Query psy9591
Match_columns 399
No_of_seqs 129 out of 174
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 23:35:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_A Prefoldin; archaeal pro 89.1 3.9 0.00013 32.7 10.5 73 325-397 1-91 (107)
2 2zqm_A Prefoldin beta subunit 83.1 9.3 0.00032 30.9 9.8 73 325-397 6-96 (117)
3 1i84_S Smooth muscle myosin he 82.7 0.89 3E-05 51.7 4.5 19 379-397 1145-1163(1184)
4 3na7_A HP0958; flagellar bioge 82.3 31 0.0011 32.0 17.9 25 200-224 6-30 (256)
5 1c1g_A Tropomyosin; contractIl 77.1 17 0.00059 32.0 10.5 8 347-354 91-98 (284)
6 3ghg_A Fibrinogen alpha chain; 76.3 39 0.0013 35.1 13.7 97 277-394 62-158 (562)
7 3iv1_A Tumor susceptibility ge 74.1 28 0.00097 27.0 9.3 67 324-392 5-74 (78)
8 3na7_A HP0958; flagellar bioge 73.7 22 0.00074 33.1 10.5 75 322-396 28-115 (256)
9 1i84_S Smooth muscle myosin he 73.2 3.8 0.00013 46.6 6.0 20 87-106 856-875 (1184)
10 2odv_A Plectin 1, HD1; plakin 71.0 34 0.0012 31.6 11.0 19 379-397 166-184 (235)
11 3r84_A Mediator of RNA polymer 68.9 23 0.00079 28.0 7.9 61 327-387 3-74 (86)
12 1m1j_A Fibrinogen alpha subuni 65.3 1.2E+02 0.0041 31.0 14.1 90 277-398 63-152 (491)
13 1deq_A Fibrinogen (alpha chain 59.8 54 0.0018 32.7 10.3 27 371-398 128-154 (390)
14 3ra3_B P2F; coiled coil domain 59.3 12 0.0004 22.9 3.5 22 86-107 5-26 (28)
15 3sja_C Golgi to ER traffic pro 59.0 22 0.00074 26.7 5.7 43 86-138 4-46 (65)
16 3a7p_A Autophagy protein 16; c 56.3 97 0.0033 26.9 10.2 88 304-397 39-144 (152)
17 2dl1_A Spartin; SPG20, MIT, st 53.5 82 0.0028 26.2 9.0 65 330-395 11-99 (116)
18 1gl2_D Syntaxin 8, vesicle tra 53.0 63 0.0021 23.5 8.2 51 339-389 9-59 (65)
19 3tnu_B Keratin, type II cytosk 51.0 1E+02 0.0034 25.6 9.4 50 346-395 43-92 (129)
20 3mq9_A Bone marrow stromal ant 50.7 1.3E+02 0.0044 29.8 11.8 70 327-396 385-454 (471)
21 1vda_A FMBP-1, fibroin-modulat 49.7 5.2 0.00018 24.2 0.8 12 84-95 1-12 (26)
22 3hd7_B Syntaxin-1A; membrane p 48.0 1.1E+02 0.0037 24.7 10.5 61 331-391 13-73 (109)
23 3tnu_A Keratin, type I cytoske 47.2 90 0.0031 26.0 8.6 28 366-393 65-92 (131)
24 2bsg_A Fibritin; viral protein 43.6 14 0.00048 37.9 3.3 139 253-398 287-455 (487)
25 3i9y_A Sensor protein; stacked 43.2 89 0.003 29.7 8.7 159 204-390 43-210 (276)
26 1jth_B Syntaxin 1A; coiled-coi 41.7 1.1E+02 0.0037 23.0 10.5 61 332-392 3-63 (77)
27 3qfl_A MLA10; coiled-coil, (CC 41.1 74 0.0025 25.7 6.9 63 323-391 2-65 (115)
28 3vlc_E Golgi to ER traffic pro 40.9 48 0.0016 26.6 5.4 43 86-138 28-70 (94)
29 2p22_A Suppressor protein STP2 40.8 78 0.0027 28.1 7.4 50 348-397 40-89 (174)
30 1m1j_B Fibrinogen beta chain; 40.7 1.4E+02 0.0048 30.5 10.2 22 376-397 166-187 (464)
31 4abx_A DNA repair protein RECN 40.4 1.8E+02 0.0061 25.1 11.3 22 376-397 141-162 (175)
32 3ci9_A Heat shock factor-bindi 40.3 56 0.0019 23.0 5.1 35 365-399 11-45 (48)
33 3sjb_C Golgi to ER traffic pro 40.3 57 0.0019 26.1 5.7 44 85-138 20-63 (93)
34 3pe0_A Plectin; cytoskeleton, 40.1 2.3E+02 0.0079 26.4 11.2 130 259-397 43-183 (283)
35 2zqm_A Prefoldin beta subunit 39.0 1.4E+02 0.0049 23.5 9.7 56 342-397 16-89 (117)
36 2nps_D Syntaxin-6; vesicle fus 38.4 1.3E+02 0.0044 22.9 9.1 52 341-392 21-72 (82)
37 1fxk_A Prefoldin; archaeal pro 38.3 1.4E+02 0.0048 23.2 9.6 57 342-398 11-85 (107)
38 1vd8_A FMBP-1, fibroin-modulat 36.4 11 0.00036 22.7 0.7 12 84-95 1-12 (26)
39 3oja_A Leucine-rich immune mol 36.4 95 0.0033 30.9 8.3 87 311-397 385-472 (487)
40 2er8_A Regulatory protein Leu3 35.0 23 0.0008 25.9 2.6 21 204-224 48-68 (72)
41 1n7s_D SNAP-25A; neuronal snar 34.8 1.3E+02 0.0044 21.8 9.8 50 339-388 10-59 (66)
42 2ke4_A CDC42-interacting prote 34.4 66 0.0023 25.8 5.4 28 83-110 10-37 (98)
43 3swy_A Cyclic nucleotide-gated 33.6 1.2E+02 0.0041 21.1 6.7 10 366-375 11-20 (46)
44 3b5n_B Protein SSO1; snare com 33.6 1.4E+02 0.0048 21.9 10.5 60 332-391 3-62 (69)
45 2nps_B Syntaxin 13, vesicle-as 32.5 1.5E+02 0.0051 21.8 9.3 54 338-391 5-58 (71)
46 4g2k_A General control protein 32.4 96 0.0033 26.0 6.1 64 303-372 17-86 (125)
47 3ghg_A Fibrinogen alpha chain; 31.9 1.5E+02 0.005 30.9 8.6 48 350-398 103-151 (562)
48 2b9c_A Striated-muscle alpha t 31.8 53 0.0018 28.3 4.7 113 262-375 1-123 (147)
49 3ghg_B Fibrinogen beta chain; 31.7 2E+02 0.0067 29.4 9.5 27 372-398 157-183 (461)
50 1hbw_A Regulatory protein GAL4 31.7 19 0.00065 26.2 1.5 19 205-223 3-21 (57)
51 1n7s_B Syntaxin 1A; neuronal s 30.8 1.6E+02 0.0053 21.5 10.5 58 333-390 6-63 (68)
52 3uux_B Mitochondrial division 30.7 1.4E+02 0.0047 27.9 7.5 88 311-398 126-225 (242)
53 1lq7_A Alpha3W; three helix bu 30.6 66 0.0023 23.2 4.2 38 360-397 29-67 (67)
54 1deq_A Fibrinogen (alpha chain 30.5 1.7E+02 0.0058 29.1 8.6 88 304-395 64-158 (390)
55 3swy_A Cyclic nucleotide-gated 29.8 1.4E+02 0.0048 20.7 6.8 19 344-362 21-39 (46)
56 1sfc_D Protein (SNAP-25B), pro 29.8 1.9E+02 0.0065 22.2 9.8 58 336-397 26-83 (87)
57 3edu_A Beta-I spectrin, spectr 29.5 2.2E+02 0.0076 24.7 8.7 39 256-295 33-72 (218)
58 3edv_A Spectrin beta chain, br 29.4 3.3E+02 0.011 24.9 15.3 57 340-396 186-244 (323)
59 3eab_A Spastin; spastin, MIT, 28.9 2.1E+02 0.0073 22.5 9.1 58 333-391 8-89 (89)
60 2pjw_V Vacuolar protein sortin 28.8 1.1E+02 0.0038 24.2 5.8 66 283-352 13-81 (91)
61 1hx1_B BAG-1, BAG-family molec 28.3 1.4E+02 0.0047 24.8 6.3 30 331-360 10-39 (114)
62 1l4a_D S-SNAP25 fusion protein 27.6 2.1E+02 0.0073 22.1 8.1 57 337-397 28-84 (87)
63 3zbh_A ESXA; unknown function, 26.7 2E+02 0.0068 21.4 10.5 61 336-396 13-95 (99)
64 3swf_A CGMP-gated cation chann 26.0 2.2E+02 0.0076 21.7 7.8 31 342-372 21-51 (74)
65 3swf_A CGMP-gated cation chann 25.5 1.7E+02 0.0058 22.4 6.0 41 355-395 9-49 (74)
66 3oja_B Anopheles plasmodium-re 25.5 5.3E+02 0.018 25.9 15.0 17 274-290 458-474 (597)
67 2l5g_B Putative uncharacterize 25.0 58 0.002 22.3 2.9 24 82-105 3-26 (42)
68 1m1j_C Fibrinogen gamma chain; 24.4 3.5E+02 0.012 27.0 9.8 12 281-292 33-44 (409)
69 4aj5_A SKA1, spindle and kinet 24.1 2.7E+02 0.0092 22.1 7.2 70 305-381 13-82 (91)
70 1gl2_B Syntaxin 7; membrane pr 23.7 2.1E+02 0.0072 20.7 9.3 53 338-390 8-60 (65)
71 3t97_C Nuclear pore glycoprote 23.7 76 0.0026 23.6 3.6 44 336-379 16-59 (64)
72 2jqq_A Conserved oligomeric go 23.1 3.8E+02 0.013 24.2 8.7 119 273-393 48-182 (204)
73 1i6z_A BAG-family molecular ch 22.9 2.8E+02 0.0095 23.6 7.4 29 331-359 20-48 (135)
74 2nrj_A HBL B protein; enteroto 22.6 3.4E+02 0.012 26.2 9.2 14 385-398 176-189 (346)
75 3oja_B Anopheles plasmodium-re 22.4 6E+02 0.02 25.5 16.0 35 360-394 544-578 (597)
76 1t3u_A Conserved hypothetical 22.4 2.6E+02 0.0088 21.9 7.0 79 188-292 14-95 (104)
77 2dfs_A Myosin-5A; myosin-V, in 22.3 3.4E+02 0.011 30.6 10.2 44 331-374 969-1012(1080)
78 1hx1_B BAG-1, BAG-family molec 22.2 1.3E+02 0.0045 24.9 5.1 50 345-395 10-59 (114)
79 3pp5_A BRK1, protein brick1; t 21.9 55 0.0019 25.1 2.6 19 204-222 44-62 (73)
80 3p8c_E Probable protein brick1 21.4 57 0.0019 25.1 2.6 18 206-223 53-70 (75)
81 3mq9_A Bone marrow stromal ant 21.3 2.8E+02 0.0096 27.2 8.5 86 305-397 378-469 (471)
82 1hwt_C Protein (heme activator 21.1 61 0.0021 24.0 2.8 20 204-223 57-76 (81)
83 2zsh_B Della protein GAI; plan 21.0 1.5E+02 0.005 24.3 5.1 50 204-264 37-86 (110)
84 1t3j_A Mitofusin 1; coiled coi 20.9 1.3E+02 0.0045 24.2 4.7 52 342-394 36-87 (96)
85 1i6z_A BAG-family molecular ch 20.5 2.7E+02 0.0094 23.6 6.9 47 347-394 22-68 (135)
86 3vkg_A Dynein heavy chain, cyt 20.1 1.4E+03 0.046 29.2 15.5 15 205-219 1910-1924(3245)
87 1vp7_A Exodeoxyribonuclease VI 20.0 2.2E+02 0.0075 22.9 6.0 22 304-325 31-52 (100)
No 1
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=89.12 E-value=3.9 Score=32.73 Aligned_cols=73 Identities=12% Similarity=0.173 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhHHHHHHH
Q psy9591 325 PRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSL------------------LTSLEGKMGSDVERIKQD 386 (399)
Q Consensus 325 P~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~------------------L~~ve~~~~~N~~~v~~n 386 (399)
|.+=+.+..+..+|.........+..++....+....++..+.+ +..+...+.++.+.++..
T Consensus 1 ~~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~ 80 (107)
T 1fxk_A 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR 80 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 56667778888888888888888888887777777666665554 444555677777777777
Q ss_pred HHHHHHHHHhh
Q psy9591 387 VKALDEKIKAL 397 (399)
Q Consensus 387 v~~Le~Ri~~L 397 (399)
++.|+.++..+
T Consensus 81 i~~le~~~~~~ 91 (107)
T 1fxk_A 81 EKTIERQEERV 91 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776655
No 2
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=83.06 E-value=9.3 Score=30.89 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhHHHHHHH
Q psy9591 325 PRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSL------------------LTSLEGKMGSDVERIKQD 386 (399)
Q Consensus 325 P~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~------------------L~~ve~~~~~N~~~v~~n 386 (399)
|.+=+.+..++.+|.........+..++....+....++..+.+ +..+...+.++.+.++..
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~ 85 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVR 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777777777776666666655555443 334445577777777777
Q ss_pred HHHHHHHHHhh
Q psy9591 387 VKALDEKIKAL 397 (399)
Q Consensus 387 v~~Le~Ri~~L 397 (399)
++.|+.++..+
T Consensus 86 i~~le~~~~~l 96 (117)
T 2zqm_A 86 LNALERQEKKL 96 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.68 E-value=0.89 Score=51.73 Aligned_cols=19 Identities=11% Similarity=0.352 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy9591 379 DVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 379 N~~~v~~nv~~Le~Ri~~L 397 (399)
....+...+..|..+|+.+
T Consensus 1145 q~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S 1145 QKRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.35 E-value=31 Score=31.96 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=20.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhCCC
Q psy9591 200 QLNTAAKLTSLEQRLIKLENLLGEH 224 (399)
Q Consensus 200 ~~~~~~~ia~LE~RL~~LE~~lG~~ 224 (399)
.+..+-.+..+|.+|..|+..+|.-
T Consensus 6 ~L~~L~~LQ~lD~~i~~l~~~~~~l 30 (256)
T 3na7_A 6 HLKQLIEISHLDKEIDSLEPLIREK 30 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788899999999999988663
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=77.13 E-value=17 Score=32.04 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy9591 347 LLKELESV 354 (399)
Q Consensus 347 ~L~~Le~~ 354 (399)
.+..++..
T Consensus 91 ~~~~~~~~ 98 (284)
T 1c1g_A 91 RIQLFEEE 98 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 6
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.30 E-value=39 Score=35.06 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 277 YDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQV 356 (399)
Q Consensus 277 i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~ 356 (399)
|..||..|..+++.+.+.++ +..+=++.+|+.|.. |+.. ....-..+.+.-.+|+..+.
T Consensus 62 ltkrINELKnqLEdlsKnsK-------dseqy~k~~~E~Lr~-----------rq~q---~~dNdNtynE~S~ELRRrIq 120 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNK-------DSHSLTTNIMEILRG-----------DFSS---ANNRDNTYNRVSEDLRSRIE 120 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHH-------HHHHHHHHHHHTTSS-----------HHHH---HHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhch-------hHHHHHHHHHHHHHH-----------HHHh---hhccchhHHHHHHHHHHHHH
Confidence 56789999999999954433 333445666666542 2222 22333455566668888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9591 357 DLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKI 394 (399)
Q Consensus 357 ~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri 394 (399)
.|...|.+.-..|..++.++++-+..|+.-=.+|+.+|
T Consensus 121 yLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 121 VLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777766555555555555444444444434444443
No 7
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=74.10 E-value=28 Score=27.03 Aligned_cols=67 Identities=15% Similarity=0.265 Sum_probs=51.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH
Q psy9591 324 VPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG---KMGSDVERIKQDVKALDE 392 (399)
Q Consensus 324 LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~---~~~~N~~~v~~nv~~Le~ 392 (399)
+..|=+.|| +.+++...+...-|..|.+++.++...=.+.+.+++.++. .+..|++++...-+.|+.
T Consensus 5 lSAVeDKLR--rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 5 ISAVSDKLR--WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666 5788888899999999999999999988888888888864 366777776666665553
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.72 E-value=22 Score=33.07 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=43.1
Q ss_pred CCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhHHHHHHHHH
Q psy9591 322 ALVPRTLERLI-ALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK------------MGSDVERIKQDVK 388 (399)
Q Consensus 322 ~~LP~ll~RLr-sL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~------------~~~N~~~v~~nv~ 388 (399)
..+|.-|..|. .+..+......+...+..++..+..+..++...+.-+.+.+.. +..-++..+..+.
T Consensus 28 ~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~ 107 (256)
T 3na7_A 28 REKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSN 107 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 44565555553 3455666666666666666666666666666666666665543 4444455555555
Q ss_pred HHHHHHHh
Q psy9591 389 ALDEKIKA 396 (399)
Q Consensus 389 ~Le~Ri~~ 396 (399)
.||++|..
T Consensus 108 ~lE~eile 115 (256)
T 3na7_A 108 QANREIEN 115 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=73.19 E-value=3.8 Score=46.56 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy9591 87 LQKYQRLQCELKELMDEVSQ 106 (399)
Q Consensus 87 ~qKl~RL~rEveEL~eE~~~ 106 (399)
.+.+..|+.|++++++.+..
T Consensus 856 ~~El~~L~~eL~el~~~L~~ 875 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQK 875 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666555543
No 10
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=70.95 E-value=34 Score=31.62 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy9591 379 DVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 379 N~~~v~~nv~~Le~Ri~~L 397 (399)
+.+.|+..+..+|+||..|
T Consensus 166 ~~e~ie~dL~~~e~~i~~l 184 (235)
T 2odv_A 166 RAGEVERDLDKADSMIRLL 184 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666554
No 11
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=68.92 E-value=23 Score=28.02 Aligned_cols=61 Identities=16% Similarity=0.293 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy9591 327 TLERLIALESLHAQAG-------NFATLLKELES----VQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDV 387 (399)
Q Consensus 327 ll~RLrsL~~LH~~Aa-------~f~~~L~~Le~----~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv 387 (399)
|=+||.+|..|-.... ++.+++..+.+ ....+....+..=..|..|...++.-+..++.||
T Consensus 3 iqERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~LdEni 74 (86)
T 3r84_A 3 IQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENV 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5589999998876644 34444444332 3444555555555666666666666666555554
No 12
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=65.29 E-value=1.2e+02 Score=30.97 Aligned_cols=90 Identities=17% Similarity=0.304 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 277 YDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQV 356 (399)
Q Consensus 277 i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~ 356 (399)
|..||..|...++.+.... .+...-+..+|+.+.. | +...-..=..+.+...+|+..+.
T Consensus 63 v~~rI~kLkn~L~~~s~s~-------~~s~~y~~~~~~~lk~-----------~---~~q~~dndn~~~e~S~eLe~ri~ 121 (491)
T 1m1j_A 63 YSQRIDNIRQQLADSQNKY-------KTSNRVIVETINILKP-----------G---LEGAQQLDENYGHVSTELRRRIV 121 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------THHHHHHHHHHHHHHH-----------H---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc-------chHHHHHHHHHHHHHH-----------H---HhhhccchhHHHHHHHHHHHHHH
Confidence 4678888888888776322 2455566677776653 2 33344445566666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 357 DLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 357 ~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
.|... |...+ .|+.+++.+|+.+=.+|++|.
T Consensus 122 yIK~k----------Vd~qi-~~IrvLq~~l~~q~skIQRLE 152 (491)
T 1m1j_A 122 TLKQR----------VATQV-NRIKALQNSIQEQVVEMKRLE 152 (491)
T ss_dssp HHHHH----------HHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 76654 44555 666666666666666666653
No 13
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.75 E-value=54 Score=32.67 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 371 SLEGKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 371 ~ve~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
+|...|. |+.+++.+|+.+=.+|++|.
T Consensus 128 ~V~~q~~-~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 128 KVIEQVQ-RINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHhH-HHHHHHHHHHHHHHHHHHHH
Confidence 3555566 77777777777666666663
No 14
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=59.33 E-value=12 Score=22.86 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy9591 86 PLQKYQRLQCELKELMDEVSQI 107 (399)
Q Consensus 86 ~~qKl~RL~rEveEL~eE~~~~ 107 (399)
+-||-+||+.|+.-|+=|++++
T Consensus 5 lkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 5689999999999998887654
No 15
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=58.96 E-value=22 Score=26.73 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccchhhcCCHHHHHHHHHHHHhhhc
Q psy9591 86 PLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKL 138 (399)
Q Consensus 86 ~~qKl~RL~rEveEL~eE~~~~k~~~~~~~~~~~~~~~~~l~~L~~~L~~L~~ 138 (399)
+..++..|++|+.+|+.|+..++++. .+....-|.++++.|..
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQD----------eFAKWaKL~Rk~DKl~~ 46 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQD----------NYAKWTKNNRKLDSLDK 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTT----------THHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHH----------HHHHHHHHHHHHHHHHH
Confidence 46789999999999999997665552 46677777777777743
No 16
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=56.28 E-value=97 Score=26.93 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q psy9591 304 ERDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL----------- 372 (399)
Q Consensus 304 ~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~v----------- 372 (399)
..+++..+||.......+ |.+|.++..+.. .....-..+..++....++..+++.....+..+
T Consensus 39 ~~E~~~~~l~~e~~~~~~---~~~vs~~~~~~~---~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~ 112 (152)
T 3a7p_A 39 DKEAHLNELFQDNSGAIG---GNIVSHDDALLN---TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIEN 112 (152)
T ss_dssp ---------------------CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhccCCC---cccccchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777553322 558888765543 333444455555555555555555554444433
Q ss_pred ---HHH----HHHhHHHHHHHHHHHHHHHHhh
Q psy9591 373 ---EGK----MGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 373 ---e~~----~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
|.. =.+|-..|..|+..-..--+++
T Consensus 113 n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 113 NVLQQKLSDLKKEHSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 3458888888888766655544
No 17
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.47 E-value=82 Score=26.19 Aligned_cols=65 Identities=9% Similarity=0.108 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHhHHHHHH
Q psy9591 330 RLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL------------------------EGKMGSDVERIKQ 385 (399)
Q Consensus 330 RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~v------------------------e~~~~~N~~~v~~ 385 (399)
.|+.++.-|..|-.|...-=.+|.. .+-...+.-.+.++..+ +.+|.+|+.-|..
T Consensus 11 ~l~~ik~~h~~AF~~Is~AL~~DE~-g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~ 89 (116)
T 2dl1_A 11 EIKIIREAYKKAFLFVNKGLNTDEL-GQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRT 89 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3556677999999998887777773 33444455555555544 4569999999999
Q ss_pred HHHHHHHHHH
Q psy9591 386 DVKALDEKIK 395 (399)
Q Consensus 386 nv~~Le~Ri~ 395 (399)
++..|+...+
T Consensus 90 RL~~Le~~~~ 99 (116)
T 2dl1_A 90 RLEILEKGLA 99 (116)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHhcCC
Confidence 9998887653
No 18
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=53.05 E-value=63 Score=23.46 Aligned_cols=51 Identities=8% Similarity=0.314 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy9591 339 AQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKA 389 (399)
Q Consensus 339 ~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~ 389 (399)
......+..+..|...=.+|..+++....+|..++..|...-..+....+.
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~r 59 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARR 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788888888899999999999999999999888877766665543
No 19
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.03 E-value=1e+02 Score=25.57 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9591 346 TLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIK 395 (399)
Q Consensus 346 ~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~ 395 (399)
.++..|+.....+.+.-..++..|..+|..+..-+..++..|..||.-+.
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~ 92 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQ 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333433333333333344444444444444444444444444444433
No 20
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.70 E-value=1.3e+02 Score=29.80 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9591 327 TLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKA 396 (399)
Q Consensus 327 ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~ 396 (399)
++++++.-...+.-...+.+-|++++..-.+++.+-...+-.+-.++.++..-+..-...|+.||..|..
T Consensus 385 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (471)
T 3mq9_A 385 ARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITT 454 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555455555555555555555555555555555544444444444444433333444444444443
No 21
>1vda_A FMBP-1, fibroin-modulator-binding-protein-1; tandem repeat, N-CAP, DNA binding, transcription; NMR {Synthetic} PDB: 1wnn_A
Probab=49.68 E-value=5.2 Score=24.21 Aligned_cols=12 Identities=50% Similarity=0.581 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHH
Q psy9591 84 ETPLQKYQRLQC 95 (399)
Q Consensus 84 ET~~qKl~RL~r 95 (399)
|||+||-+||+|
T Consensus 1 esp~qr~~rl~r 12 (26)
T 1vda_A 1 ETPAQRQARLLR 12 (26)
T ss_dssp CCHHHHHHHHTS
T ss_pred CCHHHHHHHHHH
Confidence 789999999976
No 22
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=48.03 E-value=1.1e+02 Score=24.71 Aligned_cols=61 Identities=16% Similarity=0.309 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9591 331 LIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALD 391 (399)
Q Consensus 331 LrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le 391 (399)
|.-++.=|.+..+.-+++.+|.+.-.+|+.-+....+.++.+|.++..-...|+.-.+.|.
T Consensus 13 l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~ 73 (109)
T 3hd7_B 13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 73 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777888888888889999999999999988876666666655555554
No 23
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.20 E-value=90 Score=25.95 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9591 366 QSLLTSLEGKMGSDVERIKQDVKALDEK 393 (399)
Q Consensus 366 ~~~L~~ve~~~~~N~~~v~~nv~~Le~R 393 (399)
+..|..+|..+..-+..++.-|..||.-
T Consensus 65 E~~l~e~e~~~~~~l~~~q~~i~~lE~e 92 (131)
T 3tnu_A 65 ENSLEETKGRYCMQLAQIQEMIGSVEEQ 92 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 24
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=43.61 E-value=14 Score=37.94 Aligned_cols=139 Identities=14% Similarity=0.189 Sum_probs=75.5
Q ss_pred CChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC---CC-CchHH
Q psy9591 253 NSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS---AL-VPRTL 328 (399)
Q Consensus 253 ~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~---~~-LP~ll 328 (399)
..|.+.|..|+.++...+.+. +|.-|+..+..++..|...=.. + ..+--...|..|-.....-.+ |. --+|.
T Consensus 287 ~Gl~~rv~~iE~~Ig~~~~~~--si~~~i~~~~~~I~~i~tivG~-~-~ssGLrg~V~~l~~~iG~~~~gg~pap~tSL~ 362 (487)
T 2bsg_A 287 GGIKQRLTVIETSIGSDDIPS--SIKGQIKDNTTSIESLNGIVGE-N-TSSGLRANVSWLNQIVGTDSSGGQPSPPGSLL 362 (487)
T ss_pred CCeechhhhhhcccCCccccc--hhhccccchhhehhhhheeecc-C-CCcchhhhhHhhhhhcccccCCCCCCCCcchh
Confidence 456666666666666666443 5556666666666666532211 0 112334445554444433322 33 45799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH------------HHHHHHHHHH---HHHHhHHH
Q psy9591 329 ERLIALESLHAQAGNFATLLKELESV-----------QVDLASNLTN------------NQSLLTSLEG---KMGSDVER 382 (399)
Q Consensus 329 ~RLrsL~~LH~~Aa~f~~~L~~Le~~-----------q~~l~~~l~~------------~~~~L~~ve~---~~~~N~~~ 382 (399)
-||..|...|..-+.. +..|+.. ...|...+-. .....+.+++ +...++..
T Consensus 363 gRl~~l~~~~n~~~~~---vqdlQ~~iGn~~sGl~g~v~~~~~~i~Gtn~~~~tv~~~Gi~~tvK~~~t~i~~~~~~i~t 439 (487)
T 2bsg_A 363 NRVSTIETSVSGLNNA---VQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNT 439 (487)
T ss_pred hHHHHHHHHHhhhhHH---HHHHHHHhcCCccchhhhhhhccccccCCCCCCchHhhhhhhhhhhhhhhhhhhcccccch
Confidence 9999999999874444 4444433 3334444433 1111222232 23445667
Q ss_pred HHHHHHHHHHHHHhhc
Q psy9591 383 IKQDVKALDEKIKALK 398 (399)
Q Consensus 383 v~~nv~~Le~Ri~~L~ 398 (399)
++.++..+|..|.+|+
T Consensus 440 ~~~~~~~~~~~~~al~ 455 (487)
T 2bsg_A 440 AKGNISSLQGDVQALQ 455 (487)
T ss_pred hhcccccccchhhHHh
Confidence 7777777777777775
No 25
>3i9y_A Sensor protein; stacked two four-helix bundles, ATP-binding, kinase, nucleotide-binding, phosphoprotein, transferase, transmembrane; 2.16A {Vibrio parahaemolyticus} PDB: 3o1i_A* 3o1h_A* 3o1j_A
Probab=43.17 E-value=89 Score=29.68 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q psy9591 204 AAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARITH 283 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~ 283 (399)
...+..|..+|..|. ..|... +.+..+..+. ..|...|..|...+.-= =..-+.+..|++.
T Consensus 43 ~~~~~~l~~~i~~L~-~~~~~~--~~l~~Le~~v---------------~~ii~~L~~lg~~V~~R-L~L~~~~~~~~~~ 103 (276)
T 3i9y_A 43 FEQLESLLTHIKELG-GESFDS--KLLDALESNV---------------QNVINNLAELGVTVERK-LWLAKEIDTRVEE 103 (276)
T ss_dssp HHHHHHHHHHHHHHH-HTCCCH--HHHHHHHHHH---------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ccCCCh--HHHHHHHHHH---------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 345677888888886 456654 3345443110 12333333333222100 0123445555555
Q ss_pred HHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHhhhh--cC-C-CCCchHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 284 LSNKLDKIIEKAN-SVDPKDSERDQRVNELYELSRS--VD-S-ALVPRTLER----LIALESLHAQAGNFATLLKELESV 354 (399)
Q Consensus 284 L~~ele~l~~kk~-~~~~~~~~~~~KI~eLY~~l~~--~~-~-~~LP~ll~R----LrsL~~LH~~Aa~f~~~L~~Le~~ 354 (399)
+..-..++.+-.. .+...+.--.++|.-+|+.+.. .+ . ..|-.|+++ +.-|..||--|......+..+...
T Consensus 104 l~~aa~~l~eL~~tqvaNa~t~~~A~ls~iYdlie~~~~~~~~~aLD~LiE~DLd~~eRm~ELrl~Al~l~~~i~~~~~~ 183 (276)
T 3i9y_A 104 MRLLSEELEQLTRTQVQNTSTIAVANVTHIYDLLEANKKDQVYQALDALVEVDLDLTERLHELHLLAFKMLNQIEEARTL 183 (276)
T ss_dssp HHHHHHHHHHHTCC---------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555554222 2222345667789999998822 21 1 444444432 222344455555555554443331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9591 355 QVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKAL 390 (399)
Q Consensus 355 q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~L 390 (399)
.. -+-+..++..|..|+..|...|..+
T Consensus 184 ~~---------~~~l~~l~~~~~~~l~il~rRv~~I 210 (276)
T 3i9y_A 184 TN---------VDRIQQIQTAFENNLKIMKRRVLAV 210 (276)
T ss_dssp CC---------HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cc---------hhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 10 1124444556666666666555544
No 26
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=41.71 E-value=1.1e+02 Score=22.96 Aligned_cols=61 Identities=15% Similarity=0.294 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9591 332 IALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDE 392 (399)
Q Consensus 332 rsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~ 392 (399)
.-++.=|.+..+.-..+.+|.+.-.+|+.-+....+.|+.+|.++..-...|+.-...|..
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 63 (77)
T 1jth_B 3 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888889999999999999999999999998877777777666666643
No 27
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=41.11 E-value=74 Score=25.72 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=41.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Q psy9591 323 LVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK-MGSDVERIKQDVKALD 391 (399)
Q Consensus 323 ~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~-~~~N~~~v~~nv~~Le 391 (399)
.+..++.+|-+|-. .+ ...+..+......|..+|...+..|...+.. ....=..++.|++.|-
T Consensus 2 ~v~~ll~KL~~ll~--~E----~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vr 65 (115)
T 3qfl_A 2 AISNLIPKLGELLT--EE----FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVR 65 (115)
T ss_dssp TTCSHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--HH----HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 46678888887632 22 3456667777777788888888888777653 2223356777776653
No 28
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=40.93 E-value=48 Score=26.63 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccchhhcCCHHHHHHHHHHHHhhhc
Q psy9591 86 PLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKL 138 (399)
Q Consensus 86 ~~qKl~RL~rEveEL~eE~~~~k~~~~~~~~~~~~~~~~~l~~L~~~L~~L~~ 138 (399)
...++..|++|+-+|+.|+..++++. .+....-|.+++|.|..
T Consensus 28 ~~~~~~~lk~E~~~lk~E~~stSaQD----------EFAKWAKL~Rk~DKl~~ 70 (94)
T 3vlc_E 28 LSKKYLAKVKERHELKEFNNSISAQD----------NYAKWTKNNRKLDSLDK 70 (94)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSCTTT----------CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHH----------HHHHHHHHHHHHHHHHH
Confidence 46889999999999999998666553 56777788888887754
No 29
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=40.77 E-value=78 Score=28.12 Aligned_cols=50 Identities=6% Similarity=0.163 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 348 LKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 348 L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
...|+.........+..-..-|+.+...+.+++..++.++..|+.++.++
T Consensus 40 q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 40 QTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333333334444444455555666666666666666666644443
No 30
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.74 E-value=1.4e+02 Score=30.49 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=10.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhh
Q psy9591 376 MGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 376 ~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
+..|+..++..+..|..+|.+|
T Consensus 166 ~~~~i~~L~~~~~~l~~ki~~l 187 (464)
T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKL 187 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 31
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=40.36 E-value=1.8e+02 Score=25.08 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=11.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHhh
Q psy9591 376 MGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 376 ~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
....++-|-.|...+..+++.|
T Consensus 141 yg~~~eell~~~~~~~~eL~~l 162 (175)
T 4abx_A 141 YGPTLEDVVEFGAQAAEELAGL 162 (175)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555443
No 32
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=40.31 E-value=56 Score=22.97 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcC
Q psy9591 365 NQSLLTSLEGKMGSDVERIKQDVKALDEKIKALKK 399 (399)
Q Consensus 365 ~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~k 399 (399)
.+.+|..++..|..=-..|-+.+.+.-.||..|.|
T Consensus 11 vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~ 45 (48)
T 3ci9_A 11 VQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 46778888988888888888888888888888764
No 33
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=40.27 E-value=57 Score=26.14 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhccccccccchhhcCCHHHHHHHHHHHHhhhc
Q psy9591 85 TPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKL 138 (399)
Q Consensus 85 T~~qKl~RL~rEveEL~eE~~~~k~~~~~~~~~~~~~~~~~l~~L~~~L~~L~~ 138 (399)
-...++..|++|+-+|+.|+..+.++. .+....-|.+++|.|..
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~stSaQD----------eFAKWaKL~Rk~DKl~~ 63 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSISAQD----------NYAKWTKNNRKLDSLDK 63 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCTTT----------CHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhccchHH----------HHHHHHHHHHHHHHHHH
Confidence 358899999999999999997665552 45666777777776643
No 34
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=40.07 E-value=2.3e+02 Score=26.42 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=65.6
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHHHHH---
Q psy9591 259 TDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALE--- 335 (399)
Q Consensus 259 l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~--- 335 (399)
|..+.++-..|. ..|.+-+.||..+...-++|...... ....-..++.+|-..-..+.. ....|-..|.
T Consensus 43 l~~~~~kh~~le-~El~a~e~~v~~v~~~g~~L~~~~hp---~~~~I~~r~~~L~~~W~~L~~----l~~~R~~~L~~a~ 114 (283)
T 3pe0_A 43 MTAKKESYSALM-RELELKEKKIKELQNAGDRLLREDHP---ARPTVESFQAALQTQWSWMLQ----LCCCIEAHLKENA 114 (283)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSCCT---THHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHcCCC---ChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 444555555564 67788888999999999999865543 223344444444332222111 1222222222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 336 ---SLHAQAGNFATLLKELESVQVDLAS-----NLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 336 ---~LH~~Aa~f~~~L~~Le~~q~~l~~-----~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
.++.+|..+-.-|..++.....+.+ .+..-+.+|.+.+ .|...+......|..|..+-..|
T Consensus 115 ~~~qF~~da~e~e~Wl~~~~e~~~~~~s~d~g~d~~s~~~LLkkh~-~le~~l~~~~~~i~~L~~~a~~l 183 (283)
T 3pe0_A 115 AYFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQ-DEKEQLNEYKGHLSGLAKRAKAV 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHTCCHH-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 2233333333333222222222211 2333333333332 47777888888888888776655
No 35
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=38.98 E-value=1.4e+02 Score=23.55 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 342 GNFATLLKELESVQVDLASNLTNNQSLLTSLEG------------------KMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 342 a~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~------------------~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
...-+.+..+......+..++..++.+++.++. ...+-+..++.+++.|+.+|+.|
T Consensus 16 ~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~l 89 (117)
T 2zqm_A 16 ESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNAL 89 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555555555555432 15555555555666666665555
No 36
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=38.36 E-value=1.3e+02 Score=22.88 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9591 341 AGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDE 392 (399)
Q Consensus 341 Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~ 392 (399)
....+..+..|...=.+|..+|+....+|..++..|..+-..+....+.+..
T Consensus 21 Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~ 72 (82)
T 2nps_D 21 LELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAK 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888999999999999999999988887777776665543
No 37
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.26 E-value=1.4e+02 Score=23.24 Aligned_cols=57 Identities=11% Similarity=0.200 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 342 GNFATLLKELESVQVDLASNLTNNQSLLTSLEG------------------KMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 342 a~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~------------------~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
...-+.+..+......+..+++.++.+++.++. ...+-...++.+++.|+.+|+.|.
T Consensus 11 ~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le 85 (107)
T 1fxk_A 11 QQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666666666653 266667777777777777777664
No 38
>1vd8_A FMBP-1, fibroin-modulator-binding-protein-1; tandem repeat, N-CAP, DNA binding, transcription; NMR {Synthetic} PDB: 1wnm_A
Probab=36.44 E-value=11 Score=22.68 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHH
Q psy9591 84 ETPLQKYQRLQC 95 (399)
Q Consensus 84 ET~~qKl~RL~r 95 (399)
|+|+||-.||+|
T Consensus 1 espeqratrlkr 12 (26)
T 1vd8_A 1 ESPEQRATRLKR 12 (26)
T ss_dssp CCHHHHHHHHTC
T ss_pred CCHHHHHHHHHH
Confidence 689999999876
No 39
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.43 E-value=95 Score=30.89 Aligned_cols=87 Identities=18% Similarity=0.065 Sum_probs=51.1
Q ss_pred HHHHhhhhcCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy9591 311 ELYELSRSVDS-ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKA 389 (399)
Q Consensus 311 eLY~~l~~~~~-~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~ 389 (399)
+....+..+.. .-+-...++..++..+|....+-.....+++..+..+....+.-.+-.+.+++........+......
T Consensus 385 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 385 ELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 44444444444 33344445556667777777777777777777777776666666666666666555555555555555
Q ss_pred HHHHHHhh
Q psy9591 390 LDEKIKAL 397 (399)
Q Consensus 390 Le~Ri~~L 397 (399)
+++..+.+
T Consensus 465 ~~~~~~~~ 472 (487)
T 3oja_A 465 LASANATL 472 (487)
T ss_dssp HHHHHHHH
T ss_pred hHhcccHH
Confidence 55444443
No 40
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=34.97 E-value=23 Score=25.88 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHhCCC
Q psy9591 204 AAKLTSLEQRLIKLENLLGEH 224 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~~ 224 (399)
..++..||.||..||..|..-
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999988653
No 41
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=34.81 E-value=1.3e+02 Score=21.79 Aligned_cols=50 Identities=12% Similarity=0.286 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy9591 339 AQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVK 388 (399)
Q Consensus 339 ~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~ 388 (399)
......+..+..|...=..|..+|.....+|..++..|..+-..|....+
T Consensus 10 ~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~ 59 (66)
T 1n7s_D 10 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQ 59 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44566778888888889999999999999999999887776655555443
No 42
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=34.44 E-value=66 Score=25.82 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhccc
Q psy9591 83 KETPLQKYQRLQCELKELMDEVSQIKEP 110 (399)
Q Consensus 83 ~ET~~qKl~RL~rEveEL~eE~~~~k~~ 110 (399)
.=.|+||..+|+..|.+|..++++...+
T Consensus 10 ~LPpeqRkkkL~~Ki~el~~ei~ke~~~ 37 (98)
T 2ke4_A 10 HLPPEQQRKRLQQQLEERSRELQKEVDQ 37 (98)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999755433
No 43
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=33.59 E-value=1.2e+02 Score=21.09 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy9591 366 QSLLTSLEGK 375 (399)
Q Consensus 366 ~~~L~~ve~~ 375 (399)
+..|+.++..
T Consensus 11 e~~ld~LqTr 20 (46)
T 3swy_A 11 GSSLDTLQTR 20 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 44
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=33.57 E-value=1.4e+02 Score=21.88 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9591 332 IALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALD 391 (399)
Q Consensus 332 rsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le 391 (399)
.-++.=|.+..+.-..+.+|.+.-.+|..-+....+.|+.+|.++..-...|+.-...|.
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 62 (69)
T 3b5n_B 3 AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTD 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777788888888888999999999999999999877666666666555554
No 45
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=32.55 E-value=1.5e+02 Score=21.84 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9591 338 HAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALD 391 (399)
Q Consensus 338 H~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le 391 (399)
|.+....-..+.+|.+.-.+|+.-+....+.|+.+|.++..-...|+.-...|.
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~ 58 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQ 58 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566667777788888888888888889999998877666666665555554
No 46
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=32.35 E-value=96 Score=25.98 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=45.3
Q ss_pred chhHHHHHHHHHhhhhcCC------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 303 SERDQRVNELYELSRSVDS------ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSL 372 (399)
Q Consensus 303 ~~~~~KI~eLY~~l~~~~~------~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~v 372 (399)
..-+.||.++....--+++ .++-+++.||+.+ |...+..|..|...-..|..-.=+|+.+|+-+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~------aN~T~~aL~~L~~q~Tslr~~~LQNRraLD~L 86 (125)
T 4g2k_A 17 KQIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRL------ANQTAKSLELLLRVTTEERTFSLINRHAIDFL 86 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566655444433333 4556677777665 67778889999999999999999999988765
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.94 E-value=1.5e+02 Score=30.87 Aligned_cols=48 Identities=15% Similarity=0.269 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 350 ELESVQVDLASNLTNNQSLL-TSLEGKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 350 ~Le~~q~~l~~~l~~~~~~L-~~ve~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
+.+....++..+|+.--.-| .+|+..+ .|+.+++.+|+++=.+|++|.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555533333 3466667 899999999999999998884
No 48
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=31.76 E-value=53 Score=28.26 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=44.8
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhc-------CCCCCCCchhHHHHHHHHHhhhhcCC---CCCchHHHHH
Q psy9591 262 LRAQINLIDAAHCDAYDARITHLSNKLDKIIEKA-------NSVDPKDSERDQRVNELYELSRSVDS---ALVPRTLERL 331 (399)
Q Consensus 262 L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk-------~~~~~~~~~~~~KI~eLY~~l~~~~~---~~LP~ll~RL 331 (399)
|.++|.+| ...||..+.|+...+++++.+.+.. +.........+.||..|=..|..... ..--..=+=-
T Consensus 1 l~Rri~ll-EeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~ 79 (147)
T 2b9c_A 1 MNRRIQLV-EEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVA 79 (147)
T ss_dssp -----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45677777 3455666666666666666554311 11000112344456555444443221 0000000112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 332 IALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK 375 (399)
Q Consensus 332 rsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~ 375 (399)
|-|..+..+-..+-..+...+....++..+|+.....|..+|.+
T Consensus 80 RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ 123 (147)
T 2b9c_A 80 RKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDK 123 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 23334444444445555555555555555555555555555443
No 49
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=31.74 E-value=2e+02 Score=29.38 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=21.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy9591 372 LEGKMGSDVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 372 ve~~~~~N~~~v~~nv~~Le~Ri~~L~ 398 (399)
+..++.+|+.++..-+..+..+|++|.
T Consensus 157 ~~~~~~~~i~~l~~~~~~~~~~i~~l~ 183 (461)
T 3ghg_B 157 VNSNIPTNLRVLRSILENLRSKIQKLE 183 (461)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 444688888888888888888888774
No 50
>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and melibiose metabolism, dimerization domain, coiled-coil dimeric; NMR {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=31.65 E-value=19 Score=26.16 Aligned_cols=19 Identities=47% Similarity=0.546 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHhCC
Q psy9591 205 AKLTSLEQRLIKLENLLGE 223 (399)
Q Consensus 205 ~~ia~LE~RL~~LE~~lG~ 223 (399)
+.+.+.|.|+.+||..++-
T Consensus 3 AHLTeVEnRl~qLE~ll~~ 21 (57)
T 1hbw_A 3 AHLTEVESRLERLEQLFLL 21 (57)
T ss_dssp CCCHHHHHHHHHHHHHCSS
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5678999999999999874
No 51
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=30.79 E-value=1.6e+02 Score=21.53 Aligned_cols=58 Identities=16% Similarity=0.310 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9591 333 ALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKAL 390 (399)
Q Consensus 333 sL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~L 390 (399)
-++.=|.+..+.-..+.+|.+.-.+|..-+....+.|+.+|.++..-...|+.-...|
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L 63 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDT 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777788888888888888898999999999877666666665555444
No 52
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=30.68 E-value=1.4e+02 Score=27.88 Aligned_cols=88 Identities=13% Similarity=0.189 Sum_probs=61.8
Q ss_pred HHHHhhhhcC-C-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Q psy9591 311 ELYELSRSVD-S-ALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG----------KMGS 378 (399)
Q Consensus 311 eLY~~l~~~~-~-~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~----------~~~~ 378 (399)
++++.-...- | .+=|..+.|-.++..|..+.......|.-|+=+..-...+|.....-+..+.. .+.+
T Consensus 126 ~~~e~~~~f~lp~gi~~e~I~~SYSl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEq 205 (242)
T 3uux_B 126 ELPNFQDSFLIPPGVETAAISSSYSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQ 205 (242)
T ss_dssp -------------CCCCCGGGGSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCHHHhcccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444332 2 66788999999999999999999999999988888778887776655544432 4778
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q psy9591 379 DVERIKQDVKALDEKIKALK 398 (399)
Q Consensus 379 N~~~v~~nv~~Le~Ri~~L~ 398 (399)
|---++..+..++.||+-++
T Consensus 206 dEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 206 NQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887553
No 53
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=30.62 E-value=66 Score=23.19 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHhh
Q psy9591 360 SNLTNNQSLLTSLEGK-MGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 360 ~~l~~~~~~L~~ve~~-~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
.--+.|+++-.++|+- =...+..|+..|+.||+.|.+|
T Consensus 29 elkkkweelkkkieelggggevkkveeevkkleeeikkl 67 (67)
T 1lq7_A 29 ELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhcC
Confidence 3445699998888873 4456778889999999998875
No 54
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.48 E-value=1.7e+02 Score=29.11 Aligned_cols=88 Identities=17% Similarity=0.222 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhhhhcCC------CCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 304 ERDQRVNELYELSRSVDS------ALVPRTLERLIA-LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKM 376 (399)
Q Consensus 304 ~~~~KI~eLY~~l~~~~~------~~LP~ll~RLrs-L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~ 376 (399)
+...+|++|=+.|..+.. ..+=.+.+.|+- +......=..|.+...+|++.+..|+..+...=..|..++
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq--- 140 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQ--- 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---
Confidence 566677776666655533 344444444443 2222333345666666777777777776666444555444
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q psy9591 377 GSDVERIKQDVKALDEKIK 395 (399)
Q Consensus 377 ~~N~~~v~~nv~~Le~Ri~ 395 (399)
.|++.+-..|+.||..|+
T Consensus 141 -~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 141 -KNVRDQLVDMKRLEVDID 158 (390)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 444445555566666653
No 55
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=29.83 E-value=1.4e+02 Score=20.74 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9591 344 FATLLKELESVQVDLASNL 362 (399)
Q Consensus 344 f~~~L~~Le~~q~~l~~~l 362 (399)
|+..|.+.++.|..|...|
T Consensus 21 ~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 21 FARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 56
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=29.82 E-value=1.9e+02 Score=22.24 Aligned_cols=58 Identities=10% Similarity=0.318 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 336 SLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 336 ~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
..-......+..+..|...=.+|..+|+....+|..++..|..+-..|... -.|+.+|
T Consensus 26 eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~----~~rl~~l 83 (87)
T 1sfc_D 26 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEA----NQRATKM 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHH
Confidence 344455667777888888888999999999999999998776655555444 4455444
No 57
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=29.53 E-value=2.2e+02 Score=24.70 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCCCchhH-HHHHHHHHHHHHHHHHHhc
Q psy9591 256 VENTDWLRAQINLIDAAHCDA-YDARITHLSNKLDKIIEKA 295 (399)
Q Consensus 256 ~~~l~~L~~qlslL~~~~Ld~-i~~Rl~~L~~ele~l~~kk 295 (399)
++.|..+.++...+. ..+.+ -..||..+..-.++|....
T Consensus 33 l~~v~~l~~k~~~f~-~el~~~~~~~v~~v~~~~~~L~~~~ 72 (218)
T 3edu_A 33 FDHVTLLRDKFRDFA-RETGAIGQERVDNVNAFIERLIDAG 72 (218)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC
Confidence 456666777776664 36666 3678888888888887543
No 58
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=29.44 E-value=3.3e+02 Score=24.87 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHh
Q psy9591 340 QAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG--KMGSDVERIKQDVKALDEKIKA 396 (399)
Q Consensus 340 ~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~--~~~~N~~~v~~nv~~Le~Ri~~ 396 (399)
.+..+...+..|...-..+.......+..|..... .|...+..+..|+...+..|..
T Consensus 186 ~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~~~~~F~~~~~~l~~Wl~~~~~~l~~ 244 (323)
T 3edv_A 186 KADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEA 244 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555555555555555555555555544332 4888999999999998887763
No 59
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=28.93 E-value=2.1e+02 Score=22.54 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH--------HHHHHHHHHHHHHHHhHHHHHHHHH
Q psy9591 333 ALESLHAQAGNFATLLKELESV----------------QVDLASNLT--------NNQSLLTSLEGKMGSDVERIKQDVK 388 (399)
Q Consensus 333 sL~~LH~~Aa~f~~~L~~Le~~----------------q~~l~~~l~--------~~~~~L~~ve~~~~~N~~~v~~nv~ 388 (399)
.++.-|..|-.|...-=.+|.. +.++...|. .|+.+ ..++.+|.+|+..|+..+.
T Consensus 8 ~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~A-r~LQ~KM~~nL~~v~~RL~ 86 (89)
T 3eab_A 8 RVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERA-RRLQAKMMTNLVMAKDRLQ 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3566788888887776666666 222222222 24444 5677889999999988887
Q ss_pred HHH
Q psy9591 389 ALD 391 (399)
Q Consensus 389 ~Le 391 (399)
.||
T Consensus 87 ~Le 89 (89)
T 3eab_A 87 LLE 89 (89)
T ss_dssp HHC
T ss_pred hcC
Confidence 764
No 60
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=28.85 E-value=1.1e+02 Score=24.22 Aligned_cols=66 Identities=8% Similarity=0.157 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 283 HLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS---ALVPRTLERLIALESLHAQAGNFATLLKELE 352 (399)
Q Consensus 283 ~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~---~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le 352 (399)
...+-++++.... +.+.-.+.+|++||+.+..+.| -.|-.-..|...|-.+|..-..+...-++|=
T Consensus 13 lF~~lv~~~k~~~----~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~lL 81 (91)
T 2pjw_V 13 MFASLVEKMKSRP----LNEILEDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDRLL 81 (91)
T ss_dssp HHHHHHHHHHTCS----CSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----cccccCCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445554332 3345577899999999999988 7777778888888888888777777666653
No 61
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=28.35 E-value=1.4e+02 Score=24.77 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 331 LIALESLHAQAGNFATLLKELESVQVDLAS 360 (399)
Q Consensus 331 LrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~ 360 (399)
|+.|+.+|......+..|+.++.....|+.
T Consensus 10 lK~L~~veksv~~~~kkl~~~~~el~~iek 39 (114)
T 1hx1_B 10 LKKLKHLEKSVEKIADQLEELNKELTGIQQ 39 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777666666554
No 62
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=27.55 E-value=2.1e+02 Score=22.07 Aligned_cols=57 Identities=14% Similarity=0.360 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 337 LHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 337 LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
+-......+..|..|...=.+|..+|......|..++..+..+-..|.. -..|+.+|
T Consensus 28 qD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~----~n~r~~kl 84 (87)
T 1l4a_D 28 MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDE----ANKKATKL 84 (87)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTH----HHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3445666777788888888899999999999999999877665554443 34455554
No 63
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=26.69 E-value=2e+02 Score=21.44 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHH---HHHhHHHHHHHHHHHHHH
Q psy9591 336 SLHAQAGNFATLLKELESVQVDLASNLTN-------------------NQSLLTSLEGK---MGSDVERIKQDVKALDEK 393 (399)
Q Consensus 336 ~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~-------------------~~~~L~~ve~~---~~~N~~~v~~nv~~Le~R 393 (399)
.|+.-|..|...-.+|+.....|...+.. |...+.++.+. +...+..+...+...|..
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~~ 92 (99)
T 3zbh_A 13 ELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQ 92 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444444433 44444444432 445555555555555655
Q ss_pred HHh
Q psy9591 394 IKA 396 (399)
Q Consensus 394 i~~ 396 (399)
++.
T Consensus 93 ~a~ 95 (99)
T 3zbh_A 93 IAS 95 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 64
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.02 E-value=2.2e+02 Score=21.74 Aligned_cols=31 Identities=39% Similarity=0.528 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 342 GNFATLLKELESVQVDLASNLTNNQSLLTSL 372 (399)
Q Consensus 342 a~f~~~L~~Le~~q~~l~~~l~~~~~~L~~v 372 (399)
..|+..|.+.+..|..|...|.+.+.-+..+
T Consensus 21 TrfARLLaEy~ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 21 TRFARILAEYESMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3566677777777777777766666665554
No 65
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=25.52 E-value=1.7e+02 Score=22.39 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9591 355 QVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIK 395 (399)
Q Consensus 355 q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~ 395 (399)
...|.+.++..+.=+..+=..+.+.-..++.+|..||.++.
T Consensus 9 v~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333333333333344445555555555555554
No 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.46 E-value=5.3e+02 Score=25.90 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy9591 274 CDAYDARITHLSNKLDK 290 (399)
Q Consensus 274 Ld~i~~Rl~~L~~ele~ 290 (399)
++.+...++.|..+...
T Consensus 458 ~~~~~~~i~~l~~~~~~ 474 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQ 474 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 67
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.02 E-value=58 Score=22.30 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q psy9591 82 EKETPLQKYQRLQCELKELMDEVS 105 (399)
Q Consensus 82 ~~ET~~qKl~RL~rEveEL~eE~~ 105 (399)
.+|-+.||+.|+-+|++--++.+.
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~ 26 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQIS 26 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999988776654
No 68
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.35 E-value=3.5e+02 Score=27.01 Aligned_cols=12 Identities=17% Similarity=-0.017 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q psy9591 281 ITHLSNKLDKII 292 (399)
Q Consensus 281 l~~L~~ele~l~ 292 (399)
-+.+-+++..|+
T Consensus 33 e~~V~~~l~~LE 44 (409)
T 1m1j_C 33 RLTTDGELLEIE 44 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhcchhHHHHHH
Confidence 334555555554
No 69
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.14 E-value=2.7e+02 Score=22.07 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy9591 305 RDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVE 381 (399)
Q Consensus 305 ~~~KI~eLY~~l~~~~~~~LP~ll~RLrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~ 381 (399)
-..||..++.+|.-+.-...|.+= ..|+.|-.+.--.-..|+.+|.....-....+. |+.++.+|.++.+
T Consensus 13 ineKIs~ikk~L~Lr~~gqdP~lk---~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~~s----LKEL~~s~e~d~k 82 (91)
T 4aj5_A 13 VNEKIGNIKKTLSLRNCGQEPTLK---TVLNKIGDEIIVINELLNKLELEIQYQEQTNNS----LKELCESLEEDYK 82 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHhcccChhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 456888888888776554445432 345666667777777777777655444333333 3344444444433
No 70
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=23.75 E-value=2.1e+02 Score=20.68 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9591 338 HAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKAL 390 (399)
Q Consensus 338 H~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~L 390 (399)
|.+....-..+.+|.+.-.+|..-+....+.|+.+|.++..-...|+.-...|
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL 60 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQL 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667777777788888888888888888877666555555544444
No 71
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=23.74 E-value=76 Score=23.59 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9591 336 SLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSD 379 (399)
Q Consensus 336 ~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N 379 (399)
.||.+...+-..=..|++...-+..+=+..+..|..+|+.++++
T Consensus 16 ~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~~~ 59 (64)
T 3t97_C 16 SLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKEQ 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444433333333344444444333344445555555554443
No 72
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=23.12 E-value=3.8e+02 Score=24.21 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=65.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCC----CCchhHHHHHHHHHhhhhcCC-CCCchHHHHHHHHHHHHHHHHH----
Q psy9591 273 HCDAYDARITHLSNKLDKIIEKANSVDP----KDSERDQRVNELYELSRSVDS-ALVPRTLERLIALESLHAQAGN---- 343 (399)
Q Consensus 273 ~Ld~i~~Rl~~L~~ele~l~~kk~~~~~----~~~~~~~KI~eLY~~l~~~~~-~~LP~ll~RLrsL~~LH~~Aa~---- 343 (399)
.|..+..-|.....++.++..+.-..+. ..-+...|+++||+.|..... +..=.+-.||- +.||.-+..
T Consensus 48 eLQ~v~~Dl~~F~~QL~qL~~~~i~~Tre~v~d~l~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs--~sLh~mC~~~pld 125 (204)
T 2jqq_A 48 NLEKTQSDLQKFMTQLDHLIKDDISNTQEIIKDVLEYLKKLDEIYGSLRNHSQLTEALSLGKRLS--KSLHEMCGIEPLE 125 (204)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHTCSSSSHHHHHHHHHHHHH--HHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHhCCCCCc
Confidence 4555666667777777777654332110 123566788888887766554 33333444443 356665544
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9591 344 ---FATLLKELESVQVDLASNLTNNQ----SLLTSLEGKMGSDVERIKQDVKALDEK 393 (399)
Q Consensus 344 ---f~~~L~~Le~~q~~l~~~l~~~~----~~L~~ve~~~~~N~~~v~~nv~~Le~R 393 (399)
.+..+.+|-+.......-+.... -.|..+...|.+++.++.--++-|-+|
T Consensus 126 ~eLc~~l~~qL~~L~~~~~~ll~~l~dl~Sp~l~h~RN~yq~i~q~Fqi~lk~Ltdk 182 (204)
T 2jqq_A 126 EEICSGLIEQLYKLITASRRILESCADSNSPYIHHLRNDYQDLLQEFQISLKILTEK 182 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333333333333333322 235666677999999999988888775
No 73
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=22.91 E-value=2.8e+02 Score=23.59 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 331 LIALESLHAQAGNFATLLKELESVQVDLA 359 (399)
Q Consensus 331 LrsL~~LH~~Aa~f~~~L~~Le~~q~~l~ 359 (399)
|+.|..++..+...+..|+.++.....|+
T Consensus 20 lKkL~dveksv~~~~k~l~~l~~el~~ie 48 (135)
T 1i6z_A 20 LKKLKDLEVSAEKIANHLQELNKELSGIQ 48 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444443
No 74
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=22.61 E-value=3.4e+02 Score=26.18 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhc
Q psy9591 385 QDVKALDEKIKALK 398 (399)
Q Consensus 385 ~nv~~Le~Ri~~L~ 398 (399)
+.+..|..+|+.++
T Consensus 176 ~~I~~Lq~eI~~l~ 189 (346)
T 2nrj_A 176 ADVDADQKRLEEVL 189 (346)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHH
Confidence 34456666666553
No 75
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.44 E-value=6e+02 Score=25.47 Aligned_cols=35 Identities=6% Similarity=-0.056 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9591 360 SNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKI 394 (399)
Q Consensus 360 ~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri 394 (399)
.++..++.-++...+.+.+-.+.+..+-++|.+.+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333333333333333333333
No 76
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=22.36 E-value=2.6e+02 Score=21.89 Aligned_cols=79 Identities=11% Similarity=0.218 Sum_probs=47.2
Q ss_pred cceecccchh-HHHhhhhhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHH
Q psy9591 188 VRYQLGLQSQ-QAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQI 266 (399)
Q Consensus 188 vtye~~~~~~-~~~~~~~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~ql 266 (399)
-.|.+..++. ...+..+ +..++.|+..|....|.-+. +++. ++.+|+--..-+
T Consensus 14 ~~Y~l~~~~~~ee~l~~a--A~~vd~~~~~i~~~~~~~~~-~r~~-----------------------vmaALnladel~ 67 (104)
T 1t3u_A 14 KEYCINCPDDERANLESA--ARYLDGKMREIRSSGKVIGA-DRVA-----------------------VMAALNITHDLL 67 (104)
T ss_dssp EEEEECCCTTTHHHHHHH--HHHHHHHHHHHHTTTCSCSH-HHHH-----------------------HHHHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHH--HHHHHHHHHHHHHHcCCCCH-HHHH-----------------------HHHHHHHHHHHH
Confidence 3566666553 3333333 35579999999988766552 2222 444444333333
Q ss_pred hhcC--CCchhHHHHHHHHHHHHHHHHH
Q psy9591 267 NLID--AAHCDAYDARITHLSNKLDKII 292 (399)
Q Consensus 267 slL~--~~~Ld~i~~Rl~~L~~ele~l~ 292 (399)
.+=. ...+..++.||..|...++..-
T Consensus 68 ~~~~~~~~~~~~~~~~i~~L~~~le~aL 95 (104)
T 1t3u_A 68 HRKERLDQESSSTRERVRELLDRVDRAL 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 1247788999999999998764
No 77
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.33 E-value=3.4e+02 Score=30.55 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 331 LIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG 374 (399)
Q Consensus 331 LrsL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~ 374 (399)
+..|+.+..+....-..+..|+...+++..++....+-.+.+|+
T Consensus 969 l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555666666666555555554444444433
No 78
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=22.21 E-value=1.3e+02 Score=24.85 Aligned_cols=50 Identities=22% Similarity=0.241 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9591 345 ATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIK 395 (399)
Q Consensus 345 ~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~ 395 (399)
-..|..+++....+...+...+.-|..+|+.|-. .+.+...++.|+.||.
T Consensus 10 lK~L~~veksv~~~~kkl~~~~~el~~iekGFL~-kel~~eal~kldKrik 59 (114)
T 1hx1_B 10 LKKLKHLEKSVEKIADQLEELNKELTGIQQGFLP-KDLQAEALCKLDRRVK 59 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC-HHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cHhHHHHHHHHHHHHH
Confidence 4568889999999999999999999999987532 3344455555555554
No 79
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=21.87 E-value=55 Score=25.07 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q psy9591 204 AAKLTSLEQRLIKLENLLG 222 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG 222 (399)
-.|++.|+.||..||..|.
T Consensus 44 e~KLa~ln~kL~~lE~~L~ 62 (73)
T 3pp5_A 44 RNKLSDLNEKLTILDRQVD 62 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776653
No 80
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=21.41 E-value=57 Score=25.13 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHhCC
Q psy9591 206 KLTSLEQRLIKLENLLGE 223 (399)
Q Consensus 206 ~ia~LE~RL~~LE~~lG~ 223 (399)
|+..||++|.-||+.|.+
T Consensus 53 KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 53 KLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444455555555555544
No 81
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.26 E-value=2.8e+02 Score=27.24 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhhhhcCC-----CCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 305 RDQRVNELYELSRSVDS-----ALVPRTLERLI-ALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGS 378 (399)
Q Consensus 305 ~~~KI~eLY~~l~~~~~-----~~LP~ll~RLr-sL~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~ 378 (399)
-..+|+++++.+..-.. .+|-.=|+|++ .|..+..+|+.+.-++-.|. ..+.....+-+.-++.+| .
T Consensus 378 ~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~ 450 (471)
T 3mq9_A 378 AQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM---ASLDAEKAQGQKKVEELE----G 450 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH---HHHHHHHHHHHHHHHHHH----H
Confidence 34455555544443211 44555555554 46667777777766655442 223333333222222222 2
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy9591 379 DVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 379 N~~~v~~nv~~Le~Ri~~L 397 (399)
-+...+..++.++..|+.+
T Consensus 451 ~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 451 EITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555544
No 82
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=21.09 E-value=61 Score=24.01 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHhCC
Q psy9591 204 AAKLTSLEQRLIKLENLLGE 223 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~ 223 (399)
...+..|+.||..||..|..
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~ 76 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999998864
No 83
>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B*
Probab=20.99 E-value=1.5e+02 Score=24.30 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHH
Q psy9591 204 AAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRA 264 (399)
Q Consensus 204 ~~~ia~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~ 264 (399)
.+.++++=+||.+||.++|.... +.++.|..|-. .-.|..|...|+.+=.
T Consensus 37 sSDma~vAQkLEqLE~vmg~a~~-dgls~LasDTV----------HyNPSDLs~WvesMLs 86 (110)
T 2zsh_B 37 SSEMADVAQKLEQLEVMMSNVQE-DDLSQLATETV----------HYNPAELYTWLDSMLT 86 (110)
T ss_dssp GGGHHHHHHHHHHHHHHHTTC--------CHHHHT----------TSCTTBHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccccc-hhHHHhhhhhh----------cCChHHHHHHHHHHHH
Confidence 45667788999999999996541 33556543211 2456777776655533
No 84
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.88 E-value=1.3e+02 Score=24.15 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9591 342 GNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKI 394 (399)
Q Consensus 342 a~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri 394 (399)
..|+..=..++....+|..+|++.+.-+..+|.. ..+.+++.+...-|+..+
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~i-qs~aK~LRnKA~~L~~eL 87 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKM-QNNSKLLRNKAVQLESEL 87 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHH
Confidence 3455555566777777777777777777776653 233334443333344333
No 85
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=20.53 E-value=2.7e+02 Score=23.61 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9591 347 LLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKI 394 (399)
Q Consensus 347 ~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri 394 (399)
-|..++.....+...+..++.-|..+++.|-.. ..+...++.|+.||
T Consensus 22 kL~dveksv~~~~k~l~~l~~el~~iekGFL~k-~l~~ea~~kl~Kri 68 (135)
T 1i6z_A 22 KLKDLEVSAEKIANHLQELNKELSGIQQGFLAK-ELQAEALCKLDRKV 68 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-hhhhhHHHHHHHHH
Confidence 677788888888888888888888888876432 22223344444444
No 86
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.08 E-value=1.4e+03 Score=29.23 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHH
Q psy9591 205 AKLTSLEQRLIKLEN 219 (399)
Q Consensus 205 ~~ia~LE~RL~~LE~ 219 (399)
.|-.+++.+..+|+.
T Consensus 1910 ~K~~el~~~~~rl~~ 1924 (3245)
T 3vkg_A 1910 EKRDQLEEEQLHLNI 1924 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566777777765
No 87
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=20.04 E-value=2.2e+02 Score=22.93 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHhhhhcCCCCCc
Q psy9591 304 ERDQRVNELYELSRSVDSALVP 325 (399)
Q Consensus 304 ~~~~KI~eLY~~l~~~~~~~LP 325 (399)
..+..+.+|=+++.+++..-||
T Consensus 31 sFEeal~eLEeIV~~LE~gel~ 52 (100)
T 1vp7_A 31 DFETALAELESLVSAMENGTLP 52 (100)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSC
T ss_pred CHHHHHHHHHHHHHHHHcCCCC
Confidence 3455555555555555553343
Done!