Consensus 361 ~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~ 392 (399)
++..|+.....-++.|..=-..++.-+...+.
T Consensus 151 ev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~ 182 (218)
T cd07663 151 DVKQAEAHQQECCQKFEKLSESAKQELISFKR 182 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777666666666655555543
No 196
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=24.69 E-value=1.9e+02 Score=25.59 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9591 347 LLKELESVQVDLASNLTN 364 (399)
Q Consensus 347 ~L~~Le~~q~~l~~~l~~ 364 (399)
++..|+.....=..+|..
T Consensus 95 ~~~kLe~e~~~Kdsei~~ 112 (131)
T PF04859_consen 95 VVKKLEAELRAKDSEIDR 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333343333333333333
No 197
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.50 E-value=3.2e+02 Score=20.73 Aligned_cols=14 Identities=36% Similarity=0.684 Sum_probs=5.9
Q ss_pred HHHhHHHHHHHHHH
Q psy9591 376 MGSDVERIKQDVKA 389 (399)
Q Consensus 376 ~~~N~~~v~~nv~~ 389 (399)
+++.++.|+.||++
T Consensus 26 i~~~ve~i~envk~ 39 (55)
T PF05377_consen 26 ISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 198
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=24.12 E-value=2e+02 Score=24.11 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhh
Q psy9591 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRS 318 (399)
Q Consensus 255 L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~ 318 (399)
+...++....++..........+.+-|..|..=..+|..-....+....+...+|++||+.+|.
T Consensus 34 v~~~~~~f~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~ 97 (113)
T PF02520_consen 34 VQDQYNEFKAQVQAQKEEVRKNVTAVISNLSSAFAKLSAILDNKSLTRQQQQEAIDALRKQYPE 97 (113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCH
Confidence 4445555555555444444444444444444434444433332223456889999999999864
No 199
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.83 E-value=3.9e+02 Score=21.48 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 332 IALESLHAQAGNFATLLKELESVQVDLASNLTNNQS 367 (399)
Q Consensus 332 rsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~ 367 (399)
.-+..++.+.......+..++....++...++....
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~ 40 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEK 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555556666666666666555555544443
No 200
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=23.81 E-value=4.6e+02 Score=22.37 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q psy9591 329 ERLIALESLHAQ 340 (399)
Q Consensus 329 ~RLrsL~~LH~~ 340 (399)
+||+.|..|-.+
T Consensus 3 eRL~~L~~Idk~ 14 (117)
T PF10280_consen 3 ERLQQLNEIDKK 14 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 566666665544
No 201
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=23.79 E-value=6.6e+02 Score=24.20 Aligned_cols=88 Identities=19% Similarity=0.290 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 274 CDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELES 353 (399)
Q Consensus 274 Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~ 353 (399)
...+-++|+.++.+++.+...|.. -+++|=. .+....+|.++.-+..... +..-.=|...|..++.
T Consensus 139 ~~~~i~~L~~ll~~l~~l~~eR~~----------~~~~lk~---~~~~d~i~~~l~~~~~~~~-~~~~~lf~~eL~k~~~ 204 (296)
T PF13949_consen 139 VSEVIRQLRELLNKLEELKKEREE----------LLEQLKE---KLQNDDISKLLSELNKNGS-ADFEALFEEELKKFDP 204 (296)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH--------HHHHHHHHHHHSSS---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH---HHhhccHHHHHHHhhccCC-ccHHHHHHHHHHHHHH
Confidence 455667788888888888654442 2222221 1222566666664432111 2334556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9591 354 VQVDLASNLTNNQSLLTSLEGK 375 (399)
Q Consensus 354 ~q~~l~~~l~~~~~~L~~ve~~ 375 (399)
.+..+...+...+.+|..+...
T Consensus 205 ~~~~i~~~~~~Q~~ll~~i~~~ 226 (296)
T PF13949_consen 205 LQNRIQQNLSKQEELLQEIQEA 226 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777776666553
No 202
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=23.75 E-value=7.8e+02 Score=24.99 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC-CCCchHHHHHHHHHHHHH--------HHHHH
Q psy9591 274 CDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS-ALVPRTLERLIALESLHA--------QAGNF 344 (399)
Q Consensus 274 Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~-~~LP~ll~RLrsL~~LH~--------~Aa~f 344 (399)
+...-++|+.++.+++.+...|.. .+.+|=. +... .+.|.||.-+.++...+. -=.=|
T Consensus 190 ~~~~i~~Lr~~l~~l~~l~~eR~~----------~~~~Lk~---k~~~DDI~~~ll~~~~~~~~~~~~~~i~~~~fe~lf 256 (353)
T cd09236 190 LERHVRALRVSLEELDRLESRRRR----------KVERART---KARADDIRPEILREAARLEREYPATEVAPAHFEDLF 256 (353)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH---HHHhcCchHHHHHHHHhhhcccccccccHHHHHHHH
Confidence 444556667777777777655543 2222211 2233 788888876554433310 12235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 345 ATLLKELESVQVDLASNLTNNQSLLTSLEGK 375 (399)
Q Consensus 345 ~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~ 375 (399)
.+.|...+.-+..+...+...+.+|+.+...
T Consensus 257 ~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~ 287 (353)
T cd09236 257 DKRLAKYDKDLDAVSEEAQEQEEILQQIEVA 287 (353)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777777776643
No 203
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.62 E-value=4.3e+02 Score=29.16 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy9591 283 HLSNKLDKII 292 (399)
Q Consensus 283 ~L~~ele~l~ 292 (399)
.|..++..+.
T Consensus 186 ~L~~dl~~~~ 195 (650)
T TIGR03185 186 RLAGDLTNVL 195 (650)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 204
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.60 E-value=3.8e+02 Score=21.35 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 332 IALESLHAQAGNFATLLKELESVQVDLASN----LTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 332 rsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~----l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
..|..+..-..+...++..++..-..+..+ +++-++++..|+.+. +++..+-..++++-.-+..|
T Consensus 19 ~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~-~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 19 KVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKL-EKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence 344555555555555655555554444433 344445555554432 33444444445554444444
No 205
>KOG0612|consensus
Probab=23.55 E-value=1.4e+03 Score=27.78 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9591 86 PLQKYQRLQCELKELMD 102 (399)
Q Consensus 86 ~~qKl~RL~rEveEL~e 102 (399)
+.+-+.+|+-+..||..
T Consensus 470 L~e~i~~lk~~~~el~~ 486 (1317)
T KOG0612|consen 470 LEETIEKLKSEESELQR 486 (1317)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666677777777774
No 206
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=23.48 E-value=8.4e+02 Score=25.27 Aligned_cols=68 Identities=16% Similarity=0.297 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 326 RTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLT-----SLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 326 ~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~-----~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
+=.++++.|..=|++-........+..+.+.++... +++|. .|-+-.++-+..++..+..||++|+-|
T Consensus 30 ~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a----~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 30 SDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDA----KEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566666666666666666666666665554433 44444 344556677778888888888888765
No 207
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=23.26 E-value=4.9e+02 Score=22.50 Aligned_cols=62 Identities=13% Similarity=0.295 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9591 331 LIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDE 392 (399)
Q Consensus 331 LrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~ 392 (399)
++.|..+-.++..+-..+..|...-......+...+.....-+..+...+.-++..+.+|..
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666667666666666666666666666666777777777777777764
No 208
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=23.06 E-value=2.9e+02 Score=19.79 Aligned_cols=50 Identities=14% Similarity=0.274 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy9591 338 HAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDV 387 (399)
Q Consensus 338 H~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv 387 (399)
|.........+..+...-.+|...+....+.|..++.++......+..-.
T Consensus 11 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~ 60 (66)
T smart00397 11 DEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN 60 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33334444555666777778888888888889888877655555444433
No 209
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=23.03 E-value=2.9e+02 Score=21.77 Aligned_cols=73 Identities=21% Similarity=0.299 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH--hcCCCCCCCchhHHHHHHHHHhhhhcCC-CCCchHHHHHHHHHHH
Q psy9591 261 WLRAQINLIDAAHCDAYDARITHLSNKLDKIIE--KANSVDPKDSERDQRVNELYELSRSVDS-ALVPRTLERLIALESL 337 (399)
Q Consensus 261 ~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~--kk~~~~~~~~~~~~KI~eLY~~l~~~~~-~~LP~ll~RLrsL~~L 337 (399)
.+..+|.-||..-++-+..|+... .++.. +..+.+.-++..+. ++++.+..+-+ +..|..+..+ ++.|
T Consensus 3 ~lR~~Id~iD~~i~~Ll~~R~~~~----~~i~~~K~~~~~~i~d~~RE~---~vl~~~~~~~~~~~~~~~i~~i--f~~I 73 (81)
T TIGR01805 3 LIRKKIDEIDDKLVVLFEERMEVV----KEIAAYKKKNGIPIFDSKREQ---EIIDKCTKNVENKEYRETIEEF--FRNI 73 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCCCChHHHH---HHHHHHHHHcccCCCHHHHHHH--HHHH
Confidence 344555555444444455554432 23332 22233334555554 44445555555 7778888777 6777
Q ss_pred HHHHH
Q psy9591 338 HAQAG 342 (399)
Q Consensus 338 H~~Aa 342 (399)
|..+-
T Consensus 74 ~~~Sr 78 (81)
T TIGR01805 74 MDISK 78 (81)
T ss_pred HHHHH
Confidence 76654
No 210
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N-terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins [].; PDB: 2ZSH_B 2ZSI_B.
Probab=22.86 E-value=2e+02 Score=23.01 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHH
Q psy9591 204 AAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWL 262 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L 262 (399)
.+.++++=+||.+||..+|.-+. +.++.++.|-. .-.|..|...|+.+
T Consensus 13 sSdmadVAQkLEqLE~vmg~~~~-d~ls~lasDTV----------hyNPSDLs~WvesM 60 (73)
T PF12041_consen 13 SSDMADVAQKLEQLEMVMGNAQE-DGLSQLASDTV----------HYNPSDLSSWVESM 60 (73)
T ss_dssp GGGHHHHHHHHHHHHHHHTT----------HCCHC----------CS-TTBHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccccc-chHHHhhhhhh----------ccChHHHHHHHHHH
Confidence 35667888999999999995542 23555552211 23456676665554
No 211
>PRK06798 fliD flagellar capping protein; Validated
Probab=22.74 E-value=2.7e+02 Score=29.44 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=33.6
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9591 326 RTLERLIA-LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKAL 390 (399)
Q Consensus 326 ~ll~RLrs-L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~L 390 (399)
-+..||.. |..+...-.-+......|+.+...+...++.|+.-|+..|+.+..--..++.-|..|
T Consensus 358 Gia~~l~~~l~~~~~~~G~i~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~l 423 (440)
T PRK06798 358 GLGKEMEKSLDKIFGDEGIIGERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAAL 423 (440)
T ss_pred cHHHHHHHHHHhhhCCCceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556654 333332223455566666666666666666666666665554433333333333333
No 212
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.46 E-value=96 Score=23.32 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy9591 86 PLQKYQRLQCELKELMDEVSQ 106 (399)
Q Consensus 86 ~~qKl~RL~rEveEL~eE~~~ 106 (399)
..+++.|+++|+++++.|+++
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356777888888888887754
No 213
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.33 E-value=69 Score=29.02 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q psy9591 87 LQKYQRLQCELKELMDEVSQIKEP 110 (399)
Q Consensus 87 ~qKl~RL~rEveEL~eE~~~~k~~ 110 (399)
--|++||+|.+..+.+|+++.+++
T Consensus 65 FAkwaKl~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 65 FAKWAKLNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999876654
No 214
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.24 E-value=5.8e+02 Score=22.96 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 332 IALESLHAQAGNFATLLKELESVQVDLASNLTNNQSL 368 (399)
Q Consensus 332 rsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~ 368 (399)
..|+.|-.++..+...+..|+..+.++...++..+.+
T Consensus 13 a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~l 49 (145)
T COG1730 13 AQLQILQSQIESLQAQIAALNAAISELQTAIETLENL 49 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777666554443
No 215
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=22.10 E-value=8.2e+02 Score=24.67 Aligned_cols=134 Identities=16% Similarity=0.258 Sum_probs=80.7
Q ss_pred CCCChHHHHHHHHHHHh--hcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHH
Q psy9591 251 GHNSLVENTDWLRAQIN--LIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTL 328 (399)
Q Consensus 251 ~~~~L~~~l~~L~~qls--lL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll 328 (399)
+..+|--.+..|....- .|+|..=..|-.+|..|.++++.....- +...++.+||.-...+.. -.-.+-
T Consensus 108 ~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~--------e~~~~~~el~aei~~lk~-~~~e~~ 178 (294)
T COG1340 108 SIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKAL--------EENEKLKELKAEIDELKK-KAREIH 178 (294)
T ss_pred CHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 44567777888876655 4556677777788888888877664321 344466666665555433 112223
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 329 ERLIAL----ESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 329 ~RLrsL----~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
+|+..| ..+|.+.....+-.+.+...-..|...+-........+...|. .+.+.+.+++.+|.+|
T Consensus 179 eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~----~~~~elre~~k~ik~l 247 (294)
T COG1340 179 EKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFR----NLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 333332 5677777777777777777777777776666666555554443 2444555555555544
No 216
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.96 E-value=3e+02 Score=21.89 Aligned_cols=54 Identities=11% Similarity=0.227 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 343 NFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 343 ~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
.|-+.+.+|+.....|.+.=-..++.+..++..+. -+..-+..+..-|.||..|
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~-L~k~c~~~L~~ae~kv~~l 60 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQKGIE-LTKLCQDKLQSAEKRMAKV 60 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 46666677777666666655555556665555542 3444555566666666554
No 217
>PRK01203 prefoldin subunit alpha; Provisional
Probab=21.94 E-value=2.8e+02 Score=24.60 Aligned_cols=66 Identities=12% Similarity=0.249 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHH
Q psy9591 332 IALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTS----------------------------------LEGKMG 377 (399)
Q Consensus 332 rsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~----------------------------------ve~~~~ 377 (399)
..|+.+.+++..+.+.++.|...+.+....++..+..-.. ||+++.
T Consensus 7 ~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK~~e 86 (130)
T PRK01203 7 AQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAEERE 86 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEecHH
Confidence 4578888999999999999999999987776666552100 244577
Q ss_pred HhHHHHHHHHHHHHHHHHhh
Q psy9591 378 SDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 378 ~N~~~v~~nv~~Le~Ri~~L 397 (399)
+-++.++.++++|+.-|...
T Consensus 87 ~kie~L~~~ie~Le~~i~~K 106 (130)
T PRK01203 87 RTIERLKENLEDLKDSIQKL 106 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887766543
No 218
>PRK06285 chorismate mutase; Provisional
Probab=21.91 E-value=4.5e+02 Score=21.52 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC--CCCchHHHHH
Q psy9591 254 SLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS--ALVPRTLERL 331 (399)
Q Consensus 254 ~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~--~~LP~ll~RL 331 (399)
.....|+.|..+|.-+|..-++-|.+|+..... +-.+. +..+.+.-++ ....++++.+..+-. ++-|..+.++
T Consensus 4 ~~~~~L~elR~~ID~ID~~iv~Ll~~R~~l~~~-I~~~K-~~~~~~v~dp---~RE~~vl~~~~~~a~~~~l~~~~i~~i 78 (96)
T PRK06285 4 SAEKRLNEIRKRIDEIDEQIIDLIAERTSLAKE-IAELK-KSLGMPIFDP---EREDYIHEKIRKLCEEHNIDENIGLKI 78 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHcCCCCCCh---HHHHHHHHHHHHHhhhCCCCHHHHHHH
Confidence 346678889998888888888888888765432 22221 2223233344 444556666666655 6667788777
Q ss_pred HHHHHHHHHHHH
Q psy9591 332 IALESLHAQAGN 343 (399)
Q Consensus 332 rsL~~LH~~Aa~ 343 (399)
++.||..+-.
T Consensus 79 --f~~Ii~~s~~ 88 (96)
T PRK06285 79 --MKILMEHSKE 88 (96)
T ss_pred --HHHHHHHHHH
Confidence 5666665544
No 219
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.85 E-value=1.6e+02 Score=28.09 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q psy9591 87 LQKYQRLQCELKELMDEVSQIKEP 110 (399)
Q Consensus 87 ~qKl~RL~rEveEL~eE~~~~k~~ 110 (399)
.+|+.|+|.++.|+++|..+.+.+
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~ 94 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQES 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999765544
No 220
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.75 E-value=7.7e+02 Score=25.27 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9591 335 ESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSD 379 (399)
Q Consensus 335 ~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N 379 (399)
+.|++......+.+.++.+.|..-.+.|+..+.-|..+..+++..
T Consensus 14 q~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 14 QELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566888888888888888888777776666665544433
No 221
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.69 E-value=1.2e+02 Score=24.15 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHH
Q psy9591 209 SLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLID--AAHCDAYDARITHLSN 286 (399)
Q Consensus 209 ~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~--~~~Ld~i~~Rl~~L~~ 286 (399)
.||..+.+||..|..=. .+.-||-.++.....=+.++. ...|+.++.||..|..
T Consensus 5 ~fEeal~~LE~IV~~LE------------------------~g~l~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l~~ 60 (75)
T PRK14066 5 KFETALKKLEEVVKKLE------------------------GGELSLDDSLKAFEEGVKHAAFCSKKLDEAERRVEVLLK 60 (75)
T ss_pred cHHHHHHHHHHHHHHHH------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58889999998874321 244688888888888888886 4678888888877765
No 222
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.41 E-value=6.1e+02 Score=22.89 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhh
Q psy9591 342 GNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSD---VERIKQDVKALDEKIKAL 397 (399)
Q Consensus 342 a~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N---~~~v~~nv~~Le~Ri~~L 397 (399)
..+...+..++....++..++......+...+..+..- ......+...|+..+..+
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQEL 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666665554444444333322 233344455555555443
No 223
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=21.27 E-value=9.3e+02 Score=24.99 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=19.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 370 TSLEGKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 370 ~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
..+...+...+..-+..+..+..|+..++
T Consensus 364 ~rL~~a~~~~L~~~~~rL~~l~~rL~~ls 392 (438)
T PRK00286 364 QRLRRAMRRQLKRKRQRLEALAQQLEALS 392 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445566777777778888888887653
No 224
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=21.15 E-value=4e+02 Score=20.73 Aligned_cols=48 Identities=15% Similarity=0.339 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 351 LESVQVDLASNLTN-NQSLLTSLEG--KMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 351 Le~~q~~l~~~l~~-~~~~L~~ve~--~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
++..+.+|+..+-. ++..+..-++ .|+.++..+...+..|...|..+.
T Consensus 35 i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 35 IEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444433 5666655554 588888889999998888888775
No 225
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.15 E-value=5.5e+02 Score=23.68 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 347 LLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 347 ~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
.+..|+....++...|+..+..+..+..- +...+--+..+|+|+.+|
T Consensus 124 ~~~~L~~~~~~l~~~l~ek~k~~e~l~DE----~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 124 ELAQLEEKIKDLEEELKEKNKANEILQDE----LQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444332 222233344455555554
No 226
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=21.10 E-value=2.5e+02 Score=29.08 Aligned_cols=51 Identities=14% Similarity=0.278 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9591 345 ATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKA 396 (399)
Q Consensus 345 ~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~ 396 (399)
.+.+..|++.+.++...+.++++-|.+-. +...-+...+..++.++.||+.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-k~~~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP-KKKNKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544444443333 3333334444444445555443
No 227
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=21.02 E-value=4.3e+02 Score=24.38 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy9591 379 DVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 379 N~~~v~~nv~~Le~Ri~~L 397 (399)
+...++..|+++++||..+
T Consensus 136 ~~~~i~e~IKd~de~L~~I 154 (163)
T PF03233_consen 136 TEKLIEELIKDFDERLKEI 154 (163)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 3344555555555555543
No 228
>KOG0219|consensus
Probab=20.96 E-value=3.2e+02 Score=31.40 Aligned_cols=85 Identities=19% Similarity=0.320 Sum_probs=45.2
Q ss_pred chhHHHHHHHHHhhhhcCC--CCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy9591 303 SERDQRVNELYELSRSVDS--ALVPRTLERLIALESLHAQAG-NFATLLKELESVQVDLASNLTNNQSLLTSLEG----- 374 (399)
Q Consensus 303 ~~~~~KI~eLY~~l~~~~~--~~LP~ll~RLrsL~~LH~~Aa-~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~----- 374 (399)
....+.++.+|+-..++.. ..||.+++ ..|...- .....+..+++-|..+...+. +...|+
T Consensus 385 ~~~L~d~~r~yq~~~~l~~~~~~l~~~~~------~~~~ll~~~l~~~~~~~~kf~~~ve~t~D-----~da~ee~ey~V 453 (902)
T KOG0219|consen 385 KANLQDVNRIYQAAKLLPTVVQVLISLSE------SHNRLLKSPLTEHLKKLEKFQEMVETTVD-----LDAEEENEYRV 453 (902)
T ss_pred hcchHHHHHHHHHHHHhHHHHHHHHhhhh------hhhhhhhhhhhhhhhhHHHHHHHHHHHhh-----HhHHhcCcEEE
Confidence 3455667777777777655 55666655 1121111 222222233333322222211 111111
Q ss_pred --HHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 375 --KMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 375 --~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
.|.+++..+...+..|+..|.++.
T Consensus 454 R~eFdeeL~eLrq~LdeL~~~m~~~h 479 (902)
T KOG0219|consen 454 RVDFDEELQELREKLDELERKMEKLH 479 (902)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999998887764
No 229
>KOG1853|consensus
Probab=20.96 E-value=5.1e+02 Score=25.77 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 339 AQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 339 ~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
.+++.+...-..+.+.-.+|..++...+++=..+|.-|...+..++...++|+.|.+.|
T Consensus 13 eE~~ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 13 EEDQYWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555555555555555555555555555555443
No 230
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.90 E-value=3.6e+02 Score=27.75 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 327 TLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG 374 (399)
Q Consensus 327 ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~ 374 (399)
+-.|+..+. ......-..+.++++....+...++.+..-|..+|.
T Consensus 142 l~~Ri~e~E---eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 142 LNSRIDELE---ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp --HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 334544433 223344445555555555555566665556666655
No 231
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.80 E-value=91 Score=22.45 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhc
Q psy9591 85 TPLQKYQRLQCELKELMDEVSQIK 108 (399)
Q Consensus 85 T~~qKl~RL~rEveEL~eE~~~~k 108 (399)
++-..|.+|+.|.+.|..++..++
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777776665544
No 232
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=20.66 E-value=3.4e+02 Score=19.72 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9591 344 FATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKA 396 (399)
Q Consensus 344 f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~ 396 (399)
|-+.+..|++....|.+.=-..++++..+++++. =+..-+..+...+.+|..
T Consensus 1 fEe~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~-l~~~c~~~L~~~e~~i~~ 52 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGELSLDESLKLYEEGME-LIKKCQERLEEAEQKIEE 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 3445566666666665544445555555555432 233444555555555554
No 233
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.66 E-value=6.9e+02 Score=23.21 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=21.1
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 327 TLERLIAL--ESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL 372 (399)
Q Consensus 327 ll~RLrsL--~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~v 372 (399)
|+.||.++ ..+|.-...+-.--.-|++...+|...+.+++..+..+
T Consensus 2 lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~ 49 (221)
T PF04012_consen 2 LFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARV 49 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455443 23333333333333445555555555555555554443
No 234
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=20.57 E-value=7.5e+02 Score=23.62 Aligned_cols=76 Identities=12% Similarity=0.252 Sum_probs=47.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcCCCchhHHHHHH
Q psy9591 202 NTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARI 281 (399)
Q Consensus 202 ~~~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl 281 (399)
....++..|-..|..||+.|.... --+.... .....-+-..++.+..++.-.-....+.++.++
T Consensus 31 ~ee~r~~~i~e~i~~Le~~l~~E~----k~R~E~~------------~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l 94 (247)
T PF06705_consen 31 QEEQRFQDIKEQIQKLEKALEAEV----KRRVESN------------KKLQSKFEEQINNMQERVENQISEKQEQLQSRL 94 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999997654 2222100 012234455555565555544455677777777
Q ss_pred HHHHHHHHHHHH
Q psy9591 282 THLSNKLDKIIE 293 (399)
Q Consensus 282 ~~L~~ele~l~~ 293 (399)
..|..++..|..
T Consensus 95 ~~L~~ri~~L~~ 106 (247)
T PF06705_consen 95 DSLNDRIEALEE 106 (247)
T ss_pred HHHHHHHHHHHH
Confidence 777777777653
No 235
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=20.49 E-value=6.3e+02 Score=22.67 Aligned_cols=35 Identities=9% Similarity=0.219 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHH
Q psy9591 358 LASNLTNNQSLLTSLEG-------KMGSDVERIKQDVKALDE 392 (399)
Q Consensus 358 l~~~l~~~~~~L~~ve~-------~~~~N~~~v~~nv~~Le~ 392 (399)
....-..|+..+..++. .|.+-++.+..-...|+.
T Consensus 102 ~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~~~ 143 (145)
T PF14942_consen 102 REQRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEMEK 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445557777766543 355555555555555543
No 236
>PRK07248 hypothetical protein; Provisional
Probab=20.44 E-value=4.5e+02 Score=20.96 Aligned_cols=77 Identities=16% Similarity=0.295 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH--hcCCCCCCCchhHHHHHHHHHhhhhcCC-CCCchHHHHHHHHH
Q psy9591 259 TDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIE--KANSVDPKDSERDQRVNELYELSRSVDS-ALVPRTLERLIALE 335 (399)
Q Consensus 259 l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~--kk~~~~~~~~~~~~KI~eLY~~l~~~~~-~~LP~ll~RLrsL~ 335 (399)
|..+..+|.-||..=++-+.+|+... .++.. +..+.+.-++..+.. +++.+..+-. +..|..+.++ ++
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l~----~~I~~~K~~~~~~v~d~~RE~~---vl~~~~~~~~~~~~~~~i~~i--f~ 73 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVALLEKRMALV----EQVVAYKKATGKPVLDTKREQV---ILDKVSSLVENKAYQETIVAT--FK 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCCCChHHHHH---HHHHHHHHcccCCCHHHHHHH--HH
Confidence 34455555555555555555555433 22222 222333455555554 4445555555 7888888777 77
Q ss_pred HHHHHHHHH
Q psy9591 336 SLHAQAGNF 344 (399)
Q Consensus 336 ~LH~~Aa~f 344 (399)
.||..+-.+
T Consensus 74 ~I~~~S~~~ 82 (87)
T PRK07248 74 DIMKRSRDY 82 (87)
T ss_pred HHHHHHHHH
Confidence 888766543
No 237
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.19 E-value=87 Score=26.59 Aligned_cols=35 Identities=34% Similarity=0.293 Sum_probs=25.9
Q ss_pred cceecccchhHHHhhhhhhHHHHHHHHHHHHHHhC
Q psy9591 188 VRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLG 222 (399)
Q Consensus 188 vtye~~~~~~~~~~~~~~~ia~LE~RL~~LE~~lG 222 (399)
|+-+=|--+.+.-...-.+++.||.||..||+.+-
T Consensus 56 VsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 56 VSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333434455556778899999999999999996
Done!