RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9591
(399 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 2e-08
Identities = 69/433 (15%), Positives = 135/433 (31%), Gaps = 131/433 (30%)
Query: 10 MICQKPTRAPRSMMTRTSENIEQLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYG-- 67
+ K + + E + +++ + +K + + S+ + + ++L+
Sbjct: 70 TLLSKQEEMVQKFV----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 68 ---YDVLSQDWELVAQGEKETPLQKYQRLQCELKELMDEVSQIKEPAENSA------SDK 118
Y+V + LQ Y +L+ L EL PA+N S K
Sbjct: 126 FAKYNV--------------SRLQPYLKLRQALLEL--------RPAKNVLIDGVLGSGK 163
Query: 119 AKLSVQ------QIEELVSQVSAIKLDKILGPD-LLESLSDVEGAALKTLVMRLDSFALS 171
+++ ++ ++ + L P+ +LE L+ L+ ++D S
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--------MLQKLLYQIDPNWTS 215
Query: 172 NSKTPSSKGGVGSGELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLEN------------ 219
S S +L + S QA+L K E L+ L N
Sbjct: 216 RSDHSS-----------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 220 ----------------LLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLVENTDWLR 263
L ++ + L L L L L
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLL---KYLDCRPQDLP 319
Query: 264 AQ--------INLIDAAHCDAYDARITHL----SNKLDKIIEKA-NSVDPKDSERDQRVN 310
+ +++I A A + +KL IIE + N ++P + R
Sbjct: 320 REVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA----EYR-- 372
Query: 311 ELYE-LSRSVDSALVP-RTLERL----------IALESLHAQ---AGNFATLLKELESVQ 355
++++ LS SA +P L + + + LH + S+
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 356 VDLASNLTNNQSL 368
++L L N +L
Sbjct: 433 LELKVKLENEYAL 445
Score = 47.2 bits (111), Expect = 8e-06
Identities = 50/333 (15%), Positives = 104/333 (31%), Gaps = 78/333 (23%)
Query: 101 MD-EVSQIKEPAENSASD-----KAKLSVQQIEELVSQV-SAIKLDKILG-PD------- 145
MD E + + ++ S + ++++ + S ++D I+ D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 146 LLESLSDVEGAALKTLV---MRLD-SFALSNSKTPSSKGGVGSGELVRYQLGLQSQQAQL 201
L +L + ++ V +R++ F +S KT + S Y Q+ +L
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYI----EQRDRL 119
Query: 202 -NTAAKLTSL----EQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLV 256
N Q +KL L E + ++ + + G G +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL------------IDGVLGSGKTWVA 167
Query: 257 ENTDWLRA---------QINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQ 307
+ + +I ++ +C++ + + L L +I S S
Sbjct: 168 LDV--CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 308 RVNELY-ELSRSVDSALVPRTLERLIAL----ESLHAQAGNFA--TLLKELESVQVDLAS 360
R++ + EL R + S L L+ L + A N + LL
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL--LV-LLNVQNAKAWNAFNLSCKILL------------ 270
Query: 361 NLTNNQSLLTSLEGKMGSDVERIKQDVKALDEK 393
T + + L + + + L
Sbjct: 271 -TTRFKQVTDFLSAATTTHI-SLDHHSMTLTPD 301
Score = 46.8 bits (110), Expect = 1e-05
Identities = 62/440 (14%), Positives = 130/440 (29%), Gaps = 119/440 (27%)
Query: 1 MINQMF-MRLMICQKPTRAPRSMMTRTSENIEQL--HLDAKQATLKFKDKTISVNRADFS 57
M ++F + L C P +++ E +++L +D + I +
Sbjct: 180 MDFKIFWLNLKNCNSP----ETVL----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 58 DSLNKL-----HKYGYDVL-----SQDWE--------------------LVAQGEKETPL 87
L +L ++ VL ++ W L A L
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 88 QKYQR--LQCELKELMDEVSQIKE---PAENSASDKAKLSVQQIEELVS----------Q 132
+ E+K L+ + + P E + I E +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 133 VSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFAL--SNSKTPSSKGGVGSGELVRY 190
V+ KL I+ L L E + + D ++ ++ P+ + L
Sbjct: 350 VNCDKLTTIIESSL-NVLEPAE---YRKM---FDRLSVFPPSAHIPTI---L----LSLI 395
Query: 191 QLGLQSQQAQ--LNTAAKLTSLEQRLIKLENLLGEHSSSVRL-IKLENLLGEHSS----- 242
+ +N K + +E++ E+ + S + L +KLEN H S
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 243 -----------SVCKLFG------GGHNSLVENTD-------------WLRAQINLIDAA 272
L G H +E+ + +L +I A
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 273 HCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLI 332
+ + N L ++ + D + ++ VN + + ++ L+ L+
Sbjct: 514 WNASGS-----ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 333 ALESLHAQAGNFATLLKELE 352
+ + F K+++
Sbjct: 569 RIALMAEDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 4e-07
Identities = 72/496 (14%), Positives = 144/496 (29%), Gaps = 193/496 (38%)
Query: 32 QLHLDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDVLSQDWELVAQGEKETPLQKYQ 91
A Q L + F+ L + + + D E E
Sbjct: 25 ASFFIASQ--L----------QEQFNKILPE----PTEGFAADDEPTTPAE--------- 59
Query: 92 RLQCELKELMDEVSQIKEPAENSASDKA-KLSVQQIEE----------LVSQVSAIKLDK 140
L + + + VS + EP++ D+ L + + E L +++
Sbjct: 60 -L---VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 141 ILG-PDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSSK-----GGVGSG-----ELV- 188
++ +L+++ A + + +S +++ GG G+ EL
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 189 ---RYQ--LG--LQSQQAQLNTAAKLTSLEQRL----IKLENLLGEHSS----------- 226
Y +G ++ L+ + T +++ + + L S+
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 227 -SVRLIKLENLLGEHSSSVCKLFG-----------G--GH----------------NSLV 256
S LI + L H KL G G GH S
Sbjct: 236 ISCPLIGVIQLA--HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 257 ENTD-------W--LRAQ-----INLIDAAHCDAYDA---------RITHLS-NKLDKII 292
+ + +R +L + D+ + I++L+ ++ +
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 293 EKANSVDPKDSERDQRVNELYELSRSVDSA--LV----PRTLERL-IALESLHAQAGNFA 345
K NS P ++V E+S V+ A LV P++L L + L A +G
Sbjct: 354 NKTNSHLP----AGKQV----EISL-VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG--- 401
Query: 346 TLLKELESVQVDLASNLTNNQS--------------LL-------TSLEGKMGSDVERIK 384
+QS L + L + + I
Sbjct: 402 ------------------LDQSRIPFSERKLKFSNRFLPVASPFHSHL---LVPASDLIN 440
Query: 385 QDVKALDEKIKA--LK 398
+D+ + A ++
Sbjct: 441 KDLVKNNVSFNAKDIQ 456
Score = 36.2 bits (83), Expect = 0.021
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 31/131 (23%)
Query: 42 LKFKDKTISV--NRADFSDSLNKLHKYG---YDVLSQDWELVAQGEKETPLQKYQRLQCE 96
+ + + V R + G Y +++ + VA + LQ E
Sbjct: 1777 MSIES-LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV----VE 1831
Query: 97 LKELMDEVSQIKEPA-ENSASDKAKLSVQQI---------EELVSQVSAIKLDKILGPDL 146
+ + E N + QQ + + + ++ IKL KI +L
Sbjct: 1832 --RVGKRTGWLVEIVNYNVEN-------QQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Query: 147 LESLS--DVEG 155
+SLS +VEG
Sbjct: 1883 QKSLSLEEVEG 1893
Score = 33.1 bits (75), Expect = 0.22
Identities = 36/254 (14%), Positives = 69/254 (27%), Gaps = 112/254 (44%)
Query: 201 LNTAAKLTSLEQRLIKL--ENLLGEHSSSVRLIKLENLLGEHSSSVCKLFGGGHNSLV-- 256
K + + + E ++ + ++ K + EHS+S F L
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE---INEHSTSYT--FRSEKGLLSAT 1729
Query: 257 ENTDWLRAQ--INLIDAAHCDAYDARITHLSNKLDKIIE--KANSVDPKDS--------E 304
+ T Q + L++ A E K+ + P D+ E
Sbjct: 1730 QFT-----QPALTLMEKA------------------AFEDLKSKGLIPADATFAGHSLGE 1766
Query: 305 RDQRVNELYELSRSVDSALVPRTLERLIALESLHAQAG--NFATLLK------ELESVQV 356
Y +AL + A + +L++ V V
Sbjct: 1767 --------Y-------AALA--------------SLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 357 DLASNLTNNQSLLTSLEGKMGSD---------VERI-----------------KQ----- 385
+N ++ G++ + VER+ +Q
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 386 DVKALDEKIKALKK 399
D++ALD L
Sbjct: 1858 DLRALDTVTNVLNF 1871
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.057
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 18/47 (38%)
Query: 82 EKETPLQKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQ-QIE 127
EK Q ++LQ LK D+ + PA L+++ +E
Sbjct: 18 EK----QALKKLQASLKLYADDSA----PA---------LAIKATME 47
Score = 28.0 bits (61), Expect = 3.4
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 384 KQDVKALDEKIK 395
KQ +K L +K
Sbjct: 19 KQALKKLQASLK 30
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 31.6 bits (72), Expect = 0.50
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 52 NRADFSDSLNK-LHKYGYDVLSQDWE-LVAQGEKETPLQKYQRLQCELKELMDEVSQ 106
NR F S+ K L +Y +D L DWE ++G + L E++E ++ ++
Sbjct: 94 NRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQEAK 150
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 31.4 bits (71), Expect = 0.52
Identities = 17/126 (13%), Positives = 49/126 (38%), Gaps = 4/126 (3%)
Query: 274 CDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRSVDSALVPRTLERLIA 333
C LS K+ + S++ + + + +E+ +L +++ P +
Sbjct: 19 CPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNM 78
Query: 334 LESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDEK 393
+++ ++ + + E+ + S++ Q + S K+ +K+ V L+ +
Sbjct: 79 IDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKI----VNLKEKVAQLEAQ 134
Query: 394 IKALKK 399
+ K
Sbjct: 135 CQEPCK 140
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 30.8 bits (70), Expect = 0.76
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 3/84 (3%)
Query: 319 VDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKM-- 376
+ S ++ I S + +K+ + N SL K
Sbjct: 111 IRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAI 170
Query: 377 -GSDVERIKQDVKALDEKIKALKK 399
+ + + V+ L +++ L+
Sbjct: 171 AQLNYADMLKRVEPLRNELQKLED 194
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 30.7 bits (70), Expect = 0.83
Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 53 RADFSDSLNKLHKYGYDVLSQDWELVAQGEKE--TPLQKYQRLQCELKELMDEVSQIKEP 110
A D+ L ++ S+D + +E ++ + L+ E + + + V +
Sbjct: 47 CAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVN 106
Query: 111 AENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRL 165
+NS + Q + L ++ I+ ++ L + +E +RL
Sbjct: 107 QDNSQVQQD----PQYQSLRARGREIR-KQL--TLLYPKEAQLE-EQFYLRALRL 153
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 29.5 bits (67), Expect = 1.0
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 88 QKYQRLQCELKELMDEVSQIKEPAENSASDKAKLSVQQIEELVSQVSAIKLDKILGPDLL 147
+ +R E K+ E+ ++ K+ ++ + L+ + ++
Sbjct: 32 KTVERFFEEWKDQRKEIERL----------KSVIADLWADILMERAEEFD-----SMKVV 76
Query: 148 ESLSDVEGAALKTLVMRL 165
+ D + AL+ L RL
Sbjct: 77 AEVVDADMQALQKLAERL 94
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric
regulation, ACT domain, transferase, amino acid
biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP:
c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Length = 449
Score = 30.3 bits (69), Expect = 1.2
Identities = 16/103 (15%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 259 TDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSERDQRVNELYELSRS 318
T+ L + L + ++ + N I+E+ + E ++ + + L+ +
Sbjct: 45 TNLL---VALAEGLEPGERFEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEA 101
Query: 319 VDSALVPRTLERLIAL-ESLHAQAGNFATLLKE--LESVQVDL 358
A P + L++ E + F +L+E +++ D+
Sbjct: 102 AALATSPALTDELVSHGELMSTLL--FVEILRERDVQAQWFDV 142
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 29.8 bits (67), Expect = 1.3
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 52 NRADFSDSLNK-LHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCELKELMDEVSQIKEP 110
++ SL + + +Y D + D+E +K T + L + + I
Sbjct: 102 WVSNAVTSLTRIIQRYNLDGIDIDYEHFQNTDKNT----FAECIGRLITTLKKNGVISFA 157
Query: 111 AENSASDKAKLSVQQIEELV 130
+ + + + E
Sbjct: 158 SISPFPSVDEYYLALFNEYK 177
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor
specificity, envelope Pro fusion protein, membrane,
transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL
NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB:
2rfu_B* 3bt6_B*
Length = 176
Score = 29.2 bits (65), Expect = 1.4
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 4/95 (4%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKAN----SVDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + I ++ L+ + E + E + EL E + + +
Sbjct: 35 AADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRADTISS 94
Query: 327 TLERLIALESLHAQAGNFATLLKELESVQVDLASN 361
+E + L + LL ++ L +
Sbjct: 95 QIELAVLLSNEGIINSEDEHLLALERKLKKMLGPS 129
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 30.3 bits (67), Expect = 1.4
Identities = 27/214 (12%), Positives = 72/214 (33%), Gaps = 22/214 (10%)
Query: 186 ELVRYQLGLQSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSSVRLIKLENLLGEHSSSVC 245
+ + + + + L +L + + +++ H
Sbjct: 470 TDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADG--QVKECYQSHR---- 523
Query: 246 KLFGGGHNSLVENTDWLRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDPKDSER 305
+ L ++AA A A+ S ++ + +++D ER
Sbjct: 524 -----------DTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKER 572
Query: 306 DQRVNELYELSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVDLASNLTNN 365
+ N+L +SV+ + + L L ++ +A + L + + + +L
Sbjct: 573 EGLENDL----KSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQ 628
Query: 366 QSLLTSLEGKMGSDVERIKQDVKALDEKIKALKK 399
+ LL +++ + ++KQ + + + LK
Sbjct: 629 EGLLKNIQ-VSHQEFSKMKQSNNEANLREEVLKN 661
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG
BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1
PDB: 1mql_B* 1mqn_B* 2l4g_A
Length = 221
Score = 28.8 bits (64), Expect = 2.3
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKAN----SVDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + A I ++ KL+++IEK N ++ + SE + R+ +L + L
Sbjct: 35 AADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSY 94
Query: 327 TLERLIALESLHAQAGNFATLLKELESVQVDLASN 361
E L+ALE+ H + + K E + L N
Sbjct: 95 NAELLVALENQHTIDLADSEMNKLFEKTRRQLREN 129
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 29.3 bits (66), Expect = 2.4
Identities = 7/53 (13%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 52 NRADFSDSL-NKLHKYGYDVLSQDWELVAQGEKETPLQKYQRLQCELKELMDE 103
R + +++ + + GY ++ D+E V+ +++ + +L++ +
Sbjct: 95 ARTNLVNNIYDLVSTRGYGGVTIDFEQVSAADRD----LFTGFLRQLRDRLQA 143
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein,
glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A
{Influenza a virus} PDB: 2wrh_I*
Length = 222
Score = 28.8 bits (64), Expect = 2.6
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKAN----SVDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + I ++NK++ +IEK N +V + + ++R+ L + +
Sbjct: 35 AADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTY 94
Query: 327 TLERLIALESLHAQAGNFATLLKELESVQVDLASN 361
E L+ LE+ + + + E V+ L +N
Sbjct: 95 NAELLVLLENERTLDFHDSNVRNLYEKVKSQLKNN 129
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion
protein, protein, viral protein; HET: NAG; 1.60A
{Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B*
3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B*
2fk0_B* 3fku_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B*
3r2x_B* 3sm5_B* ...
Length = 174
Score = 28.5 bits (63), Expect = 2.8
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKAN----SVDPKDSERDQRVNELYELSRSVDSALVPR 326
AA ++ ++NK++ +IEK N +V + S ++R+ L + +
Sbjct: 35 AADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTY 94
Query: 327 TLERLIALESLHAQAGNFATLLKELESVQVDLASN 361
E L+ +E+ + + + + V++ L N
Sbjct: 95 NAELLVLMENERTLDFHDSNVKNLYDKVRMQLRDN 129
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 28.4 bits (64), Expect = 4.0
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 52 NRADFSDS-LNKLHKYGYDVLSQDWELVAQ-GEKETPLQKYQRLQCELKELMDEVSQIKE 109
RA F+ + + + +G+D + DWE A + L +++ +D S
Sbjct: 129 TRATFAKTAVEFMKDWGFDGIDVDWEYPASETDANN----MVLLLQRVRQELDSYSATYA 184
Query: 110 PAEN------SASDKAKLSVQQIEELVSQVSAI 136
+ + + + +V ++ +L S + I
Sbjct: 185 NGYHFQLSIAAPAGPSHYNVLKLAQLGSVLDNI 217
>2viu_B Hemagglutinin; envelope protein, glycoprotein; HET: NAG BMA; 2.50A
{Unidentified influenza virus} SCOP: h.3.1.1 PDB:
1eo8_B* 1hgd_B* 1hgf_B* 1hgg_B* 1hgh_B* 1hgi_B* 1hgj_B*
1ken_B* 1qfu_B* 2hmg_B* 1hge_B* 3hmg_B* 3ztj_B* 4hmg_B*
5hmg_B* 3sdy_B* 3eym_B* 3eyk_B* 3eyj_B* 1ti8_B* ...
Length = 175
Score = 27.7 bits (61), Expect = 4.4
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKAN----SVDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + A I ++ KL+++IEK N ++ + SE + R+ +L + L
Sbjct: 35 AADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSY 94
Query: 327 TLERLIALESLHAQAGNFATLLKELESVQVDLASN 361
E L+ALE+ H + + K E + L N
Sbjct: 95 NAELLVALENQHTIDLTDSEMNKLFEKTRRQLREN 129
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Length = 176
Score = 27.7 bits (61), Expect = 4.5
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKAN----SVDPKDSERDQRVNELYELSRSVDSALVPR 326
AA D+ I +++K++ I++K N +D + SE + R+N + +
Sbjct: 35 AADSDSTQKAIDKITSKVNNIVDKMNKQYGIIDHEFSEIETRLNMINNKIDDQIQDIWTY 94
Query: 327 TLERLIALESLHAQAGNFATLLKELESVQVDLASN 361
E L+ LE+ + A + V+ L SN
Sbjct: 95 NAELLVLLENQKTLDEHDANVNNLYNKVKRALGSN 129
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST
cell membrane, HOST membrane, membrane, transmembrane,
viral protein; HET: NAG; 2.60A {Influenza a virus} PDB:
3m5h_B* 3m5i_B* 3m5j_B*
Length = 182
Score = 27.7 bits (61), Expect = 4.8
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 271 AAHCDAYDARITHLSNKLDKIIEKAN----SVDPKDSERDQRVNELYELSRSVDSALVPR 326
AA + + I ++ KL+++I K N +D + +E +Q++ + +R + +
Sbjct: 35 AADYKSTQSAIDQITGKLNRLIGKTNQQFELIDNEFNEIEQQIGNVINWTRDAMTEIWSY 94
Query: 327 TLERLIALESLHAQAGNFATLLKELESVQVDLASN 361
E L+A+E+ H + + K E V+ L N
Sbjct: 95 NAELLVAMENQHTIDLADSEMSKLYERVKKQLREN 129
>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP,
peptidoglycan recognizing protein, AMPD,
acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A
{Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A
Length = 261
Score = 28.2 bits (63), Expect = 5.0
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 35 LDAKQATLKFKDKTISVNRADFSDSLNKLHKYGYDV 70
L + V+ A L L +YGYDV
Sbjct: 182 AQRVNFYLAGRAPHTPVDTASL---LELLARYGYDV 214
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry,
GAL4, complex activator/DNA, gene regulation/DNA
complex; HET: DNA; 2.50A {Saccharomyces cerevisiae}
SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Length = 81
Score = 26.4 bits (58), Expect = 5.2
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 195 QSQQAQLNTAAKLTSLEQRLIKLENLLGEHSSS 227
+ + +L +L L +R+ LE L + SS
Sbjct: 48 EEAEKELLKDNELKKLRERVKSLEKTLSKVHSS 80
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite,
trypanosome; 3.00A {Trypanosoma brucei} SCOP: c.1.12.2
c.8.1.1 d.142.1.5 PDB: 2x0s_A
Length = 913
Score = 28.2 bits (63), Expect = 6.0
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 329 ERLIALESL-HAQAGNFATLLKELESVQV-----D--LASNLTNNQSLLTSLEGKMGSDV 380
R AL+ L Q +F +L+ + + V D L + ++ + L K+G
Sbjct: 612 GRKAALDKLLPIQRADFVGILRAMRGLPVTIRLLDPPLHEFVPHDAAAQFELAQKLGMPA 671
Query: 381 ERIKQDVKALDE 392
E+++ V AL E
Sbjct: 672 EKVRNRVNALHE 683
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB:
3alg_A*
Length = 353
Score = 27.6 bits (62), Expect = 6.8
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 339 AQAGNFATLLKELESVQVDLASNLTNNQSLLTSLEGKMGSDVERIKQDVKALDE 392
A N TLL E ++ + + +LL + V + V++L
Sbjct: 122 ADMTNLGTLLNEW-RTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLAR 174
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 27.8 bits (62), Expect = 6.8
Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 27/147 (18%)
Query: 38 KQATLKFKDKTISVNRADFSDSLNKLHKYG--YDVLSQDWELVAQGEKETP--LQKYQRL 93
+ A L + + + + KL K G +D++ D Q EK+ L+ Y +
Sbjct: 258 ENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNV 317
Query: 94 QCELKELMDEV--------SQIKEPAE-----NSASDKAKLSVQQIEELVSQVSAIKLDK 140
L+ + SQ + +A KA ++ +E +Q
Sbjct: 318 NFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQ-------- 369
Query: 141 ILGPDLLESLSDVEGAALKTLVMRLDS 167
PD ++ + LK L + ++
Sbjct: 370 --APDHPILMASKDTEYLKCLFLYVED 394
>3rmr_A ATR1, avirulence protein; effector, RPP1-recognized, alpha-helical,
W-motif, seahorse, RPP1, R-protein, protein binding;
2.30A {Hyaloperonospora parasitica}
Length = 260
Score = 27.5 bits (60), Expect = 6.9
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 56 FSDSLNKLHKYGYDVL----SQDWELVAQGEKETPLQKYQRLQCELKELMDEVSQIKEPA 111
FS L+ + K D S+ W +K+ P ++R L E I+
Sbjct: 180 FSAVLHAMEKPDADSRVLESSKKWMFQCYAQKQFPTPVFERT---LAAYQSEDYAIR--- 233
Query: 112 ENSASDKAKLSVQQIEELVSQVSAI 136
+ + KLS+ QIEELV + S I
Sbjct: 234 -GARNHYEKLSLSQIEELVEEYSRI 257
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.339
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,431,647
Number of extensions: 309282
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 57
Length of query: 399
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 303
Effective length of database: 4,021,377
Effective search space: 1218477231
Effective search space used: 1218477231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.3 bits)