Query psy9591
Match_columns 399
No_of_seqs 129 out of 174
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 23:36:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9591.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9591hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 72.0 15 0.0011 27.7 9.8 63 335-397 11-91 (107)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 58.0 24 0.0017 26.4 8.4 63 336-398 5-85 (107)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 42.4 65 0.0047 24.4 9.7 34 334-367 10-43 (133)
4 d1vp7a_ a.7.13.1 (A:) Exonucle 39.5 8.2 0.0006 27.3 2.5 57 209-289 7-65 (68)
5 d1vp7a_ a.7.13.1 (A:) Exonucle 31.1 45 0.0033 23.2 5.4 54 343-397 7-60 (68)
6 d2gtsa1 a.25.5.1 (A:4-80) Hypo 21.9 77 0.0056 21.9 5.1 55 337-394 22-76 (77)
7 d1gqea_ e.38.1.1 (A:) Polypept 21.8 2.6E+02 0.019 24.9 11.3 80 254-347 3-83 (362)
8 d1quua1 a.7.1.1 (A:1-124) alph 21.4 1.1E+02 0.0078 22.2 6.6 12 382-393 91-102 (124)
9 d1s35a2 a.7.1.1 (A:1169-1273) 18.7 1.4E+02 0.011 20.7 7.3 18 380-397 74-91 (105)
10 d1seta1 a.2.7.1 (A:1-110) Sery 17.8 1.1E+02 0.0081 22.3 5.8 64 255-325 47-110 (110)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=71.98 E-value=15 Score=27.69 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy9591 335 ESLHAQAGNFATLLKELESVQVDLASNLTNNQSL------------------LTSLEGKMGSDVERIKQDVKALDEKIKA 396 (399)
Q Consensus 335 ~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~------------------L~~ve~~~~~N~~~v~~nv~~Le~Ri~~ 396 (399)
..++.+.......+..|+....+....++..+.+ ...+-..+.++++.++..++.|+..+..
T Consensus 11 q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~ 90 (107)
T d1fxka_ 11 QQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEER 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444444443322 2223334667777777777766666655
Q ss_pred h
Q psy9591 397 L 397 (399)
Q Consensus 397 L 397 (399)
|
T Consensus 91 l 91 (107)
T d1fxka_ 91 V 91 (107)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=58.00 E-value=24 Score=26.42 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 336 SLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEG------------------KMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 336 ~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~------------------~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
.+=.....+-+.+..+......+..++..++..|+.++. ...+=+..+..++..|+.+|..|
T Consensus 5 e~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l 84 (107)
T d1fxka_ 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTI 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555666666667777777777777777664 25666666777777777777766
Q ss_pred c
Q psy9591 398 K 398 (399)
Q Consensus 398 ~ 398 (399)
.
T Consensus 85 ~ 85 (107)
T d1fxka_ 85 E 85 (107)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=42.36 E-value=65 Score=24.36 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9591 334 LESLHAQAGNFATLLKELESVQVDLASNLTNNQS 367 (399)
Q Consensus 334 L~~LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~ 367 (399)
+..++.+.....+.+..|+....++...++..+.
T Consensus 10 ~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~ 43 (133)
T d1fxkc_ 10 LNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666655555444443
No 4
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=39.51 E-value=8.2 Score=27.34 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCCCchhhHHHhhhhhccCCcccccccCCCCCChHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHH
Q psy9591 209 SLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLRAQINLID--AAHCDAYDARITHLSN 286 (399)
Q Consensus 209 ~LE~RL~~LE~~lG~~~~~~~l~~l~~~~~~~~ss~~~~~~~~~~~L~~~l~~L~~qlslL~--~~~Ld~i~~Rl~~L~~ 286 (399)
+||..+.+||..|.. |- .+.-||-.++..-+.=+.|+. ...|+.++.||+.|..
T Consensus 7 sfEe~l~~LE~IV~~------LE------------------~g~l~Leesl~~ye~G~~L~~~C~~~L~~ae~ki~~l~~ 62 (68)
T d1vp7a_ 7 DFETALAELESLVSA------ME------------------NGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEG 62 (68)
T ss_dssp SHHHHHHHHHHHHHH------HH------------------TTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH------Hh------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 577888888887732 21 244689999999999899887 5689999999999987
Q ss_pred HHH
Q psy9591 287 KLD 289 (399)
Q Consensus 287 ele 289 (399)
+..
T Consensus 63 ~~~ 65 (68)
T d1vp7a_ 63 DLL 65 (68)
T ss_dssp HHH
T ss_pred ccc
Confidence 653
No 5
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=31.09 E-value=45 Score=23.20 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy9591 343 NFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKAL 397 (399)
Q Consensus 343 ~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri~~L 397 (399)
+|-+.+.+|+.....|.+.=-..++.|..+|..++ =+..-+..+.+.|.||+.|
T Consensus 7 sfEe~l~~LE~IV~~LE~g~l~Leesl~~ye~G~~-L~~~C~~~L~~ae~ki~~l 60 (68)
T d1vp7a_ 7 DFETALAELESLVSAMENGTLPLEQSLSAYRRGVE-LARVCQDRLAQAEQQVKVL 60 (68)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 46666777777777666555555555555555432 2333445555555555544
No 6
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=21.94 E-value=77 Score=21.85 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9591 337 LHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKI 394 (399)
Q Consensus 337 LH~~Aa~f~~~L~~Le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~v~~nv~~Le~Ri 394 (399)
|..+....+....+|++=|..-. ....+.|.++..+|.+=-+.++..|.=|-+||
T Consensus 22 lndevngls~hf~nl~swqd~~r---d~fsevldnlk~tfnefdea~qeqiawlkeri 76 (77)
T d2gtsa1 22 LREEVNSLSNHFHNLESWRDARR---DKFSEVLDNLKSTFNEFDEAAQEQIAWLKERI 76 (77)
T ss_dssp HHHHHHHHHHHHTTCSSCCSHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhhcchHhhhhhhH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566666666666665443322 23345566666666665566666666666665
No 7
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=21.83 E-value=2.6e+02 Score=24.92 Aligned_cols=80 Identities=13% Similarity=0.187 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCchHHHHHH
Q psy9591 254 SLVENTDWLRAQINLIDA-AHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLI 332 (399)
Q Consensus 254 ~L~~~l~~L~~qlslL~~-~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP~ll~RLr 332 (399)
+|...|+.|..++..|-. -.+|.++.|+..|..++.. -.. +.|+...+||..=|..|. .+|+...
T Consensus 3 ~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsd----P~f--W~D~~kAqkl~KE~s~L~--------~iVe~~~ 68 (362)
T d1gqea_ 3 PVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQ----PDV--WNEPERAQALGKERSSLE--------AVVDTLD 68 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHS----GGG--GGSHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcC----Chh--hhCHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 577888889999888853 3688888888777655431 111 245555555554444443 3455566
Q ss_pred HHHHHHHHHHHHHHH
Q psy9591 333 ALESLHAQAGNFATL 347 (399)
Q Consensus 333 sL~~LH~~Aa~f~~~ 347 (399)
.|+....++..+.+.
T Consensus 69 ~l~~~leDl~eL~El 83 (362)
T d1gqea_ 69 QMKQGLEDVSGLLEL 83 (362)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555554443
No 8
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.38 E-value=1.1e+02 Score=22.16 Aligned_cols=12 Identities=0% Similarity=0.271 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy9591 382 RIKQDVKALDEK 393 (399)
Q Consensus 382 ~v~~nv~~Le~R 393 (399)
.|..++..|..|
T Consensus 91 ~i~~~~~~l~~r 102 (124)
T d1quua1 91 NVNDRCQKICDQ 102 (124)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 9
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.72 E-value=1.4e+02 Score=20.68 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9591 380 VERIKQDVKALDEKIKAL 397 (399)
Q Consensus 380 ~~~v~~nv~~Le~Ri~~L 397 (399)
...|..++..|.+|-..|
T Consensus 74 ~~~I~~~~~~l~~rw~~l 91 (105)
T d1s35a2 74 SDKIKEKVQLIEDRHRKN 91 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 344555555555554444
No 10
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=17.83 E-value=1.1e+02 Score=22.33 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhhhhcCCCCCc
Q psy9591 255 LVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVP 325 (399)
Q Consensus 255 L~~~l~~L~~qlslL~~~~Ld~i~~Rl~~L~~ele~l~~kk~~~~~~~~~~~~KI~eLY~~l~~~~~~~LP 325 (399)
|..--+.++.++.-......+.+..+++.|..++..+...-. ..+.+++++.-.+|.+-.+.+|
T Consensus 47 l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~-------~~~~~l~~~ll~iPNi~~~~VP 110 (110)
T d1seta1 47 VQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALR-------EKEARLEALLLQVPLPPWPGAP 110 (110)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTCCCCCCTTSC
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcCCCCCCccCc
Confidence 344445566666655444567778888888888888874333 3444555555555555445555
Done!