RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9593
(84 letters)
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 87.9 bits (218), Expect = 9e-23
Identities = 33/61 (54%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
Q RLRA+++LL+G++G+GAEIAKN+IL+GVK + +LD VT ED AQFL +G+
Sbjct: 31 QKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGSVGR 89
Query: 75 N 75
N
Sbjct: 90 N 90
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 89.0 bits (220), Expect = 1e-22
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
Q L + + LI G EI KN++L G+ S ++D V+ ED F IGK
Sbjct: 27 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAG-NNFFLQRSSIGK 85
Query: 75 N 75
N
Sbjct: 86 N 86
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 88.7 bits (219), Expect = 1e-22
Identities = 22/61 (36%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
+++ + +L++G++G+G EIAKN++L+GVKS+ + D V D++ QF +DIG+
Sbjct: 22 MLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLS-TQFFLTEKDIGQ 80
Query: 75 N 75
Sbjct: 81 K 81
Score = 66.4 bits (161), Expect = 1e-14
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 14 YQSRLRATKILLIGVEGVGAEIAKNIILSGVKS-----VCLLDSGVVTKEDVNTAQFLAP 68
+Q ++ +K+ L+G +G E+ KN L G+ S + + D+ + K ++N QFL
Sbjct: 419 FQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLN-RQFLFR 477
Query: 69 HEDIGKN 75
+D+GKN
Sbjct: 478 PKDVGKN 484
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo
sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 52.4 bits (125), Expect = 7e-10
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 14 YQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG 73
+ ++L++G G+G E+ KN++L+G + L+D + ++N QFL + +G
Sbjct: 11 LAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNR-QFLFQKKHVG 69
Query: 74 K 74
+
Sbjct: 70 R 70
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 51.8 bits (124), Expect = 1e-09
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
Q L K+L+IG G+G E+ KN+ LSG + + ++D + ++N QFL +DIG+
Sbjct: 35 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGR 93
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 44.5 bits (105), Expect = 4e-07
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 14 YQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG 73
Q L K+L+IG G+G E+ KN+ LSG + + ++D + ++N QFL +DIG
Sbjct: 405 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIG 463
Query: 74 K 74
+
Sbjct: 464 R 464
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 41.4 bits (97), Expect = 6e-06
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTA-QFLAPHEDIG 73
++ TK+LL+G +G +++ +I GV+ + +D+G V N Q L ED G
Sbjct: 322 LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV--SYSNPVRQALYNFEDCG 379
Query: 74 KN 75
K
Sbjct: 380 KP 381
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 35.0 bits (81), Expect = 9e-04
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 11 ILPY--QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTA-QFLA 67
ILP ++ TK+LL+G +G +++ +I GV+ + +D+G V N Q L
Sbjct: 23 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV--SYSNPVRQALY 80
Query: 68 PHEDIGKN 75
ED GK
Sbjct: 81 NFEDCGKP 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.012
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 15/60 (25%)
Query: 17 RLRATKILLIG---VEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG 73
+ +AT IL G G+G +N +GV V+ ++ P +D G
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKDGTGV--------RVIVAGTLDI----NPDDDYG 542
Score = 25.8 bits (56), Expect = 2.3
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 13/54 (24%)
Query: 34 EIAKNIILSGVKSVCLLDSGVVTKEDVNT--AQFL---APHEDIGKNGLKPPTS 82
E + + K + T+ T A L A ED+ GL P +
Sbjct: 1712 EHSTSYTFRSEKGLLSA-----TQ---FTQPALTLMEKAAFEDLKSKGLIPADA 1757
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding,
protein-solvent interaction, oxidoreductase; HET: NAD;
1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1
PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A
1hlp_A* 2hlp_A
Length = 303
Score = 28.2 bits (64), Expect = 0.20
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 21 TKILLIGVEG-VGAEIAKNIILSGVKS-VCLLDSGVVTKEDV 60
TK+ ++G G VGA NI L + V +D + KED
Sbjct: 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVD--IPDKEDD 40
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 27.7 bits (62), Expect = 0.31
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVN-TAQFLAPHEDIG 73
Q +L+ K++++G G+G ++ + SG+ + L+D+ + E+ N T Q L +D+G
Sbjct: 113 QDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI--ENTNLTRQVLFSEDDVG 170
Query: 74 KN 75
KN
Sbjct: 171 KN 172
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
ATP-binding, UBL conjugation pathway, transfer
structural genomics consortium, SGC; HET: ATP; 2.00A
{Homo sapiens} PDB: 3guc_A*
Length = 292
Score = 27.6 bits (62), Expect = 0.43
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55
++R + ++GV GVG+ A+ + G+ + L D V
Sbjct: 31 YEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV 71
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein
complex, THIF, TRAN biosynthetic protein complex; 1.98A
{Escherichia coli} PDB: 1zfn_A* 1zkm_A
Length = 251
Score = 26.3 bits (59), Expect = 1.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVV 55
Q +L +++L+IG+ G+G A + +GV ++ L D V
Sbjct: 23 QQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDV 63
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 26.4 bits (59), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 7 TSSSILPYQSRLRATKILLIGVEGVG 32
SS ++P S +R K+ L+G GVG
Sbjct: 10 HSSGLVPRGSAIRELKVCLLGDTGVG 35
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 25.9 bits (58), Expect = 1.7
Identities = 8/37 (21%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKS-VCLLD 51
++ + K++LIG VG+ A +++ + + ++D
Sbjct: 2 NKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIID 38
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 25.6 bits (57), Expect = 1.8
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 16 SRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
+ + KI L+G +G +A ++ + V L D
Sbjct: 1 NAMARKKITLVGAGNIGGTLAHLALIKQLGDVVLFD 36
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 25.6 bits (57), Expect = 2.2
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
R K+ +IG +G + L + V L D
Sbjct: 8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYD 40
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A*
1uxj_A* 1uxi_A*
Length = 309
Score = 25.5 bits (57), Expect = 2.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
KI +IG VG+ A + + + LLD
Sbjct: 4 KISIIGAGFVGSTTAHWLAAKELGDIVLLD 33
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann
fold, (2) Cys-X-X-Cys zinc-binding M MOAD:
ubiquitin-like fold; 1.70A {Escherichia coli} SCOP:
c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Length = 249
Score = 25.1 bits (56), Expect = 2.5
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 15 QSRLRATKILLIGVEGVGAEIA 36
Q L+ +++L++G+ G+G +
Sbjct: 26 QEALKDSRVLIVGLGGLGCAAS 47
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog
complex, oxidoreductase; HET: A3D; 2.00A
{Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A*
2fm3_A
Length = 317
Score = 25.1 bits (56), Expect = 2.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
KI +IG +G IA + + V L D
Sbjct: 6 KIAVIGSGQIGGNIAYIVGKDNLADVVLFD 35
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 25.2 bits (56), Expect = 3.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
KI LIG +G +A L + V L D
Sbjct: 9 KIALIGSGMIGGTLAHLAGLKELGDVVLFD 38
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 25.2 bits (56), Expect = 3.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
KI+L+G +G +A I+ + V L D
Sbjct: 6 KIVLVGSGMIGGVMATLIVQKNLGDVVLFD 35
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 25.2 bits (56), Expect = 3.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
KI +IG +G+ IA + + V + D
Sbjct: 16 KISIIGAGQIGSTIALLLGQKDLGDVYMFD 45
>3tl2_A Malate dehydrogenase; center for structural genomics of
infectious diseases, csgid dehydrogenase,
oxidoreductase, citric acid cycle; 1.70A {Bacillus
anthracis}
Length = 315
Score = 24.8 bits (55), Expect = 3.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
K+ +IG GA A + + V L+D
Sbjct: 10 KVSVIGAGFTGATTAFLLAQKELADVVLVD 39
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 24.8 bits (54), Expect = 3.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
I ++G +G IA + S SV + D
Sbjct: 7 NICVVGAGKIGQMIAALLKTSSNYSVTVAD 36
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 25.0 bits (55), Expect = 3.5
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 21 TKILLIGVEGVG-----AEIAKNIILSGVKSVCL 49
I+L G G G A++A +L K +
Sbjct: 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAF 139
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 24.8 bits (55), Expect = 3.8
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKS-VCLLD 51
++ ++ TK+ +IG VG+ +A G+ + L D
Sbjct: 2 ETTVKPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLED 39
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase;
HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 24.8 bits (55), Expect = 4.4
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKS-VCLLD 51
K+ +G VG+ A +L+ + L+D
Sbjct: 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVD 32
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 24.8 bits (55), Expect = 4.5
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 17 RLRATKILLIGVEGVGAEIAKNIILSGVKS-VCLLD 51
K+ LIG VG+ A +I G+ + ++D
Sbjct: 2 NKHVNKVALIGAGFVGSSYAFALINQGITDELVVID 37
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 24.6 bits (54), Expect = 4.8
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 9 SSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKS-VCLLD 51
+ Q KI ++G + VG A ++++ + V L+D
Sbjct: 10 GHLATSQEPRSYNKITVVGCDAVGMADAISVLMKDLADEVALVD 53
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 24.4 bits (54), Expect = 5.8
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 19 RATKILLIGVEGVGAEIAKNIILSGVKS-VCLLD 51
K++L+G VG+ A ++L G+ + ++D
Sbjct: 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVD 41
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 24.5 bits (54), Expect = 6.1
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 20 ATKILLIGVEGVGAEIAKNII 40
A+ LL + G+ + +A+NI+
Sbjct: 505 ASAALLARISGLNSTLAQNIV 525
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 24.4 bits (54), Expect = 6.2
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 19 RATKILLIGVEGVGAEIAKNIILSGVKS-VCLLD 51
++++IG VGA ++ G+ + L+D
Sbjct: 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLID 38
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 24.0 bits (53), Expect = 6.4
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 19 RATKILLIGVEGVGAEIAKNIILSGVKS-VCLLD 51
+K+ +IG VGA A + L + + L+D
Sbjct: 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLID 39
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC
AMP; 2.30A {Escherichia coli}
Length = 671
Score = 24.0 bits (53), Expect = 6.6
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 18 LRATKILLIGVEGVGAEIAKNII 40
A+ L V VG +A ++
Sbjct: 539 EAASIEELQKVPDVGIVVASHVH 561
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 24.1 bits (53), Expect = 6.6
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 8 SSSILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKS-VCLLD 51
SS KI ++G +G I G+ + LLD
Sbjct: 2 SSKSWANHENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLD 46
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor
complex, fragment-based LEAD genera inhibitors; HET:
52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A*
4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A*
4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A*
1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Length = 331
Score = 24.0 bits (53), Expect = 6.6
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKS-VCLLD 51
+ ++ KI ++GV VG A +I++ + + L+D
Sbjct: 14 EEQVPQNKITVVGVGAVGMACAISILMKDLADELALVD 51
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability;
HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 24.0 bits (53), Expect = 8.0
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKS-VCLLD 51
KI ++G+ VG+ A +++ G + L+D
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLID 32
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA
recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1
a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Length = 203
Score = 23.8 bits (52), Expect = 8.3
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 24 LLIGVEGVGAEIAKNIILSG 43
LI GVG ++A ILSG
Sbjct: 74 ELIKTNGVGPKLALA-ILSG 92
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination,
branch migration, DNA BIND oligomerization, acidic PIN;
2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A
2h5x_A 1bvs_A
Length = 212
Score = 23.8 bits (52), Expect = 8.4
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 24 LLIGVEGVGAEIAKNIILSG 43
L+ V GVG +A L+
Sbjct: 89 TLLSVSGVGPRLAMA-ALAV 107
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex,
octameric RUVA, AAA-ATPase domain, complex with
nucleotide, hydrolase; HET: ANP; 3.30A {Thermus
thermophilus} SCOP: a.60.2.1 b.40.4.2
Length = 191
Score = 23.7 bits (52), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 24 LLIGVEGVGAEIAKNIILSG 43
LL+ V GVG ++A +LS
Sbjct: 73 LLLSVSGVGPKVALA-LLSA 91
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A
{Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2
PDB: 1v9p_A*
Length = 667
Score = 24.0 bits (53), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 20 ATKILLIGVEGVGAEIAKNII 40
A+ LI VE VG A+ I+
Sbjct: 536 ASLEELIEVEEVGELTARAIL 556
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA
binding domain, homodimer, hydrolase; 1.45A {Pyrococcus
furiosus} SCOP: a.60.2.5
Length = 75
Score = 23.0 bits (50), Expect = 9.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 25 LIGVEGVGAEIAKNI 39
L+ VEG+G +IAK I
Sbjct: 48 LMKVEGIGEKIAKEI 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.370
Gapped
Lambda K H
0.267 0.0826 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,156,893
Number of extensions: 57400
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 56
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)