RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9591
         (399 letters)



>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase)
           {Lactobacillus plantarum [TaxId: 1590]}
          Length = 266

 Score = 29.9 bits (67), Expect = 0.47
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 312 LYE-LSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELE 352
               L    +   V   L+ L+A E+ H     F    +ELE
Sbjct: 154 QVSRLYSMTEDEGVRDMLKFLLARETQHQLQ--FMKAQEELE 193


>d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase
           {Streptomyces plicatus, endoglycosidase H [TaxId: 1922]}
          Length = 265

 Score = 29.3 bits (65), Expect = 0.85
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 44  FKDKTISVNRADFSDSL-NKLHKYGYDVLSQDWELVAQGEKETP---LQKYQRLQCELKE 99
           F +       + F+  L + + KYG D +  D E    G   T       +  L   L+ 
Sbjct: 94  FANFPSQQAASAFAKQLSDAVAKYGLDGVDFDDEYAEYGNNGTAQPNDSSFVHLVTALRA 153

Query: 100 LMDE 103
            M +
Sbjct: 154 NMPD 157


>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA
           reductase {Pseudomonas mevalonii [TaxId: 32044]}
          Length = 110

 Score = 27.5 bits (61), Expect = 1.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 262 LRAQINLIDAAHCDAYDARITHLSNKLDKIIEKANSVDP 300
           + AQ+ ++     D  +AR++ L  K D+IIE AN  D 
Sbjct: 2   MHAQVQIVGIQ--DPLNARLSLLRRK-DEIIELANRKDQ 37


>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
           and C-terminal domains {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 324

 Score = 27.2 bits (59), Expect = 4.4
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 10/53 (18%)

Query: 114 SASDKAKLSVQQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLD 166
           +A  KA   ++ +E   +Q           PD    ++  +   LK L + ++
Sbjct: 279 AAGAKAGKFLKMLEPYRTQ----------APDHPILMASKDTEYLKCLFLYVE 321


>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus
           thermophilus [TaxId: 274]}
          Length = 299

 Score = 26.4 bits (58), Expect = 5.8
 Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 312 LYE-LSRSVDSALVPRTLERLIALESLHAQAGNFATLLKELESVQVD 357
               +    D+ +    +  L+    +HA A  +   L+ L  V++ 
Sbjct: 161 HKLRVYEMTDNPVAREMIGYLLVRGGVHAAA--YGKALESLTGVEMT 205


>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 90

 Score = 25.2 bits (55), Expect = 6.5
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 82  EKETPLQKYQRLQCELKELMDEVSQIKEPAENSASDK 118
           E+ T  +K +R+Q  LK L  E++  ++ ++ +A+D 
Sbjct: 20  ERTTEAEKNERVQKHLKALTSELANARDESKKTANDM 56


>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
           central and FMN domains {Azospirillum brasilense [TaxId:
           192]}
          Length = 771

 Score = 26.4 bits (58), Expect = 7.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 208 TSLEQRLIKLENLLGEHSSSVRLIKLEN 235
            SL+ RL  L N+L E  +  RL++LE+
Sbjct: 98  MSLKTRLGNLGNILDEDETQTRLLQLES 125


>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase
           {Escherichia coli [TaxId: 562]}
          Length = 150

 Score = 25.2 bits (55), Expect = 9.3
 Identities = 15/65 (23%), Positives = 25/65 (38%)

Query: 119 AKLSVQQIEELVSQVSAIKLDKILGPDLLESLSDVEGAALKTLVMRLDSFALSNSKTPSS 178
           A+L+      L   ++      +L  + + SL    G     L   L   A + ++TP S
Sbjct: 10  AQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLS 69

Query: 179 KGGVG 183
              VG
Sbjct: 70  NFNVG 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.128    0.339 

Gapped
Lambda     K      H
   0.267   0.0565    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,262,762
Number of extensions: 54223
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 15
Length of query: 399
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,213,086
Effective search space: 378482832
Effective search space used: 378482832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.9 bits)