Query psy9593
Match_columns 84
No_of_seqs 175 out of 1021
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 23:38:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01492 Aos1_SUMO Ubiquitin ac 99.9 8E-26 1.7E-30 154.4 5.3 74 9-83 10-83 (197)
2 PRK05690 molybdopterin biosynt 99.9 1.7E-25 3.7E-30 157.0 5.2 77 6-83 18-94 (245)
3 cd00757 ThiF_MoeB_HesA_family 99.9 2.2E-25 4.7E-30 154.5 5.3 76 7-83 8-83 (228)
4 cd01491 Ube1_repeat1 Ubiquitin 99.9 2.7E-25 5.9E-30 159.5 5.6 80 2-83 2-81 (286)
5 TIGR02356 adenyl_thiF thiazole 99.9 2.6E-25 5.6E-30 152.1 4.8 77 6-83 7-83 (202)
6 cd01485 E1-1_like Ubiquitin ac 99.9 5.3E-25 1.2E-29 150.4 6.2 74 9-83 8-83 (198)
7 PRK07411 hypothetical protein; 99.9 4.1E-25 8.9E-30 163.6 5.7 78 5-83 23-100 (390)
8 PRK08223 hypothetical protein; 99.9 6.7E-25 1.5E-29 157.6 5.9 75 8-83 15-89 (287)
9 TIGR02355 moeB molybdopterin s 99.9 7.5E-25 1.6E-29 153.5 5.8 78 5-83 9-86 (240)
10 PRK05597 molybdopterin biosynt 99.9 1.1E-24 2.3E-29 159.7 5.6 78 5-83 13-90 (355)
11 PRK07878 molybdopterin biosynt 99.9 1.3E-24 2.9E-29 160.8 5.7 77 6-83 28-104 (392)
12 cd00755 YgdL_like Family of ac 99.9 3.5E-24 7.5E-29 149.8 5.2 73 10-83 1-73 (231)
13 PRK05600 thiamine biosynthesis 99.9 8.5E-24 1.9E-28 155.9 5.3 78 5-83 26-103 (370)
14 PRK08644 thiamine biosynthesis 99.9 1.2E-23 2.6E-28 145.1 4.5 80 2-83 10-89 (212)
15 PTZ00245 ubiquitin activating 99.9 2.1E-23 4.5E-28 148.3 5.3 72 10-83 16-87 (287)
16 cd01493 APPBP1_RUB Ubiquitin a 99.9 2.3E-23 5.1E-28 156.0 5.2 74 9-83 9-82 (425)
17 PRK08328 hypothetical protein; 99.9 8.5E-23 1.8E-27 142.2 5.5 72 10-82 17-89 (231)
18 PRK12475 thiamine/molybdopteri 99.9 7E-23 1.5E-27 149.5 5.3 77 6-83 10-88 (338)
19 PRK07688 thiamine/molybdopteri 99.9 8.2E-23 1.8E-27 149.2 5.2 77 6-83 10-88 (339)
20 PRK15116 sulfur acceptor prote 99.9 9.2E-23 2E-27 145.4 5.2 75 8-83 18-92 (268)
21 PF00899 ThiF: ThiF family; I 99.9 3.3E-22 7.2E-27 128.5 5.2 64 19-83 1-64 (135)
22 PRK08762 molybdopterin biosynt 99.9 2.8E-22 6.1E-27 147.4 5.5 77 6-83 121-197 (376)
23 cd01488 Uba3_RUB Ubiquitin act 99.9 1.9E-22 4E-27 145.2 3.9 61 22-83 1-61 (291)
24 cd01484 E1-2_like Ubiquitin ac 99.9 2.2E-22 4.9E-27 140.9 4.1 61 22-83 1-61 (234)
25 COG0476 ThiF Dinucleotide-util 99.9 5.4E-22 1.2E-26 139.0 5.8 77 5-82 15-91 (254)
26 PRK14851 hypothetical protein; 99.9 5.4E-22 1.2E-26 155.3 5.7 73 10-83 33-105 (679)
27 TIGR01408 Ube1 ubiquitin-activ 99.9 4.6E-22 1E-26 160.6 5.4 74 9-83 13-86 (1008)
28 TIGR01408 Ube1 ubiquitin-activ 99.9 5.3E-22 1.2E-26 160.2 5.2 74 9-83 408-486 (1008)
29 PRK14852 hypothetical protein; 99.8 1.1E-21 2.3E-26 157.6 5.7 75 8-83 320-394 (989)
30 cd01489 Uba2_SUMO Ubiquitin ac 99.8 7.6E-22 1.6E-26 143.1 4.3 61 22-83 1-61 (312)
31 TIGR02354 thiF_fam2 thiamine b 99.8 1E-21 2.2E-26 134.6 4.3 80 2-83 3-82 (200)
32 KOG2015|consensus 99.8 1.6E-21 3.4E-26 142.4 5.1 74 8-82 28-101 (422)
33 cd01483 E1_enzyme_family Super 99.8 4.7E-21 1E-25 123.8 4.1 61 22-83 1-61 (143)
34 KOG2013|consensus 99.8 8.2E-21 1.8E-25 143.7 4.7 71 11-82 3-73 (603)
35 TIGR01381 E1_like_apg7 E1-like 99.8 9.2E-21 2E-25 147.4 4.5 76 4-83 325-403 (664)
36 cd01490 Ube1_repeat2 Ubiquitin 99.8 1.1E-20 2.3E-25 142.1 4.4 61 22-83 1-66 (435)
37 PRK06153 hypothetical protein; 99.8 2.7E-20 5.8E-25 138.2 4.9 77 6-83 162-241 (393)
38 COG1179 Dinucleotide-utilizing 99.8 2.6E-20 5.7E-25 131.3 4.4 74 9-83 19-92 (263)
39 cd01486 Apg7 Apg7 is an E1-lik 99.8 3.9E-20 8.5E-25 133.8 4.6 61 22-83 1-63 (307)
40 KOG2014|consensus 99.8 1.3E-19 2.8E-24 130.8 4.0 76 8-84 19-94 (331)
41 KOG2017|consensus 99.8 2.3E-20 5E-25 137.1 0.1 78 4-82 50-127 (427)
42 TIGR03736 PRTRC_ThiF PRTRC sys 99.8 4.5E-19 9.8E-24 125.1 3.9 64 18-83 9-82 (244)
43 PRK07877 hypothetical protein; 99.8 8.4E-19 1.8E-23 138.1 5.4 72 9-83 96-168 (722)
44 cd01487 E1_ThiF_like E1_ThiF_l 99.7 1E-18 2.2E-23 117.3 3.8 60 22-83 1-60 (174)
45 KOG2012|consensus 99.7 1E-18 2.3E-23 138.2 3.4 73 10-83 27-99 (1013)
46 KOG2012|consensus 99.7 2.1E-18 4.4E-23 136.5 3.9 72 10-82 420-496 (1013)
47 KOG2018|consensus 99.6 9.7E-17 2.1E-21 117.3 3.8 72 10-82 64-135 (430)
48 TIGR03603 cyclo_dehy_ocin bact 99.6 1.3E-16 2.9E-21 115.9 2.9 72 5-83 59-132 (318)
49 KOG2016|consensus 99.6 1.4E-16 3.1E-21 119.8 2.4 74 8-82 15-88 (523)
50 KOG2336|consensus 99.2 7.7E-12 1.7E-16 90.9 4.6 70 11-82 73-142 (422)
51 KOG2337|consensus 99.2 5.6E-12 1.2E-16 96.8 2.4 68 15-83 335-405 (669)
52 TIGR03693 ocin_ThiF_like putat 98.3 5E-07 1.1E-11 71.0 3.9 49 13-63 122-170 (637)
53 PF01488 Shikimate_DH: Shikima 97.9 3.3E-05 7.3E-10 49.6 5.1 45 16-60 8-52 (135)
54 TIGR03882 cyclo_dehyd_2 bacter 97.7 3.7E-05 7.9E-10 52.6 2.9 58 8-66 93-160 (193)
55 cd05311 NAD_bind_2_malic_enz N 97.6 0.00012 2.6E-09 51.0 4.2 37 17-53 22-60 (226)
56 PRK12549 shikimate 5-dehydroge 97.5 0.00015 3.3E-09 52.0 4.5 39 18-56 125-163 (284)
57 TIGR01809 Shik-DH-AROM shikima 97.2 0.00056 1.2E-08 49.0 4.6 37 18-54 123-159 (282)
58 PRK14027 quinate/shikimate deh 97.1 0.00088 1.9E-08 48.2 4.5 43 18-60 125-167 (283)
59 cd05191 NAD_bind_amino_acid_DH 97.1 0.0012 2.6E-08 39.2 4.4 47 18-65 21-67 (86)
60 PF00070 Pyr_redox: Pyridine n 97.1 0.0015 3.2E-08 38.0 4.5 32 22-54 1-32 (80)
61 PRK00258 aroE shikimate 5-dehy 97.0 0.0013 2.9E-08 46.7 4.6 37 18-54 121-157 (278)
62 PRK12749 quinate/shikimate deh 97.0 0.0014 3E-08 47.3 4.7 36 18-53 122-157 (288)
63 COG4015 Predicted dinucleotide 96.9 0.0013 2.7E-08 45.1 3.6 60 19-81 17-79 (217)
64 PF03949 Malic_M: Malic enzyme 96.8 0.0021 4.6E-08 46.0 4.6 39 16-54 21-69 (255)
65 PRK12548 shikimate 5-dehydroge 96.8 0.0022 4.7E-08 46.0 4.6 37 18-54 124-160 (289)
66 COG1748 LYS9 Saccharopine dehy 96.8 0.002 4.3E-08 48.6 4.5 36 21-56 2-37 (389)
67 cd01065 NAD_bind_Shikimate_DH 96.8 0.0027 5.8E-08 40.6 4.5 37 18-54 17-53 (155)
68 PRK06718 precorrin-2 dehydroge 96.8 0.0026 5.7E-08 43.6 4.4 37 17-54 7-43 (202)
69 PF00056 Ldh_1_N: lactate/mala 96.8 0.0038 8.2E-08 40.5 4.9 33 21-53 1-35 (141)
70 PRK13940 glutamyl-tRNA reducta 96.7 0.0029 6.2E-08 47.9 4.4 39 17-55 178-216 (414)
71 PTZ00117 malate dehydrogenase; 96.7 0.0035 7.5E-08 45.6 4.7 36 19-54 4-39 (319)
72 PRK06719 precorrin-2 dehydroge 96.7 0.0032 7E-08 41.6 4.1 38 17-55 10-47 (157)
73 cd00762 NAD_bind_malic_enz NAD 96.7 0.002 4.3E-08 46.1 3.2 40 16-55 21-70 (254)
74 PTZ00082 L-lactate dehydrogena 96.6 0.0037 8.1E-08 45.6 4.7 37 18-54 4-40 (321)
75 cd05291 HicDH_like L-2-hydroxy 96.6 0.0038 8.2E-08 45.0 4.7 34 21-54 1-35 (306)
76 PRK12550 shikimate 5-dehydroge 96.6 0.0043 9.4E-08 44.4 4.7 35 20-54 122-156 (272)
77 TIGR01035 hemA glutamyl-tRNA r 96.5 0.0042 9.2E-08 46.7 4.5 38 17-54 177-214 (417)
78 cd05312 NAD_bind_1_malic_enz N 96.5 0.0038 8.3E-08 45.2 4.1 40 16-55 21-70 (279)
79 TIGR01373 soxB sarcosine oxida 96.5 0.0068 1.5E-07 44.4 5.3 38 20-57 30-68 (407)
80 cd01075 NAD_bind_Leu_Phe_Val_D 96.5 0.0054 1.2E-07 41.9 4.4 37 17-54 25-61 (200)
81 PF02826 2-Hacid_dh_C: D-isome 96.5 0.0065 1.4E-07 40.5 4.6 41 16-57 32-72 (178)
82 cd05211 NAD_bind_Glu_Leu_Phe_V 96.5 0.0054 1.2E-07 42.6 4.3 38 17-54 20-57 (217)
83 COG0569 TrkA K+ transport syst 96.4 0.0059 1.3E-07 42.5 4.5 33 21-54 1-33 (225)
84 PF13241 NAD_binding_7: Putati 96.4 0.0034 7.5E-08 38.5 3.0 37 17-54 4-40 (103)
85 cd05213 NAD_bind_Glutamyl_tRNA 96.4 0.0055 1.2E-07 44.3 4.4 37 18-54 176-212 (311)
86 PRK05708 2-dehydropantoate 2-r 96.4 0.0063 1.4E-07 43.8 4.5 33 20-53 2-34 (305)
87 COG0665 DadA Glycine/D-amino a 96.4 0.0075 1.6E-07 43.4 4.8 38 19-57 3-40 (387)
88 COG0169 AroE Shikimate 5-dehyd 96.4 0.0069 1.5E-07 43.9 4.6 41 19-59 125-165 (283)
89 PF01494 FAD_binding_3: FAD bi 96.3 0.0057 1.2E-07 42.8 4.0 34 21-55 2-35 (356)
90 PF01266 DAO: FAD dependent ox 96.3 0.0085 1.8E-07 41.9 4.8 34 22-56 1-34 (358)
91 PRK11259 solA N-methyltryptoph 96.3 0.0068 1.5E-07 43.6 4.4 35 20-55 3-37 (376)
92 PRK00045 hemA glutamyl-tRNA re 96.3 0.0069 1.5E-07 45.6 4.5 37 18-54 180-216 (423)
93 PRK00066 ldh L-lactate dehydro 96.3 0.007 1.5E-07 44.1 4.4 34 19-52 5-39 (315)
94 PRK00676 hemA glutamyl-tRNA re 96.2 0.0082 1.8E-07 44.5 4.4 37 17-53 171-207 (338)
95 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.0096 2.1E-07 39.9 4.4 37 17-54 41-78 (168)
96 TIGR02853 spore_dpaA dipicolin 96.2 0.0093 2E-07 42.9 4.4 37 17-54 148-184 (287)
97 PRK14982 acyl-ACP reductase; P 96.2 0.009 2E-07 44.3 4.3 44 17-60 152-197 (340)
98 PF02719 Polysacc_synt_2: Poly 96.2 0.0076 1.7E-07 43.9 3.9 41 23-64 1-42 (293)
99 PRK12409 D-amino acid dehydrog 96.1 0.01 2.2E-07 43.6 4.6 33 21-54 2-34 (410)
100 COG0373 HemA Glutamyl-tRNA red 96.1 0.0088 1.9E-07 45.5 4.3 44 17-60 175-218 (414)
101 PRK09126 hypothetical protein; 96.1 0.0095 2.1E-07 43.2 4.4 36 19-55 2-37 (392)
102 PRK06522 2-dehydropantoate 2-r 96.1 0.011 2.3E-07 41.6 4.5 31 22-53 2-32 (304)
103 PRK12367 short chain dehydroge 96.1 0.017 3.7E-07 40.1 5.4 43 11-54 5-48 (245)
104 TIGR01470 cysG_Nterm siroheme 96.1 0.011 2.4E-07 40.6 4.4 37 18-55 7-43 (205)
105 PF03446 NAD_binding_2: NAD bi 96.1 0.012 2.6E-07 38.6 4.3 33 21-54 2-34 (163)
106 cd05290 LDH_3 A subgroup of L- 96.1 0.011 2.3E-07 43.1 4.3 32 22-53 1-33 (307)
107 COG1086 Predicted nucleoside-d 96.1 0.016 3.5E-07 45.8 5.5 53 8-60 238-291 (588)
108 TIGR01377 soxA_mon sarcosine o 96.1 0.013 2.7E-07 42.3 4.7 33 22-55 2-34 (380)
109 PLN00203 glutamyl-tRNA reducta 96.0 0.0095 2.1E-07 46.4 4.1 37 18-54 264-300 (519)
110 PF02737 3HCDH_N: 3-hydroxyacy 96.0 0.013 2.8E-07 39.3 4.2 34 22-56 1-34 (180)
111 PRK05335 tRNA (uracil-5-)-meth 96.0 0.013 2.8E-07 44.9 4.6 34 20-54 2-35 (436)
112 PRK07494 2-octaprenyl-6-methox 96.0 0.012 2.6E-07 42.8 4.2 35 20-55 7-41 (388)
113 PLN02520 bifunctional 3-dehydr 95.9 0.012 2.6E-07 45.7 4.3 35 18-53 377-411 (529)
114 cd05292 LDH_2 A subgroup of L- 95.9 0.016 3.4E-07 41.9 4.7 33 22-54 2-35 (308)
115 PRK06185 hypothetical protein; 95.9 0.015 3.3E-07 42.5 4.6 35 19-54 5-39 (407)
116 PRK06184 hypothetical protein; 95.9 0.014 3E-07 44.3 4.5 34 19-53 2-35 (502)
117 TIGR03364 HpnW_proposed FAD de 95.9 0.017 3.6E-07 41.6 4.8 34 22-56 2-35 (365)
118 PRK08013 oxidoreductase; Provi 95.9 0.013 2.9E-07 43.1 4.3 35 20-55 3-37 (400)
119 PRK00141 murD UDP-N-acetylmura 95.9 0.012 2.5E-07 44.8 4.1 41 12-53 7-47 (473)
120 PRK07236 hypothetical protein; 95.9 0.016 3.4E-07 42.3 4.5 36 18-54 4-39 (386)
121 PRK05714 2-octaprenyl-3-methyl 95.9 0.012 2.6E-07 43.1 3.9 34 20-54 2-35 (405)
122 TIGR02028 ChlP geranylgeranyl 95.9 0.015 3.3E-07 43.1 4.4 31 22-53 2-32 (398)
123 PRK06223 malate dehydrogenase; 95.8 0.017 3.7E-07 41.3 4.5 32 21-52 3-34 (307)
124 PRK00711 D-amino acid dehydrog 95.8 0.016 3.5E-07 42.4 4.5 32 22-54 2-33 (416)
125 cd05293 LDH_1 A subgroup of L- 95.8 0.017 3.7E-07 42.1 4.5 34 20-53 3-37 (312)
126 PRK06249 2-dehydropantoate 2-r 95.8 0.016 3.6E-07 41.6 4.4 34 20-54 5-38 (313)
127 COG0281 SfcA Malic enzyme [Ene 95.8 0.012 2.5E-07 45.0 3.7 41 16-56 195-237 (432)
128 PRK13403 ketol-acid reductoiso 95.8 0.016 3.5E-07 43.1 4.3 37 15-52 11-47 (335)
129 PRK06753 hypothetical protein; 95.8 0.019 4.1E-07 41.4 4.6 33 21-54 1-33 (373)
130 PRK01747 mnmC bifunctional tRN 95.8 0.016 3.5E-07 45.6 4.5 33 21-54 261-293 (662)
131 PRK05732 2-octaprenyl-6-methox 95.8 0.016 3.4E-07 42.0 4.2 34 19-53 2-38 (395)
132 PRK08306 dipicolinate synthase 95.8 0.019 4.1E-07 41.4 4.5 36 18-54 150-185 (296)
133 PRK09260 3-hydroxybutyryl-CoA 95.8 0.02 4.4E-07 40.6 4.6 33 21-54 2-34 (288)
134 PRK06035 3-hydroxyacyl-CoA deh 95.8 0.02 4.2E-07 40.8 4.5 33 21-54 4-36 (291)
135 PRK08773 2-octaprenyl-3-methyl 95.7 0.017 3.6E-07 42.2 4.2 35 19-54 5-39 (392)
136 PRK07608 ubiquinone biosynthes 95.7 0.019 4.1E-07 41.6 4.4 35 20-55 5-39 (388)
137 PRK07364 2-octaprenyl-6-methox 95.7 0.018 4E-07 42.1 4.3 35 20-55 18-52 (415)
138 PRK07530 3-hydroxybutyryl-CoA 95.7 0.02 4.4E-07 40.6 4.4 33 20-53 4-36 (292)
139 PRK08849 2-octaprenyl-3-methyl 95.7 0.02 4.3E-07 41.9 4.4 34 20-54 3-36 (384)
140 PF02558 ApbA: Ketopantoate re 95.7 0.025 5.5E-07 36.0 4.4 31 23-54 1-31 (151)
141 PRK08850 2-octaprenyl-6-methox 95.7 0.018 3.8E-07 42.4 4.1 33 20-53 4-36 (405)
142 PRK08163 salicylate hydroxylas 95.7 0.021 4.5E-07 41.5 4.5 34 20-54 4-37 (396)
143 TIGR02023 BchP-ChlP geranylger 95.6 0.022 4.7E-07 41.8 4.5 31 22-53 2-32 (388)
144 PRK08229 2-dehydropantoate 2-r 95.6 0.02 4.4E-07 41.2 4.2 33 21-54 3-35 (341)
145 PRK06847 hypothetical protein; 95.6 0.025 5.4E-07 40.8 4.6 34 20-54 4-37 (375)
146 PRK06130 3-hydroxybutyryl-CoA 95.6 0.025 5.4E-07 40.4 4.6 33 21-54 5-37 (311)
147 PRK07819 3-hydroxybutyryl-CoA 95.6 0.023 5E-07 40.7 4.4 35 21-56 6-40 (286)
148 PRK05808 3-hydroxybutyryl-CoA 95.6 0.025 5.5E-07 39.9 4.5 32 21-53 4-35 (282)
149 PRK08264 short chain dehydroge 95.5 0.026 5.7E-07 37.9 4.3 36 18-53 4-40 (238)
150 PRK08293 3-hydroxybutyryl-CoA 95.5 0.026 5.7E-07 40.1 4.5 33 21-54 4-36 (287)
151 COG0654 UbiH 2-polyprenyl-6-me 95.5 0.024 5.2E-07 41.6 4.4 33 20-53 2-34 (387)
152 PRK07231 fabG 3-ketoacyl-(acyl 95.5 0.024 5.1E-07 38.2 4.1 36 18-54 3-39 (251)
153 PLN02545 3-hydroxybutyryl-CoA 95.5 0.026 5.6E-07 40.1 4.4 33 21-54 5-37 (295)
154 TIGR03329 Phn_aa_oxid putative 95.5 0.032 6.9E-07 42.0 5.1 36 20-56 24-61 (460)
155 COG0039 Mdh Malate/lactate deh 95.5 0.022 4.8E-07 41.9 4.1 33 21-53 1-34 (313)
156 PRK05479 ketol-acid reductoiso 95.5 0.025 5.4E-07 41.8 4.3 37 16-53 13-49 (330)
157 PRK08244 hypothetical protein; 95.5 0.028 6E-07 42.5 4.7 34 20-54 2-35 (493)
158 cd00300 LDH_like L-lactate deh 95.5 0.023 4.9E-07 41.0 4.1 31 23-53 1-32 (300)
159 TIGR00507 aroE shikimate 5-deh 95.5 0.029 6.3E-07 39.6 4.5 34 19-53 116-149 (270)
160 PRK13243 glyoxylate reductase; 95.5 0.025 5.4E-07 41.4 4.3 37 16-53 146-182 (333)
161 TIGR00518 alaDH alanine dehydr 95.5 0.027 5.9E-07 41.9 4.5 36 18-54 165-200 (370)
162 PLN02602 lactate dehydrogenase 95.5 0.025 5.5E-07 41.9 4.3 33 21-53 38-71 (350)
163 TIGR01763 MalateDH_bact malate 95.5 0.028 6.2E-07 40.7 4.5 32 21-52 2-33 (305)
164 PRK12480 D-lactate dehydrogena 95.5 0.027 5.8E-07 41.3 4.4 36 17-53 143-178 (330)
165 COG1893 ApbA Ketopantoate redu 95.4 0.024 5.3E-07 41.2 4.1 31 21-52 1-31 (307)
166 PF13738 Pyr_redox_3: Pyridine 95.4 0.03 6.6E-07 36.8 4.2 30 24-53 1-30 (203)
167 TIGR01988 Ubi-OHases Ubiquinon 95.4 0.025 5.5E-07 40.6 4.1 33 22-55 1-33 (385)
168 PRK11728 hydroxyglutarate oxid 95.4 0.03 6.5E-07 41.0 4.6 33 21-54 3-37 (393)
169 TIGR00137 gid_trmFO tRNA:m(5)U 95.4 0.03 6.4E-07 42.8 4.6 32 21-53 1-32 (433)
170 PF02254 TrkA_N: TrkA-N domain 95.4 0.045 9.8E-07 33.3 4.7 33 23-56 1-33 (116)
171 PRK08020 ubiF 2-octaprenyl-3-m 95.4 0.024 5.2E-07 41.2 3.9 34 20-54 5-38 (391)
172 cd01338 MDH_choloroplast_like 95.4 0.026 5.6E-07 41.3 4.1 33 20-52 2-41 (322)
173 PRK12862 malic enzyme; Reviewe 95.4 0.019 4E-07 46.7 3.6 40 16-55 189-230 (763)
174 PRK06834 hypothetical protein; 95.4 0.03 6.4E-07 42.8 4.5 35 19-54 2-36 (488)
175 PRK07502 cyclohexadienyl dehyd 95.3 0.032 6.9E-07 40.0 4.4 35 20-54 6-41 (307)
176 PF13738 Pyr_redox_3: Pyridine 95.3 0.022 4.8E-07 37.5 3.4 36 16-52 163-198 (203)
177 TIGR01984 UbiH 2-polyprenyl-6- 95.3 0.027 5.8E-07 40.7 4.0 32 22-54 1-33 (382)
178 PRK06126 hypothetical protein; 95.3 0.034 7.4E-07 42.5 4.7 34 20-54 7-40 (545)
179 TIGR00465 ilvC ketol-acid redu 95.3 0.026 5.6E-07 41.3 3.9 34 18-52 1-34 (314)
180 PLN00093 geranylgeranyl diphos 95.3 0.033 7.2E-07 42.3 4.6 33 21-54 40-72 (450)
181 PRK08243 4-hydroxybenzoate 3-m 95.3 0.035 7.7E-07 40.7 4.6 34 20-54 2-35 (392)
182 TIGR02360 pbenz_hydroxyl 4-hyd 95.3 0.037 7.9E-07 40.8 4.7 34 20-54 2-35 (390)
183 PRK01438 murD UDP-N-acetylmura 95.3 0.027 5.9E-07 42.5 4.1 42 11-53 6-48 (480)
184 PRK14619 NAD(P)H-dependent gly 95.3 0.033 7.1E-07 40.0 4.3 34 20-54 4-37 (308)
185 cd01076 NAD_bind_1_Glu_DH NAD( 95.3 0.033 7.2E-07 38.9 4.2 36 17-52 28-63 (227)
186 PRK07045 putative monooxygenas 95.3 0.033 7.1E-07 40.6 4.4 35 20-55 5-39 (388)
187 PRK12921 2-dehydropantoate 2-r 95.3 0.036 7.8E-07 39.1 4.5 31 21-52 1-31 (305)
188 PRK11101 glpA sn-glycerol-3-ph 95.3 0.035 7.5E-07 43.0 4.7 36 20-56 6-41 (546)
189 TIGR02032 GG-red-SF geranylger 95.3 0.037 8.1E-07 38.0 4.4 33 22-55 2-34 (295)
190 PRK05476 S-adenosyl-L-homocyst 95.3 0.031 6.8E-07 42.6 4.3 38 18-56 210-247 (425)
191 TIGR01772 MDH_euk_gproteo mala 95.2 0.032 6.9E-07 40.8 4.2 33 22-54 1-35 (312)
192 PRK09310 aroDE bifunctional 3- 95.2 0.034 7.4E-07 42.6 4.5 36 18-54 330-365 (477)
193 PRK06129 3-hydroxyacyl-CoA deh 95.2 0.035 7.7E-07 39.8 4.3 33 21-54 3-35 (308)
194 PRK15438 erythronate-4-phospha 95.2 0.031 6.6E-07 42.0 4.1 36 17-53 113-148 (378)
195 PF01210 NAD_Gly3P_dh_N: NAD-d 95.2 0.034 7.4E-07 36.3 3.9 32 22-54 1-32 (157)
196 PLN02928 oxidoreductase family 95.2 0.032 6.8E-07 41.2 4.1 36 17-53 156-191 (347)
197 PRK07066 3-hydroxybutyryl-CoA 95.2 0.037 8.1E-07 40.6 4.5 33 21-54 8-40 (321)
198 PRK05868 hypothetical protein; 95.2 0.039 8.4E-07 40.5 4.5 33 21-54 2-34 (372)
199 cd01078 NAD_bind_H4MPT_DH NADP 95.2 0.042 9.1E-07 36.7 4.4 36 17-53 25-61 (194)
200 PRK14106 murD UDP-N-acetylmura 95.2 0.035 7.5E-07 41.4 4.3 36 18-54 3-38 (450)
201 PLN00106 malate dehydrogenase 95.2 0.037 8.1E-07 40.6 4.4 36 19-54 17-54 (323)
202 PRK14192 bifunctional 5,10-met 95.2 0.037 8E-07 40.0 4.3 37 17-54 156-193 (283)
203 cd00401 AdoHcyase S-adenosyl-L 95.2 0.037 8.1E-07 42.0 4.5 37 18-55 200-236 (413)
204 PRK00257 erythronate-4-phospha 95.2 0.032 7E-07 41.9 4.1 36 17-53 113-148 (381)
205 PRK07588 hypothetical protein; 95.2 0.04 8.8E-07 40.2 4.6 33 21-54 1-33 (391)
206 PRK08132 FAD-dependent oxidore 95.1 0.041 8.9E-07 42.2 4.7 35 19-54 22-56 (547)
207 PRK06617 2-octaprenyl-6-methox 95.1 0.035 7.7E-07 40.5 4.1 33 21-54 2-34 (374)
208 PLN02172 flavin-containing mon 95.1 0.03 6.4E-07 42.7 3.8 37 16-53 6-42 (461)
209 PRK00094 gpsA NAD(P)H-dependen 95.1 0.044 9.4E-07 38.9 4.4 33 21-54 2-34 (325)
210 cd01339 LDH-like_MDH L-lactate 95.1 0.036 7.9E-07 39.7 4.1 31 23-53 1-31 (300)
211 TIGR01292 TRX_reduct thioredox 95.1 0.051 1.1E-06 37.5 4.7 32 22-54 2-33 (300)
212 PRK09754 phenylpropionate diox 95.1 0.043 9.2E-07 40.5 4.5 37 19-55 2-39 (396)
213 PRK15469 ghrA bifunctional gly 95.1 0.04 8.7E-07 40.1 4.2 36 17-53 133-168 (312)
214 PRK12861 malic enzyme; Reviewe 95.1 0.026 5.6E-07 45.9 3.5 40 16-55 185-226 (764)
215 PRK14618 NAD(P)H-dependent gly 95.0 0.046 9.9E-07 39.4 4.5 33 21-54 5-37 (328)
216 PRK06194 hypothetical protein; 95.0 0.031 6.8E-07 38.7 3.5 35 18-53 4-39 (287)
217 PRK07232 bifunctional malic en 95.0 0.031 6.6E-07 45.4 3.9 39 16-54 181-221 (752)
218 cd01337 MDH_glyoxysomal_mitoch 95.0 0.042 9.1E-07 40.2 4.3 33 21-53 1-35 (310)
219 PRK06198 short chain dehydroge 95.0 0.03 6.4E-07 38.2 3.3 38 17-54 3-41 (260)
220 PRK12266 glpD glycerol-3-phosp 95.0 0.057 1.2E-06 41.4 5.1 36 20-56 6-41 (508)
221 TIGR01790 carotene-cycl lycope 95.0 0.041 8.8E-07 40.0 4.2 32 22-54 1-32 (388)
222 PRK07190 hypothetical protein; 95.0 0.046 1E-06 41.8 4.6 33 21-54 6-38 (487)
223 PRK06183 mhpA 3-(3-hydroxyphen 95.0 0.048 1E-06 41.8 4.7 35 19-54 9-43 (538)
224 PRK14620 NAD(P)H-dependent gly 95.0 0.048 1E-06 39.2 4.4 32 22-54 2-33 (326)
225 PRK06475 salicylate hydroxylas 95.0 0.05 1.1E-06 39.9 4.6 34 20-54 2-35 (400)
226 cd00704 MDH Malate dehydrogena 94.9 0.044 9.5E-07 40.2 4.2 34 21-54 1-41 (323)
227 PRK07417 arogenate dehydrogena 94.9 0.05 1.1E-06 38.5 4.4 32 22-54 2-33 (279)
228 TIGR01759 MalateDH-SF1 malate 94.9 0.042 9.1E-07 40.3 4.1 33 20-52 3-42 (323)
229 PRK10157 putative oxidoreducta 94.9 0.052 1.1E-06 40.7 4.6 34 20-54 5-38 (428)
230 PTZ00325 malate dehydrogenase; 94.9 0.043 9.4E-07 40.3 4.1 38 18-55 6-45 (321)
231 PRK07576 short chain dehydroge 94.9 0.038 8.3E-07 38.2 3.6 38 15-53 4-42 (264)
232 PRK12829 short chain dehydroge 94.9 0.064 1.4E-06 36.4 4.7 40 13-53 4-44 (264)
233 PRK08213 gluconate 5-dehydroge 94.9 0.052 1.1E-06 37.1 4.3 38 16-54 8-46 (259)
234 PF03807 F420_oxidored: NADP o 94.9 0.073 1.6E-06 31.4 4.4 39 22-60 1-42 (96)
235 PRK07538 hypothetical protein; 94.8 0.056 1.2E-06 39.9 4.6 33 21-54 1-33 (413)
236 PRK04176 ribulose-1,5-biphosph 94.8 0.086 1.9E-06 37.2 5.3 37 17-54 22-58 (257)
237 PLN02464 glycerol-3-phosphate 94.8 0.052 1.1E-06 42.9 4.5 35 21-56 72-106 (627)
238 PRK08217 fabG 3-ketoacyl-(acyl 94.8 0.066 1.4E-06 36.0 4.5 36 18-54 3-39 (253)
239 PF00106 adh_short: short chai 94.8 0.063 1.4E-06 34.1 4.1 33 21-53 1-34 (167)
240 PRK06841 short chain dehydroge 94.7 0.065 1.4E-06 36.4 4.4 36 17-53 12-48 (255)
241 PRK08294 phenol 2-monooxygenas 94.7 0.052 1.1E-06 42.9 4.4 34 19-53 31-65 (634)
242 PRK08945 putative oxoacyl-(acy 94.7 0.068 1.5E-06 36.3 4.5 38 16-54 8-46 (247)
243 PRK10669 putative cation:proto 94.7 0.063 1.4E-06 41.5 4.8 36 20-56 417-452 (558)
244 PLN03129 NADP-dependent malic 94.7 0.045 9.8E-07 43.3 4.0 39 16-54 317-366 (581)
245 PRK08265 short chain dehydroge 94.7 0.042 9.2E-07 37.8 3.5 37 17-54 3-40 (261)
246 PRK07666 fabG 3-ketoacyl-(acyl 94.7 0.051 1.1E-06 36.6 3.8 37 17-54 4-41 (239)
247 COG0644 FixC Dehydrogenases (f 94.7 0.06 1.3E-06 39.8 4.4 32 20-52 3-34 (396)
248 PRK07067 sorbitol dehydrogenas 94.7 0.055 1.2E-06 36.9 4.0 37 18-55 4-41 (257)
249 PRK06057 short chain dehydroge 94.7 0.061 1.3E-06 36.7 4.2 37 17-54 4-41 (255)
250 PRK06523 short chain dehydroge 94.7 0.055 1.2E-06 36.9 3.9 37 17-54 6-43 (260)
251 PRK07523 gluconate 5-dehydroge 94.7 0.07 1.5E-06 36.3 4.4 37 17-54 7-44 (255)
252 KOG0685|consensus 94.6 0.067 1.5E-06 41.6 4.6 46 7-52 8-53 (498)
253 TIGR01757 Malate-DH_plant mala 94.6 0.08 1.7E-06 39.9 5.0 35 20-54 44-85 (387)
254 TIGR01758 MDH_euk_cyt malate d 94.6 0.055 1.2E-06 39.6 4.1 31 22-52 1-38 (324)
255 TIGR03589 PseB UDP-N-acetylglu 94.6 0.07 1.5E-06 38.3 4.5 37 18-54 2-40 (324)
256 PRK13529 malate dehydrogenase; 94.6 0.051 1.1E-06 42.9 3.9 39 16-54 291-339 (563)
257 PRK06567 putative bifunctional 94.6 0.065 1.4E-06 44.9 4.7 39 18-57 381-419 (1028)
258 TIGR01832 kduD 2-deoxy-D-gluco 94.5 0.072 1.6E-06 36.0 4.3 36 18-54 3-39 (248)
259 PLN02985 squalene monooxygenas 94.5 0.068 1.5E-06 41.3 4.6 38 17-55 40-77 (514)
260 PRK12823 benD 1,6-dihydroxycyc 94.5 0.069 1.5E-06 36.4 4.1 36 17-53 5-41 (260)
261 PLN02256 arogenate dehydrogena 94.5 0.075 1.6E-06 38.6 4.5 37 17-54 33-69 (304)
262 PRK06996 hypothetical protein; 94.5 0.063 1.4E-06 39.5 4.1 34 21-54 12-48 (398)
263 PLN02253 xanthoxin dehydrogena 94.5 0.072 1.6E-06 36.9 4.2 36 17-53 15-51 (280)
264 PTZ00317 NADP-dependent malic 94.5 0.056 1.2E-06 42.6 3.9 39 16-54 293-341 (559)
265 PLN02494 adenosylhomocysteinas 94.5 0.074 1.6E-06 41.2 4.5 37 18-55 252-288 (477)
266 PRK13369 glycerol-3-phosphate 94.4 0.084 1.8E-06 40.3 4.8 35 21-56 7-41 (502)
267 PRK08507 prephenate dehydrogen 94.4 0.085 1.8E-06 37.2 4.5 32 22-53 2-34 (275)
268 TIGR01915 npdG NADPH-dependent 94.4 0.09 2E-06 36.0 4.5 32 22-54 2-34 (219)
269 TIGR00292 thiazole biosynthesi 94.4 0.13 2.9E-06 36.3 5.5 38 16-54 17-54 (254)
270 PRK12828 short chain dehydroge 94.4 0.072 1.6E-06 35.4 4.0 37 17-54 4-41 (239)
271 PF05834 Lycopene_cycl: Lycope 94.4 0.076 1.6E-06 39.1 4.4 33 23-56 2-36 (374)
272 PRK05442 malate dehydrogenase; 94.4 0.068 1.5E-06 39.3 4.1 33 20-52 4-43 (326)
273 PF01946 Thi4: Thi4 family; PD 94.4 0.12 2.6E-06 36.6 5.1 40 13-53 10-49 (230)
274 PRK07333 2-octaprenyl-6-methox 94.4 0.069 1.5E-06 38.8 4.1 33 21-54 2-36 (403)
275 PLN02463 lycopene beta cyclase 94.4 0.063 1.4E-06 40.9 4.0 37 17-54 25-61 (447)
276 TIGR00936 ahcY adenosylhomocys 94.4 0.075 1.6E-06 40.3 4.4 37 18-55 193-229 (406)
277 PRK06436 glycerate dehydrogena 94.3 0.071 1.5E-06 38.8 4.1 37 16-53 118-154 (303)
278 PTZ00075 Adenosylhomocysteinas 94.3 0.08 1.7E-06 41.0 4.5 38 17-55 251-288 (476)
279 PRK09496 trkA potassium transp 94.3 0.081 1.8E-06 39.3 4.4 35 19-54 230-264 (453)
280 PRK12826 3-ketoacyl-(acyl-carr 94.3 0.064 1.4E-06 36.0 3.6 36 17-53 3-39 (251)
281 PRK07531 bifunctional 3-hydrox 94.3 0.078 1.7E-06 40.7 4.4 34 21-55 5-38 (495)
282 PRK07774 short chain dehydroge 94.3 0.087 1.9E-06 35.6 4.2 37 17-54 3-40 (250)
283 PRK05786 fabG 3-ketoacyl-(acyl 94.3 0.087 1.9E-06 35.3 4.2 36 18-54 3-39 (238)
284 PF13450 NAD_binding_8: NAD(P) 94.3 0.12 2.6E-06 29.4 4.2 29 25-54 1-29 (68)
285 PRK09564 coenzyme A disulfide 94.3 0.1 2.2E-06 38.8 4.9 35 21-55 1-36 (444)
286 PRK05875 short chain dehydroge 94.3 0.068 1.5E-06 36.8 3.7 36 17-53 4-40 (276)
287 PRK07680 late competence prote 94.3 0.091 2E-06 37.0 4.4 33 22-54 2-37 (273)
288 TIGR01316 gltA glutamate synth 94.3 0.088 1.9E-06 39.7 4.6 34 19-53 132-165 (449)
289 PRK05257 malate:quinone oxidor 94.3 0.077 1.7E-06 40.9 4.3 35 20-54 5-40 (494)
290 cd01336 MDH_cytoplasmic_cytoso 94.3 0.076 1.7E-06 38.9 4.1 34 20-53 2-42 (325)
291 PRK07856 short chain dehydroge 94.3 0.094 2E-06 35.7 4.4 36 18-54 4-40 (252)
292 PRK09599 6-phosphogluconate de 94.3 0.089 1.9E-06 37.7 4.4 32 22-54 2-33 (301)
293 PRK08703 short chain dehydroge 94.2 0.06 1.3E-06 36.3 3.4 36 18-54 4-40 (239)
294 PRK07035 short chain dehydroge 94.2 0.093 2E-06 35.6 4.3 36 17-53 5-41 (252)
295 PRK12769 putative oxidoreducta 94.2 0.082 1.8E-06 41.7 4.5 34 19-53 326-359 (654)
296 TIGR03325 BphB_TodD cis-2,3-di 94.2 0.085 1.8E-06 36.2 4.1 35 18-53 3-38 (262)
297 PRK07634 pyrroline-5-carboxyla 94.2 0.093 2E-06 36.0 4.3 34 19-52 3-39 (245)
298 PRK05653 fabG 3-ketoacyl-(acyl 94.2 0.088 1.9E-06 35.1 4.1 36 18-54 3-39 (246)
299 PRK06487 glycerate dehydrogena 94.2 0.074 1.6E-06 38.7 3.9 36 16-52 144-179 (317)
300 COG2072 TrkA Predicted flavopr 94.2 0.096 2.1E-06 39.8 4.7 35 19-53 7-41 (443)
301 PF00743 FMO-like: Flavin-bind 94.2 0.079 1.7E-06 41.3 4.2 32 20-52 1-32 (531)
302 PRK08226 short chain dehydroge 94.2 0.082 1.8E-06 36.1 3.9 37 17-54 3-40 (263)
303 PRK07574 formate dehydrogenase 94.2 0.077 1.7E-06 39.9 4.1 38 16-54 188-225 (385)
304 cd05313 NAD_bind_2_Glu_DH NAD( 94.2 0.092 2E-06 37.6 4.3 35 17-51 35-69 (254)
305 PRK07060 short chain dehydroge 94.2 0.11 2.3E-06 35.0 4.4 35 18-53 7-42 (245)
306 PRK07478 short chain dehydroge 94.2 0.093 2E-06 35.7 4.2 35 18-53 4-39 (254)
307 PRK07063 short chain dehydroge 94.2 0.092 2E-06 35.9 4.2 36 17-53 4-40 (260)
308 PRK06949 short chain dehydroge 94.2 0.11 2.3E-06 35.3 4.4 35 18-53 7-42 (258)
309 PF00670 AdoHcyase_NAD: S-aden 94.2 0.084 1.8E-06 35.5 3.8 39 17-56 20-58 (162)
310 PF07992 Pyr_redox_2: Pyridine 94.2 0.099 2.2E-06 34.1 4.2 30 22-52 1-30 (201)
311 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.2 0.088 1.9E-06 40.8 4.4 33 20-53 5-37 (503)
312 PRK05866 short chain dehydroge 94.1 0.053 1.1E-06 38.4 3.0 38 15-53 35-73 (293)
313 KOG4169|consensus 94.1 0.061 1.3E-06 38.6 3.2 35 18-52 3-38 (261)
314 PRK11880 pyrroline-5-carboxyla 94.1 0.1 2.2E-06 36.4 4.3 34 21-54 3-38 (267)
315 PRK10015 oxidoreductase; Provi 94.1 0.097 2.1E-06 39.3 4.5 33 21-54 6-38 (429)
316 PRK08268 3-hydroxy-acyl-CoA de 94.1 0.091 2E-06 40.7 4.4 33 21-54 8-40 (507)
317 PRK08277 D-mannonate oxidoredu 94.1 0.1 2.2E-06 36.1 4.3 36 17-53 7-43 (278)
318 PRK12770 putative glutamate sy 94.1 0.1 2.2E-06 37.9 4.5 34 20-53 172-205 (352)
319 PRK08589 short chain dehydroge 94.1 0.064 1.4E-06 37.2 3.3 36 17-53 3-39 (272)
320 PRK09496 trkA potassium transp 94.1 0.1 2.3E-06 38.7 4.6 33 21-54 1-33 (453)
321 PRK06935 2-deoxy-D-gluconate 3 94.1 0.095 2.1E-06 35.8 4.1 36 17-53 12-48 (258)
322 TIGR01989 COQ6 Ubiquinone bios 94.1 0.077 1.7E-06 39.6 3.9 31 22-53 2-36 (437)
323 PRK07831 short chain dehydroge 94.1 0.1 2.2E-06 35.7 4.3 36 17-53 14-51 (262)
324 PRK07679 pyrroline-5-carboxyla 94.1 0.1 2.3E-06 36.8 4.4 34 20-53 3-39 (279)
325 PRK12746 short chain dehydroge 94.1 0.057 1.2E-06 36.6 3.0 34 16-50 2-36 (254)
326 PLN03139 formate dehydrogenase 94.1 0.078 1.7E-06 39.9 3.9 38 16-54 195-232 (386)
327 PRK06500 short chain dehydroge 94.1 0.098 2.1E-06 35.2 4.1 36 17-53 3-39 (249)
328 PRK08010 pyridine nucleotide-d 94.1 0.097 2.1E-06 39.0 4.4 33 20-53 3-35 (441)
329 PRK06124 gluconate 5-dehydroge 94.1 0.11 2.3E-06 35.4 4.3 37 17-54 8-45 (256)
330 PRK05717 oxidoreductase; Valid 94.0 0.11 2.4E-06 35.5 4.3 36 18-54 8-44 (255)
331 PRK12771 putative glutamate sy 94.0 0.099 2.2E-06 40.5 4.5 34 19-53 136-169 (564)
332 PRK03562 glutathione-regulated 94.0 0.11 2.3E-06 41.2 4.7 36 20-56 400-435 (621)
333 TIGR01505 tartro_sem_red 2-hyd 94.0 0.097 2.1E-06 37.1 4.1 32 22-54 1-32 (291)
334 PRK06172 short chain dehydroge 94.0 0.11 2.4E-06 35.2 4.3 35 18-53 5-40 (253)
335 PRK12814 putative NADPH-depend 94.0 0.11 2.3E-06 41.3 4.6 35 19-54 192-226 (652)
336 PRK11064 wecC UDP-N-acetyl-D-m 94.0 0.096 2.1E-06 39.4 4.2 40 20-60 3-42 (415)
337 PRK04148 hypothetical protein; 94.0 0.089 1.9E-06 34.3 3.5 35 19-55 16-50 (134)
338 PRK11559 garR tartronate semia 94.0 0.11 2.3E-06 36.8 4.3 33 21-54 3-35 (296)
339 PRK06196 oxidoreductase; Provi 93.9 0.15 3.2E-06 36.2 5.0 36 17-53 23-59 (315)
340 PTZ00431 pyrroline carboxylate 93.9 0.11 2.4E-06 36.5 4.3 35 19-53 2-39 (260)
341 PRK06398 aldose dehydrogenase; 93.9 0.076 1.7E-06 36.6 3.4 36 17-53 3-39 (258)
342 PRK06200 2,3-dihydroxy-2,3-dih 93.9 0.12 2.6E-06 35.4 4.3 35 18-53 4-39 (263)
343 PRK08410 2-hydroxyacid dehydro 93.9 0.096 2.1E-06 38.1 4.0 37 16-53 141-177 (311)
344 PRK12770 putative glutamate sy 93.9 0.12 2.7E-06 37.5 4.6 34 20-54 18-51 (352)
345 PRK06197 short chain dehydroge 93.9 0.088 1.9E-06 37.1 3.8 37 16-53 12-49 (306)
346 TIGR02622 CDP_4_6_dhtase CDP-g 93.9 0.12 2.6E-06 37.2 4.4 36 18-54 2-38 (349)
347 PRK09072 short chain dehydroge 93.9 0.11 2.4E-06 35.6 4.1 35 18-53 3-38 (263)
348 PRK05876 short chain dehydroge 93.9 0.082 1.8E-06 37.0 3.5 35 18-53 4-39 (275)
349 PRK07890 short chain dehydroge 93.8 0.13 2.9E-06 34.8 4.4 36 18-54 3-39 (258)
350 PRK06545 prephenate dehydrogen 93.8 0.11 2.4E-06 38.2 4.3 33 21-54 1-33 (359)
351 PRK07814 short chain dehydroge 93.8 0.13 2.9E-06 35.3 4.5 35 18-53 8-43 (263)
352 TIGR01202 bchC 2-desacetyl-2-h 93.8 0.14 3E-06 36.4 4.6 35 19-53 144-178 (308)
353 PRK08628 short chain dehydroge 93.8 0.12 2.6E-06 35.2 4.1 36 17-53 4-40 (258)
354 PRK06138 short chain dehydroge 93.8 0.12 2.7E-06 34.8 4.2 35 18-53 3-38 (252)
355 PRK06113 7-alpha-hydroxysteroi 93.8 0.12 2.6E-06 35.2 4.2 36 17-53 8-44 (255)
356 PRK03659 glutathione-regulated 93.8 0.13 2.8E-06 40.5 4.7 36 20-56 400-435 (601)
357 PRK12491 pyrroline-5-carboxyla 93.8 0.13 2.8E-06 36.6 4.4 35 20-54 2-39 (272)
358 PRK12779 putative bifunctional 93.7 0.11 2.3E-06 43.1 4.5 34 19-53 305-338 (944)
359 PTZ00367 squalene epoxidase; P 93.7 0.12 2.6E-06 40.6 4.6 34 20-54 33-66 (567)
360 PRK07024 short chain dehydroge 93.7 0.15 3.2E-06 34.9 4.5 33 20-53 2-35 (257)
361 COG2072 TrkA Predicted flavopr 93.7 0.091 2E-06 39.9 3.8 34 16-50 171-204 (443)
362 PRK07984 enoyl-(acyl carrier p 93.7 0.085 1.9E-06 36.8 3.4 36 17-53 3-41 (262)
363 COG0111 SerA Phosphoglycerate 93.7 0.11 2.5E-06 38.1 4.1 36 17-53 139-174 (324)
364 TIGR00872 gnd_rel 6-phosphoglu 93.7 0.13 2.7E-06 36.9 4.3 32 22-54 2-33 (298)
365 PRK10537 voltage-gated potassi 93.7 0.12 2.7E-06 38.9 4.4 37 19-56 239-275 (393)
366 PRK08339 short chain dehydroge 93.7 0.14 3E-06 35.5 4.3 35 18-53 6-41 (263)
367 PRK12490 6-phosphogluconate de 93.7 0.13 2.9E-06 36.8 4.4 32 22-54 2-33 (299)
368 PRK12810 gltD glutamate syntha 93.6 0.14 3E-06 38.9 4.6 34 19-53 142-175 (471)
369 TIGR03026 NDP-sugDHase nucleot 93.6 0.13 2.8E-06 38.4 4.4 38 22-60 2-39 (411)
370 PRK02472 murD UDP-N-acetylmura 93.6 0.12 2.5E-06 38.6 4.2 36 18-54 3-38 (447)
371 PRK06171 sorbitol-6-phosphate 93.6 0.13 2.8E-06 35.3 4.1 36 17-53 6-42 (266)
372 PRK09853 putative selenate red 93.6 0.12 2.6E-06 43.3 4.6 35 19-54 538-572 (1019)
373 COG1063 Tdh Threonine dehydrog 93.6 0.13 2.9E-06 37.6 4.4 35 21-55 170-204 (350)
374 TIGR03206 benzo_BadH 2-hydroxy 93.6 0.15 3.2E-06 34.4 4.3 36 18-54 1-37 (250)
375 PLN02477 glutamate dehydrogena 93.6 0.12 2.7E-06 39.2 4.3 37 17-53 203-239 (410)
376 PRK05565 fabG 3-ketoacyl-(acyl 93.6 0.11 2.4E-06 34.8 3.6 35 18-53 3-39 (247)
377 PRK15461 NADH-dependent gamma- 93.6 0.14 3E-06 36.7 4.3 33 21-54 2-34 (296)
378 PRK06932 glycerate dehydrogena 93.6 0.1 2.3E-06 37.9 3.7 36 16-52 143-178 (314)
379 PRK08085 gluconate 5-dehydroge 93.6 0.15 3.3E-06 34.7 4.3 35 18-53 7-42 (254)
380 PRK12429 3-hydroxybutyrate deh 93.5 0.14 3.1E-06 34.5 4.1 35 18-53 2-37 (258)
381 PRK08017 oxidoreductase; Provi 93.5 0.18 3.8E-06 34.2 4.6 32 21-53 3-35 (256)
382 PRK12831 putative oxidoreducta 93.5 0.14 3E-06 38.9 4.4 34 19-53 139-172 (464)
383 PRK06114 short chain dehydroge 93.5 0.12 2.6E-06 35.3 3.8 36 17-53 5-41 (254)
384 TIGR01350 lipoamide_DH dihydro 93.5 0.16 3.5E-06 37.9 4.7 34 21-55 2-35 (461)
385 PRK12939 short chain dehydroge 93.5 0.16 3.5E-06 34.1 4.3 35 18-53 5-40 (250)
386 PRK06125 short chain dehydroge 93.5 0.15 3.3E-06 34.8 4.2 36 18-54 5-41 (259)
387 PLN02572 UDP-sulfoquinovose sy 93.5 0.12 2.6E-06 39.0 4.0 36 16-52 43-79 (442)
388 PRK02705 murD UDP-N-acetylmura 93.5 0.14 3.1E-06 38.3 4.4 33 21-54 1-33 (459)
389 PTZ00383 malate:quinone oxidor 93.5 0.15 3.2E-06 39.5 4.6 34 20-53 45-79 (497)
390 PRK06940 short chain dehydroge 93.5 0.15 3.4E-06 35.5 4.3 32 20-53 2-33 (275)
391 PRK12825 fabG 3-ketoacyl-(acyl 93.4 0.14 3.1E-06 34.0 4.0 31 18-49 4-35 (249)
392 PRK09242 tropinone reductase; 93.4 0.16 3.5E-06 34.6 4.3 36 17-53 6-42 (257)
393 PRK08278 short chain dehydroge 93.4 0.16 3.6E-06 35.2 4.4 36 18-54 4-40 (273)
394 PRK00683 murD UDP-N-acetylmura 93.4 0.14 3E-06 38.2 4.3 35 19-54 2-36 (418)
395 cd05294 LDH-like_MDH_nadp A la 93.4 0.16 3.4E-06 36.8 4.4 33 21-53 1-35 (309)
396 PRK08605 D-lactate dehydrogena 93.4 0.12 2.6E-06 37.8 3.8 36 17-53 143-179 (332)
397 TIGR03315 Se_ygfK putative sel 93.4 0.14 3E-06 42.9 4.6 35 19-54 536-570 (1012)
398 PRK07533 enoyl-(acyl carrier p 93.4 0.12 2.7E-06 35.6 3.7 36 17-53 7-45 (258)
399 PRK11749 dihydropyrimidine deh 93.4 0.15 3.2E-06 38.4 4.3 34 19-53 139-172 (457)
400 PRK07233 hypothetical protein; 93.4 0.16 3.5E-06 37.0 4.5 32 22-54 1-32 (434)
401 PRK13394 3-hydroxybutyrate deh 93.3 0.17 3.8E-06 34.3 4.3 37 17-54 4-41 (262)
402 PRK07889 enoyl-(acyl carrier p 93.3 0.12 2.6E-06 35.7 3.6 36 17-53 4-42 (256)
403 PRK11790 D-3-phosphoglycerate 93.3 0.14 2.9E-06 38.7 4.1 37 16-53 147-183 (409)
404 PLN02852 ferredoxin-NADP+ redu 93.3 0.16 3.6E-06 39.3 4.6 36 19-55 25-62 (491)
405 PRK12827 short chain dehydroge 93.3 0.16 3.5E-06 34.0 4.1 34 18-52 4-38 (249)
406 PRK12748 3-ketoacyl-(acyl-carr 93.3 0.15 3.2E-06 34.9 3.9 35 18-53 3-40 (256)
407 PRK07251 pyridine nucleotide-d 93.3 0.16 3.4E-06 37.9 4.4 34 20-54 3-36 (438)
408 PRK08690 enoyl-(acyl carrier p 93.3 0.096 2.1E-06 36.3 3.0 35 16-51 2-39 (261)
409 PRK06924 short chain dehydroge 93.3 0.19 4E-06 34.0 4.4 33 21-54 2-35 (251)
410 PRK07825 short chain dehydroge 93.3 0.16 3.4E-06 35.0 4.1 35 18-53 3-38 (273)
411 PRK02006 murD UDP-N-acetylmura 93.3 0.15 3.3E-06 38.9 4.3 37 18-55 5-41 (498)
412 PRK06505 enoyl-(acyl carrier p 93.3 0.15 3.3E-06 35.6 4.1 34 18-52 5-41 (271)
413 PRK05867 short chain dehydroge 93.2 0.17 3.7E-06 34.4 4.2 35 18-53 7-42 (253)
414 PRK12859 3-ketoacyl-(acyl-carr 93.2 0.09 2E-06 36.1 2.8 35 16-51 2-39 (256)
415 PTZ00318 NADH dehydrogenase-li 93.2 0.11 2.3E-06 38.9 3.4 37 17-54 7-43 (424)
416 PRK08642 fabG 3-ketoacyl-(acyl 93.2 0.14 3E-06 34.6 3.7 33 18-51 3-36 (253)
417 TIGR03219 salicylate_mono sali 93.2 0.18 4E-06 37.1 4.6 33 21-53 1-33 (414)
418 PRK12936 3-ketoacyl-(acyl-carr 93.2 0.19 4.2E-06 33.6 4.3 34 18-52 4-38 (245)
419 PRK05872 short chain dehydroge 93.2 0.19 4.2E-06 35.4 4.5 36 17-53 6-42 (296)
420 PF03435 Saccharop_dh: Sacchar 93.2 0.14 3E-06 37.6 3.9 38 23-60 1-39 (386)
421 PLN02927 antheraxanthin epoxid 93.2 0.16 3.5E-06 40.8 4.5 37 17-54 78-114 (668)
422 PRK12439 NAD(P)H-dependent gly 93.2 0.19 4E-06 36.8 4.5 32 20-53 7-38 (341)
423 PRK06079 enoyl-(acyl carrier p 93.2 0.16 3.5E-06 34.9 4.0 36 17-53 4-42 (252)
424 PRK08177 short chain dehydroge 93.2 0.21 4.5E-06 33.5 4.5 34 21-55 2-36 (225)
425 PRK06292 dihydrolipoamide dehy 93.2 0.18 3.9E-06 37.7 4.5 35 20-55 3-37 (460)
426 TIGR01318 gltD_gamma_fam gluta 93.2 0.17 3.8E-06 38.4 4.5 34 19-53 140-173 (467)
427 PLN02688 pyrroline-5-carboxyla 93.1 0.2 4.2E-06 34.9 4.4 32 21-52 1-36 (266)
428 PRK11883 protoporphyrinogen ox 93.1 0.21 4.6E-06 36.7 4.8 32 21-52 1-33 (451)
429 PRK07251 pyridine nucleotide-d 93.1 0.2 4.3E-06 37.4 4.7 33 20-53 157-189 (438)
430 PLN02240 UDP-glucose 4-epimera 93.1 0.17 3.7E-06 36.0 4.2 34 18-52 3-37 (352)
431 PRK07453 protochlorophyllide o 93.1 0.2 4.2E-06 35.7 4.5 35 18-53 4-39 (322)
432 PRK07791 short chain dehydroge 93.1 0.12 2.7E-06 36.3 3.4 36 17-53 3-39 (286)
433 PLN02697 lycopene epsilon cycl 93.1 0.18 4E-06 39.3 4.6 32 21-53 109-140 (529)
434 PRK09186 flagellin modificatio 93.1 0.19 4.1E-06 34.0 4.2 35 18-53 2-37 (256)
435 PRK05557 fabG 3-ketoacyl-(acyl 93.1 0.18 3.9E-06 33.6 4.1 32 18-50 3-35 (248)
436 PRK05192 tRNA uridine 5-carbox 93.1 0.16 3.6E-06 40.5 4.3 33 20-53 4-36 (618)
437 PRK07326 short chain dehydroge 93.1 0.2 4.3E-06 33.5 4.2 35 18-53 4-39 (237)
438 PRK13581 D-3-phosphoglycerate 93.1 0.14 3.1E-06 39.7 4.0 35 17-52 137-171 (526)
439 PRK12809 putative oxidoreducta 93.0 0.18 3.9E-06 39.8 4.6 35 19-54 309-343 (639)
440 PRK06912 acoL dihydrolipoamide 93.0 0.26 5.7E-06 37.1 5.3 34 22-56 2-35 (458)
441 PF02629 CoA_binding: CoA bind 93.0 0.17 3.6E-06 30.5 3.5 36 19-54 2-38 (96)
442 PRK09754 phenylpropionate diox 93.0 0.2 4.3E-06 36.9 4.5 32 20-52 144-175 (396)
443 PRK06928 pyrroline-5-carboxyla 93.0 0.21 4.6E-06 35.4 4.5 34 21-54 2-38 (277)
444 PRK08159 enoyl-(acyl carrier p 93.0 0.19 4.1E-06 35.1 4.2 36 16-52 6-44 (272)
445 PRK09880 L-idonate 5-dehydroge 93.0 0.23 5E-06 35.6 4.7 34 19-52 169-202 (343)
446 PRK05976 dihydrolipoamide dehy 92.9 0.21 4.6E-06 37.7 4.6 35 20-55 4-38 (472)
447 PF13454 NAD_binding_9: FAD-NA 92.9 0.18 4E-06 32.7 3.8 32 24-55 1-36 (156)
448 PRK08251 short chain dehydroge 92.9 0.24 5.3E-06 33.4 4.5 34 20-54 2-36 (248)
449 PRK14694 putative mercuric red 92.9 0.23 4.9E-06 37.5 4.7 36 19-55 5-40 (468)
450 TIGR03385 CoA_CoA_reduc CoA-di 92.9 0.31 6.8E-06 36.1 5.4 34 19-53 136-169 (427)
451 PRK01390 murD UDP-N-acetylmura 92.8 0.14 3E-06 38.6 3.5 36 17-53 6-41 (460)
452 PRK06701 short chain dehydroge 92.8 0.19 4.2E-06 35.4 4.1 37 16-53 42-79 (290)
453 PRK08643 acetoin reductase; Va 92.8 0.25 5.3E-06 33.6 4.5 33 20-53 2-35 (256)
454 PRK04308 murD UDP-N-acetylmura 92.8 0.21 4.5E-06 37.5 4.4 37 18-55 3-39 (445)
455 PRK15059 tartronate semialdehy 92.8 0.22 4.9E-06 35.7 4.5 32 22-54 2-33 (292)
456 PRK01710 murD UDP-N-acetylmura 92.8 0.26 5.6E-06 37.3 4.9 38 16-54 10-47 (458)
457 TIGR01317 GOGAT_sm_gam glutama 92.8 0.21 4.5E-06 38.2 4.5 34 20-54 143-176 (485)
458 PRK04965 NADH:flavorubredoxin 92.8 0.23 5E-06 36.3 4.6 34 19-53 140-173 (377)
459 PRK09897 hypothetical protein; 92.8 0.21 4.6E-06 39.0 4.6 33 21-53 2-35 (534)
460 TIGR01421 gluta_reduc_1 glutat 92.8 0.25 5.4E-06 37.3 4.8 37 20-57 2-38 (450)
461 PRK11445 putative oxidoreducta 92.8 0.2 4.2E-06 36.4 4.1 32 21-54 2-33 (351)
462 PRK05249 soluble pyridine nucl 92.8 0.18 3.8E-06 37.8 4.0 33 20-53 5-37 (461)
463 PRK13512 coenzyme A disulfide 92.8 0.28 6.1E-06 36.7 5.1 33 20-53 148-180 (438)
464 PRK06720 hypothetical protein; 92.7 0.25 5.4E-06 32.8 4.3 36 17-53 13-49 (169)
465 PRK12384 sorbitol-6-phosphate 92.7 0.25 5.5E-06 33.6 4.4 34 20-54 2-36 (259)
466 PRK07677 short chain dehydroge 92.7 0.26 5.7E-06 33.5 4.5 33 21-54 2-35 (252)
467 TIGR01327 PGDH D-3-phosphoglyc 92.7 0.18 3.8E-06 39.2 4.0 35 17-52 135-169 (525)
468 PRK06997 enoyl-(acyl carrier p 92.7 0.14 3.1E-06 35.4 3.2 35 16-51 2-39 (260)
469 PRK08220 2,3-dihydroxybenzoate 92.7 0.24 5.1E-06 33.5 4.2 36 18-54 6-42 (252)
470 PRK08415 enoyl-(acyl carrier p 92.7 0.23 5.1E-06 34.8 4.3 35 18-53 3-40 (274)
471 PRK06115 dihydrolipoamide dehy 92.7 0.23 5E-06 37.6 4.5 32 20-52 174-205 (466)
472 PRK08993 2-deoxy-D-gluconate 3 92.7 0.2 4.4E-06 34.2 3.9 34 18-52 8-42 (253)
473 PRK06476 pyrroline-5-carboxyla 92.7 0.23 4.9E-06 34.7 4.2 32 22-53 2-35 (258)
474 PRK10262 thioredoxin reductase 92.7 0.25 5.4E-06 35.2 4.5 33 19-52 5-37 (321)
475 TIGR01320 mal_quin_oxido malat 92.6 0.22 4.8E-06 38.2 4.5 31 22-53 2-34 (483)
476 PRK12742 oxidoreductase; Provi 92.6 0.13 2.8E-06 34.4 2.9 34 17-51 3-37 (237)
477 PRK06370 mercuric reductase; V 92.6 0.28 6E-06 36.9 4.9 40 20-60 5-44 (463)
478 PLN02712 arogenate dehydrogena 92.6 0.21 4.5E-06 40.0 4.4 37 17-54 366-402 (667)
479 PRK05976 dihydrolipoamide dehy 92.6 0.23 5E-06 37.5 4.4 33 20-53 180-212 (472)
480 PRK07102 short chain dehydroge 92.6 0.27 5.9E-06 33.2 4.4 33 21-54 2-35 (243)
481 PRK06128 oxidoreductase; Provi 92.5 0.23 4.9E-06 35.1 4.1 35 16-51 51-86 (300)
482 PRK07097 gluconate 5-dehydroge 92.5 0.24 5.1E-06 34.0 4.1 36 17-53 7-43 (265)
483 PRK11199 tyrA bifunctional cho 92.5 0.21 4.5E-06 37.1 4.1 33 21-54 99-132 (374)
484 PRK07577 short chain dehydroge 92.5 0.26 5.7E-06 32.9 4.3 35 19-54 2-37 (234)
485 PRK07062 short chain dehydroge 92.5 0.27 5.9E-06 33.6 4.4 35 18-53 6-41 (265)
486 PRK11730 fadB multifunctional 92.5 0.21 4.6E-06 40.1 4.4 33 21-54 314-346 (715)
487 PRK05854 short chain dehydroge 92.5 0.25 5.5E-06 35.2 4.4 36 17-53 11-47 (313)
488 PF13478 XdhC_C: XdhC Rossmann 92.5 0.19 4.1E-06 32.6 3.4 31 23-54 1-31 (136)
489 PRK12778 putative bifunctional 92.5 0.23 4.9E-06 39.9 4.5 34 19-53 430-463 (752)
490 TIGR03570 NeuD_NnaD sugar O-ac 92.5 0.27 5.8E-06 32.1 4.2 34 22-55 1-34 (201)
491 PRK12938 acetyacetyl-CoA reduc 92.5 0.23 4.9E-06 33.5 3.9 30 19-49 2-32 (246)
492 PRK04690 murD UDP-N-acetylmura 92.5 0.24 5.2E-06 37.7 4.4 37 18-55 6-42 (468)
493 PRK14031 glutamate dehydrogena 92.5 0.22 4.8E-06 38.3 4.2 35 17-51 225-259 (444)
494 PRK05993 short chain dehydroge 92.5 0.27 5.9E-06 34.2 4.4 33 20-53 4-37 (277)
495 PRK11749 dihydropyrimidine deh 92.4 0.26 5.6E-06 37.1 4.5 34 19-52 272-305 (457)
496 PF01262 AlaDh_PNT_C: Alanine 92.4 0.25 5.5E-06 32.5 4.0 38 17-55 17-54 (168)
497 PRK07208 hypothetical protein; 92.4 0.27 5.8E-06 36.9 4.6 33 19-52 3-35 (479)
498 PF03721 UDPG_MGDP_dh_N: UDP-g 92.4 0.23 5.1E-06 33.5 3.9 39 21-60 1-39 (185)
499 KOG0069|consensus 92.4 0.16 3.4E-06 37.9 3.2 33 16-49 158-190 (336)
500 PLN02306 hydroxypyruvate reduc 92.4 0.2 4.3E-06 37.7 3.8 36 17-53 162-198 (386)
No 1
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=99.92 E-value=8e-26 Score=154.41 Aligned_cols=74 Identities=51% Similarity=0.773 Sum_probs=71.4
Q ss_pred CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
.++.++|++|++++|+|+|+||+|+|++|||+++||++|+++|+|.|+++|+ +||||++++|+|++|+++++++
T Consensus 10 l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL-~rqfl~~~~diG~~Ka~a~~~~ 83 (197)
T cd01492 10 LWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDL-GAQFLIPAEDLGQNRAEASLER 83 (197)
T ss_pred HhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhC-CCCccccHHHcCchHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999 9999999999999999998764
No 2
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=99.92 E-value=1.7e-25 Score=157.00 Aligned_cols=77 Identities=22% Similarity=0.411 Sum_probs=73.7
Q ss_pred ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
.+|.++.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|+ +||++++++|+|++|+++++++
T Consensus 18 ~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~dvG~~Ka~~a~~~ 94 (245)
T PRK05690 18 ILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNL-QRQVLHDDATIGQPKVESARAA 94 (245)
T ss_pred cchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchh-hhhhcCChhhCCChHHHHHHHH
Confidence 3588999999999999999999999999999999999999999999999999999 9999999999999999998764
No 3
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=99.92 E-value=2.2e-25 Score=154.46 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=72.9
Q ss_pred cCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 7 TSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 7 ~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
++.++.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|+ +||||+.++|+|++|+++++++
T Consensus 8 l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~Ka~~~~~~ 83 (228)
T cd00757 8 LPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNL-QRQILHTEADVGQPKAEAAAER 83 (228)
T ss_pred hhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCccc-ccccccChhhCCChHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999 9999999999999999998764
No 4
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=99.91 E-value=2.7e-25 Score=159.49 Aligned_cols=80 Identities=38% Similarity=0.537 Sum_probs=74.2
Q ss_pred ccccccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhccc
Q psy9593 2 FSAIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPT 81 (84)
Q Consensus 2 ~~~~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~ 81 (84)
||+- ...+|.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.++.+|| +||||++++|+|++||++++
T Consensus 2 YsRQ-l~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL-~rqf~~~~~dIGk~Kaea~~ 79 (286)
T cd01491 2 YSRQ-LYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDL-SSQFYLREEDIGKNRAEASQ 79 (286)
T ss_pred cccc-eeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhc-ccCccCChHHhCHHHHHHHH
Confidence 3443 456899999999999999999999999999999999999999999999999999 99999999999999999987
Q ss_pred CC
Q psy9593 82 SR 83 (84)
Q Consensus 82 ~r 83 (84)
++
T Consensus 80 ~~ 81 (286)
T cd01491 80 AR 81 (286)
T ss_pred HH
Confidence 64
No 5
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=99.91 E-value=2.6e-25 Score=152.08 Aligned_cols=77 Identities=25% Similarity=0.391 Sum_probs=73.8
Q ss_pred ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
.++.++.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|+ +|||+|+++|+|++|+++++++
T Consensus 7 ~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL-~Rq~l~~~~diG~~Ka~~~~~~ 83 (202)
T TIGR02356 7 LLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNL-QRQILFTEEDVGRPKVEVAAQR 83 (202)
T ss_pred cchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccch-hhhhccChhhCCChHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999 9999999999999999998764
No 6
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=99.91 E-value=5.3e-25 Score=150.35 Aligned_cols=74 Identities=32% Similarity=0.506 Sum_probs=70.6
Q ss_pred CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccC--CccCchhhhcccCC
Q psy9593 9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPH--EDIGKNGLKPPTSR 83 (84)
Q Consensus 9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~--~diGk~ka~~~~~r 83 (84)
.++.++|++|++++|+|+|+||+|+|++|||+++||++|+++|+|.++++|+ +||||+++ +|+|++|+++++++
T Consensus 8 l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl-~rq~~~~~~~~~iG~~Ka~~~~~~ 83 (198)
T cd01485 8 LWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDL-GSNFFLDAEVSNSGMNRAAASYEF 83 (198)
T ss_pred ccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcC-cccEecccchhhcCchHHHHHHHH
Confidence 3889999999999999999999999999999999999999999999999999 99999998 89999999988754
No 7
>PRK07411 hypothetical protein; Validated
Probab=99.91 E-value=4.1e-25 Score=163.58 Aligned_cols=78 Identities=24% Similarity=0.404 Sum_probs=74.7
Q ss_pred cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
+.+|+++.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|| +|||+++++|+|++|+++++++
T Consensus 23 ~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL-~RQ~l~~~~dvG~~Ka~~a~~~ 100 (390)
T PRK07411 23 LILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNL-QRQVIHGTSWVGKPKIESAKNR 100 (390)
T ss_pred echhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEeccccc-CcCcccChHHCCCcHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999 9999999999999999998764
No 8
>PRK08223 hypothetical protein; Validated
Probab=99.91 E-value=6.7e-25 Score=157.56 Aligned_cols=75 Identities=19% Similarity=0.199 Sum_probs=71.7
Q ss_pred CCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 8 ~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
...+.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|+ +||++++++|+|++|+++++++
T Consensus 15 ~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNL-nRQ~l~~~~diG~~Kve~a~~~ 89 (287)
T PRK08223 15 GWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNF-NRQAGAMMSTLGRPKAEVLAEM 89 (287)
T ss_pred hhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhcc-ccccCcChhHCCCcHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999 9999999999999999998765
No 9
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=99.91 E-value=7.5e-25 Score=153.54 Aligned_cols=78 Identities=24% Similarity=0.437 Sum_probs=74.1
Q ss_pred cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
+.++..+.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|| +||++++++|+|++|+++++++
T Consensus 9 ~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~RQ~l~~~~diG~~Ka~~a~~~ 86 (240)
T TIGR02355 9 IILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNL-QRQVLHSDANIGQPKVESAKDA 86 (240)
T ss_pred eecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCc-ccceeeeHhhCCCcHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999 9999999999999999998764
No 10
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.91 E-value=1.1e-24 Score=159.72 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=74.6
Q ss_pred cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
+.+|.++.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|| +|||+++++|+|++|+++++++
T Consensus 13 ~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~Ka~~a~~~ 90 (355)
T PRK05597 13 IMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNL-HRQVIHSTAGVGQPKAESAREA 90 (355)
T ss_pred echhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEccccc-ccCcccChhHCCChHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999 9999999999999999998764
No 11
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.90 E-value=1.3e-24 Score=160.78 Aligned_cols=77 Identities=21% Similarity=0.404 Sum_probs=73.8
Q ss_pred ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
.+|+++.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|| +|||+++++|+|++|+++++++
T Consensus 28 ~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~Ka~~a~~~ 104 (392)
T PRK07878 28 IIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNL-QRQVIHGQSDVGRSKAQSARDS 104 (392)
T ss_pred chhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCccc-ccccccChhcCCChHHHHHHHH
Confidence 4588999999999999999999999999999999999999999999999999999 9999999999999999998764
No 12
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.90 E-value=3.5e-24 Score=149.80 Aligned_cols=73 Identities=26% Similarity=0.333 Sum_probs=70.2
Q ss_pred CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
.|.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++|+ +||+++..+|+|++|++++++|
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNl-nRq~~~~~~diG~~Kae~~~~~ 73 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNL-NRQIHALLSTVGKPKVEVMAER 73 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhh-cchhCcChhhCCCcHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999 9999999999999999998775
No 13
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.89 E-value=8.5e-24 Score=155.89 Aligned_cols=78 Identities=23% Similarity=0.439 Sum_probs=74.5
Q ss_pred cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
+.+|.++.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|| +||++|+++|+|++|+++++++
T Consensus 26 i~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL-~RQ~l~~~~diG~~Ka~~~~~~ 103 (370)
T PRK05600 26 LALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNI-HRQILFGASDVGRPKVEVAAER 103 (370)
T ss_pred cchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccc-cccccCChhHCCCHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999 9999999999999999998765
No 14
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.89 E-value=1.2e-23 Score=145.12 Aligned_cols=80 Identities=25% Similarity=0.366 Sum_probs=74.2
Q ss_pred ccccccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhccc
Q psy9593 2 FSAIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPT 81 (84)
Q Consensus 2 ~~~~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~ 81 (84)
|++.+.+..+.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|+ +||+|+ ++|+|++|+++++
T Consensus 10 ~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~~~-~~dvG~~Ka~~a~ 87 (212)
T PRK08644 10 FEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNL-NRQQYF-ISQIGMPKVEALK 87 (212)
T ss_pred HHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccc-cccEee-hhhCCChHHHHHH
Confidence 45567788999999999999999999999999999999999999999999999999999 999876 7899999999887
Q ss_pred CC
Q psy9593 82 SR 83 (84)
Q Consensus 82 ~r 83 (84)
++
T Consensus 88 ~~ 89 (212)
T PRK08644 88 EN 89 (212)
T ss_pred HH
Confidence 54
No 15
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.88 E-value=2.1e-23 Score=148.30 Aligned_cols=72 Identities=33% Similarity=0.452 Sum_probs=68.8
Q ss_pred CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
++.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+|| +||||+++ ++|++|+++++++
T Consensus 16 wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL-~RQfl~~~-dvGk~KAeaAa~~ 87 (287)
T PTZ00245 16 WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADV-CTNYLMQG-EAGGTRGARALGA 87 (287)
T ss_pred hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhh-cccccccc-ccCCcHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999 99999997 6899999988654
No 16
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.88 E-value=2.3e-23 Score=155.99 Aligned_cols=74 Identities=24% Similarity=0.373 Sum_probs=71.1
Q ss_pred CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
.+|.++|++|++++|||+|+||+|+|++|||+++|||+|+|+|++.|+++|+ ++|||++.+|+|++||++++++
T Consensus 9 LwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL-~~nFfl~~~diGk~kA~~~~~~ 82 (425)
T cd01493 9 LWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDL-GNNFFLDASSLGKSRAEATCEL 82 (425)
T ss_pred HhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhc-cccccCChhhcCcHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999 9999999999999999998754
No 17
>PRK08328 hypothetical protein; Provisional
Probab=99.87 E-value=8.5e-23 Score=142.24 Aligned_cols=72 Identities=25% Similarity=0.356 Sum_probs=68.4
Q ss_pred CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCc-hhhhcccC
Q psy9593 10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK-NGLKPPTS 82 (84)
Q Consensus 10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk-~ka~~~~~ 82 (84)
++.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+.+|+ +||+++.++|+|+ +|++++++
T Consensus 17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~dvG~~~k~~~a~~ 89 (231)
T PRK08328 17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNL-NRQILHWEEDLGKNPKPLSAKW 89 (231)
T ss_pred cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhh-ccccccChhhcCchHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999 9999999999999 58887654
No 18
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.87 E-value=7e-23 Score=149.54 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=72.6
Q ss_pred ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccC--chhhhcccCC
Q psy9593 6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG--KNGLKPPTSR 83 (84)
Q Consensus 6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diG--k~ka~~~~~r 83 (84)
..|.++.++|++|++++|+|+|+|++|++++++|+++|+++|+|+|+|.|+.+|| +||++|+++|+| ++||++++++
T Consensus 10 ~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL-~RQ~l~~~~d~~~g~~Ka~aa~~~ 88 (338)
T PRK12475 10 LFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNL-QRQQLYTEEDAKQKKPKAIAAKEH 88 (338)
T ss_pred chhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccccccc-CccccccHHHccCCccHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999 999999999985 8999988764
No 19
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.87 E-value=8.2e-23 Score=149.22 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=72.6
Q ss_pred ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccC--chhhhcccCC
Q psy9593 6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG--KNGLKPPTSR 83 (84)
Q Consensus 6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diG--k~ka~~~~~r 83 (84)
+.|.++.++|++|++++|+|+|+||+|++++++|+++|+++|+|+|+|.|+.+|| +||++++++|+| ++|+++++++
T Consensus 10 ~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL-~RQ~l~~~~dig~g~~Ka~aa~~~ 88 (339)
T PRK07688 10 LFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNL-QRQQLYTESDVKNNLPKAVAAKKR 88 (339)
T ss_pred chhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHc-CccccccHHHhcCCCcHHHHHHHH
Confidence 4588999999999999999999999999999999999999999999999999999 999999999995 5999987654
No 20
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.87 E-value=9.2e-23 Score=145.36 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=71.6
Q ss_pred CCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 8 ~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
..++.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.++++|+ +||+++..+++|++|++++++|
T Consensus 18 ~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNl-nRQ~~~~~~~vG~~Kve~~~~r 92 (268)
T PRK15116 18 RLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNT-NRQIHALRDNVGLAKAEVMAER 92 (268)
T ss_pred HHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccc-ccccccChhhcChHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999 9999998999999999998875
No 21
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.86 E-value=3.3e-22 Score=128.48 Aligned_cols=64 Identities=41% Similarity=0.713 Sum_probs=58.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
+++||+|+|+|++|++++++|+++|+++|+|+|+|.|+++|+ +||++++.+|+|++|+++++++
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl-~r~~~~~~~~vG~~Ka~~~~~~ 64 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNL-NRQFLYTEEDVGKNKAEAAKER 64 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGC-CTCTTS-GGGTTSBHHHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeeccc-ccccccccccchhHHHHHHHHH
Confidence 578999999999999999999999999999999999999999 9999999999999999998764
No 22
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.86 E-value=2.8e-22 Score=147.42 Aligned_cols=77 Identities=25% Similarity=0.404 Sum_probs=73.4
Q ss_pred ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
.+|..+.++|++|++++|+|+|+||+|++++++|+++|+++|+++|+|.|+++|+ +||++++++|+|++|+++++++
T Consensus 121 ~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl-~Rq~l~~~~diG~~Ka~~~~~~ 197 (376)
T PRK08762 121 RLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNL-QRQILHTEDRVGQPKVDSAAQR 197 (376)
T ss_pred chhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhh-ccccccchhhCCCcHHHHHHHH
Confidence 3577899999999999999999999999999999999999999999999999999 9999999999999999998764
No 23
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.86 E-value=1.9e-22 Score=145.19 Aligned_cols=61 Identities=34% Similarity=0.596 Sum_probs=59.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
||+|+|+||+|+|++|+|+++|+++|+|+|+|.|+.+|| +||||++++|+|++||++++++
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNL-nRQfLf~~~dIGk~KAevaa~~ 61 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNL-NRQFLFREKDIGKPKAEVAAKF 61 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccc-CcCcccChHHcchHHHHHHHHH
Confidence 699999999999999999999999999999999999999 9999999999999999998764
No 24
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.86 E-value=2.2e-22 Score=140.94 Aligned_cols=61 Identities=30% Similarity=0.560 Sum_probs=58.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
||+|+|+||+|+|++|+|+++|+++|+++|+|.|+++|| +|||||+++|+|++|+++++++
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNL-nRQflf~~~dvGk~Ka~va~~~ 61 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNL-NRQFLFRPKDIGRPKSEVAAEA 61 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhh-ccccCCChhhCChHHHHHHHHH
Confidence 699999999999999999999999999999999999999 9999999999999999998764
No 25
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.86 E-value=5.4e-22 Score=138.96 Aligned_cols=77 Identities=26% Similarity=0.433 Sum_probs=73.0
Q ss_pred cccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593 5 IITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS 82 (84)
Q Consensus 5 ~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~ 82 (84)
++++..+.++|++|+.++|+++|+||+|++++++|+++|+++++++|+|.|+.+|| +||++++++|+|++|++++++
T Consensus 15 i~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL-~rq~~~~~~dig~~Ka~~a~~ 91 (254)
T COG0476 15 ILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNL-QRQFLFTEADVGKPKAEVAAK 91 (254)
T ss_pred eeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCccccccc-CceeeecccccCCcHHHHHHH
Confidence 45677888889999999999999999999999999999999999999999999999 999999999999999998873
No 26
>PRK14851 hypothetical protein; Provisional
Probab=99.85 E-value=5.4e-22 Score=155.27 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=70.6
Q ss_pred CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
++.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++|| |||++++.+|+|++|+++++++
T Consensus 33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNL-NRQ~~~~~~dvG~~Kv~v~~~~ 105 (679)
T PRK14851 33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNV-NRQFGARVPSFGRPKLAVMKEQ 105 (679)
T ss_pred cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEeccccc-ccCcCcChhhCCCHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999 9999999999999999998764
No 27
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.85 E-value=4.6e-22 Score=160.60 Aligned_cols=74 Identities=30% Similarity=0.500 Sum_probs=71.5
Q ss_pred CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
.+|.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+|| +||||++++|+|++||++++++
T Consensus 13 l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL-~rQf~~~~~dIGk~Kaea~~~~ 86 (1008)
T TIGR01408 13 VLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDL-SSNFFLSEDDVGRNRAEAVVKK 86 (1008)
T ss_pred hcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhC-CCceecchHHcCchHHHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999 9999999999999999998765
No 28
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.85 E-value=5.3e-22 Score=160.23 Aligned_cols=74 Identities=27% Similarity=0.425 Sum_probs=70.6
Q ss_pred CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCC-----CcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGV-----KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv-----~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
.+|.++|++|++++|+|+|+||+|||++|||+++|+ |+|+|+|+|.|+.+|| +|||||+.+|||++|+++++++
T Consensus 408 l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNL-nRQfLf~~~dIGk~Ka~vaa~~ 486 (1008)
T TIGR01408 408 VFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNL-NRQFLFRPHHIGKPKSYTAADA 486 (1008)
T ss_pred HcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEeccccc-CcCcCCChhHcCcHHHHHHHHH
Confidence 367899999999999999999999999999999999 8999999999999999 9999999999999999998764
No 29
>PRK14852 hypothetical protein; Provisional
Probab=99.85 E-value=1.1e-21 Score=157.59 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=72.0
Q ss_pred CCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 8 ~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
..++.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|| ||||+++.+|+|++|+++++++
T Consensus 320 ~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNL-NRQ~l~~~~dIG~~Kaevaa~~ 394 (989)
T PRK14852 320 GLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNL-NRQYGASIASFGRGKLDVMTER 394 (989)
T ss_pred hhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEeccccc-ccccCCChhhCCChHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999 9999999999999999998865
No 30
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.85 E-value=7.6e-22 Score=143.13 Aligned_cols=61 Identities=26% Similarity=0.582 Sum_probs=59.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
||+|+|+||+|+|++|||+++|+++|+|+|+|.|+.+|| +|||+++++|+|++||++++++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNL-nRQflf~~~dVGk~Kaevaa~~ 61 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNL-NRQFLFRKKHVGKSKAQVAKEA 61 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhc-CcCccCChhHcCcHHHHHHHHH
Confidence 699999999999999999999999999999999999999 9999999999999999998764
No 31
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.84 E-value=1e-21 Score=134.58 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=72.3
Q ss_pred ccccccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhccc
Q psy9593 2 FSAIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPT 81 (84)
Q Consensus 2 ~~~~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~ 81 (84)
|...+....+.++|++|++++|+|+|+|++|++++++|+++|+++++++|+|.|+++|| +||+| ..+++|++|+++++
T Consensus 3 ~~~~~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~~-~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 3 FRRALVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNL-NRQQY-KASQVGEPKTEALK 80 (200)
T ss_pred HHHHHHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccc-ccccC-ChhhCCCHHHHHHH
Confidence 44556677889999999999999999999999999999999999999999999999999 99974 66899999999876
Q ss_pred CC
Q psy9593 82 SR 83 (84)
Q Consensus 82 ~r 83 (84)
++
T Consensus 81 ~~ 82 (200)
T TIGR02354 81 EN 82 (200)
T ss_pred HH
Confidence 53
No 32
>KOG2015|consensus
Probab=99.84 E-value=1.6e-21 Score=142.40 Aligned_cols=74 Identities=28% Similarity=0.445 Sum_probs=69.7
Q ss_pred CCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593 8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS 82 (84)
Q Consensus 8 ~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~ 82 (84)
++.+.|..+.+.+.+|+|+|+||+|||++|||+++|.+.++++|.|+++.+|| ||||+|++.|+|++||+++++
T Consensus 28 f~~~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNL-NRQFLF~~~DiG~pKAqvAA~ 101 (422)
T KOG2015|consen 28 FEPSEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNL-NRQFLFRESDIGEPKAQVAAE 101 (422)
T ss_pred CCCCHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccc-hhhhcccccccCchhHHHHHH
Confidence 34557888899999999999999999999999999999999999999999999 999999999999999999875
No 33
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.83 E-value=4.7e-21 Score=123.84 Aligned_cols=61 Identities=39% Similarity=0.637 Sum_probs=58.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
+|+|+|+|++|++++++|+++|+++|+++|+|.++++|+ +||+|++++|+|++|+++++++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl-~r~~~~~~~~vG~~Ka~~~~~~ 61 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNL-NRQFLARQADIGKPKAEVAARR 61 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchh-hccccCChhHCCChHHHHHHHH
Confidence 689999999999999999999999999999999999999 9999999999999999998764
No 34
>KOG2013|consensus
Probab=99.82 E-value=8.2e-21 Score=143.71 Aligned_cols=71 Identities=21% Similarity=0.480 Sum_probs=66.9
Q ss_pred cHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593 11 ILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS 82 (84)
Q Consensus 11 ~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~ 82 (84)
..+-++.+..+|||+|||||+|||++|+|++.|+++|+|+|.|+|+.+|| ||||||+.++||++||.++++
T Consensus 3 ~~~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNL-NRQFLFrkkhVgqsKA~vA~~ 73 (603)
T KOG2013|consen 3 PREKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNL-NRQFLFRKKHVGQSKATVAAK 73 (603)
T ss_pred hHHHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccch-hhhheeehhhcCchHHHHHHH
Confidence 35667888999999999999999999999999999999999999999999 999999999999999988764
No 35
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.82 E-value=9.2e-21 Score=147.38 Aligned_cols=76 Identities=25% Similarity=0.395 Sum_probs=70.6
Q ss_pred ccccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCcc---Cchhhhcc
Q psy9593 4 AIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI---GKNGLKPP 80 (84)
Q Consensus 4 ~~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~di---Gk~ka~~~ 80 (84)
|-++|+.+. ++|++++|+|+|+||+||+++++|+.+||++|+++|+|.|+.+|+ +||++|+.+|+ |++||+++
T Consensus 325 WRllP~l~~---ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL-~RQ~Lf~~~Dv~~~Gk~KA~aA 400 (664)
T TIGR01381 325 WRLHPDLQL---ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNP-VRQSLSNFEDCLLGGRGKAETA 400 (664)
T ss_pred hhcCChhhH---HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcc-ccccccchhhhhhcCCcHHHHH
Confidence 446677765 899999999999999999999999999999999999999999999 99999999999 99999998
Q ss_pred cCC
Q psy9593 81 TSR 83 (84)
Q Consensus 81 ~~r 83 (84)
+++
T Consensus 401 a~~ 403 (664)
T TIGR01381 401 QKA 403 (664)
T ss_pred HHH
Confidence 764
No 36
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.81 E-value=1.1e-20 Score=142.08 Aligned_cols=61 Identities=30% Similarity=0.519 Sum_probs=58.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC-----CcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGV-----KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv-----~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
+|+|+|+||+|||++|||+++|+ |+|+++|+|.|+.+|| +|||+++++|||++|+++++++
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNL-nRQfLf~~~dIGk~Ka~vAa~~ 66 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNL-NRQFLFRPHDVGKPKSEVAAAA 66 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCcccccc-CcCccCChhHcCcHHHHHHHHH
Confidence 69999999999999999999999 9999999999999999 9999999999999999998764
No 37
>PRK06153 hypothetical protein; Provisional
Probab=99.81 E-value=2.7e-20 Score=138.22 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=69.8
Q ss_pred ccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcc-cccCCccCc--hhhhcccC
Q psy9593 6 ITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQF-LAPHEDIGK--NGLKPPTS 82 (84)
Q Consensus 6 ~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~-~~~~~diGk--~ka~~~~~ 82 (84)
.....+.+.|++|++++|+|+||||+|+.++.+|+++||++|+|+|+|.|+++|| +||+ +++.+|+|+ +|++++++
T Consensus 162 s~R~~i~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNL-nRQ~gaf~~~DvGk~~~KVevaa~ 240 (393)
T PRK06153 162 SSRAGIGALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNA-FRSPGAASIEELREAPKKVDYFKS 240 (393)
T ss_pred ccccChHHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEeccccc-ccccccCCHhHcCCcchHHHHHHH
Confidence 3344456789999999999999999999999999999999999999999999999 9998 568899999 99999876
Q ss_pred C
Q psy9593 83 R 83 (84)
Q Consensus 83 r 83 (84)
|
T Consensus 241 r 241 (393)
T PRK06153 241 R 241 (393)
T ss_pred H
Confidence 4
No 38
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.80 E-value=2.6e-20 Score=131.34 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=70.7
Q ss_pred CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
..|.++.++|++++|+|+|+||+||+++..|+++|+|+|+|+|.|.|+.+|+ |||.-.-..++|++|+++++||
T Consensus 19 l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~-NRQi~A~~~~iGk~Kv~vm~er 92 (263)
T COG1179 19 LYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNT-NRQIHALLGDIGKPKVEVMKER 92 (263)
T ss_pred HcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccccc-chhhHhhhhhcccHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999 9998888889999999999886
No 39
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.80 E-value=3.9e-20 Score=133.82 Aligned_cols=61 Identities=33% Similarity=0.494 Sum_probs=58.9
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCc--cCchhhhcccCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED--IGKNGLKPPTSR 83 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~d--iGk~ka~~~~~r 83 (84)
||+|+|+||+|++++++|+++||++|+++|+|.|+.+|+ +||++|+.+| +|++||++++++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL-~RQ~L~~~~D~~iGk~Ka~aaa~~ 63 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNP-VRQSLFTFEDCKGGKPKAEAAAER 63 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccC-CcccccccchhhcCccHHHHHHHH
Confidence 699999999999999999999999999999999999999 9999999999 999999998765
No 40
>KOG2014|consensus
Probab=99.78 E-value=1.3e-19 Score=130.78 Aligned_cols=76 Identities=47% Similarity=0.647 Sum_probs=72.7
Q ss_pred CCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCCC
Q psy9593 8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSRP 84 (84)
Q Consensus 8 ~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r~ 84 (84)
..+|.++|++|+++||+++|..|+|+|++|||+++||++++++|+..|.++|+ +.|||++.+++|++||++..+|+
T Consensus 19 RLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~-~~qFli~~~~vg~~raeas~erl 94 (331)
T KOG2014|consen 19 RLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDV-GAQFLISASSVGQTRAEASLERL 94 (331)
T ss_pred HHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcC-CceeEEchhhhchHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999 99999999999999999988763
No 41
>KOG2017|consensus
Probab=99.78 E-value=2.3e-20 Score=137.06 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=75.0
Q ss_pred ccccCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593 4 AIITSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS 82 (84)
Q Consensus 4 ~~~~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~ 82 (84)
-+++|+++..+|.+|++++|+||||||+||..+.+|+.+|+|+|-|+|.|.|+.+|+ +||.+++++.+|+.||++++.
T Consensus 50 Qlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNl-hRQVlh~ea~vg~~Ka~sA~~ 127 (427)
T KOG2017|consen 50 QLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNL-HRQVLHTEARVGMHKAESAAA 127 (427)
T ss_pred eeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhH-HHHHhhhhhhhhhHHHHHHHH
Confidence 378899999999999999999999999999999999999999999999999999999 999999999999999988753
No 42
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.76 E-value=4.5e-19 Score=125.07 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=58.0
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCC-----C-----cEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGV-----K-----SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv-----~-----~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
-++.+|+|+|+||+||+++++|+++|+ | +|+++|+|.|+++|| +||+ |.+.|+|++|++++++|
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNL-nRQl-f~~~dVG~~Ka~v~~~r 82 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANV-GRQA-FYPADVGQNKAIVLVNR 82 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchh-hccc-CChhHCCcHHHHHHHHH
Confidence 478899999999999999999999863 4 899999999999999 9995 55689999999998875
No 43
>PRK07877 hypothetical protein; Provisional
Probab=99.75 E-value=8.4e-19 Score=138.13 Aligned_cols=72 Identities=24% Similarity=0.270 Sum_probs=67.7
Q ss_pred CCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 9 ~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
.++.++|++|++++|+|+|+| +|+.++.+|+++|| |+|+|+|+|.|+.+|| ||| +++..|+|++|+++++++
T Consensus 96 ~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNL-nRq-~~~~~diG~~Kv~~a~~~ 168 (722)
T PRK07877 96 KITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNL-NRV-PAGVFDLGVNKAVVAARR 168 (722)
T ss_pred hCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEccccc-ccc-cCChhhcccHHHHHHHHH
Confidence 367899999999999999996 99999999999996 9999999999999999 998 588999999999998865
No 44
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.74 E-value=1e-18 Score=117.32 Aligned_cols=60 Identities=27% Similarity=0.366 Sum_probs=56.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
+|+|+|+||+|++++++|+++|+++++++|+|.|+++|+ +||+++ .+|+|++|+++++++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl-~Rq~~~-~~~vg~~Ka~~~~~~ 60 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNL-NRQQYF-LSQIGEPKVEALKEN 60 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcch-hccccc-HhhCCChHHHHHHHH
Confidence 699999999999999999999999999999999999999 999855 689999999988754
No 45
>KOG2012|consensus
Probab=99.74 E-value=1e-18 Score=138.16 Aligned_cols=73 Identities=40% Similarity=0.606 Sum_probs=69.6
Q ss_pred CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccCC
Q psy9593 10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTSR 83 (84)
Q Consensus 10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~r 83 (84)
.|.+++++|..++|+|.|++|+|.||||||+++||+++||.|+..+..+|| +.|||++++||||+||++..+|
T Consensus 27 lG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DL-ssqf~L~E~DigknRA~as~~~ 99 (1013)
T KOG2012|consen 27 LGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDL-SSQFYLSEEDIGKNRAEASVEK 99 (1013)
T ss_pred ccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhh-ccceeeeHHhcCCchHHHHHHH
Confidence 367999999999999999999999999999999999999999999999999 9999999999999999987654
No 46
>KOG2012|consensus
Probab=99.73 E-value=2.1e-18 Score=136.51 Aligned_cols=72 Identities=28% Similarity=0.443 Sum_probs=68.0
Q ss_pred CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCC-----cEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593 10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVK-----SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS 82 (84)
Q Consensus 10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~-----~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~ 82 (84)
+|.+-|+||.+.++++||+|++|||.+||++++|++ .|++.|+|.++.+|| +|||+|+..||||+|+++++.
T Consensus 420 fG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNL-nRQFLFR~~dVgk~KSe~AA~ 496 (1013)
T KOG2012|consen 420 FGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNL-NRQFLFRPWDVGKPKSEVAAA 496 (1013)
T ss_pred hchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccc-cceeeccccccCchHHHHHHH
Confidence 567889999999999999999999999999999994 699999999999999 999999999999999998764
No 47
>KOG2018|consensus
Probab=99.65 E-value=9.7e-17 Score=117.27 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=69.4
Q ss_pred CcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593 10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS 82 (84)
Q Consensus 10 ~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~ 82 (84)
+|+|+|+|++++-|+|+||||+|++++-+|+++|+++|.++|+|.|+.+.| |||......|+|.||+.++++
T Consensus 64 fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSL-NrHs~Atl~DVG~PK~~clkk 135 (430)
T KOG2018|consen 64 FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSL-NRHSCATLADVGTPKVMCLKK 135 (430)
T ss_pred hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhh-hhhhhhhHhhcCCchHHHHHH
Confidence 578999999999999999999999999999999999999999999999999 999999999999999998875
No 48
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.63 E-value=1.3e-16 Score=115.86 Aligned_cols=72 Identities=26% Similarity=0.284 Sum_probs=65.4
Q ss_pred cccCC-Cc-HHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593 5 IITSS-SI-LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS 82 (84)
Q Consensus 5 ~~~~~-~~-~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~ 82 (84)
++.|+ .+ .++|++|++++|+ +||+|+.++.+|+. |||+|+++|+|.|+.+|| + ++|+++|+|++|++++++
T Consensus 59 l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL-~--~L~~~~diG~~K~~~a~~ 131 (318)
T TIGR03603 59 LTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAE-I--DLYSKEFILKKDIRDLTS 131 (318)
T ss_pred hcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhH-H--HHhChhhcCcHHHHHHHH
Confidence 44555 34 6689999999999 99999999999999 999999999999999999 7 899999999999999876
Q ss_pred C
Q psy9593 83 R 83 (84)
Q Consensus 83 r 83 (84)
|
T Consensus 132 ~ 132 (318)
T TIGR03603 132 N 132 (318)
T ss_pred H
Confidence 4
No 49
>KOG2016|consensus
Probab=99.62 E-value=1.4e-16 Score=119.79 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=70.2
Q ss_pred CCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593 8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS 82 (84)
Q Consensus 8 ~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~ 82 (84)
..++.++|..|..++||++||+++|+|++|||++.|||+|+++|...|..+|+ +.|||...+++||+||++..+
T Consensus 15 Rlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~-g~nF~~~~~~~GksrA~a~~e 88 (523)
T KOG2016|consen 15 RLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDL-GNNFFLDAKSIGKSRAEATLE 88 (523)
T ss_pred HHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecch-hhHHHHHHHhhchhHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999 999999999999999988654
No 50
>KOG2336|consensus
Probab=99.25 E-value=7.7e-12 Score=90.95 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=63.6
Q ss_pred cHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhcccC
Q psy9593 11 ILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPTS 82 (84)
Q Consensus 11 ~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~~ 82 (84)
+.+..+|++...|.|+|.||+|+-.|..|.++|||++.++|.|.|+..|. +|-| |.++..|..|++++.+
T Consensus 73 IV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANM-NRLF-f~P~QaGlsKv~AA~~ 142 (422)
T KOG2336|consen 73 IVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANM-NRLF-FQPDQAGLSKVDAAVQ 142 (422)
T ss_pred chhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcc-cccc-cCcccccchHHHHHHH
Confidence 35566899999999999999999999999999999999999999999999 9985 6678899999988753
No 51
>KOG2337|consensus
Probab=99.21 E-value=5.6e-12 Score=96.85 Aligned_cols=68 Identities=28% Similarity=0.457 Sum_probs=63.5
Q ss_pred HHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcccccCCcc---CchhhhcccCC
Q psy9593 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI---GKNGLKPPTSR 83 (84)
Q Consensus 15 q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~di---Gk~ka~~~~~r 83 (84)
..++++.++++.|+|.+||.+|++|...||++||.+|..+|+.+|- -||-+|+-+|- |++||+++++|
T Consensus 335 Ld~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNP-VRQsLy~FEDc~~~g~~KAe~Aa~r 405 (669)
T KOG2337|consen 335 LDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNP-VRQSLYTFEDCLGGGRPKAETAAQR 405 (669)
T ss_pred hhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccch-hhhhhhhhhhhhccCCcchHHHHHH
Confidence 4689999999999999999999999999999999999999999999 99999998885 59999998765
No 52
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=98.33 E-value=5e-07 Score=70.95 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=44.8
Q ss_pred HHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCC
Q psy9593 13 PYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTA 63 (84)
Q Consensus 13 ~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~ 63 (84)
+..++.++++|+|+|.|++|+.++.+|+.+|+++|..+|.|.+ ++|+ +|
T Consensus 122 ~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNl-nR 170 (637)
T TIGR03693 122 LKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHAL-DR 170 (637)
T ss_pred hhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhh-hH
Confidence 4444559999999999999999999999999999999999999 8999 86
No 53
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.89 E-value=3.3e-05 Score=49.61 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=38.5
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV 60 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl 60 (84)
..+++++|+|+|+||.|..++++|...|+++|++++.+.=...++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l 52 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEAL 52 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHH
Confidence 368999999999999999999999999999999998754433344
No 54
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.67 E-value=3.7e-05 Score=52.57 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=50.9
Q ss_pred CCCcHHHHHHhhcCcEEEEcCChhHHH-HHHHHHHhCCCcE------EEE---eCCccccccCCCCccc
Q psy9593 8 SSSILPYQSRLRATKILLIGVEGVGAE-IAKNIILSGVKSV------CLL---DSGVVTKEDVNTAQFL 66 (84)
Q Consensus 8 ~~~~~~~q~~l~~~~vlivG~gg~G~e-iak~L~l~Gv~~i------~l~---D~d~v~~~nl~~~~~~ 66 (84)
.....+.|+++++++|.|.|.|+.+++ ++.+|..+|++.+ +++ |.+..+.+++ |+|++
T Consensus 93 g~~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~-n~~~l 160 (193)
T TIGR03882 93 GVDPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAI-NQRAL 160 (193)
T ss_pred CCCHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHH-HHHHH
Confidence 345678899999999999999999988 9999999999988 888 8888888888 88854
No 55
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.56 E-value=0.00012 Score=51.03 Aligned_cols=37 Identities=27% Similarity=0.560 Sum_probs=35.2
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVK--SVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~--~i~l~D~d 53 (84)
.++..+|+|+|+|+.|..+++.|...|+. +|+++|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 57889999999999999999999999999 99999987
No 56
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.52 E-value=0.00015 Score=52.00 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=34.8
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
++.++|+|+|+||+|..++..|...|+++|+|+|.+.-.
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~k 163 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPAR 163 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHH
Confidence 566799999999999999999999999999999886433
No 57
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.24 E-value=0.00056 Score=48.96 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=33.7
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++.++|+|+|+||.+..++..|...|+.+++|++.+.
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 4577999999999999999999999999999998753
No 58
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.11 E-value=0.00088 Score=48.21 Aligned_cols=43 Identities=19% Similarity=0.407 Sum_probs=36.1
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV 60 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl 60 (84)
++.++|+|+|+||.+..++..|...|+.+|+++|.+.-....+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~L 167 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL 167 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence 4567999999999999999999999999999998764433333
No 59
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.10 E-value=0.0012 Score=39.20 Aligned_cols=47 Identities=26% Similarity=0.368 Sum_probs=39.1
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCcc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQF 65 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~~ 65 (84)
+..++++|+|+|..|..++.+|...|..++.++|.|.+-..-- ...+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi~i~~~~-~~~~ 67 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDILVTATP-AGVP 67 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEEEcCC-CCCC
Confidence 6789999999999999999999999888999999976654443 4443
No 60
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.07 E-value=0.0015 Score=37.99 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=28.2
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
||+|+|.|.+|+|+|..|...|. ++++++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccc
Confidence 68999999999999999999997 588887643
No 61
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.99 E-value=0.0013 Score=46.73 Aligned_cols=37 Identities=22% Similarity=0.507 Sum_probs=33.9
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+.+++|+|+|+|++|..+++.|...|+.++++++.+.
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 5678999999999999999999999999999998754
No 62
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.99 E-value=0.0014 Score=47.27 Aligned_cols=36 Identities=19% Similarity=0.487 Sum_probs=33.3
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++.++++|+|+||.+..++..|+..|+.+|+|++.+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 566799999999999999999999999999999876
No 63
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=96.90 E-value=0.0013 Score=45.09 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=48.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHH---HhCCCcEEEEeCCccccccCCCCcccccCCccCchhhhccc
Q psy9593 19 RATKILLIGVEGVGAEIAKNII---LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKPPT 81 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~---l~Gv~~i~l~D~d~v~~~nl~~~~~~~~~~diGk~ka~~~~ 81 (84)
-+-.|.++|||-+|--++-+|. +-|..+|.++|...|++.|+-.+ .. -..+|.+|++-++
T Consensus 17 PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihr--r~-Ga~~GEyKv~Fi~ 79 (217)
T COG4015 17 PRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHR--RL-GAKVGEYKVDFIK 79 (217)
T ss_pred CCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHH--Hh-CCCcchhHHHHHH
Confidence 4557999999999999999998 57999999999999999998222 22 3568999987543
No 64
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.84 E-value=0.0021 Score=45.98 Aligned_cols=39 Identities=28% Similarity=0.538 Sum_probs=33.6
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHh----CC------CcEEEEeCCc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILS----GV------KSVCLLDSGV 54 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~----Gv------~~i~l~D~d~ 54 (84)
++|++.||+++|+|..|.-+++.|+.+ |+ ++|.++|.+-
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G 69 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG 69 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc
Confidence 479999999999999999999999999 99 8999999863
No 65
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.84 E-value=0.0022 Score=46.03 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=33.5
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++.++++|+|+||+|..++..|+..|+.++++++.+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4567899999999999999999999999999998763
No 66
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.83 E-value=0.002 Score=48.59 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=32.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
.+|+|+|+|++|+.++.+|+..|..+|++.|...-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~ 37 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEK 37 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHH
Confidence 589999999999999999999999999999976433
No 67
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.81 E-value=0.0027 Score=40.60 Aligned_cols=37 Identities=19% Similarity=0.476 Sum_probs=32.6
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++..+|+|+|+|++|..+++.|...|..+++++|.+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 5678999999999999999999998877799998753
No 68
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.77 E-value=0.0026 Score=43.59 Aligned_cols=37 Identities=14% Similarity=0.349 Sum_probs=33.2
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.|++.+|+|+|.|.+|...++.|...| .++++++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~ 43 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL 43 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC
Confidence 478899999999999999999999999 4799998754
No 69
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.76 E-value=0.0038 Score=40.46 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=30.1
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593 21 TKILLIGV-EGVGAEIAKNIILSGVK-SVCLLDSG 53 (84)
Q Consensus 21 ~~vlivG~-gg~G~eiak~L~l~Gv~-~i~l~D~d 53 (84)
.||.|+|+ |.+|+.++..|...++. +|.|+|.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 48999999 99999999999999985 59999987
No 70
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.68 E-value=0.0029 Score=47.86 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=34.9
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
.+.+++|+|+|+|+.|..++++|...|+.+|+++....-
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ 216 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIE 216 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 467899999999999999999999999999999976543
No 71
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.67 E-value=0.0035 Score=45.64 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=32.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++.+|.|+|+|.+|..++..|+..|+..+.|+|-+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 567999999999999999999999988899999754
No 72
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.66 E-value=0.0032 Score=41.61 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=33.9
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
.|++.+|+|+|.|.+|...++.|...|. ++++++++..
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~ 47 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEIC 47 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccC
Confidence 6788999999999999999999999998 5999987654
No 73
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.65 E-value=0.002 Score=46.14 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=36.4
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCC----------cEEEEeCCcc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVK----------SVCLLDSGVV 55 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~----------~i~l~D~d~v 55 (84)
++|++.||+++|+|+.|.-+++.|..++++ +|.++|.+-+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 578899999999999999999999999997 8999998643
No 74
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.64 E-value=0.0037 Score=45.63 Aligned_cols=37 Identities=32% Similarity=0.462 Sum_probs=32.3
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++..||.|+|+|.+|+.++..++..|+..+.|+|-+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4567999999999999999999999986699998643
No 75
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.64 E-value=0.0038 Score=44.96 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=30.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~ 54 (84)
.+|.|+|+|++|+.++..|+..|+. ++.++|.+.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 3799999999999999999999985 899999743
No 76
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.60 E-value=0.0043 Score=44.45 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=32.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++++|+|+||.+..++..|...|+.+++|++.+.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 35899999999999999999999999999998764
No 77
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.54 E-value=0.0042 Score=46.71 Aligned_cols=38 Identities=29% Similarity=0.504 Sum_probs=34.5
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+...+|+|+|+|.+|..++++|...|+.+++++|.+.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~ 214 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY 214 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 36789999999999999999999999999999998754
No 78
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.53 E-value=0.0038 Score=45.22 Aligned_cols=40 Identities=33% Similarity=0.530 Sum_probs=35.9
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHh----CC------CcEEEEeCCcc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILS----GV------KSVCLLDSGVV 55 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~----Gv------~~i~l~D~d~v 55 (84)
++|++.||+++|+|+.|.-+++.|..+ |+ ++|.++|.+-+
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl 70 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL 70 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence 578899999999999999999999988 99 78999998643
No 79
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.49 E-value=0.0068 Score=44.42 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=32.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHh-CCCcEEEEeCCcccc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILS-GVKSVCLLDSGVVTK 57 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~-Gv~~i~l~D~d~v~~ 57 (84)
...|+|||+|-+|+.+|..|+.. |..+++++|.+.+..
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~ 68 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGG 68 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccC
Confidence 44799999999999999999985 876799999876643
No 80
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.48 E-value=0.0054 Score=41.91 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=32.4
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.++.++|+|+|.|.+|..++++|...|. ++++.|.+.
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~ 61 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINE 61 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence 4678899999999999999999999998 588888653
No 81
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.47 E-value=0.0065 Score=40.50 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=34.5
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTK 57 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~ 57 (84)
..+..++|.|+|.|.+|.++++.|...|. ++..+|...-..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~ 72 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPE 72 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHH
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChh
Confidence 47889999999999999999999999999 588888866543
No 82
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.46 E-value=0.0054 Score=42.65 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=34.9
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.++.++|+|.|.|.+|..+++.|...|...+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 56889999999999999999999999999899988765
No 83
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0059 Score=42.47 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=28.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++++|+|+|.+|..+|+.|...|-. ++++|.|.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCH
Confidence 4799999999999999999999986 67776544
No 84
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.44 E-value=0.0034 Score=38.48 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=31.7
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+++.+|+|+|.|.+|..=++.|..+|. +++++.++.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence 4788999999999999999999999995 799998885
No 85
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.42 E-value=0.0055 Score=44.30 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=34.0
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+...+|+|+|+|.+|..++++|...|..+++++|.+.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 5789999999999999999999998999999998764
No 86
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.38 E-value=0.0063 Score=43.80 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=29.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+.||+|+|+|++|+-++-.|..+|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 4689999999999999999999997 59999875
No 87
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=96.37 E-value=0.0075 Score=43.43 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTK 57 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~ 57 (84)
.+.+|+|||.|-+|..+|..|+..|. +++++|.+.+..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCC
Confidence 46789999999999999999999999 799999888754
No 88
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.36 E-value=0.0069 Score=43.88 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=35.1
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccccc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKED 59 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~n 59 (84)
+..+|+|+|+||.+..++..|...|+.+|++++...-....
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~ 165 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEE 165 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 35889999999999999999999999999999875544333
No 89
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.34 E-value=0.0057 Score=42.79 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=28.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
..|+|||+|..|..+|..|.+.|+. ++|+|...-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 4799999999999999999999996 999987654
No 90
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.33 E-value=0.0085 Score=41.95 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=30.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
.|+|||+|-+|+.+|..|+..|. +++|+|.+.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence 48999999999999999999999 69999998554
No 91
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.32 E-value=0.0068 Score=43.62 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.3
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
...|+|||+|-+|+.+|..|+..|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999997 5999998754
No 92
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.32 E-value=0.0069 Score=45.56 Aligned_cols=37 Identities=27% Similarity=0.531 Sum_probs=34.1
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+...+|+|+|+|.+|..++++|...|+.+++++|.+.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 6789999999999999999999999999999998764
No 93
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.31 E-value=0.007 Score=44.07 Aligned_cols=34 Identities=24% Similarity=0.523 Sum_probs=30.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDS 52 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~ 52 (84)
+..||.|+|+|.+|+.++..|+..|+- +|.|+|-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 346999999999999999999999985 7999996
No 94
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.22 E-value=0.0082 Score=44.54 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=33.9
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.+.+++|+|+|+|-+|..++++|...|+.++++....
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4678999999999999999999999999999998655
No 95
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.21 E-value=0.0096 Score=39.94 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=32.1
Q ss_pred HhhcCcEEEEcCChh-HHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGV-GAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~-G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.|.+++|+|+|+|.. |..++++|...|+ ++++++...
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~ 78 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT 78 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc
Confidence 468899999999985 8889999999999 599988653
No 96
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.17 E-value=0.0093 Score=42.93 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=33.0
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+..++|+|+|.|.+|..+++.|...|. +++++|...
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~ 184 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSS 184 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 5678999999999999999999999997 799988653
No 97
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.15 E-value=0.009 Score=44.31 Aligned_cols=44 Identities=14% Similarity=0.337 Sum_probs=35.3
Q ss_pred HhhcCcEEEEcC-ChhHHHHHHHHHH-hCCCcEEEEeCCccccccC
Q psy9593 17 RLRATKILLIGV-EGVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDV 60 (84)
Q Consensus 17 ~l~~~~vlivG~-gg~G~eiak~L~l-~Gv~~i~l~D~d~v~~~nl 60 (84)
.+++++|+|+|+ |.+|+++++.|.. .|+.++++++.+.-....+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L 197 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL 197 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence 467899999998 8999999999985 5899999998754333333
No 98
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=96.15 E-value=0.0076 Score=43.94 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=32.8
Q ss_pred EEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCccccccCCCCc
Q psy9593 23 ILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQ 64 (84)
Q Consensus 23 vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl~~~~ 64 (84)
|+|-| +|++|+++++.|+..+..+|.++|.+.-...++ .+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l-~~~ 42 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL-ERE 42 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH-HHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH-HHH
Confidence 67887 899999999999999999999999986665555 444
No 99
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.15 E-value=0.01 Score=43.59 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=30.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++|+|||+|-+|+.+|..|+..|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 589999999999999999999997 599999876
No 100
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.14 E-value=0.0088 Score=45.51 Aligned_cols=44 Identities=27% Similarity=0.515 Sum_probs=37.6
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV 60 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl 60 (84)
.|+.++|+++|+|-.|.-++++|...|+.+|+++....-....|
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~L 218 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEEL 218 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 47788999999999999999999999999999987655544444
No 101
>PRK09126 hypothetical protein; Provisional
Probab=96.14 E-value=0.0095 Score=43.25 Aligned_cols=36 Identities=25% Similarity=0.462 Sum_probs=31.7
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
.+..|+|||+|..|+.+|..|.+.|+. ++|+|....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence 357899999999999999999999995 899987653
No 102
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.13 E-value=0.011 Score=41.62 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=28.2
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+|+|+|+|.+|+.++..|..+|. +++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 79999999999999999999995 69999873
No 103
>PRK12367 short chain dehydrogenase; Provisional
Probab=96.12 E-value=0.017 Score=40.14 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=36.1
Q ss_pred cHHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 11 ILPYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 11 ~~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..-.|.+++.++++|.| .|++|.++++.|+..|.. +.+++.+.
T Consensus 5 ~~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~~-Vi~~~r~~ 48 (245)
T PRK12367 5 DPMAQSTWQGKRIGITGASGALGKALTKAFRAKGAK-VIGLTHSK 48 (245)
T ss_pred chhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEECCc
Confidence 34569999999999998 689999999999999984 77776653
No 104
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.12 E-value=0.011 Score=40.64 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=33.2
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
+++.+|+|+|.|.+|..-++.|...|. ++++++++.-
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~ 43 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE 43 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence 778899999999999999999999997 5999988643
No 105
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.08 E-value=0.012 Score=38.59 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=27.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++|.++|+|..|+.++++|..+|.. ++++|.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccch
Confidence 5899999999999999999999985 88998653
No 106
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.08 E-value=0.011 Score=43.10 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=28.9
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG 53 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d 53 (84)
||.|+|+|.+|+.+|..|+..|+ +++.|+|-.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 68999999999999999999898 679999963
No 107
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.07 E-value=0.016 Score=45.75 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=45.2
Q ss_pred CCCcHHHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593 8 SSSILPYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV 60 (84)
Q Consensus 8 ~~~~~~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl 60 (84)
+....+-+.-+.+++|+|-| .|++|+|+++.++..+.++|.++|.|.....++
T Consensus 238 ~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i 291 (588)
T COG1086 238 ALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLI 291 (588)
T ss_pred CCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHH
Confidence 34456677889999999998 678999999999999999999999988766544
No 108
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.06 E-value=0.013 Score=42.28 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=29.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
.|+|||+|-+|+.+|..|++.|. +++|+|....
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999997 5999998654
No 109
>PLN00203 glutamyl-tRNA reductase
Probab=96.03 E-value=0.0095 Score=46.35 Aligned_cols=37 Identities=16% Similarity=0.436 Sum_probs=33.6
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+...+|+|+|+|.+|..++++|...|+.++++++...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~ 300 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE 300 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 5579999999999999999999999999999997753
No 110
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.00 E-value=0.013 Score=39.35 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=28.3
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
+|.|+|+|..|..++..++.+|.. ++++|.+.-.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSPEA 34 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECChHH
Confidence 689999999999999999999985 9999986543
No 111
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.99 E-value=0.013 Score=44.89 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=30.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..+|+|||+|-+|+++|..|+..|+. ++|+|...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEccC
Confidence 46899999999999999999999985 99998543
No 112
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.96 E-value=0.012 Score=42.77 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=30.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
...|+|||+|..|+.+|..|...|++ ++|+|....
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGAS-VALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCe-EEEEeCCCC
Confidence 45799999999999999999999985 999987643
No 113
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.95 E-value=0.012 Score=45.70 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=31.8
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++++|+|+||+|..+++.|+..|+ ++++++.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~ 411 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRT 411 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 567899999999999999999999999 89998764
No 114
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.94 E-value=0.016 Score=41.94 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=30.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~ 54 (84)
+|.|+|+|.+|+.++..|+..|+ .++.++|.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 69999999999999999999996 7799999754
No 115
>PRK06185 hypothetical protein; Provisional
Probab=95.94 E-value=0.015 Score=42.48 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=31.2
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+..|+|||+|.+|..+|..|+..|+. ++|+|...
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVD-VTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 457899999999999999999999985 99999763
No 116
>PRK06184 hypothetical protein; Provisional
Probab=95.93 E-value=0.014 Score=44.31 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=30.7
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++..|+|||+|..|..+|..|.+.|+. ++|+|..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 357899999999999999999999996 9999864
No 117
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.91 E-value=0.017 Score=41.64 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=30.6
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
.|+|||+|-+|+.+|..|+..|. +++++|.+.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence 68999999999999999999997 59999987763
No 118
>PRK08013 oxidoreductase; Provisional
Probab=95.91 E-value=0.013 Score=43.08 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=31.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
+..|+|||+|.+|..+|..|...|++ ++++|...-
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCCC
Confidence 46899999999999999999999995 999987653
No 119
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.012 Score=44.80 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=35.2
Q ss_pred HHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 12 ~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++....+..++|+|+|+|+.|..+++.|...|. .+++.|.+
T Consensus 7 ~~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 7 LSALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred hhhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 344556777899999999999999999999998 79999964
No 120
>PRK07236 hypothetical protein; Provisional
Probab=95.87 E-value=0.016 Score=42.34 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=32.0
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++..+|+|||+|..|..+|..|...|+. ++|+|...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 4567999999999999999999999995 99998754
No 121
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.87 E-value=0.012 Score=43.11 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=30.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
...|+|||+|..|..+|..|...|++ ++|+|...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLE-VLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCE-EEEEcCCC
Confidence 35799999999999999999999985 99998765
No 122
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=95.85 E-value=0.015 Score=43.08 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=28.6
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+|+|||+|+.|+.+|..|+..|.+ +.++|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence 799999999999999999999995 8899865
No 123
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.84 E-value=0.017 Score=41.26 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=29.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
.||.|+|+|.+|+.++..++..|..++.++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999988668999986
No 124
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.84 E-value=0.016 Score=42.39 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=29.4
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+|+|||+|-+|+.+|..|+..|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 79999999999999999999997 599999874
No 125
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.83 E-value=0.017 Score=42.09 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d 53 (84)
..||.|+|+|.+|+.++..|+..|.. +|.|+|-.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~ 37 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV 37 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 46999999999999999999999984 69999963
No 126
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.83 E-value=0.016 Score=41.58 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=29.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+.+|+|+|+|++|+.++..|..+|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 4689999999999999999999996 588887765
No 127
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.82 E-value=0.012 Score=45.02 Aligned_cols=41 Identities=27% Similarity=0.495 Sum_probs=37.5
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCCccc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVK--SVCLLDSGVVT 56 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~--~i~l~D~d~v~ 56 (84)
++|+..+|++.|+|..|..+++.|..+|+. +|.++|..-+-
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l 237 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLL 237 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcc
Confidence 588999999999999999999999999998 99999986443
No 128
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.80 E-value=0.016 Score=43.05 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=33.0
Q ss_pred HHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 15 q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
...|+.++|.|||.|.+|..+++||..+|+. +.+.|+
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r 47 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVR 47 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEEC
Confidence 4689999999999999999999999999995 777764
No 129
>PRK06753 hypothetical protein; Provisional
Probab=95.80 E-value=0.019 Score=41.42 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=29.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|+|||+|..|..+|..|.+.|+. ++|++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~-v~v~E~~~ 33 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHE-VKVFEKNE 33 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 3799999999999999999999996 89998654
No 130
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.79 E-value=0.016 Score=45.61 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=30.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..|+|||+|-+|+.+|..|+..|.+ ++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~-V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQ-VTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 5899999999999999999999985 99999874
No 131
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.78 E-value=0.016 Score=42.00 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=30.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHh---CCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILS---GVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~---Gv~~i~l~D~d 53 (84)
+..+|+|||+|..|..+|..|.+. |++ ++|+|..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~-v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLP-VALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCE-EEEEeCC
Confidence 456899999999999999999998 995 9999975
No 132
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.78 E-value=0.019 Score=41.44 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=32.9
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+..++|+|+|.|.+|..+++.|...|. +++++|.+.
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~ 185 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKS 185 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 568999999999999999999999998 799998874
No 133
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.75 E-value=0.02 Score=40.62 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=29.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++|.|+|+|.+|..++.+|+..|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999997 599998764
No 134
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.75 E-value=0.02 Score=40.75 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|.|+|+|..|+.++..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 599998754
No 135
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.75 E-value=0.017 Score=42.16 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
....|+|||+|..|..+|..|...|++ ++|+|...
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLS-VALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence 346899999999999999999999996 99999764
No 136
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=95.74 E-value=0.019 Score=41.56 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=31.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
...|+|||+|..|..+|..|.+.|+ +++++|.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 3579999999999999999999998 5999987654
No 137
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.72 E-value=0.018 Score=42.08 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=31.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
..+|+|||+|..|..+|..|...|+. ++|+|....
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLR-IALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCE-EEEEecCCc
Confidence 46899999999999999999999995 999987653
No 138
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.71 E-value=0.02 Score=40.64 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=29.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.++|.|+|+|..|..++.+|+..|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3689999999999999999999998 59999865
No 139
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.70 E-value=0.02 Score=41.89 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
...|+|+|+|..|..+|..|.+.|+ +++|+|...
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence 3589999999999999999999998 499999653
No 140
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.68 E-value=0.025 Score=36.00 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=28.2
Q ss_pred EEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 23 ILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 23 vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
|+|+|+|++|+.++..|..+|.. +++++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc
Confidence 78999999999999999998885 99988777
No 141
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.67 E-value=0.018 Score=42.36 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=30.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...|+|+|+|.+|..+|-.|.+.|+. ++++|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence 46899999999999999999999996 8999874
No 142
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.67 E-value=0.021 Score=41.51 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=30.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+.+|+|||+|..|..+|..|...|+. ++++|...
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~-v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIK-VKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCc-EEEEeeCc
Confidence 46899999999999999999999995 99998754
No 143
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=95.65 E-value=0.022 Score=41.79 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=28.6
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.|+|||+|+.|+..|..|+..|.. +.++|..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~-V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIE-TILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-EEEEECC
Confidence 589999999999999999999985 8899876
No 144
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.62 E-value=0.02 Score=41.17 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=29.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|+|+|+|.+|+.++..|..+|. +++++|.+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecHH
Confidence 579999999999999999999997 599998754
No 145
>PRK06847 hypothetical protein; Provisional
Probab=95.61 E-value=0.025 Score=40.77 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..+|+|||+|..|..+|..|...|+. ++|+|...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~-v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA-VDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 46899999999999999999999996 89998653
No 146
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.59 E-value=0.025 Score=40.39 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=29.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++|.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 479999999999999999999997 599998643
No 147
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.58 E-value=0.023 Score=40.67 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
.+|.|+|+|..|+.+|.+++.+|.. ++++|.+.-.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETTEEL 40 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHH
Confidence 4899999999999999999999984 9999876544
No 148
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.57 E-value=0.025 Score=39.94 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=29.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.+|.|+|+|-+|+.++..|+..|. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 479999999999999999999998 69999854
No 149
>PRK08264 short chain dehydrogenase; Validated
Probab=95.53 E-value=0.026 Score=37.95 Aligned_cols=36 Identities=17% Similarity=0.435 Sum_probs=31.2
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+.+++++|.| .|++|.++++.|...|..++.+++.+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 5677899998 69999999999999999678888754
No 150
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.53 E-value=0.026 Score=40.07 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|.|+|+|..|+.++..|+..|. +++++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999997 599998753
No 151
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.53 E-value=0.024 Score=41.64 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=30.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...|+|+|+|.+|..+|-.|.+.|++ ++|+|..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~-V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLD-VTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCc-EEEEccC
Confidence 46799999999999999999999975 9999987
No 152
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.53 E-value=0.024 Score=38.23 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=31.1
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++++++|.| .|++|.++++.|...|.. +++++...
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~ 39 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNE 39 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCH
Confidence 5678999998 689999999999999986 88887654
No 153
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.52 E-value=0.026 Score=40.14 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=29.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++|.|+|+|-+|+.++.+|+.+|. +++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999997 599998754
No 154
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=95.52 E-value=0.032 Score=42.01 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=31.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHh--CCCcEEEEeCCccc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILS--GVKSVCLLDSGVVT 56 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~--Gv~~i~l~D~d~v~ 56 (84)
...|+|||.|-+|..+|..|+.. |. +++|+|.+.+.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~~~g 61 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEADLCG 61 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCCccc
Confidence 46899999999999999999998 65 69999988764
No 155
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=95.51 E-value=0.022 Score=41.91 Aligned_cols=33 Identities=30% Similarity=0.566 Sum_probs=30.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG 53 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d 53 (84)
.||.|+|+|.+|+.++..|+.-+++ ++.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4799999999999999999999999 99999865
No 156
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.50 E-value=0.025 Score=41.83 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=31.5
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..|++++|.|||.|..|..++++|..+|+ ++.+.+..
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~ 49 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLRE 49 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECC
Confidence 46888999999999999999999999998 46665543
No 157
>PRK08244 hypothetical protein; Provisional
Probab=95.49 E-value=0.028 Score=42.53 Aligned_cols=34 Identities=29% Similarity=0.572 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+..|+|||+|.+|..+|..|.+.|+. ++|+|...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~-v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVK-TCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 36799999999999999999999995 99998653
No 158
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.48 E-value=0.023 Score=40.98 Aligned_cols=31 Identities=35% Similarity=0.605 Sum_probs=27.7
Q ss_pred EEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593 23 ILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG 53 (84)
Q Consensus 23 vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d 53 (84)
|.|+|+|.+|+.++..|+..|+ .+++++|.+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~ 32 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 5799999999999999999897 569999974
No 159
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.48 E-value=0.029 Score=39.63 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=30.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..++++|+|+|++|..+++.|...|. +++++|.+
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999999999999999999996 79998765
No 160
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.48 E-value=0.025 Score=41.44 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=32.9
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..|..++|.|+|.|.+|.++++.|...|. ++..+|..
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~ 182 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRT 182 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 36899999999999999999999999998 58888864
No 161
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.47 E-value=0.027 Score=41.86 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=32.2
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+...+|+|+|+|.+|..+++.|...|+ +++++|.+.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~ 200 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINI 200 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence 567889999999999999999999999 599998753
No 162
>PLN02602 lactate dehydrogenase
Probab=95.47 E-value=0.025 Score=41.95 Aligned_cols=33 Identities=33% Similarity=0.601 Sum_probs=30.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSG 53 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d 53 (84)
.||.|+|+|.+|+.++..|+..|+ .+|.|+|-.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~ 71 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN 71 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 699999999999999999999998 579999963
No 163
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.46 E-value=0.028 Score=40.69 Aligned_cols=32 Identities=34% Similarity=0.384 Sum_probs=29.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
.+|.|+|+|-+|+.+|..|+..|..++.++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 58999999999999999999998867999997
No 164
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.46 E-value=0.027 Score=41.33 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=32.2
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.|+.++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 5788999999999999999999999998 48888864
No 165
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.45 E-value=0.024 Score=41.19 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=27.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
.||+|+|+|++|+-.+..|.++| ..++++-.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R 31 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVR 31 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEec
Confidence 48999999999999999999999 66777644
No 166
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.42 E-value=0.03 Score=36.82 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=23.4
Q ss_pred EEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 24 LLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 24 livG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+|||+|..|-.++..|...|+..++++|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence 699999999999999999999879999965
No 167
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.41 E-value=0.025 Score=40.56 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=29.5
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
.|+|||+|..|..+|..|.+.|+ +++|+|...-
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL-KIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCc
Confidence 38999999999999999999998 5999988754
No 168
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.41 E-value=0.03 Score=41.03 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHh--CCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILS--GVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~--Gv~~i~l~D~d~ 54 (84)
..|+|||+|.+|+.+|..|+.. |. +++|+|...
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 6899999999999999999998 86 699999864
No 169
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=95.41 E-value=0.03 Score=42.83 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=28.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.+|+|+|+|-+|+++|..|+..|+. ++|++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~-V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVP-VILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc-EEEEecc
Confidence 4799999999999999999999985 9999853
No 170
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.40 E-value=0.045 Score=33.29 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=27.4
Q ss_pred EEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 23 ILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 23 vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
|+|+|.|.+|.++++.|...+ -.++++|.+.-.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~ 33 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPER 33 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHH
Confidence 689999999999999999955 469999988633
No 171
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.39 E-value=0.024 Score=41.22 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=30.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
...|+|||+|..|+.+|..|...|++ ++++|...
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~-V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFS-VAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCE-EEEEcCCC
Confidence 35899999999999999999999985 99998764
No 172
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.37 E-value=0.026 Score=41.35 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=29.5
Q ss_pred cCcEEEEcC-ChhHHHHHHHHHHhCCC------cEEEEeC
Q psy9593 20 ATKILLIGV-EGVGAEIAKNIILSGVK------SVCLLDS 52 (84)
Q Consensus 20 ~~~vlivG~-gg~G~eiak~L~l~Gv~------~i~l~D~ 52 (84)
..||.|+|+ |.+|+.++..|+..|+- ++.|+|-
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 468999999 99999999999988874 5999987
No 173
>PRK12862 malic enzyme; Reviewed
Probab=95.37 E-value=0.019 Score=46.66 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=36.0
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCCcc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVK--SVCLLDSGVV 55 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~--~i~l~D~d~v 55 (84)
++|++.||++.|+|..|..+++.|...|+. +|.++|..-+
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~ 230 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV 230 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence 578999999999999999999999999995 8999997543
No 174
>PRK06834 hypothetical protein; Provisional
Probab=95.36 E-value=0.03 Score=42.82 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=31.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
....|+|||+|.+|..+|..|.+.|+. ++++|...
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~-v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVD-VAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 356899999999999999999999996 89998654
No 175
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.35 E-value=0.032 Score=39.96 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~ 54 (84)
..+|+|+|+|.+|..+++.|...|. .+++++|.+.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 3589999999999999999999996 4788888753
No 176
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.34 E-value=0.022 Score=37.48 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=29.9
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
..+++++|+|||.|-.+.+++.+|+..| .+++++-.
T Consensus 163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~R 198 (203)
T PF13738_consen 163 EDFKGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVTR 198 (203)
T ss_dssp GGCTTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEES
T ss_pred hhcCCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEec
Confidence 3678899999999999999999999999 78988743
No 177
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.32 E-value=0.027 Score=40.71 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=28.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhC-CCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSG-VKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~G-v~~i~l~D~d~ 54 (84)
.|+|||+|..|+.+|..|.+.| +. ++++|...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~-v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIK-IALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCce-EEEEeCCC
Confidence 3899999999999999999999 85 89998764
No 178
>PRK06126 hypothetical protein; Provisional
Probab=95.31 E-value=0.034 Score=42.53 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=30.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..+|+|||+|.+|..+|-.|.+.|+. ++|+|...
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~-v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVD-SILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence 46899999999999999999999996 89998653
No 179
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=95.30 E-value=0.026 Score=41.28 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=28.7
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
|++++|.|+|+|..|..++++|..+|+. +.+.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~~ 34 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGLR 34 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEEC
Confidence 4678999999999999999999999985 555443
No 180
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.30 E-value=0.033 Score=42.28 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=29.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..|+|||+|..|+..|..|+..|+. +.++|...
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~-VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIE-TFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 5799999999999999999999996 88988653
No 181
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.30 E-value=0.035 Score=40.65 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=30.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+.+|+|||+|..|..+|..|.+.|+. ++|+|...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~-v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID-SVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC-EEEEEcCC
Confidence 46899999999999999999999996 88888765
No 182
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.29 E-value=0.037 Score=40.78 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=30.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..+|+|||+|..|...|..|...|+. ++|+|...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGID-NVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCC-EEEEECCC
Confidence 46899999999999999999999996 89998765
No 183
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.29 E-value=0.027 Score=42.50 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=34.0
Q ss_pred cHHHHH-HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 11 ILPYQS-RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 11 ~~~~q~-~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++..|. .++..+|+|+|+|++|.++|..|...|.. ++++|..
T Consensus 6 ~~~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~ 48 (480)
T PRK01438 6 GLTSWHSDWQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDG 48 (480)
T ss_pred chhhcccCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 344442 45677999999999999999999999985 9999854
No 184
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.29 E-value=0.033 Score=40.01 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=29.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..+|.|+|+|..|+.++++|...|. +++++|.+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 4689999999999999999999997 589998653
No 185
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.28 E-value=0.033 Score=38.89 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=32.1
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
.++.++|+|.|.|.+|..+++.|...|..-+.+.|.
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 478999999999999999999999999876657776
No 186
>PRK07045 putative monooxygenase; Reviewed
Probab=95.28 E-value=0.033 Score=40.60 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=30.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
..+|+|||+|..|..+|..|.+.|+. ++|+|...-
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~-v~v~E~~~~ 39 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHS-VTVVERAAR 39 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCc-EEEEeCCCc
Confidence 35899999999999999999999995 999986653
No 187
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.28 E-value=0.036 Score=39.11 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=27.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
.+|+|+|+|++|+.++..|+..|. .+++++.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 379999999999999999999996 4888876
No 188
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.27 E-value=0.035 Score=43.01 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=31.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
...|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 4679999999999999999999998 59999976543
No 189
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.27 E-value=0.037 Score=37.97 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=29.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
.|+|||+|..|..+|..|...|++ ++++|.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~-v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLR-VLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe-EEEEeccCC
Confidence 589999999999999999999995 999987754
No 190
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.26 E-value=0.031 Score=42.59 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=33.5
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
+..++|+|+|+|.+|..+++.|...|. +++++|.+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~r 247 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPIC 247 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchh
Confidence 478899999999999999999999999 59999876543
No 191
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=95.23 E-value=0.032 Score=40.79 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=29.4
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593 22 KILLIGV-EGVGAEIAKNIILSGV-KSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~-gg~G~eiak~L~l~Gv-~~i~l~D~d~ 54 (84)
||.|+|+ |.+|+.++..|+..|+ .++.|+|-..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999998887 5799999755
No 192
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.23 E-value=0.034 Score=42.65 Aligned_cols=36 Identities=17% Similarity=0.410 Sum_probs=32.2
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++++++|+|+|++|..+++.|...|. +++++|.+.
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~ 365 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTK 365 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 567899999999999999999999998 799987653
No 193
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.22 E-value=0.035 Score=39.84 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|.|+|+|-.|+.++.+|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 379999999999999999999998 599999864
No 194
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.22 E-value=0.031 Score=42.02 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=32.2
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.|..++|.|+|+|.+|+.+++.|...|+. +..+|+.
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp~ 148 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDPP 148 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCc
Confidence 57899999999999999999999999995 7778863
No 195
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.21 E-value=0.034 Score=36.29 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=28.9
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+|.|+|+|..|+.+|..|+..| .+++|++.+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH
Confidence 6899999999999999999999 5799997764
No 196
>PLN02928 oxidoreductase family protein
Probab=95.20 E-value=0.032 Score=41.21 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=32.2
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.|..++|.|+|.|.+|.++++.|...|. ++..+|..
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~ 191 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS 191 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence 5888999999999999999999999998 58888763
No 197
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.20 E-value=0.037 Score=40.61 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=30.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++|.|+|+|-+|+.++.+++.+|.. ++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence 5799999999999999999999985 99999754
No 198
>PRK05868 hypothetical protein; Validated
Probab=95.19 E-value=0.039 Score=40.47 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|+|+|+|..|..+|..|...|+. ++++|...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~-v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS-VTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Confidence 4799999999999999999999996 99998753
No 199
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.19 E-value=0.042 Score=36.74 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=31.0
Q ss_pred HhhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.++.++++|+|+ |++|..+++.|+..|. ++++++.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~ 61 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD 61 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 457789999995 9999999999999885 78988764
No 200
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18 E-value=0.035 Score=41.41 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=32.6
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++++|+|+|+|++|.++++.|+..|. +++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 578899999999999999999999998 599998864
No 201
>PLN00106 malate dehydrogenase
Probab=95.18 E-value=0.037 Score=40.65 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=31.6
Q ss_pred hcCcEEEEcC-ChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593 19 RATKILLIGV-EGVGAEIAKNIILSGV-KSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~-gg~G~eiak~L~l~Gv-~~i~l~D~d~ 54 (84)
...||.|+|+ |.+|+.++..|+..+. .++.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4568999998 9999999999998887 5799999766
No 202
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.17 E-value=0.037 Score=39.97 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=33.3
Q ss_pred HhhcCcEEEEcCCh-hHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEG-VGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg-~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.++.++|+|+|.|+ +|..++..|...|. .+++++...
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t 193 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRT 193 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCc
Confidence 46788999999999 99999999999999 899998744
No 203
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.17 E-value=0.037 Score=42.02 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=32.4
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
+...+|+|+|+|.+|..+++.+...|. +++++|.+..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~ 236 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPI 236 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChh
Confidence 467899999999999999999999999 5888887644
No 204
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.17 E-value=0.032 Score=41.90 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=32.2
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.+..++|.|+|+|.+|..+++.|...|+. +..+|+.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp~ 148 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDPP 148 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCc
Confidence 57889999999999999999999999995 7788863
No 205
>PRK07588 hypothetical protein; Provisional
Probab=95.17 E-value=0.04 Score=40.15 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=29.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|+|||+|..|..+|..|...|+. +++++...
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~-v~v~E~~~ 33 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHE-PTLIERAP 33 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCc-eEEEeCCC
Confidence 3799999999999999999999996 99998653
No 206
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.12 E-value=0.041 Score=42.23 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=31.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
....|+|||+|..|..+|..|...|+. ++++|...
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~-v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP-VVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence 456899999999999999999999995 88988654
No 207
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.11 E-value=0.035 Score=40.47 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=29.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..|+|+|+|..|..+|..|.+.|+. ++|+|...
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~-v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIK-TTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCe-EEEecCCC
Confidence 4699999999999999999999995 99999754
No 208
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.11 E-value=0.03 Score=42.73 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=32.0
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
......+|+|||+|..|-..|+.|...|. ++++++..
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~ 42 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGH-TVVVFERE 42 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecC
Confidence 35567899999999999999999999998 58888753
No 209
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.09 E-value=0.044 Score=38.95 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|.|+|+|.+|+.++.+|...|.. ++++|.+.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHD-VTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCE-EEEEECCH
Confidence 3799999999999999999999985 89998754
No 210
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.08 E-value=0.036 Score=39.68 Aligned_cols=31 Identities=39% Similarity=0.522 Sum_probs=27.9
Q ss_pred EEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 23 ILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 23 vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
|.|+|+|.+|+.++..|+..|..+++++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999886689999976
No 211
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.06 E-value=0.051 Score=37.52 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=29.2
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+|+|||+|..|.+.|..|...|.. ++++|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccC
Confidence 699999999999999999999985 99999754
No 212
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.06 E-value=0.043 Score=40.46 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=32.1
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCcc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGVV 55 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~v 55 (84)
++.+|+|||.|..|.+++..|...|. .+|+++|.+..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 56789999999999999999999887 47999987643
No 213
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.06 E-value=0.04 Score=40.15 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=31.6
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.++.++|.|+|.|.+|.++++.|...|+. +..+|..
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~~ 168 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSRS 168 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 47789999999999999999999999984 7777753
No 214
>PRK12861 malic enzyme; Reviewed
Probab=95.06 E-value=0.026 Score=45.91 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCCcc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVK--SVCLLDSGVV 55 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~--~i~l~D~d~v 55 (84)
++|++.||++.|+|..|..+++.|...|+. +|.++|..-+
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gl 226 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGV 226 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCe
Confidence 578999999999999999999999999996 8999997543
No 215
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.05 E-value=0.046 Score=39.44 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=29.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|.|+|+|..|+.++.+|+..|. +++++|.+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 479999999999999999999997 499998853
No 216
>PRK06194 hypothetical protein; Provisional
Probab=95.04 E-value=0.031 Score=38.74 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=29.6
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++++|.| .|++|.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~ 39 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQ 39 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4567899998 78999999999999998 48888764
No 217
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.04 E-value=0.031 Score=45.42 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=35.7
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCC--cEEEEeCCc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVK--SVCLLDSGV 54 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~--~i~l~D~d~ 54 (84)
++|++.||++.|+|..|..+++.|...|+. +|.++|..-
T Consensus 181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G 221 (752)
T PRK07232 181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG 221 (752)
T ss_pred CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence 578999999999999999999999999995 899999753
No 218
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.04 E-value=0.042 Score=40.18 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=29.6
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCC-CcEEEEeCC
Q psy9593 21 TKILLIGV-EGVGAEIAKNIILSGV-KSVCLLDSG 53 (84)
Q Consensus 21 ~~vlivG~-gg~G~eiak~L~l~Gv-~~i~l~D~d 53 (84)
.+|.|+|+ |.+|+.++..|+..|+ .++.|+|-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 37999999 9999999999998887 679999976
No 219
>PRK06198 short chain dehydrogenase; Provisional
Probab=95.01 E-value=0.03 Score=38.18 Aligned_cols=38 Identities=26% Similarity=0.471 Sum_probs=32.4
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+++++++|.| .|++|..+++.|+..|...+.+++.+.
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~ 41 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA 41 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH
Confidence 46778899998 689999999999999987788887653
No 220
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.00 E-value=0.057 Score=41.43 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=31.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
...|+|||.|.+|+.+|..|++.|.+ +.|+|...+.
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~-V~LvEk~d~~ 41 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLS-VLLCEQDDLA 41 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCe-EEEEecCCCC
Confidence 45799999999999999999999996 9999876553
No 221
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=95.00 E-value=0.041 Score=39.98 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=28.3
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.|+|||+|..|..+|..|...|. +++|+|...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~-~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL-RVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Confidence 38999999999999999999999 599999653
No 222
>PRK07190 hypothetical protein; Provisional
Probab=95.00 E-value=0.046 Score=41.80 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=30.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..|+|||+|.+|..+|-.|.+.|+. +.|+|...
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~-V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLN-TVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCC-EEEEeCCC
Confidence 5799999999999999999999996 89998764
No 223
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=94.98 E-value=0.048 Score=41.82 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
....|+|||+|..|..+|..|.+.|+. ++++|...
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~-v~v~Er~~ 43 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVR-VLVLERWP 43 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 457899999999999999999999995 88888654
No 224
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.98 E-value=0.048 Score=39.25 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=28.4
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+|.|+|+|.+|+.++..|...|. ++++++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCH
Confidence 69999999999999999999995 588998754
No 225
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.96 E-value=0.05 Score=39.95 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=30.3
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+.+|+|||+|..|..+|..|...|+. ++|++...
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~-V~i~E~~~ 35 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWA-VTIIEKAQ 35 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 37899999999999999999999995 99998653
No 226
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.94 E-value=0.044 Score=40.15 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=29.5
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCCc------EEEEeCCc
Q psy9593 21 TKILLIGV-EGVGAEIAKNIILSGVKS------VCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~-gg~G~eiak~L~l~Gv~~------i~l~D~d~ 54 (84)
.||+|+|+ |.+|+.++..|+..|+-. +.|+|-..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPP 41 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCC
Confidence 37999998 999999999999888755 99998753
No 227
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.93 E-value=0.05 Score=38.53 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=28.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+|.|+|+|.+|..+++.|...|. +++++|.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 69999999999999999999997 589998753
No 228
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.93 E-value=0.042 Score=40.33 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=29.5
Q ss_pred cCcEEEEcC-ChhHHHHHHHHHHhCC-C-----cEEEEeC
Q psy9593 20 ATKILLIGV-EGVGAEIAKNIILSGV-K-----SVCLLDS 52 (84)
Q Consensus 20 ~~~vlivG~-gg~G~eiak~L~l~Gv-~-----~i~l~D~ 52 (84)
..||.|+|+ |.+|+.++..|+..|+ + +|.|+|-
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 468999998 9999999999999887 4 6999987
No 229
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=94.91 E-value=0.052 Score=40.65 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
...|+|||+|+.|+.+|..|+..|.+ +.++|...
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~-V~llEr~~ 38 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQ-VLVIERGN 38 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCe-EEEEEcCC
Confidence 36899999999999999999999995 88998654
No 230
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.90 E-value=0.043 Score=40.28 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=31.7
Q ss_pred hhcCcEEEEcC-ChhHHHHHHHHHHhCC-CcEEEEeCCcc
Q psy9593 18 LRATKILLIGV-EGVGAEIAKNIILSGV-KSVCLLDSGVV 55 (84)
Q Consensus 18 l~~~~vlivG~-gg~G~eiak~L~l~Gv-~~i~l~D~d~v 55 (84)
++..||.|+|+ |.+|+.++..|+..+. .++.|+|-+..
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~ 45 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA 45 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC
Confidence 45669999998 9999999999987776 47999998543
No 231
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.89 E-value=0.038 Score=38.20 Aligned_cols=38 Identities=16% Similarity=0.377 Sum_probs=31.8
Q ss_pred HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+.++++++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~ 42 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS 42 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 3457888999998 589999999999999975 8887754
No 232
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.89 E-value=0.064 Score=36.45 Aligned_cols=40 Identities=25% Similarity=0.460 Sum_probs=33.5
Q ss_pred HHHHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 13 PYQSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 13 ~~q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+....+++++++|.| .|++|..+++.|...|.. +.+++.+
T Consensus 4 ~~~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~ 44 (264)
T PRK12829 4 DLLKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVS 44 (264)
T ss_pred hHhhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCC
Confidence 344567889999998 799999999999999985 8888764
No 233
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.89 E-value=0.052 Score=37.07 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=31.8
Q ss_pred HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.++++++++|.| .|++|..+++.|...|. ++.+++...
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~ 46 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKA 46 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH
Confidence 356788999998 79999999999999998 588877643
No 234
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.86 E-value=0.073 Score=31.40 Aligned_cols=39 Identities=23% Similarity=0.503 Sum_probs=29.5
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC--CcEEEE-eCCccccccC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGV--KSVCLL-DSGVVTKEDV 60 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv--~~i~l~-D~d~v~~~nl 60 (84)
||.++|+|.+|..+++.|...|. .++.++ +.+.-...++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~ 42 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAEL 42 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHH
Confidence 68999999999999999999993 457755 6554443333
No 235
>PRK07538 hypothetical protein; Provisional
Probab=94.84 E-value=0.056 Score=39.88 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=29.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|+|||+|..|..+|..|...|+. ++++|...
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 33 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIE-VVVFEAAP 33 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc-EEEEEcCC
Confidence 3799999999999999999999995 99998754
No 236
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.81 E-value=0.086 Score=37.22 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=31.5
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
......|+|||+|+.|...|..|+..|.+ +.++|...
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~-V~liEk~~ 58 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLK-VAVFERKL 58 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCe-EEEEecCC
Confidence 34567899999999999999999999995 88888643
No 237
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=94.79 E-value=0.052 Score=42.90 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=31.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
..|+|||.|.+|+.+|..|+..|.+ +.|+|.+.+.
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~-V~LvE~~d~a 106 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLR-VGLVEREDFS 106 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCE-EEEEeccccC
Confidence 5799999999999999999999995 9999887554
No 238
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.76 E-value=0.066 Score=35.99 Aligned_cols=36 Identities=25% Similarity=0.508 Sum_probs=30.8
Q ss_pred hhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++.+++|.|+ |++|..+++.|...|. ++.++|.+.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 56789999995 9999999999999997 488887654
No 239
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=94.75 E-value=0.063 Score=34.07 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=29.1
Q ss_pred CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+.++|.| .+++|.++++.|+..|-..+.+++..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 3578887 89999999999999999888888776
No 240
>PRK06841 short chain dehydrogenase; Provisional
Probab=94.74 E-value=0.065 Score=36.36 Aligned_cols=36 Identities=31% Similarity=0.528 Sum_probs=30.5
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.+.+++|+|.| .|++|.++++.|+..|.. +.+++.+
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~-Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGAR-VALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 36788999999 699999999999999984 7777654
No 241
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=94.73 E-value=0.052 Score=42.94 Aligned_cols=34 Identities=12% Similarity=0.350 Sum_probs=30.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHH-hCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIIL-SGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l-~Gv~~i~l~D~d 53 (84)
+...|+|||+|..|..+|-.|++ .|+. ++|+|..
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~-v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDIT-TRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCc-EEEEEcC
Confidence 46789999999999999999999 6996 8999864
No 242
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=94.73 E-value=0.068 Score=36.26 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=32.1
Q ss_pred HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..+++++|+|.| .|++|..+++.|+..|. ++.++|.+.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~ 46 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTE 46 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCH
Confidence 356788999998 78999999999999998 688887654
No 243
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.72 E-value=0.063 Score=41.54 Aligned_cols=36 Identities=17% Similarity=0.488 Sum_probs=31.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
+-|++|+|+|.+|.++++.|...|.. ++++|.|.-.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d~~~ 452 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIP-LVVIETSRTR 452 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCC-EEEEECCHHH
Confidence 47999999999999999999999985 8999987543
No 244
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=94.72 E-value=0.045 Score=43.31 Aligned_cols=39 Identities=36% Similarity=0.540 Sum_probs=34.7
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHH-----hCC------CcEEEEeCCc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIIL-----SGV------KSVCLLDSGV 54 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l-----~Gv------~~i~l~D~d~ 54 (84)
++|++.||+++|+|+.|.-+++.|+. .|+ ++|.++|.+-
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~G 366 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKG 366 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCC
Confidence 57889999999999999999999987 477 6899999864
No 245
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.70 E-value=0.042 Score=37.83 Aligned_cols=37 Identities=22% Similarity=0.457 Sum_probs=31.3
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+++++++|.| .|++|.++++.|+..|. +++++|.+.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~ 40 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDA 40 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 36678999998 59999999999999998 588887653
No 246
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.70 E-value=0.051 Score=36.61 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=30.9
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+++.+++|.| .|++|.++++.|+..|. ++.+++.+.
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~ 41 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTE 41 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 35667899998 77999999999999998 688887653
No 247
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=94.68 E-value=0.06 Score=39.80 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=28.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
...|+|||+|+.|+..|..|+..|+. +.++|.
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~-VlvlEk 34 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLD-VLVLEK 34 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCe-EEEEec
Confidence 45799999999999999999999964 777776
No 248
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.68 E-value=0.055 Score=36.93 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=30.9
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
+++++++|.| .|++|.++++.|+..|.. +.++|.+.-
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~ 41 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKPA 41 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCHH
Confidence 5677899998 699999999999999984 778776543
No 249
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.66 E-value=0.061 Score=36.72 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=31.0
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++.++|+|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~ 41 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDP 41 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH
Confidence 46778999999 59999999999999997 477777644
No 250
>PRK06523 short chain dehydrogenase; Provisional
Probab=94.66 E-value=0.055 Score=36.92 Aligned_cols=37 Identities=22% Similarity=0.446 Sum_probs=31.0
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++++++++|.| .|++|.++++.|+..|.. +.+++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCCh
Confidence 46778999998 689999999999999985 77777643
No 251
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.65 E-value=0.07 Score=36.35 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=31.3
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+++++++|.| .|++|.++++.|+..|. ++.+.|.+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCH
Confidence 36778999998 69999999999999998 488887653
No 252
>KOG0685|consensus
Probab=94.62 E-value=0.067 Score=41.59 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=38.5
Q ss_pred cCCCcHHHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 7 TSSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 7 ~~~~~~~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
.+...-.+.++.+++||+|||+|-.|-..|..|...|...++|+..
T Consensus 8 ~~~~~~~~~~~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa 53 (498)
T KOG0685|consen 8 ALSGTGSGLKARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEA 53 (498)
T ss_pred hhcccchhhhccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEe
Confidence 3444456677888999999999999999999999999988888854
No 253
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=94.62 E-value=0.08 Score=39.95 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=29.3
Q ss_pred cCcEEEEcC-ChhHHHHHHHHHHhCCCc------EEEEeCCc
Q psy9593 20 ATKILLIGV-EGVGAEIAKNIILSGVKS------VCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~-gg~G~eiak~L~l~Gv~~------i~l~D~d~ 54 (84)
..||.|+|+ |.+|+.++..|+..|+-. ++|+|-|.
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~ 85 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSER 85 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCc
Confidence 469999999 999999999999999854 66775554
No 254
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=94.62 E-value=0.055 Score=39.64 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=28.0
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCCC------cEEEEeC
Q psy9593 22 KILLIGV-EGVGAEIAKNIILSGVK------SVCLLDS 52 (84)
Q Consensus 22 ~vlivG~-gg~G~eiak~L~l~Gv~------~i~l~D~ 52 (84)
||+|+|+ |.+|+.++..|+..|+- ++.|+|-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 6899999 99999999999998885 4999986
No 255
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.61 E-value=0.07 Score=38.28 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=29.9
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhC-CCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSG-VKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~G-v~~i~l~D~d~ 54 (84)
++.++|+|.| +|++|+++++.|...| ..+++++|.+.
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~ 40 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDE 40 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCCh
Confidence 3567899998 6899999999999887 45788887654
No 256
>PRK13529 malate dehydrogenase; Provisional
Probab=94.56 E-value=0.051 Score=42.86 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=34.9
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHH----hCC------CcEEEEeCCc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIIL----SGV------KSVCLLDSGV 54 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l----~Gv------~~i~l~D~d~ 54 (84)
++|++.||+++|+|+.|.-+++.|+. .|+ ++|.++|.+-
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~G 339 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQG 339 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 57889999999999999999999987 599 5899999863
No 257
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.56 E-value=0.065 Score=44.91 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=34.2
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTK 57 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~ 57 (84)
-..++|+|||+|+.|-++|..|++.|.. ++++|...+++
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~g 419 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITL 419 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEccccccc
Confidence 3678999999999999999999999985 99999865543
No 258
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=94.54 E-value=0.072 Score=35.99 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=30.2
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++++++|.| .|++|.++++.|+..|. ++.+++...
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCch
Confidence 5678999999 58999999999999998 477777543
No 259
>PLN02985 squalene monooxygenase
Probab=94.54 E-value=0.068 Score=41.29 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=32.5
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
+-....|+|||+|..|+.+|..|...|.+ ++++|.+..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~-V~vlEr~~~ 77 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRR-VHVIERDLR 77 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCe-EEEEECcCC
Confidence 34556899999999999999999999985 999997643
No 260
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=94.52 E-value=0.069 Score=36.42 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=30.7
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++.++++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~ 41 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRS 41 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCc
Confidence 46778899998 68999999999999997 48888764
No 261
>PLN02256 arogenate dehydrogenase
Probab=94.50 E-value=0.075 Score=38.60 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=31.7
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+-+..+|.|+|+|.+|..+++.|...|. +++.+|.+.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~ 69 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSD 69 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECcc
Confidence 4466799999999999999999999886 588888764
No 262
>PRK06996 hypothetical protein; Provisional
Probab=94.49 E-value=0.063 Score=39.46 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=29.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d~ 54 (84)
..|+|+|+|.+|..+|-.|...|+ -+++++|...
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 579999999999999999999986 2599998764
No 263
>PLN02253 xanthoxin dehydrogenase
Probab=94.47 E-value=0.072 Score=36.86 Aligned_cols=36 Identities=31% Similarity=0.566 Sum_probs=30.5
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++++++++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~ 51 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQ 51 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 56778899998 78999999999999997 48888754
No 264
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=94.46 E-value=0.056 Score=42.65 Aligned_cols=39 Identities=31% Similarity=0.385 Sum_probs=34.7
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHH----HhCC------CcEEEEeCCc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNII----LSGV------KSVCLLDSGV 54 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~----l~Gv------~~i~l~D~d~ 54 (84)
++|++.||++.|+|+.|.-+++.|+ ..|+ ++|.++|.+-
T Consensus 293 ~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G 341 (559)
T PTZ00317 293 VPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG 341 (559)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 5789999999999999999999988 4799 7899999863
No 265
>PLN02494 adenosylhomocysteinase
Probab=94.45 E-value=0.074 Score=41.25 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=32.8
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
+..++|+|+|.|.+|..+++.+...|. +++++|.+..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~ 288 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI 288 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 578899999999999999999999999 5888877654
No 266
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.43 E-value=0.084 Score=40.33 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=30.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
..|+|||.|.+|+.+|..|++.|.+ +.|+|...+.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~-V~LlEk~d~~ 41 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLK-VLLCEKDDLA 41 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCc-EEEEECCCCC
Confidence 5799999999999999999999985 8999876543
No 267
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.41 E-value=0.085 Score=37.18 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=27.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG 53 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d 53 (84)
+|.|+|+|.+|..++..|...|.. +++.+|.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~ 34 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHN 34 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 699999999999999999999963 57777764
No 268
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.41 E-value=0.09 Score=35.96 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=27.5
Q ss_pred cEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+|.|+| +|.+|+.+++.|+..| .++++++.+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH
Confidence 699997 8999999999999999 4688887643
No 269
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=94.41 E-value=0.13 Score=36.30 Aligned_cols=38 Identities=21% Similarity=0.486 Sum_probs=32.4
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.......|+|||+|+.|...|..|+..|.+ +.+++...
T Consensus 17 ~~~~~~DVvIVGgGpAGL~aA~~la~~G~~-V~vlEk~~ 54 (254)
T TIGR00292 17 LDYAESDVIIVGAGPSGLTAAYYLAKNGLK-VCVLERSL 54 (254)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 344678999999999999999999999975 88887754
No 270
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.41 E-value=0.072 Score=35.42 Aligned_cols=37 Identities=24% Similarity=0.485 Sum_probs=30.8
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++.++++|.| .|++|..+++.|...|.. +.+++.+.
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~~ 41 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRGA 41 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCCh
Confidence 35678999998 699999999999999985 88887643
No 271
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=94.40 E-value=0.076 Score=39.06 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=28.2
Q ss_pred EEEEcCChhHHHHHHHH--HHhCCCcEEEEeCCccc
Q psy9593 23 ILLIGVEGVGAEIAKNI--ILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 23 vlivG~gg~G~eiak~L--~l~Gv~~i~l~D~d~v~ 56 (84)
|+|||+|..|..+|..| ...|. ++.++|...-.
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccc
Confidence 78999999999999999 77776 59999876544
No 272
>PRK05442 malate dehydrogenase; Provisional
Probab=94.40 E-value=0.068 Score=39.29 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=29.2
Q ss_pred cCcEEEEcC-ChhHHHHHHHHHHhCC-C-----cEEEEeC
Q psy9593 20 ATKILLIGV-EGVGAEIAKNIILSGV-K-----SVCLLDS 52 (84)
Q Consensus 20 ~~~vlivG~-gg~G~eiak~L~l~Gv-~-----~i~l~D~ 52 (84)
..||.|+|+ |.+|+.++..|+..|+ + +|.|+|-
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 459999998 9999999999998887 4 6999986
No 273
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=94.39 E-value=0.12 Score=36.63 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=31.0
Q ss_pred HHHHHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 13 PYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 13 ~~q~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+.+....+..|+|+|+|+.|...|+.|+..|.+ +.+++..
T Consensus 10 ~~l~~~~~~DV~IVGaGpaGl~aA~~La~~g~k-V~v~E~~ 49 (230)
T PF01946_consen 10 EDLYDYLEYDVAIVGAGPAGLTAAYYLAKAGLK-VAVIERK 49 (230)
T ss_dssp HHHHHHTEESEEEE--SHHHHHHHHHHHHHTS--EEEEESS
T ss_pred HHHHhhccCCEEEECCChhHHHHHHHHHHCCCe-EEEEecC
Confidence 334456778999999999999999999999996 8888764
No 274
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.38 E-value=0.069 Score=38.83 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=28.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhC--CCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSG--VKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~G--v~~i~l~D~d~ 54 (84)
..|+|||+|..|..+|..|.+.| + +++|+|...
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~-~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHL-PVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCC-EEEEEeCCC
Confidence 46999999999999999999997 5 589998754
No 275
>PLN02463 lycopene beta cyclase
Probab=94.37 E-value=0.063 Score=40.88 Aligned_cols=37 Identities=22% Similarity=0.519 Sum_probs=31.9
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+.....|+|||+|..|..+|..|+..|++ +.++|...
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~-V~liE~~~ 61 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLS-VCCIDPSP 61 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCe-EEEeccCc
Confidence 44456899999999999999999999985 99998854
No 276
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.36 E-value=0.075 Score=40.33 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=32.8
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
+..++|+|+|+|.+|..+++.+...|.. ++++|.|..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp~ 229 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDPI 229 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCChh
Confidence 5788999999999999999999999995 888876654
No 277
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.34 E-value=0.071 Score=38.77 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=32.0
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..|..++|.|+|.|.+|.++++.|...|+ ++..+|..
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~ 154 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS 154 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 46889999999999999999998887788 48888864
No 278
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.33 E-value=0.08 Score=41.02 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=33.2
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
.+..++|+|+|.|.+|..+++.|...|. +++++|.+..
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~ 288 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPI 288 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 4789999999999999999999999999 5888876643
No 279
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.33 E-value=0.081 Score=39.30 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=30.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
...+++|+|+|.+|..+++.|...|.. ++++|.+.
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~ 264 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDP 264 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCH
Confidence 468899999999999999999998885 89997764
No 280
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.33 E-value=0.064 Score=36.03 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=30.2
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.+++++|+|.| .|++|.++++.|...|. ++.+++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678899998 79999999999999997 47777654
No 281
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.32 E-value=0.078 Score=40.75 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=30.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
.+|.|||+|-+|+.++.+|+.+|. .++++|.+.-
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHH
Confidence 479999999999999999999998 5999988543
No 282
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.31 E-value=0.087 Score=35.57 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=30.7
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+++++++|.| .|++|.++++.|...|. ++.++|.+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~ 40 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINA 40 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 35667899999 59999999999999997 588887653
No 283
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.30 E-value=0.087 Score=35.30 Aligned_cols=36 Identities=31% Similarity=0.575 Sum_probs=29.8
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++++|+|.| .|++|..+++.|...|. ++.+++.+.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~ 39 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNE 39 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 5678999998 58899999999999998 477776643
No 284
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.29 E-value=0.12 Score=29.43 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=25.4
Q ss_pred EEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 25 LIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 25 ivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
|||+|..|...+..|...|. +++|+|...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecCc
Confidence 79999999999999999999 699998754
No 285
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.29 E-value=0.1 Score=38.78 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=30.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCcc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGVV 55 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~v 55 (84)
++|+|||+|..|.++|..|.+.|- .+++|+|....
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 379999999999999999998874 37999997653
No 286
>PRK05875 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.068 Score=36.84 Aligned_cols=36 Identities=19% Similarity=0.487 Sum_probs=30.8
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.+++++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~ 40 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRN 40 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 36678999999 58999999999999998 58888764
No 287
>PRK07680 late competence protein ComER; Validated
Probab=94.29 E-value=0.091 Score=37.01 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=28.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGV---KSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d~ 54 (84)
+|.|+|+|.+|+.++..|...|. ..++++|.+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~ 37 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP 37 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH
Confidence 68999999999999999999984 4688888754
No 288
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.28 E-value=0.088 Score=39.71 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=30.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...+|+|+|.|..|.+.|..|.+.|. +++++|..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 45789999999999999999999998 59999874
No 289
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.27 E-value=0.077 Score=40.87 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=29.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCC-CcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGV-KSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv-~~i~l~D~d~ 54 (84)
...|+|||+|.+|+.+|..|...+- .+|+++|.+.
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 4579999999999999999998643 3799999764
No 290
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.27 E-value=0.076 Score=38.86 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=29.3
Q ss_pred cCcEEEEcC-ChhHHHHHHHHHHhCCC------cEEEEeCC
Q psy9593 20 ATKILLIGV-EGVGAEIAKNIILSGVK------SVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~-gg~G~eiak~L~l~Gv~------~i~l~D~d 53 (84)
..+|+|+|+ |.+|+.++..|+..++- ++.++|-.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~ 42 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIP 42 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcC
Confidence 357999998 99999999999987764 79999873
No 291
>PRK07856 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.094 Score=35.72 Aligned_cols=36 Identities=28% Similarity=0.547 Sum_probs=30.2
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++.++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 5678899998 68999999999999998 477877653
No 292
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.25 E-value=0.089 Score=37.65 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=28.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+|.++|+|..|+.++++|...|. +++++|.+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCH
Confidence 79999999999999999999997 488888753
No 293
>PRK08703 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.06 Score=36.32 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=30.5
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
|+.++++|.| .|++|.++++.|...|.. +.+++...
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~-V~~~~r~~ 40 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGAT-VILVARHQ 40 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeCCh
Confidence 5678999998 699999999999999984 88887654
No 294
>PRK07035 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.093 Score=35.60 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=30.9
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.+++++|+|.| .|++|.++++.|...|. ++.++|.+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36678899998 89999999999999997 68888764
No 295
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.22 E-value=0.082 Score=41.71 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=30.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...+|+|||+|..|-..|..|.+.|.. ++++|..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 467999999999999999999999986 9999864
No 296
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=94.22 E-value=0.085 Score=36.21 Aligned_cols=35 Identities=29% Similarity=0.641 Sum_probs=29.6
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++++|.| .|++|.++++.|+..|.. +.++|..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~ 38 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGAR-VAVLDKS 38 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5678899998 689999999999999985 7777754
No 297
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.21 E-value=0.093 Score=35.97 Aligned_cols=34 Identities=15% Similarity=0.361 Sum_probs=27.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGV---KSVCLLDS 52 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~ 52 (84)
+..||.|+|+|..|..+++.|...|. ..+.+++.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 35789999999999999999998873 34666654
No 298
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.21 E-value=0.088 Score=35.08 Aligned_cols=36 Identities=33% Similarity=0.553 Sum_probs=30.0
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+.+++|+|.| .|++|.++++.|...|.. +.+++.+.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~~ 39 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSNE 39 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCh
Confidence 3457899998 699999999999999986 88887653
No 299
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.21 E-value=0.074 Score=38.73 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=31.2
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
..|..++|.|+|.|.+|.++++.|...|.. +..+|.
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~ 179 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQL 179 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECC
Confidence 368999999999999999999999988884 666664
No 300
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=94.20 E-value=0.096 Score=39.75 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=31.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...+|+|||+|.-|-.++..|..+|+..+.++|..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~ 41 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKR 41 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 45789999999999999999999999988888875
No 301
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.18 E-value=0.079 Score=41.26 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=24.3
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
.+||+|||+|..|-..+|+|...|+. +++++.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~-~~~fE~ 32 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLE-VTCFEK 32 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-E-EEEEES
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC-CeEEec
Confidence 37999999999999999999999994 777763
No 302
>PRK08226 short chain dehydrogenase; Provisional
Probab=94.18 E-value=0.082 Score=36.11 Aligned_cols=37 Identities=30% Similarity=0.547 Sum_probs=31.4
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++.+++++|.| .|++|.++++.|+..|.. +.+++...
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~~ 40 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDISP 40 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCH
Confidence 46778999998 889999999999999985 88887653
No 303
>PRK07574 formate dehydrogenase; Provisional
Probab=94.18 E-value=0.077 Score=39.93 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=33.0
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..|..++|.|+|.|.+|.++++.|...|+. +..+|...
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~~ 225 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRHR 225 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCCC
Confidence 358889999999999999999999999984 88888643
No 304
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.18 E-value=0.092 Score=37.56 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=31.0
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEe
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLD 51 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D 51 (84)
.++.++|.|-|.|.+|..+++.|...|.+-+.+.|
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 46789999999999999999999999987665766
No 305
>PRK07060 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.11 Score=34.97 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=30.0
Q ss_pred hhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++++|.|+ |++|..+++.|...|. ++.+++.+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~ 42 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARN 42 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56789999996 8999999999999998 58888764
No 306
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.093 Score=35.71 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=29.5
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++++|.| .|++|.++++.|+..|.. +.+++..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~-v~~~~r~ 39 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAK-VVVGARR 39 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5667899998 689999999999999984 8877654
No 307
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.092 Score=35.87 Aligned_cols=36 Identities=36% Similarity=0.567 Sum_probs=30.6
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++++++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~ 40 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALADLD 40 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 46778899998 689999999999999985 8887764
No 308
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.11 Score=35.32 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=29.8
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+.+++|+|.| .|++|.++++.|+..|.. +++++.+
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~-Vi~~~r~ 42 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAK-VVLASRR 42 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5678999998 699999999999999984 7777654
No 309
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.16 E-value=0.084 Score=35.51 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=30.0
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
.|..++++|+|-|-+|.-+|+.|...|.. +++.|-|.+.
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~DPi~ 58 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEIDPIR 58 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-SSHHH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEECChHH
Confidence 46778999999999999999999999974 9999988765
No 310
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=94.15 E-value=0.099 Score=34.13 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=26.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
+|+|||.|..|..+|+.|...|.. ++++|.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~-v~ii~~ 30 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK-VLIIEK 30 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE-EEEESS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe-EEEEec
Confidence 589999999999999999999996 777754
No 311
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.15 E-value=0.088 Score=40.75 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=29.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
-++|.|||+|..|+.++.+|+.+|.. ++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCC
Confidence 35799999999999999999999985 8999865
No 312
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.14 E-value=0.053 Score=38.40 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=31.5
Q ss_pred HHHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 15 QSRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 15 q~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...+.+++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3456778999998 69999999999999997 57787764
No 313
>KOG4169|consensus
Probab=94.11 E-value=0.061 Score=38.57 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=30.4
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
+..++++++| +||+|-+++|.|...|+..+.+.|.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~ 38 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS 38 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh
Confidence 4578888886 9999999999999999998777665
No 314
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.11 E-value=0.1 Score=36.37 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=29.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCC--CcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGV--KSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv--~~i~l~D~d~ 54 (84)
.+|.|+|+|.+|+.++..|...|. ..+.++|.+.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~ 38 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP 38 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence 579999999999999999999984 4688888753
No 315
>PRK10015 oxidoreductase; Provisional
Probab=94.11 E-value=0.097 Score=39.32 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..|+|||+|..|+..|..|+..|.. +.++|...
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~-VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLD-VLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCe-EEEEecCC
Confidence 5899999999999999999999996 89998654
No 316
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.10 E-value=0.091 Score=40.67 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=29.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++|.|||+|-.|+.++.+|+.+|.. ++++|.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~-V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHT-VLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence 5799999999999999999999985 99998654
No 317
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=94.10 E-value=0.1 Score=36.07 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=30.7
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.++++.++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46678899998 68999999999999998 48888764
No 318
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.10 E-value=0.1 Score=37.88 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=30.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..+|+|+|.|-+|.|+|..|...|+.++++++..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 5799999999999999999999999889999753
No 319
>PRK08589 short chain dehydrogenase; Validated
Probab=94.10 E-value=0.064 Score=37.21 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=30.3
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++.++++|.| .+++|.++++.|+..|. ++.+++.+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc
Confidence 46678899998 58999999999999997 47777765
No 320
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.09 E-value=0.1 Score=38.71 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=28.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++|+|+|+|.+|..+++.|...|.. ++++|.+.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~~ 33 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENND-VTVIDTDE 33 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc-EEEEECCH
Confidence 3799999999999999999999984 88888743
No 321
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=94.09 E-value=0.095 Score=35.82 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=30.4
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++++++|+|.| .|++|.++++.|+..|.. +.+++.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~ 48 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG 48 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 46788999998 789999999999999985 6676654
No 322
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=94.08 E-value=0.077 Score=39.63 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=28.0
Q ss_pred cEEEEcCChhHHHHHHHHHH----hCCCcEEEEeCC
Q psy9593 22 KILLIGVEGVGAEIAKNIIL----SGVKSVCLLDSG 53 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l----~Gv~~i~l~D~d 53 (84)
.|+|||+|.+|..+|..|+. .|++ ++++|..
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~-v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLK-VLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCe-EEEEeCC
Confidence 59999999999999999998 7985 9999873
No 323
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.08 E-value=0.1 Score=35.75 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=29.8
Q ss_pred HhhcCcEEEEcC-C-hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGV-E-GVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~-g-g~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.+++++++|.|+ | |+|.++++.|+..|.. +.+.|.+
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~~ 51 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDIH 51 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeCC
Confidence 456789999996 5 7999999999999985 8887753
No 324
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.08 E-value=0.1 Score=36.84 Aligned_cols=34 Identities=12% Similarity=0.333 Sum_probs=28.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d 53 (84)
..+|.++|+|..|..++++|...|+ .+++++|..
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~ 39 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRS 39 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence 4589999999999999999999983 567777753
No 325
>PRK12746 short chain dehydrogenase; Provisional
Probab=94.07 E-value=0.057 Score=36.62 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=27.9
Q ss_pred HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEE
Q psy9593 16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLL 50 (84)
Q Consensus 16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~ 50 (84)
+++++++++|.| .|++|.++++.|...|.. +.+.
T Consensus 2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i~ 36 (254)
T PRK12746 2 KNLDGKVALVTGASRGIGRAIAMRLANDGAL-VAIH 36 (254)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence 346678999998 899999999999999875 5443
No 326
>PLN03139 formate dehydrogenase; Provisional
Probab=94.06 E-value=0.078 Score=39.93 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=33.3
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..|..++|.|+|.|.+|..+++.|...|+. +..+|...
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~ 232 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLK 232 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCC
Confidence 368999999999999999999999999985 77788653
No 327
>PRK06500 short chain dehydrogenase; Provisional
Probab=94.06 E-value=0.098 Score=35.21 Aligned_cols=36 Identities=28% Similarity=0.572 Sum_probs=30.1
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++++++++|.| .|++|.++++.|...|. ++.+++.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~ 39 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRD 39 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence 35678899998 69999999999999998 47777654
No 328
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.06 E-value=0.097 Score=39.05 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=30.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...|+|||.|..|.+.|..|+..|.+ ++++|.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~-V~lie~~ 35 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWR-VALIEQS 35 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCe-EEEEcCC
Confidence 46899999999999999999999985 9999975
No 329
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.05 E-value=0.11 Score=35.41 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=31.6
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++.++++|.| .|++|..+++.|+..|. ++.+++.+.
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~ 45 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNA 45 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCH
Confidence 36788999998 78999999999999998 588887753
No 330
>PRK05717 oxidoreductase; Validated
Probab=94.05 E-value=0.11 Score=35.47 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=29.8
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++.++++|.| .|++|.++++.|+..|. ++.++|...
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~ 44 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDR 44 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 4567899998 69999999999999997 588887543
No 331
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.01 E-value=0.099 Score=40.48 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=30.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...+|+|+|+|..|-..+..|...|.. ++++|..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 467999999999999999999999985 9999854
No 332
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.00 E-value=0.11 Score=41.17 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=32.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
+.+|+|+|+|.+|..+++.|...|+. ++++|.|.-.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~ 435 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPDH 435 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHHH
Confidence 57999999999999999999999995 8999887553
No 333
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.98 E-value=0.097 Score=37.08 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=28.3
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+|.|+|+|.+|+.++.+|...|. +++++|.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 58999999999999999999997 588888653
No 334
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.11 Score=35.23 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=29.7
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++++|.| .|++|.++++.|+..|.. +.+++.+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~-v~~~~r~ 40 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAK-VVVADRD 40 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCC
Confidence 5678999998 689999999999999974 8888754
No 335
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=93.97 E-value=0.11 Score=41.27 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=30.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..++|+|||+|..|.+.|..|...|.. ++++|...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 357999999999999999999999985 99998653
No 336
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.96 E-value=0.096 Score=39.45 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=32.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV 60 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl 60 (84)
..+|.|+|+|-+|..++.+|+..|. +++.+|.+.-..+.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l 42 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTI 42 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence 3689999999999999999999996 588888754433333
No 337
>PRK04148 hypothetical protein; Provisional
Probab=93.95 E-value=0.089 Score=34.34 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=29.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
++.+|+.+|+| .|.+++..|...|. .++-+|-+.-
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH
Confidence 44789999999 99999999999997 5888886443
No 338
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=93.95 E-value=0.11 Score=36.83 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=28.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|.|+|+|.+|..++++|...|. ++.++|.+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 479999999999999999999997 488888653
No 339
>PRK06196 oxidoreductase; Provisional
Probab=93.95 E-value=0.15 Score=36.22 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=29.8
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.++.++|+|.| .|++|.++++.|+..|.. +.+++.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R~ 59 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPARR 59 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 45678899998 589999999999999985 7777654
No 340
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=93.94 E-value=0.11 Score=36.54 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=28.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d 53 (84)
.+.+|.|+|+|-+|+.+++.|...|. .++.+.|.+
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~ 39 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPS 39 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCC
Confidence 45689999999999999999999884 347777654
No 341
>PRK06398 aldose dehydrogenase; Validated
Probab=93.92 E-value=0.076 Score=36.56 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=30.0
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.++.++++|.| .+++|.++++.|+..|. ++.+++.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~ 39 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIK 39 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 46678899998 68999999999999997 47777654
No 342
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=93.92 E-value=0.12 Score=35.44 Aligned_cols=35 Identities=23% Similarity=0.546 Sum_probs=29.7
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++++|.| .+++|.++++.|+..|.. +.++|.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~ 39 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGAR-VAVLERS 39 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5678899998 689999999999999985 7777764
No 343
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=93.91 E-value=0.096 Score=38.05 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=32.2
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..|..++|.|+|.|.+|.++++.+.-.|.. +.-+|+.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~~ 177 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYSTS 177 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECCC
Confidence 478999999999999999999999888884 7777763
No 344
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.91 E-value=0.12 Score=37.45 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..+|+|+|+|..|.+++..|...|. +++++|...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~ 51 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLP 51 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 4689999999999999999999997 599998753
No 345
>PRK06197 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.088 Score=37.14 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=30.7
Q ss_pred HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..+++++|+|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~ 49 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRN 49 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356788999998 69999999999999998 47777654
No 346
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.87 E-value=0.12 Score=37.19 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=29.4
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++++|+|.| +|.+|+++++.|+..|.. ++.+|.+.
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~-V~~~~r~~ 38 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAE-VYGYSLDP 38 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCE-EEEEeCCC
Confidence 3568999999 588999999999999964 77777543
No 347
>PRK09072 short chain dehydrogenase; Provisional
Probab=93.87 E-value=0.11 Score=35.59 Aligned_cols=35 Identities=26% Similarity=0.614 Sum_probs=29.7
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++.+++|.| .|++|.++++.|...|.. +++++.+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~-V~~~~r~ 38 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGAR-LLLVGRN 38 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECC
Confidence 4567899998 699999999999999974 8888754
No 348
>PRK05876 short chain dehydrogenase; Provisional
Probab=93.85 E-value=0.082 Score=36.97 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=29.8
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++.+.++|.| .|++|.++++.|+..|.. +.+.|.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGAR-VVLGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5677899998 899999999999999985 7777754
No 349
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.85 E-value=0.13 Score=34.83 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=30.1
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+.+++++|.| .|++|.++++.|+.-|. ++.++|.+.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~ 39 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTA 39 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCH
Confidence 4568899998 68999999999999998 588887543
No 350
>PRK06545 prephenate dehydrogenase; Validated
Probab=93.83 E-value=0.11 Score=38.20 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=28.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|.|+|+|-+|..+++.|...|. .+.++|.+.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~ 33 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDP 33 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCC
Confidence 369999999999999999999997 477777654
No 351
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.13 Score=35.32 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=29.9
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+.+++++|.| .|++|.++++.|...|. ++.+++.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678899998 67899999999999998 68888764
No 352
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.78 E-value=0.14 Score=36.43 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=29.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+..+|+|+|+|++|...+..+...|...+.++|.+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~ 178 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN 178 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 45689999999999999988888999888777654
No 353
>PRK08628 short chain dehydrogenase; Provisional
Probab=93.78 E-value=0.12 Score=35.19 Aligned_cols=36 Identities=19% Similarity=0.449 Sum_probs=29.5
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+|++++++|.| .|++|.++++.|+..|.. +.+++.+
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~ 40 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRS 40 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCC
Confidence 36778999998 789999999999999985 6666543
No 354
>PRK06138 short chain dehydrogenase; Provisional
Probab=93.78 E-value=0.12 Score=34.76 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=29.0
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~ 38 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRD 38 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCC
Confidence 5678999998 68999999999999996 47777644
No 355
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=93.78 E-value=0.12 Score=35.25 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=30.1
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++.+++|+|.| .+++|.++++.|+..|.. +.++|.+
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r~ 44 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDIN 44 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence 36788999998 899999999999999985 6666653
No 356
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.76 E-value=0.13 Score=40.51 Aligned_cols=36 Identities=11% Similarity=0.451 Sum_probs=31.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
+.+|+|+|.|.+|..+++.|...|+. ++++|.|.-.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~ 435 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDISA 435 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHHH
Confidence 56999999999999999999999995 8999887543
No 357
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.75 E-value=0.13 Score=36.63 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=29.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d~ 54 (84)
+.+|.++|+|-+|..++++|...|. .++.++|.+.
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~ 39 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV 39 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH
Confidence 4589999999999999999999985 3588888643
No 358
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.75 E-value=0.11 Score=43.12 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=31.1
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..++|+|||+|+.|...|..|.+.|.. ++++|..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeC
Confidence 478999999999999999999999985 9999865
No 359
>PTZ00367 squalene epoxidase; Provisional
Probab=93.75 E-value=0.12 Score=40.56 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=30.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
...|+|||+|..|+.+|..|...|. +++++|.+.
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGR-KVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCC-EEEEEcccc
Confidence 3579999999999999999999998 599998765
No 360
>PRK07024 short chain dehydrogenase; Provisional
Probab=93.73 E-value=0.15 Score=34.92 Aligned_cols=33 Identities=21% Similarity=0.496 Sum_probs=28.2
Q ss_pred cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35788988 89999999999999998 58888764
No 361
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=93.73 E-value=0.091 Score=39.89 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=31.9
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEE
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLL 50 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~ 50 (84)
..++.++|+|||.|..|..++-.|...| +++++.
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~g-a~vt~~ 204 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEVG-ASVTLS 204 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhcC-CeeEEE
Confidence 5788999999999999999999999999 889997
No 362
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.72 E-value=0.085 Score=36.81 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=29.8
Q ss_pred HhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++.++|.|++ |+|.++++.|+..|.. +.+.+.+
T Consensus 3 ~l~~k~~lITGas~~~GIG~aia~~la~~G~~-vil~~r~ 41 (262)
T PRK07984 3 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQN 41 (262)
T ss_pred ccCCCEEEEeCCCCCccHHHHHHHHHHHCCCE-EEEEecc
Confidence 3667889999985 7999999999999985 7777654
No 363
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=93.72 E-value=0.11 Score=38.14 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=32.7
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.|..++|.|+|.|.+|+.+++-|...|++ +..+|+-
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~ 174 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPY 174 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCC
Confidence 67799999999999999999999999996 8888873
No 364
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=93.72 E-value=0.13 Score=36.91 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=28.5
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+|.++|+|..|+.++.+|...|. ++.++|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 69999999999999999999996 488888764
No 365
>PRK10537 voltage-gated potassium channel; Provisional
Probab=93.68 E-value=0.12 Score=38.89 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=31.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
++.|++|+|.|.+|.++++.|...|. .++++|+|.++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~ 275 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLE 275 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhh
Confidence 46789999999999999999998887 58888887553
No 366
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.67 E-value=0.14 Score=35.52 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=29.7
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
|+++.++|.| .+|+|.++++.|+..|. ++.++|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN 41 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5677889998 57999999999999998 48888765
No 367
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.67 E-value=0.13 Score=36.76 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=28.4
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+|.+||+|.+|..++++|...|. .++++|.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~ 33 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQ 33 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 69999999999999999999997 488888753
No 368
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=93.64 E-value=0.14 Score=38.88 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=30.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...+|+|||+|..|.+.|..|...|.. ++++|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 456999999999999999999999985 9999864
No 369
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.64 E-value=0.13 Score=38.42 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=32.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV 60 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl 60 (84)
+|.|+|+|-+|..++.+|+..|. +++.+|.+.-....+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l 39 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKL 39 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHh
Confidence 69999999999999999999998 489998865544445
No 370
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.63 E-value=0.12 Score=38.56 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=31.4
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++.++|+|+|.|++|..+++.|...|.. +++.|.+.
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~-V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGAN-VTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCCC
Confidence 4578899999999999999999999984 88888654
No 371
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=93.63 E-value=0.13 Score=35.27 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=29.8
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.|.+++++|.| .|++|.++++.|+..|.. +.++|.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~-v~~~~~~ 42 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGAN-VVNADIH 42 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 36778899998 789999999999999984 6676654
No 372
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.63 E-value=0.12 Score=43.31 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=31.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..++|+|||+|+.|.++|..|.+.|. +++|+|...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 56799999999999999999999998 599998653
No 373
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.62 E-value=0.13 Score=37.64 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=31.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
.+|+|+|+|++|--.+..+...|..++.++|.+.-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 37999999999999999999999999999977443
No 374
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=93.61 E-value=0.15 Score=34.38 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=29.6
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
|++++++|.| .|++|.++++.|...|. ++.++|.+.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~ 37 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNR 37 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCH
Confidence 4578899998 78999999999999987 477776543
No 375
>PLN02477 glutamate dehydrogenase
Probab=93.59 E-value=0.12 Score=39.21 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=31.9
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.++.++|+|.|.|.+|..+++.|...|.+-+.+.|.+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4677999999999999999999999998755577754
No 376
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.57 E-value=0.11 Score=34.81 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=28.6
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEE-eCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLL-DSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~-D~d 53 (84)
|++++++|.| .|++|.++++.|+..|.. +.++ +.+
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r~ 39 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDIN 39 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCC
Confidence 5677899998 699999999999999986 5555 554
No 377
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=93.57 E-value=0.14 Score=36.65 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=29.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|.++|+|-.|..++.+|...|. +++++|.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 379999999999999999999996 589988754
No 378
>PRK06932 glycerate dehydrogenase; Provisional
Probab=93.57 E-value=0.1 Score=37.94 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=31.2
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
..|..++|.|+|.|.+|.++++.|...|+. +..+|.
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~ 178 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEH 178 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECC
Confidence 368999999999999999999999988885 666664
No 379
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=93.55 E-value=0.15 Score=34.65 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=29.7
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++.++++|.| .|++|.++++.|+..|. ++.+.|.+
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~ 42 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDIT 42 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCC
Confidence 5677899998 78999999999999997 57787754
No 380
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.52 E-value=0.14 Score=34.54 Aligned_cols=35 Identities=31% Similarity=0.520 Sum_probs=29.1
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++|+|.| .|++|.++++.|...|. ++.+++..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4567899998 79999999999999997 47777654
No 381
>PRK08017 oxidoreductase; Provisional
Probab=93.51 E-value=0.18 Score=34.16 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=26.9
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 21 TKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 21 ~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++|+|.|+ |++|.++++.|...|. ++.+++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~ 35 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRK 35 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 47999997 9999999999999997 47776654
No 382
>PRK12831 putative oxidoreductase; Provisional
Probab=93.51 E-value=0.14 Score=38.94 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=30.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...+|+|||+|..|.+.|..|.+.|.. ++++|..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~-V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYD-VTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCe-EEEEecC
Confidence 467899999999999999999999985 8999853
No 383
>PRK06114 short chain dehydrogenase; Provisional
Probab=93.51 E-value=0.12 Score=35.30 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=30.1
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++.+.++|.| .+++|.++++.|+..|. ++.++|..
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~ 41 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLR 41 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46678899998 78999999999999998 57777753
No 384
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.50 E-value=0.16 Score=37.93 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=30.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
..|+|||+|..|...|..|+..|. ++.++|.+.+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~-~v~lie~~~~ 35 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGL-KVALVEKEYL 35 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 469999999999999999999998 5999997655
No 385
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.48 E-value=0.16 Score=34.12 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=29.1
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++++|.| .|++|.++++.|+..|.. +.+++.+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r~ 40 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDGL 40 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeCC
Confidence 5678899998 699999999999999985 6666654
No 386
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.48 E-value=0.15 Score=34.85 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=30.6
Q ss_pred hhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++++++|.|+ +++|.++++.|+..|. ++.+++.+.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~ 41 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDA 41 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH
Confidence 56788999985 8999999999999998 688887643
No 387
>PLN02572 UDP-sulfoquinovose synthase
Probab=93.48 E-value=0.12 Score=39.04 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=31.3
Q ss_pred HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
.++++.+|+|.| +|.+|+++++.|+..|. +++++|.
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 467788999998 79999999999999997 4888874
No 388
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.48 E-value=0.14 Score=38.30 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=29.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++|+|+|.|+.|..+++.|...|. ++++.|...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~ 33 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND 33 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 479999999999999999999998 599998653
No 389
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=93.45 E-value=0.15 Score=39.46 Aligned_cols=34 Identities=12% Similarity=0.279 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHh-CCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILS-GVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~-Gv~~i~l~D~d 53 (84)
...|+|||.|-+|+.+|..|+.. +..+++++|..
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~ 79 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERR 79 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecC
Confidence 46999999999999999999986 55689999975
No 390
>PRK06940 short chain dehydrogenase; Provisional
Probab=93.45 E-value=0.15 Score=35.53 Aligned_cols=32 Identities=31% Similarity=0.548 Sum_probs=26.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++.++|.|+|++|.++++.|. .|. ++.++|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCC
Confidence 456788899999999999996 785 58888765
No 391
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.44 E-value=0.14 Score=34.01 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=25.8
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEE
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCL 49 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l 49 (84)
+..++|+|.| .|++|.++++.|...|.. +++
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~ 35 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGAD-VVV 35 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEE
Confidence 3456899998 799999999999999986 444
No 392
>PRK09242 tropinone reductase; Provisional
Probab=93.42 E-value=0.16 Score=34.56 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=30.1
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++++++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~ 42 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD 42 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 35678999998 68999999999999998 48887654
No 393
>PRK08278 short chain dehydrogenase; Provisional
Probab=93.42 E-value=0.16 Score=35.24 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=30.1
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++++++|.| .|++|.++++.|+..|. ++.+++...
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~ 40 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTA 40 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeccc
Confidence 5667899998 79999999999999998 588877643
No 394
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.42 E-value=0.14 Score=38.21 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=30.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
...+|+|+|.|..|..+++.|...|. +++..|...
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~~ 36 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKSL 36 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 34689999999999999999999998 588888643
No 395
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.40 E-value=0.16 Score=36.85 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=29.3
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593 21 TKILLIGV-EGVGAEIAKNIILSGVK-SVCLLDSG 53 (84)
Q Consensus 21 ~~vlivG~-gg~G~eiak~L~l~Gv~-~i~l~D~d 53 (84)
.+|.|+|+ |.+|..++..|+..|+. +++++|..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence 47999997 99999999999999974 79999973
No 396
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.39 E-value=0.12 Score=37.81 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=29.3
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHH-HhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNII-LSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~-l~Gv~~i~l~D~d 53 (84)
.|..++|.|+|+|.+|..+++.|. ..|+ ++..+|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~~ 179 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDPF 179 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCC
Confidence 588999999999999999999995 3455 47777754
No 397
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.38 E-value=0.14 Score=42.92 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=31.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
...+|+|||+|+.|-+.|..|++.|. +++|+|...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence 35689999999999999999999998 599998753
No 398
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.38 E-value=0.12 Score=35.55 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=29.9
Q ss_pred HhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++.++|.|++ |+|.++++.|+..|.. +.+.|.+
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~-v~l~~r~ 45 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAE-LAVTYLN 45 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEEeCC
Confidence 4677889999975 8999999999999974 7777654
No 399
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.38 E-value=0.15 Score=38.44 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=30.1
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...+|+|||.|..|.+.+..|...|. +++++|..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 35789999999999999999999997 59999865
No 400
>PRK07233 hypothetical protein; Provisional
Probab=93.37 E-value=0.16 Score=36.99 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=28.5
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+|+|||+|-.|-..|..|...|.+ ++|++...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~-v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHE-VTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-EEEEEeCC
Confidence 689999999999999999999985 88887654
No 401
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.33 E-value=0.17 Score=34.25 Aligned_cols=37 Identities=27% Similarity=0.481 Sum_probs=30.5
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++.++++|.| .|++|.++++.|+..|.. +.+++.+.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r~~ 41 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAA-VAIADLNQ 41 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCh
Confidence 35577899998 599999999999999984 77776654
No 402
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.33 E-value=0.12 Score=35.67 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=30.2
Q ss_pred HhhcCcEEEEcC---ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGV---EGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~---gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++++++++|.|+ +|+|.++++.|+..|.. +.+.|.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~-v~l~~r~ 42 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAE-VVLTGFG 42 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCE-EEEecCc
Confidence 467789999996 79999999999999985 8887643
No 403
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.32 E-value=0.14 Score=38.70 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=32.5
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..|..++|.|+|.|.+|..+|+.+...|.. +..+|..
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~-V~~~d~~ 183 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMR-VYFYDIE 183 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCC
Confidence 468999999999999999999999999984 7777753
No 404
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.32 E-value=0.16 Score=39.28 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=30.7
Q ss_pred hcCcEEEEcCChhHHHHHHHHHH--hCCCcEEEEeCCcc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIIL--SGVKSVCLLDSGVV 55 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l--~Gv~~i~l~D~d~v 55 (84)
...+|+|||+|+.|.+.|..|.. .|. +++|+|....
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCC
Confidence 46789999999999999999986 576 5999987653
No 405
>PRK12827 short chain dehydrogenase; Provisional
Probab=93.31 E-value=0.16 Score=34.03 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=28.4
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
+++++++|.| .|++|.++++.|+..|.. +++++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~~ 38 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLDI 38 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEcC
Confidence 4567899998 799999999999999985 666554
No 406
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.30 E-value=0.15 Score=34.86 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=29.1
Q ss_pred hhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++.+.|+|.|++ ++|.++++.|+..|. ++.+++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 456789999974 799999999999997 58887654
No 407
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.30 E-value=0.16 Score=37.91 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=30.3
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
...|+|||+|+.|.+.|..|+..|. +++|+|.+.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~-~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGK-KVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC-EEEEEecCC
Confidence 4689999999999999999999997 599999763
No 408
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.28 E-value=0.096 Score=36.26 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=28.8
Q ss_pred HHhhcCcEEEEc---CChhHHHHHHHHHHhCCCcEEEEe
Q psy9593 16 SRLRATKILLIG---VEGVGAEIAKNIILSGVKSVCLLD 51 (84)
Q Consensus 16 ~~l~~~~vlivG---~gg~G~eiak~L~l~Gv~~i~l~D 51 (84)
++++++.++|.| .+|+|.++++.|+..|.. +.+.+
T Consensus 2 ~~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~-v~~~~ 39 (261)
T PRK08690 2 GFLQGKKILITGMISERSIAYGIAKACREQGAE-LAFTY 39 (261)
T ss_pred CccCCcEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEc
Confidence 357788999999 459999999999999985 66653
No 409
>PRK06924 short chain dehydrogenase; Provisional
Probab=93.28 E-value=0.19 Score=34.03 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=27.7
Q ss_pred CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++++|.| .|++|.++++.|+..|. ++.+++...
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~-~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT-HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC-EEEEEeCCc
Confidence 4788998 79999999999999998 588777543
No 410
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.28 E-value=0.16 Score=35.01 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=28.9
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++.++++|.| .|++|.++++.|...|.. +.+.+.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~ 38 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDLD 38 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECC
Confidence 4567899998 699999999999999985 7777654
No 411
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.26 E-value=0.15 Score=38.86 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=32.0
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
++.++|+|+|.|+.|..+++.|...|. +++..|....
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~ 41 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTREA 41 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCCC
Confidence 346789999999999999999999998 5999997553
No 412
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.25 E-value=0.15 Score=35.58 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=28.7
Q ss_pred hhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 18 LRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 18 l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
++++.++|.|++ |+|.++++.|+..|.. +.+.+.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~-V~~~~r 41 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAE-LAFTYQ 41 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCE-EEEecC
Confidence 566789999986 8999999999999985 777764
No 413
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.25 E-value=0.17 Score=34.43 Aligned_cols=35 Identities=23% Similarity=0.484 Sum_probs=29.6
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++++|.| .+++|.++++.|+..|.. +.+++.+
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~ 42 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAARH 42 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCC
Confidence 5678899998 589999999999999984 7777654
No 414
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.24 E-value=0.09 Score=36.10 Aligned_cols=35 Identities=26% Similarity=0.521 Sum_probs=29.3
Q ss_pred HHhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEe
Q psy9593 16 SRLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLD 51 (84)
Q Consensus 16 ~~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D 51 (84)
++|++++++|.|++ |+|.++++.|+..|.. +.+.+
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~-vi~~~ 39 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGAD-IFFTY 39 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEe
Confidence 36788999999985 8999999999999985 66653
No 415
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=93.23 E-value=0.11 Score=38.86 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=30.5
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+...++|+|+|.|-.|..+++.|...++ +|+|+|+..
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~ 43 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRN 43 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCC
Confidence 4567899999999999999999965555 599998654
No 416
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.22 E-value=0.14 Score=34.57 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=26.9
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEe
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLD 51 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D 51 (84)
+++++++|.| .|++|.++++.|...|.. +.+.+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~-vv~~~ 36 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGAR-VVVNY 36 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCe-EEEEc
Confidence 4567899998 889999999999999975 55543
No 417
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.20 E-value=0.18 Score=37.09 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=28.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.+|+|||+|..|..+|..|...|.-+++|++..
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~ 33 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAA 33 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecC
Confidence 379999999999999999999884359999875
No 418
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=93.20 E-value=0.19 Score=33.63 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=28.1
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
+++++++|.| .|++|.++++.|+..|. .+.+.+.
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~ 38 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGT 38 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcC
Confidence 5678999998 79999999999999997 4666544
No 419
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.18 E-value=0.19 Score=35.42 Aligned_cols=36 Identities=28% Similarity=0.572 Sum_probs=30.4
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.+++++++|.| .||+|.++++.|+..|. ++.+++.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 42 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLE 42 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36678999998 69999999999999998 58887754
No 420
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.18 E-value=0.14 Score=37.62 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=29.8
Q ss_pred EEEEcCChhHHHHHHHHHHhCCC-cEEEEeCCccccccC
Q psy9593 23 ILLIGVEGVGAEIAKNIILSGVK-SVCLLDSGVVTKEDV 60 (84)
Q Consensus 23 vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d~v~~~nl 60 (84)
|+|+|+|.+|+.+++.|+..+-- ++++.|.+.-....+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~ 39 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERL 39 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH
Confidence 78999999999999999998855 899999876654333
No 421
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=93.18 E-value=0.16 Score=40.81 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=32.8
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.-+..+|+|||+|..|..+|..|...|+. ++|++.+.
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~-V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFD-VLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCe-EEEEeccc
Confidence 35678999999999999999999999995 99998754
No 422
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.16 E-value=0.19 Score=36.80 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=26.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..+|.|+|+|..|+.++..|+..| .++++..+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~ 38 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRS 38 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCC
Confidence 368999999999999999999998 46666543
No 423
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.16 E-value=0.16 Score=34.90 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=29.5
Q ss_pred HhhcCcEEEEcCC---hhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVE---GVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~g---g~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++.+.++|.|++ |+|.++++.|+..|.. +.+.+.+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r~ 42 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQN 42 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecCc
Confidence 3567889999974 9999999999999985 7777543
No 424
>PRK08177 short chain dehydrogenase; Provisional
Probab=93.16 E-value=0.21 Score=33.48 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=28.6
Q ss_pred CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
++|+|.| .|++|.++++.|+..|. ++.++|...-
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~ 36 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQ 36 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCc
Confidence 4688888 89999999999999997 5888876543
No 425
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=93.15 E-value=0.18 Score=37.72 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=30.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
...|+|||+|..|-..|+.|+..|. ++.++|.+.+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~ 37 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKGPL 37 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCcc
Confidence 4579999999999999999999998 4999997554
No 426
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=93.15 E-value=0.17 Score=38.40 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=30.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...+|+|+|+|..|.+.+..|.+.|.. ++++|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 467899999999999999999999985 8998765
No 427
>PLN02688 pyrroline-5-carboxylate reductase
Probab=93.14 E-value=0.2 Score=34.90 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=26.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCC---CcEEEE-eC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGV---KSVCLL-DS 52 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~-D~ 52 (84)
.+|.++|+|.+|+.++++|...|. ..++++ |.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 369999999999999999999985 257777 54
No 428
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=93.13 E-value=0.21 Score=36.70 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=28.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDS 52 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~ 52 (84)
++|+|||+|-.|-..|+.|...|.+ +++|++.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa 33 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEA 33 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEc
Confidence 4799999999999999999999853 6888875
No 429
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.12 E-value=0.2 Score=37.38 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=29.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..+|+|+|+|.+|.|+|..|...|.. +++++..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~-Vtli~~~ 189 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSK-VTVLDAA 189 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 57999999999999999999999985 9998763
No 430
>PLN02240 UDP-glucose 4-epimerase
Probab=93.11 E-value=0.17 Score=36.02 Aligned_cols=34 Identities=26% Similarity=0.520 Sum_probs=28.8
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
+++++|+|.| .|.+|..+++.|...|. +++++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 4567999998 59999999999999996 5888763
No 431
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=93.11 E-value=0.2 Score=35.68 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=28.8
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+..++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~ 39 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRN 39 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence 3467899998 79999999999999996 58887754
No 432
>PRK07791 short chain dehydrogenase; Provisional
Probab=93.10 E-value=0.12 Score=36.30 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=29.7
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.++++.++|.| .+|+|.++++.|+..|.. +.++|.+
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~~~ 39 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDIG 39 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeeCC
Confidence 46678889988 789999999999999985 7777643
No 433
>PLN02697 lycopene epsilon cyclase
Probab=93.09 E-value=0.18 Score=39.30 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=29.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..|+|||+|..|..+|..|+..|.+ +.++|.+
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~-V~LIe~~ 140 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLN-VGLIGPD 140 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCc-EEEecCc
Confidence 5799999999999999999999995 8888875
No 434
>PRK09186 flagellin modification protein A; Provisional
Probab=93.09 E-value=0.19 Score=34.03 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=28.6
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++|+|.| .|++|.++++.|+..|.. +.+++.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecC
Confidence 3567899998 689999999999999975 7776543
No 435
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.09 E-value=0.18 Score=33.58 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=26.4
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEE
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLL 50 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~ 50 (84)
+++++++|.| .|++|.++++.|...|.. +.++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~ 35 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVIN 35 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence 4567899998 799999999999999986 5444
No 436
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=93.07 E-value=0.16 Score=40.48 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=29.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..-|+|||+|..|++.|..+++.|.+ +.+++.+
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~k-V~LiE~~ 36 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAK-TLLLTHN 36 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCc-EEEEecc
Confidence 45799999999999999999999997 8888765
No 437
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.07 E-value=0.2 Score=33.54 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=28.9
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+.+.+|+|.| .|++|.++++.|...|.. +.+++.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r~ 39 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITARD 39 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeCC
Confidence 3457899998 699999999999999985 7777754
No 438
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.06 E-value=0.14 Score=39.68 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=32.0
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
.|..++|.|+|.|.+|.++++.|...|. ++..+|+
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~ 171 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDP 171 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 5889999999999999999999999998 5888886
No 439
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.05 E-value=0.18 Score=39.80 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=31.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..++|+|+|+|..|-+.+..|.+.|.. ++++|...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCCC
Confidence 478999999999999999999999984 99998654
No 440
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.05 E-value=0.26 Score=37.08 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=30.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~ 56 (84)
+|+|||+|+-|...|..++..|.+ ++++|.+.+-
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~-V~lie~~~~G 35 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKN-VTLIDEADLG 35 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-EEEEECCccc
Confidence 899999999999999999999985 9999987654
No 441
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=93.04 E-value=0.17 Score=30.49 Aligned_cols=36 Identities=19% Similarity=0.465 Sum_probs=27.1
Q ss_pred hcCcEEEEcCChhHHHHHHH-HHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIGVEGVGAEIAKN-IILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~-L~l~Gv~~i~l~D~d~ 54 (84)
++.+|+|+|+|++|..++.+ ....|.+-..++|.+.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~ 38 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP 38 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC
Confidence 45789999999999999854 4467777667776543
No 442
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=93.03 E-value=0.2 Score=36.93 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=29.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
..+|+|+|.|.+|.|+|..|...|.. +++++.
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~-Vtlv~~ 175 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCK-VTVIEL 175 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe-EEEEec
Confidence 47899999999999999999999984 999875
No 443
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.01 E-value=0.21 Score=35.42 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=28.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCC---CcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGV---KSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv---~~i~l~D~d~ 54 (84)
.+|.|+|+|.+|..+++.|...|. .++.+++.+.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~ 38 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK 38 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc
Confidence 369999999999999999999983 5688887643
No 444
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.98 E-value=0.19 Score=35.14 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=29.7
Q ss_pred HHhhcCcEEEEcC---ChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 16 SRLRATKILLIGV---EGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 16 ~~l~~~~vlivG~---gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
.+++++.++|.|+ +|+|.++++.|+..|.. +.+.+.
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~-V~l~~r 44 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAE-LAFTYQ 44 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcC
Confidence 3567788999997 59999999999999984 777653
No 445
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.96 E-value=0.23 Score=35.60 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=30.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
...+|+|.|+|++|...+..+...|..++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 4678999999999999999999999988887764
No 446
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=92.94 E-value=0.21 Score=37.67 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=31.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
...|+|||+|+.|.+.|..|+..|. ++.|+|.+.+
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~~~ 38 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGL-KTALVEKGKL 38 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCC
Confidence 4579999999999999999999998 4999998654
No 447
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=92.93 E-value=0.18 Score=32.69 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=27.5
Q ss_pred EEEcCChhHHHHHHHHHHhC----CCcEEEEeCCcc
Q psy9593 24 LLIGVEGVGAEIAKNIILSG----VKSVCLLDSGVV 55 (84)
Q Consensus 24 livG~gg~G~eiak~L~l~G----v~~i~l~D~d~v 55 (84)
.|||+|..|..+++.|+... .-+|+|+|+...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 48999999999999999884 567999998554
No 448
>PRK08251 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.24 Score=33.39 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=28.3
Q ss_pred cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++++|.| .|++|.++++.|+..|. ++.+++.+.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~ 36 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT 36 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH
Confidence 46788988 89999999999999996 588877543
No 449
>PRK14694 putative mercuric reductase; Provisional
Probab=92.86 E-value=0.23 Score=37.53 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=31.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
.+..|+|||+|+.|-..|..|.+.|. ++.++|.+.+
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~-~v~lie~~~~ 40 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGA-RVTLIERGTI 40 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEEcccc
Confidence 45689999999999999999999999 6999997654
No 450
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.86 E-value=0.31 Score=36.07 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=29.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...+|+|+|.|.+|.|++..|...|. ++++++..
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~ 169 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERGK-NVTLIHRS 169 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 45799999999999999999999998 49998754
No 451
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.85 E-value=0.14 Score=38.56 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=31.5
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.++.++|+|+|.|+.|-.+++.|...|. .++..|..
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~ 41 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDN 41 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCC
Confidence 4667899999999999999999999998 58888854
No 452
>PRK06701 short chain dehydrogenase; Provisional
Probab=92.84 E-value=0.19 Score=35.41 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=30.6
Q ss_pred HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..+++++++|.| .|++|.++++.|+..|.. +.+++..
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~-V~l~~r~ 79 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGAD-IAIVYLD 79 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 466778999998 689999999999999975 7777543
No 453
>PRK08643 acetoin reductase; Validated
Probab=92.83 E-value=0.25 Score=33.59 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=27.7
Q ss_pred cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++.++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~ 35 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYN 35 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45788887 88999999999999997 58887764
No 454
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.82 E-value=0.21 Score=37.46 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=31.7
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
+..++|+|+|.|+.|.++++.|...|. .+++.|....
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~ 39 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELK 39 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence 456799999999999999999999997 4888886543
No 455
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=92.81 E-value=0.22 Score=35.70 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=28.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+|.+||+|-+|..++++|...|. +++++|.+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~ 33 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP 33 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 69999999999999999999997 578887653
No 456
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.80 E-value=0.26 Score=37.26 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+-+..++|+|+|.|..|..+++.|...|. .+++.|...
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 45667899999999999999999999998 599999653
No 457
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=92.80 E-value=0.21 Score=38.19 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=30.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..+|+|+|+|..|.+++..|...|. +++++|...
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 4699999999999999999999998 499998643
No 458
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.80 E-value=0.23 Score=36.25 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=29.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...+|+|+|.|.+|.|++..|...|. ++++++..
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~-~Vtlv~~~ 173 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGK-AVTLVDNA 173 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEecC
Confidence 45799999999999999999999997 58998763
No 459
>PRK09897 hypothetical protein; Provisional
Probab=92.79 E-value=0.21 Score=39.04 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=28.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCC-cEEEEeCC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVK-SVCLLDSG 53 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~-~i~l~D~d 53 (84)
.+|+|||+|..|..++..|+..+.. +|+|+|+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~ 35 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQA 35 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecC
Confidence 5899999999999999999986542 69999983
No 460
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.78 E-value=0.25 Score=37.26 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=31.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcccc
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTK 57 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~ 57 (84)
+..|+|||+|+.|-+.|..+++.|.+ +.|+|.+.+--
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~-V~liE~~~~GG 38 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAK-ALLVEAKKLGG 38 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc-EEEeccccccc
Confidence 45799999999999999999999984 99999765433
No 461
>PRK11445 putative oxidoreductase; Provisional
Probab=92.78 E-value=0.2 Score=36.38 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=28.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..|+|||+|..|+.+|..|+.. + +++++|...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~-~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-M-KVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-C-CEEEEECCC
Confidence 3699999999999999999988 5 699999654
No 462
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.77 E-value=0.18 Score=37.76 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=29.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
...|+|||+|+.|.+.|..|...|. +++++|.+
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~-~v~liE~~ 37 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGK-RVAVIERY 37 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC-EEEEEecc
Confidence 4579999999999999999999997 59999974
No 463
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=92.75 E-value=0.28 Score=36.74 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=29.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..+|+|+|.|.+|.|++..|...|. ++++++..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~ 180 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL-HPTLIHRS 180 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-cEEEEecc
Confidence 4799999999999999999999998 59999754
No 464
>PRK06720 hypothetical protein; Provisional
Probab=92.74 E-value=0.25 Score=32.80 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=29.9
Q ss_pred HhhcCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++++.++|.|+ +|+|.++++.|...|. ++.++|.+
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~ 49 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDID 49 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence 467788999984 6799999999999996 58888854
No 465
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=92.71 E-value=0.25 Score=33.60 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=28.3
Q ss_pred cCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 20 ATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 20 ~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++|+|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~ 36 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINS 36 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 45789998 68999999999999997 588887653
No 466
>PRK07677 short chain dehydrogenase; Provisional
Probab=92.71 E-value=0.26 Score=33.51 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=27.7
Q ss_pred CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++++|.| .|++|.++++.|...|. ++.++|.+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~ 35 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTK 35 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 5788888 68899999999999998 588887653
No 467
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=92.71 E-value=0.18 Score=39.20 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=31.6
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
.|..++|.|+|.|.+|.++++.|...|. ++..+|+
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~ 169 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDP 169 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 5888999999999999999999998888 4888886
No 468
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.71 E-value=0.14 Score=35.42 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=29.0
Q ss_pred HHhhcCcEEEEcC---ChhHHHHHHHHHHhCCCcEEEEe
Q psy9593 16 SRLRATKILLIGV---EGVGAEIAKNIILSGVKSVCLLD 51 (84)
Q Consensus 16 ~~l~~~~vlivG~---gg~G~eiak~L~l~Gv~~i~l~D 51 (84)
++++++.++|.|+ +|+|.++++.|+..|.. +.+.+
T Consensus 2 ~~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~-v~~~~ 39 (260)
T PRK06997 2 GFLAGKRILITGLLSNRSIAYGIAKACKREGAE-LAFTY 39 (260)
T ss_pred CccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCe-EEEEc
Confidence 3567789999994 69999999999999985 66664
No 469
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=92.69 E-value=0.24 Score=33.46 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=29.9
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
+++++++|.| .|++|.++++.|...|.. ++++|.+.
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~-v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAK-VIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEecch
Confidence 5678899998 578999999999999974 77776654
No 470
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.68 E-value=0.23 Score=34.82 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=29.0
Q ss_pred hhcCcEEEEcC---ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIGV---EGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG~---gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++++.++|.|+ +|+|.++++.|+..|. ++.+.|..
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecC
Confidence 45678999997 5999999999999998 47777654
No 471
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.68 E-value=0.23 Score=37.56 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=29.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
..+|+|+|.|.+|.|++..|...|. ++++++.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~-~Vtlie~ 205 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGA-QVTVVEY 205 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeC
Confidence 5899999999999999999999998 4999874
No 472
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=92.67 E-value=0.2 Score=34.20 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=28.4
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
++++.++|.| .|++|.++++.|+..|.. +.++|.
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~~ 42 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGINI 42 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEecC
Confidence 6678899998 779999999999999975 666654
No 473
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.67 E-value=0.23 Score=34.66 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=26.2
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC--CcEEEEeCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGV--KSVCLLDSG 53 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv--~~i~l~D~d 53 (84)
+|.|+|+|-+|..+++.|...|. ..+.+.|.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~ 35 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN 35 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCC
Confidence 69999999999999999999885 335666653
No 474
>PRK10262 thioredoxin reductase; Provisional
Probab=92.66 E-value=0.25 Score=35.18 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=28.7
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
+..+|+|||+|+.|.+.|..|.+.|.. .+++|.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~-~~~ie~ 37 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITG 37 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCC-eEEEEe
Confidence 567899999999999999999999985 667664
No 475
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=92.64 E-value=0.22 Score=38.19 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=28.0
Q ss_pred cEEEEcCChhHHHHHHHHHHh--CCCcEEEEeCC
Q psy9593 22 KILLIGVEGVGAEIAKNIILS--GVKSVCLLDSG 53 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~--Gv~~i~l~D~d 53 (84)
.|+|||.|-+|+.+|..|++. |. +++++|..
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~-~V~VlEk~ 34 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNW-SITLIERL 34 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCC-eEEEEEcC
Confidence 589999999999999999997 76 59999984
No 476
>PRK12742 oxidoreductase; Provisional
Probab=92.63 E-value=0.13 Score=34.44 Aligned_cols=34 Identities=26% Similarity=0.573 Sum_probs=28.1
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEe
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLD 51 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D 51 (84)
+++.++|+|.| .|++|.++++.|...|.. +.+.+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~~ 37 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFTY 37 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEec
Confidence 46678999998 589999999999999985 55553
No 477
>PRK06370 mercuric reductase; Validated
Probab=92.62 E-value=0.28 Score=36.90 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=33.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV 60 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl 60 (84)
...|+|||+|+-|.+.|..++..|. +++++|.+.+-...+
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~~~GG~c~ 44 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGM-KVALIERGLLGGTCV 44 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCccCCcee
Confidence 4689999999999999999999998 599999875544444
No 478
>PLN02712 arogenate dehydrogenase
Probab=92.58 E-value=0.21 Score=40.02 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=32.0
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.++..+|.|||+|.+|..+++.|...|. ++..+|.+.
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~~ 402 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRSD 402 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECCh
Confidence 4577899999999999999999999886 588888763
No 479
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=92.57 E-value=0.23 Score=37.45 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=29.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..+|+|+|.|.+|.|++..|...|.. +++++..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~-Vtli~~~ 212 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVE-VTVVEAA 212 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe-EEEEEec
Confidence 47999999999999999999999975 9999753
No 480
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.56 E-value=0.27 Score=33.19 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=27.8
Q ss_pred CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++++|.| .|++|.++++.|+..|. +++++|.+.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~ 35 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDV 35 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCH
Confidence 4788998 79999999999999997 488877654
No 481
>PRK06128 oxidoreductase; Provisional
Probab=92.54 E-value=0.23 Score=35.06 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=29.3
Q ss_pred HHhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEe
Q psy9593 16 SRLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLD 51 (84)
Q Consensus 16 ~~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D 51 (84)
.+++.++++|.| .|++|.++++.|+..|.. +.+.+
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~ 86 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGAD-IALNY 86 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEe
Confidence 467788999998 699999999999999985 55553
No 482
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=92.53 E-value=0.24 Score=34.05 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=29.9
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
+++.++++|.| .+++|.++++.|+..|.. +.+++.+
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~~ 43 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDIN 43 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence 45678899998 689999999999999985 7777654
No 483
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.52 E-value=0.21 Score=37.14 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=29.3
Q ss_pred CcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|+|+| .|.+|..+++.|...|. .++++|.+.
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQDD 132 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCCc
Confidence 6899998 99999999999999996 499998653
No 484
>PRK07577 short chain dehydrogenase; Provisional
Probab=92.51 E-value=0.26 Score=32.86 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=28.4
Q ss_pred hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
..++++|.| .|++|.++++.|+..|. ++.+++.+.
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~ 37 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSA 37 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 356899998 68999999999999997 477776543
No 485
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.50 E-value=0.27 Score=33.61 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=29.6
Q ss_pred hhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 18 LRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 18 l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
++.+.++|.| .+++|.++++.|+..|.. +.+++.+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~ 41 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRD 41 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence 5678899998 589999999999999985 7777664
No 486
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.50 E-value=0.21 Score=40.14 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
.+|.|+|+|-.|+.|+..++.+|.. ++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCe-EEEEeCCH
Confidence 5799999999999999999999984 99998653
No 487
>PRK05854 short chain dehydrogenase; Provisional
Probab=92.50 E-value=0.25 Score=35.24 Aligned_cols=36 Identities=22% Similarity=0.451 Sum_probs=30.1
Q ss_pred HhhcCcEEEEc-CChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIG-VEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.++.++++|.| .+|+|.++++.|+..|. ++.+++.+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~ 47 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN 47 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46778899998 78999999999999997 57777654
No 488
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.49 E-value=0.19 Score=32.58 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=26.4
Q ss_pred EEEEcCChhHHHHHHHHHHhCCCcEEEEeCCc
Q psy9593 23 ILLIGVEGVGAEIAKNIILSGVKSVCLLDSGV 54 (84)
Q Consensus 23 vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~ 54 (84)
++|+|+|.++.++++.....|.. ++++|++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~-v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFR-VTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEE-EEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCE-EEEEcCCc
Confidence 57899999999999999999995 99999873
No 489
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.48 E-value=0.23 Score=39.88 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=30.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
..++|+|||+|..|...|..|.+.|.. ++++|..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~-V~v~e~~ 463 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYD-VTVFEAL 463 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 467999999999999999999999985 9999874
No 490
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=92.47 E-value=0.27 Score=32.12 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=29.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 22 ~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
+++|+|+|+.|.++++.|-..|..-+-++|++.-
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~ 34 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPA 34 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCcc
Confidence 5899999999999999999999887888887643
No 491
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=92.47 E-value=0.23 Score=33.50 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=25.0
Q ss_pred hcCcEEEEc-CChhHHHHHHHHHHhCCCcEEE
Q psy9593 19 RATKILLIG-VEGVGAEIAKNIILSGVKSVCL 49 (84)
Q Consensus 19 ~~~~vlivG-~gg~G~eiak~L~l~Gv~~i~l 49 (84)
+++.++|.| .|++|.++++.|+..|.. +.+
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~-vv~ 32 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFK-VVA 32 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCE-EEE
Confidence 456788888 699999999999999985 444
No 492
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.46 E-value=0.24 Score=37.72 Aligned_cols=37 Identities=14% Similarity=0.006 Sum_probs=32.2
Q ss_pred hhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 18 LRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 18 l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
+++++|+|+|.|-.|..+++.|...|.. +++.|.+..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~~ 42 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCNA 42 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCCc
Confidence 4578999999999999999999999996 888886543
No 493
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.46 E-value=0.22 Score=38.28 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=31.5
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEe
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLD 51 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D 51 (84)
.|+.++|+|.|.|-+|+..++.|...|..=+.+-|
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 47899999999999999999999999998666666
No 494
>PRK05993 short chain dehydrogenase; Provisional
Probab=92.46 E-value=0.27 Score=34.16 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=27.5
Q ss_pred cCcEEEEcC-ChhHHHHHHHHHHhCCCcEEEEeCC
Q psy9593 20 ATKILLIGV-EGVGAEIAKNIILSGVKSVCLLDSG 53 (84)
Q Consensus 20 ~~~vlivG~-gg~G~eiak~L~l~Gv~~i~l~D~d 53 (84)
.++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~-Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWR-VFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECC
Confidence 457899985 99999999999999974 7777654
No 495
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.45 E-value=0.26 Score=37.10 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=31.2
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
...+|+|+|.|-+|.++|..|...|..+++++..
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~ 305 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYR 305 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeee
Confidence 4689999999999999999999999988999965
No 496
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.42 E-value=0.25 Score=32.49 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=29.9
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCcc
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v 55 (84)
.+...+|+|+|.|-+|...++.+...|+. ++..|...-
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~-v~~~d~~~~ 54 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAE-VVVPDERPE 54 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-E-EEEEESSHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCE-EEeccCCHH
Confidence 46778999999999999999999999996 777776543
No 497
>PRK07208 hypothetical protein; Provisional
Probab=92.41 E-value=0.27 Score=36.86 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=29.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCcEEEEeC
Q psy9593 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52 (84)
Q Consensus 19 ~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~ 52 (84)
+..+|+|||+|-.|...|..|...|.. +++++.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~-v~v~E~ 35 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYP-VTVLEA 35 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCc-EEEEec
Confidence 467899999999999999999999985 888875
No 498
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.40 E-value=0.23 Score=33.50 Aligned_cols=39 Identities=28% Similarity=0.293 Sum_probs=29.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCcEEEEeCCccccccC
Q psy9593 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDV 60 (84)
Q Consensus 21 ~~vlivG~gg~G~eiak~L~l~Gv~~i~l~D~d~v~~~nl 60 (84)
++|.|+|+|=+|...|-.|+..|. +++-+|.+.-..+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l 39 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEAL 39 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHH
Confidence 489999999999999999999997 488888876665556
No 499
>KOG0069|consensus
Probab=92.38 E-value=0.16 Score=37.88 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=27.9
Q ss_pred HHhhcCcEEEEcCChhHHHHHHHHHHhCCCcEEE
Q psy9593 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCL 49 (84)
Q Consensus 16 ~~l~~~~vlivG~gg~G~eiak~L~l~Gv~~i~l 49 (84)
..++.++|.|+|.|.+|.++++.|...| ..|.-
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y 190 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY 190 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee
Confidence 4688999999999999999999999877 43443
No 500
>PLN02306 hydroxypyruvate reductase
Probab=92.36 E-value=0.2 Score=37.68 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=30.5
Q ss_pred HhhcCcEEEEcCChhHHHHHHHHH-HhCCCcEEEEeCC
Q psy9593 17 RLRATKILLIGVEGVGAEIAKNII-LSGVKSVCLLDSG 53 (84)
Q Consensus 17 ~l~~~~vlivG~gg~G~eiak~L~-l~Gv~~i~l~D~d 53 (84)
.|..++|.|+|.|.+|.++++.|. -.|+. +..+|..
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~-V~~~d~~ 198 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLY 198 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCE-EEEECCC
Confidence 588999999999999999999985 56774 7777753
Done!