RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9591
(399 letters)
>gnl|CDD|218324 pfam04912, Dynamitin, Dynamitin. Dynamitin is a subunit of the
microtubule-dependent motor complex and in implicated in
cell adhesion by binding to macrophage-enriched
myristoylated alanine-rice C kinase substrate
(MacMARCKS).
Length = 376
Score = 191 bits (486), Expect = 4e-57
Identities = 112/379 (29%), Positives = 200/379 (52%), Gaps = 38/379 (10%)
Query: 26 TSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGE--K 83
T+E+IE++ + +A KFK + ++ + DFSDS+ K + GY + ++E++ +G K
Sbjct: 30 TNESIERISVSPSEAHKKFKGRKLNTSNVDFSDSIGKKKRKGYLMKQGEYEILGEGFSEK 89
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAK--LSVQQIEELVSQVSAIKLDKI 141
ETP+QK+QRLQ E+ EL++E+ I+ + S +K +E L Q+ +KL+++
Sbjct: 90 ETPVQKFQRLQTEMNELLEEIQAIQSDVKESKEEKISTVALAGVVETLEKQLETLKLEQL 149
Query: 142 LGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQL 201
LG D + SD +G K L+ +L+ F S +K+ S +Q +L
Sbjct: 150 LGSDTVIDSSDTQGNLSKKLLTQLEEFKKSTNKSASPDK----------------EQTKL 193
Query: 202 NTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDW 261
+ A+KL LE+RL KLE +G + + L + S+ L+E
Sbjct: 194 SQASKLAELEKRLHKLEAAIGNDPDKL------SRLTADTESLP---------LLEAVSR 238
Query: 262 LRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDS 321
+ A+ L+D H D + R+ + K++ I EK + D+ + +++ELYE+ + D
Sbjct: 239 ISAKAALLDPDHLDHIEQRLQSVLGKMESIDEKKAASL-ADANTESKISELYEIMKKWDP 297
Query: 322 AL--VPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSD 379
+ +P +ERL L+SLH QA +F+ L LE+ Q + S+L +N++LL ++ +
Sbjct: 298 VVEQLPDVVERLKTLKSLHEQASHFSQSLAHLETTQQTIESSLASNKNLLEEVQESFKQN 357
Query: 380 VERIKQDVKALDEKIKALK 398
+E IK +V L+ ++ L+
Sbjct: 358 LETIKDNVTKLEARVAKLQ 376
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 35.4 bits (83), Expect = 0.057
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 87 LQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDL 146
++ + L ELKEL E+ Q+ KAKL+ +L++Q + K+ L
Sbjct: 718 PERVEALLEELKELEKELEQL----------KAKLAAAAAGDLLAQAKEVNGVKV----L 763
Query: 147 LESLSDVEGAALKTLVMRL 165
+ V+ AL+TL L
Sbjct: 764 AAQVEGVDAKALRTLADDL 782
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 34.1 bits (79), Expect = 0.12
Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 80 QGEKETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKA-------KLSVQQIEELVSQ 132
E E LQ+ ++L+ ELK+L + + + +K K+ +I +++ +
Sbjct: 368 DTELEVLLQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKE 427
Query: 133 VSAIKLDKILG--PDLLESLSDVEGAALKTLVMRLDSFALSNSK 174
+ L+ + ++LESL + +L+ L++ + A S
Sbjct: 428 ATRQDLELLKNVWGEILESLK-AQRKSLRALLVNSEPVAASEDT 470
>gnl|CDD|153288 cd07604, BAR_ASAPs, The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP
with SH3 domain, ANK repeat and PH domain containing
proteins. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. This subfamily is
composed of ASAPs (ArfGAP with SH3 domain, ANK repeat
and PH domain containing proteins), which are Arf GTPase
activating proteins (GAPs) with similarity to ACAPs
(ArfGAP with Coiled-coil, ANK repeat and PH domain
containing proteins) in that they contain an N-terminal
BAR domain, followed by a Pleckstrin homology (PH)
domain, an Arf GAP domain, and ankyrin (ANK) repeats.
However, ASAPs contain an additional C-terminal SH3
domain. ASAPs function in regulating cell growth,
migration, and invasion. Vertebrates contain at least
three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2
shows GTPase activating protein (GAP) activity towards
Arf1 and Arf5. They do not show GAP activity towards
Arf6, but is able to mediate Arf6 signaling by binding
stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. BAR
domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. The BAR domain of ASAP1
mediates membrane bending, is essential for function,
and autoinhibits GAP activity by interacting with the PH
and/or Arf GAP domains.
Length = 215
Score = 32.8 bits (75), Expect = 0.20
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 343 NFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKALKK 399
F+ KEL ++ +L NL N ++ L+ + D++ K D+K +K +
Sbjct: 67 KFSVFTKELAALFKNLMQNLNNI--IMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYE 121
>gnl|CDD|217077 pfam02514, CobN-Mg_chel, CobN/Magnesium Chelatase. This family
contains a domain common to the cobN protein and to
magnesium protoporphyrin chelatase. CobN is implicated
in the conversion of hydrogenobyrinic acid a,c-diamide
to cobyrinic acid. Magnesium protoporphyrin chelatase is
involved in chlorophyll biosynthesis.
Length = 1079
Score = 32.9 bits (76), Expect = 0.37
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 90 YQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDLLES 149
Y L EL+EL+DE + A+ + + ++I EL ++ LD+ LG D E
Sbjct: 499 YGELA-ELEELIDEYRE----ADGLDPARREALREEILELAEELG---LDRDLGEDFEEF 550
Query: 150 LSDVEGAA--LKTLVMR 164
L + LK +
Sbjct: 551 LERLHDYLCELKESQIP 567
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 32.4 bits (74), Expect = 0.50
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 8/127 (6%)
Query: 69 DVLSQDWELVAQGEKETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEE 128
D L + +++ E P +K +R E K L E+ +K + D+ K + I
Sbjct: 708 DKLKELADILKVTPNELP-KKIERFFEEWKALQKELESLKLKIADQKIDELKDKAETING 766
Query: 129 ---LVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDS--FALSNSKTPSSKGGVG 183
LV V A + + + + L G+A+ L + + G+
Sbjct: 767 VKVLVEVVDAKDMKSLK--TMADRLKSKLGSAIYVLASFANGKVKLVCGVSNDVLNKGIK 824
Query: 184 SGELVRY 190
+GEL+
Sbjct: 825 AGELINQ 831
>gnl|CDD|237448 PRK13614, PRK13614, lipoprotein LpqB; Provisional.
Length = 573
Score = 32.1 bits (73), Expect = 0.62
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 108 KEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDS 167
KE E SA D+ ++ Q L +Q + ++ DL++ D G+ L
Sbjct: 254 KELDEASAEDRQRMQQQLQLTLRAQPDVVNVELRANQDLVDV-EDNSGSVL--------- 303
Query: 168 FALSNSKT-PSSKGGVGSGELVRYQLGLQSQQAQLNTAAKLT 208
K+ P+ + GV GELVRY+ G S + + A L
Sbjct: 304 -PPVRDKSVPNRQIGVSDGELVRYENGQISPLPDIQSVAGLG 344
>gnl|CDD|171822 PRK12938, PRK12938, acetyacetyl-CoA reductase; Provisional.
Length = 246
Score = 31.1 bits (70), Expect = 0.86
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 306 DQRVNELYELSRSVDSALVPRTLERLIALESLHAQAG-----NFATLLKELESVQVDLAS 360
D + L+ +++ V +V R R+I + S++ Q G N++T + + LA
Sbjct: 110 DTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQ 169
Query: 361 NL-TNNQSLLTSLEGKMGSD-VERIKQDV 387
+ T ++ T G +G+D V+ I+ DV
Sbjct: 170 EVATKGVTVNTVSPGYIGTDMVKAIRPDV 198
>gnl|CDD|221643 pfam12572, DUF3752, Protein of unknown function (DUF3752). This
domain family is found in eukaryotes, and is typically
between 140 and 163 amino acids in length.
Length = 148
Score = 30.1 bits (68), Expect = 1.2
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILG 143
ETP +K +RLQ DEV ++ A A+ AK S ++ +E+ +V +K G
Sbjct: 37 ETPEEKAKRLQ-------DEVLGVEAGASAPAAASAKAS-KRDKEMARKVKE-YNEKKRG 87
Query: 144 PDLLE 148
L+E
Sbjct: 88 KSLVE 92
>gnl|CDD|131309 TIGR02256, ICE_VC0181, integrative and conjugative element protein,
VC0181 family. This uncharacterized protein is found in
several Proteobacteria, among them Rhizobium sp. NGR234,
Vibrio cholerae, Myxococcus xanthus, and E. coli strain
ECOR31. In the latter, it is part of an integrative and
conjugative element that is readily induced to excise
and circularize.
Length = 131
Score = 29.1 bits (65), Expect = 1.8
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 281 ITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSAL 323
IT +S I V+E +E+S VD+ L
Sbjct: 34 ITKISEPGSGDIRTRKRFSRDGEHHQSEVDEHFEVSGGVDTYL 76
>gnl|CDD|119351 cd02872, GH18_chitolectin_chitotriosidase, This conserved domain
family includes a large number of catalytically inactive
chitinase-like lectins (chitolectins) including YKL-39,
YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic
mammalian chitinase), as well as catalytically active
chitotriosidases. The conserved domain is an
eight-stranded alpha/beta barrel fold belonging to the
family 18 glycosyl hydrolases. The fold has a
pronounced active-site cleft at the C-terminal end of
the beta-barrel. The chitolectins lack a key active
site glutamate (the proton donor required for hydrolytic
activity) but retain highly conserved residues involved
in oligosaccharide binding. Chitotriosidase is a
chitinolytic enzyme expressed in maturing macrophages,
which suggests that it plays a part in antimicrobial
defense. Chitotriosidase hydrolyzes chitotriose, as
well as colloidal chitin to yield chitobiose and is
therefore considered an exochitinase. Chitotriosidase
occurs in two major forms, the large form being
converted to the small form by either RNA or
post-translational processing. Although the small form,
containing the chitinase domain alone, is sufficient for
the chitinolytic activity, the additional C-terminal
chitin-binding domain of the large form plays a role in
processing colloidal chitin. The chitotriosidase gene is
nonessential in humans, as about 35% of the population
are heterozygous and 6% homozygous for an inactivated
form of the gene. HCGP39 is a 39-kDa human cartilage
glycoprotein thought to play a role in connective tissue
remodeling and defense against pathogens.
Length = 362
Score = 30.2 bits (69), Expect = 1.9
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 50 SVNRADF-SDSLNKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCELKELMDE 103
NR F ++ L KYG+D L DWE Q + P + + LKEL +
Sbjct: 94 PENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQ--RGGPPEDKENFVTLLKELREA 146
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 30.3 bits (69), Expect = 2.1
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 87 LQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDL 146
L K +RL ELKEL E+ ++K+ + + + E + +K+ L
Sbjct: 731 LPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAEE-----IGGVKV-------L 778
Query: 147 LESLSDVEGAALKTLVMRL 165
+ + + L+ + L
Sbjct: 779 AKEVDGADMKELREIADDL 797
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 29.9 bits (68), Expect = 2.5
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 24 TRTSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEK 83
T ++ L + L+ + K + L KL K L E Q EK
Sbjct: 321 TEIEVGVDFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPP--EKREQLEK 378
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQ 125
L+ ++L EL+EL +E+ ++KE E+ S+ K+SV +
Sbjct: 379 L--LETKEKLSEELEELEEELKELKEELESLYSE-GKISVNK 417
>gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional.
Length = 895
Score = 30.0 bits (68), Expect = 2.6
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 305 RDQRVNELYELSRSVDSALVP----RTLERLIALESLHAQA--------GNFATLLKELE 352
R+QR LYE+S+++ L P T E +A + A++ G L +
Sbjct: 508 REQRTRHLYEMSKALAVGLSPEDIAATSEHFLA-STFQARSQLLLPDDNGKLQPLTHDQG 566
Query: 353 SVQVDLA 359
D A
Sbjct: 567 MTPWDDA 573
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 29.6 bits (67), Expect = 2.7
Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 11/123 (8%)
Query: 277 YDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIALES 336
Y+ R+ L + + E + + ++ +N + +++ P+ ++L AL+
Sbjct: 138 YEWRMQLLEGLKEGLEENLEGMKRDEELLNKDLNLI--------NSIKPKLRKKLQALKE 189
Query: 337 LHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEKIKA 396
A A EL L+ + +E ++Q+++ L I+A
Sbjct: 190 EIASLRQLA---DELNLCDPLELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEA 246
Query: 397 LKK 399
L
Sbjct: 247 LTN 249
>gnl|CDD|218640 pfam05565, Sipho_Gp157, Siphovirus Gp157. This family contains
both viral and bacterial proteins which are related to
the Gp157 protein of the Streptococcus thermophilus SFi
bacteriophages. It is thought that bacteria possessing
the gene coding for this protein have an increased
resistance to the bacteriophage.
Length = 162
Score = 28.8 bits (65), Expect = 3.5
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 336 SLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGK----------MGSDVERIKQ 385
L+ G + LL+ LE +D + +S+ E K + +D+E IK
Sbjct: 2 KLYELTGQYKELLELLEDGDLDPEALADTLESIEEEFEDKVENIAKVIKNLEADIEAIKA 61
Query: 386 DVKALDEKIKALKK 399
++K L E+ K+++
Sbjct: 62 EIKRLAERKKSIEN 75
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 29.7 bits (67), Expect = 3.6
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 84 ETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQ-IEELVSQVSAIKLDKIL 142
ET L ++ + ELKEL + +I E A + A +Q +EE+ ++ I+ ++
Sbjct: 343 ETELGSVRKFEKELKELESVLDEILE--NIEAQEVAYSELQDNLEEIEKALTDIEDEQEK 400
Query: 143 GPDLLESLSDVEGAALKTL 161
+ L SL E A + L
Sbjct: 401 VQEHLTSLRKDELEARENL 419
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 29.2 bits (66), Expect = 3.6
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 97 LKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILG-PDLLESLSDVEG 155
+ EL D + ++ S K Q +E + + V LD++ P + + +D+E
Sbjct: 242 IDELWDAIEDHRKFLTESGLFTEKRRTQYVEWIRTLVRDEVLDRLEANPAVKKVYADLEA 301
Query: 156 AALK 159
A K
Sbjct: 302 AVRK 305
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 28.5 bits (64), Expect = 5.0
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 311 ELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLT 370
L LSR A + +RL LE L + G F+T +K+ +V +A L ++ S+L
Sbjct: 101 RLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQ----KVAIARALVHDPSILV 156
Query: 371 SLEGKMGSDV 380
E G D+
Sbjct: 157 LDEPTSGLDI 166
>gnl|CDD|239870 cd04405, RhoGAP_BRCC3-like, RhoGAP_BRCC3-like: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of BRCC3-like proteins. This subgroup
also contains two groups of closely related proteins,
BRCC3 and DEPDC7, which both contain a C-terminal
RhoGAP-like domain and an N-terminal DEP (Disheveled,
Egl-10, and Pleckstrin) domain. The function(s) of
BRCC3 and DEPDC7 are unknown. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 235
Score = 28.5 bits (64), Expect = 5.8
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 121 LSVQQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFALSNS 173
LS + +EE+ + + I+L +++G LLE L D K + +D +++
Sbjct: 1 LSPEVVEEIWKEQTLIRLLQLVGLPLLEELLDPALVNPKHISYNMDPDVYTSN 53
>gnl|CDD|153082 cd00644, HMG-CoA_reductase_classII, Class II
hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase
(HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA)
reductase (HMGR), class II, prokaryotic enzyme is a
homodimer. Class II enzymes are found primarily in
prokaryotes and Archaeoglobus fulgidus and are soluble
as they lack the membrane region. Enzymes catalyze the
synthesis of coenzyme A and mevalonate in isoprenoid
synthesis. Bacteria, such as Pseudomonas mevalonii,
which rely solely on mevalonate for their carbon source,
catalyze the reverse reaction, using an NAD-dependent
HMGR to deacetylate mevalonate into
3-hydroxy-3-methylglutaryl-CoA. Human and bacterial HMGR
differ in their active site architecture.
Length = 417
Score = 28.6 bits (65), Expect = 6.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 261 WLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDP 300
+ QI L+D + D AR L++K D+I+E AN P
Sbjct: 104 LMIGQIQLVDVS--DPAKARAFILAHK-DEILEIANEAHP 140
>gnl|CDD|180119 PRK05500, PRK05500, bifunctional orotidine 5'-phosphate
decarboxylase/orotate phosphoribosyltransferase protein;
Validated.
Length = 477
Score = 28.5 bits (64), Expect = 7.7
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 329 ERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVK 388
ERLI L S+ A+ GN +L A +N LL + + +K+ VK
Sbjct: 203 ERLILLRSIWAEKGNLNQILT---------AGLNSNGDGLLIPVPQDLLGAAN-LKEQVK 252
Query: 389 ALDEKIKALK 398
+L E+I ++
Sbjct: 253 SLREEINQIR 262
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.4 bits (64), Expect = 8.7
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 82 EKETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEEL 129
E+ TP + + ++ EL+E+ E + E + A + + E L
Sbjct: 209 EEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYL 256
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 28.2 bits (63), Expect = 9.6
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 83 KETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDK 140
KE K + L+ E++EL + K E A + K +++E ++ ++ K+ K
Sbjct: 539 KEQEKLK-KELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHK 595
>gnl|CDD|220735 pfam10408, Ufd2P_core, Ubiquitin elongating factor core. This is
the most conserved part of the core region of Ufd2P
ubiquitin elongating factor or E4, running from helix
alpha-11 to alpha-38. It consists of 31 helices of
variable length connected by loops of variable size
forming a compact unit; the helical packing pattern of
the compact unit consists of five structural repeats
that resemble tandem Armadillo (ARM) repeats. This
domain is involved in ubiquitination as it binds Cdc48p
and escorts ubiquitinated proteins from Cdc48p to the
proteasome for degradation. The core is structurally
similar to the nuclear transporter protein
importin-alpha. The core is associated with the U-box at
the C-terminus, pfam04564, which has ligase activity.
Length = 625
Score = 28.0 bits (63), Expect = 9.7
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 87 LQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIK 137
++KY+RL ELK L DE+ +++ S + K +Q+E L ++ +++
Sbjct: 187 IEKYKRLLRELKRLQDELEELE--QSRSNWAQLKRLEKQLEILSAEKLSLE 235
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.128 0.339
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,001,911
Number of extensions: 1793717
Number of successful extensions: 1929
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1885
Number of HSP's successfully gapped: 121
Length of query: 399
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 300
Effective length of database: 6,546,556
Effective search space: 1963966800
Effective search space used: 1963966800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.9 bits)