RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9593
(84 letters)
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor
protein-binding protein 1, APPBP1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 529
Score = 72.3 bits (177), Expect = 3e-17
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
Q L + + LI G EI KN++L G+ S ++D V+ ED F IGK
Sbjct: 20 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAG-NNFFLQRSSIGK 78
Query: 75 N 75
N
Sbjct: 79 N 79
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 67.4 bits (164), Expect = 1e-15
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
Q L K+L+IG G+G E+ KN+ LSG + + ++D + ++N QFL +DIG+
Sbjct: 32 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN-RQFLFRPKDIGR 90
Query: 75 N 75
Sbjct: 91 P 91
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein
MoeB {Escherichia coli [TaxId: 562]}
Length = 247
Score = 53.1 bits (126), Expect = 1e-10
Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 74
Q L+ +++L++G+ G+G ++ + +GV ++ LLD V+ ++ +G+
Sbjct: 25 QEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTL-HSDATVGQ 83
Query: 75 N 75
Sbjct: 84 P 84
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ
{Thermotoga maritima [TaxId: 2336]}
Length = 194
Score = 27.6 bits (61), Expect = 0.13
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSV 47
KI +IGV G G +I G+ V
Sbjct: 2 KIKVIGVGGAGNNAINRMIEIGIHGV 27
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 150
Score = 27.4 bits (60), Expect = 0.15
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
KI+L+G +G +A I+ + V L D
Sbjct: 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFD 34
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 305
Score = 27.8 bits (60), Expect = 0.16
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVT 56
+I++IG VG +A ++ G ++ +LD G +
Sbjct: 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN 37
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 26.4 bits (58), Expect = 0.38
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 20 ATKILLIGVEGVGAEIAKNIILSGVKSV 47
KI ++G G G + + G++
Sbjct: 15 KAKITVVGCGGAGNNTITRLKMEGIEGA 42
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme)
{Thermotoga maritima [TaxId: 2336]}
Length = 222
Score = 25.8 bits (56), Expect = 0.56
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 17 RLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS-GVVTKEDVNTAQ 64
++ K+++ G+ G I K ++ GVK+V +D G++ + D T
Sbjct: 23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCL 71
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 198
Score = 25.6 bits (56), Expect = 0.68
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSV 47
I +IGV G G ++ + V+ V
Sbjct: 3 VIKVIGVGGGGGNAVNHMAKNNVEGV 28
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 25.6 bits (56), Expect = 0.75
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSV 47
I ++G+ G G +I G+K V
Sbjct: 3 VIKVVGIGGGGVNAVNRMIEQGLKGV 28
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like
protein HI0607 {Haemophilus influenzae [TaxId: 727]}
Length = 167
Score = 25.2 bits (54), Expect = 1.0
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
K+++ G G+ + SG + + +
Sbjct: 19 KVIVHGSGGMAKAVVAAFKNSGFEKLKIYA 48
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 90
Score = 24.3 bits (53), Expect = 1.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 19 RATKILLIGVEGVGAEIAKNII 40
A+ LL + G+ + +A+NI+
Sbjct: 31 TASAALLARISGLNSTLAQNIV 52
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 142
Score = 24.6 bits (53), Expect = 1.6
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 22 KILLIGVEGVGAEIAKNIILSG-VKSVCLLD 51
K+ +IG VGA A + L + L+D
Sbjct: 3 KVAIIGAGFVGASAAFTMALRQTANELVLID 33
>d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId:
5507]}
Length = 400
Score = 24.8 bits (54), Expect = 1.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 32 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG 73
A AKN ILSG+ S ++G+ T + Q L ++ +
Sbjct: 63 EASCAKNCILSGMDSNAYKNAGITTSGNKLRLQQLINNQLVS 104
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 24.6 bits (53), Expect = 1.7
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 15 QSRLRATKILLIGVEGVGAEIAKNIILSGVKS-VCLLD 51
+ +L KI ++GV VG A +I+L G+ + L+D
Sbjct: 14 EDKLSRCKITVVGVGDVGMACAISILLKGLADELALVD 51
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma
gondii [TaxId: 5811]}
Length = 154
Score = 24.3 bits (52), Expect = 1.7
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 19 RATKILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
R K+ +IG +G + L + V L D
Sbjct: 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYD 38
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 24.4 bits (52), Expect = 1.8
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPH 69
++ IG V +A + GV+ V L+ + + +
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTET 49
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3
{Thermus filiformis [TaxId: 276]}
Length = 181
Score = 24.5 bits (52), Expect = 1.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 25 LIGVEGVGAEIAKNII 40
LI VE VG A+ I+
Sbjct: 141 LIEVEEVGELTARAIL 156
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 24.3 bits (52), Expect = 2.0
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 21 TKILLIGVEGVG-----AEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI 72
I+L+GV+G G ++A G V L+ + V + Q L +
Sbjct: 13 YVIMLVGVQGTGKATTAGKLAYFYKKKG-FKVGLVGADVYRPAALEQLQQLGQQIGV 68
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 24.1 bits (51), Expect = 2.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 21 TKILLIGVEGVGAEIAKNIILSG 43
+I IG+ +GA +A N++ +G
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAG 24
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 24.5 bits (52), Expect = 2.3
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 27 GVEGV-------GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNGLKP 79
G GV EI ++ L GV S+ L ++ + P++ + +
Sbjct: 346 GRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLKARTVGVPNDVLYNEVYEG 405
Query: 80 PT 81
PT
Sbjct: 406 PT 407
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 142
Score = 23.5 bits (50), Expect = 3.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
KI +IG VG+ A + + + LLD
Sbjct: 3 KISIIGAGFVGSTTAHWLAAKELGDIVLLD 32
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 23.5 bits (50), Expect = 3.4
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 21 TKILLIGVEGVG-----AEIAKNIILSGVKSVCLLDSGV 54
I+++GV G G ++AK + G KSV L +
Sbjct: 12 FVIMVVGVNGTGKTTSCGKLAKMFVDEG-KSVVLAAADT 49
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967
{Thermus thermophilus [TaxId: 274]}
Length = 65
Score = 22.8 bits (49), Expect = 3.7
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 19 RATKILLIGVEGVGAEIAKNII 40
A+ L+ + G+G +A+ I+
Sbjct: 13 EASLEELMALPGIGPVLARRIV 34
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 73
Score = 22.8 bits (49), Expect = 3.9
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 24 LLIGVEGVGAEIAKNII 40
LL+ V GVG ++A ++
Sbjct: 11 LLLSVSGVGPKVALALL 27
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 152
Score = 23.3 bits (49), Expect = 4.5
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
+ +G + A +A ++ G + + +
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIAN 31
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 23.2 bits (49), Expect = 4.8
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 22 KILLIGVEGVGAEIAKNIILSG 43
K+ IG+ +G ++KN++ +G
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAG 23
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 22.9 bits (49), Expect = 4.9
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 19 RATKILLIGVEGVGAEIAKNII 40
+ L ++ +G + A+ I+
Sbjct: 29 EGSARDLRSLQRIGPKKAQLIV 50
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF
{Aeropyrum pernix [TaxId: 56636]}
Length = 70
Score = 22.5 bits (48), Expect = 5.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 18 LRATKILLIGVEGVGAEIAKNI 39
A+K + VEG+G + A+ I
Sbjct: 40 FTASKAEISKVEGIGEKRAEEI 61
>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter
jejuni [TaxId: 197]}
Length = 193
Score = 23.0 bits (48), Expect = 6.0
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVKSVCLLD 51
KI + G G G G K LD
Sbjct: 4 KIYIYGASGHGLVCEDVAKNMGYKECIFLD 33
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 23.1 bits (49), Expect = 6.2
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 10 SILPYQSRLRATKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52
+ ++ + KI ++GV VG A +I+ + L
Sbjct: 10 PVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVD 52
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium
longum, strain am101-2 [TaxId: 216816]}
Length = 143
Score = 22.6 bits (48), Expect = 6.5
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 21 TKILLIGVEGVGAEIAKNIILSGVKSVCLLDS 52
TK+ +IG VG+ +A G+ +L+
Sbjct: 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLED 33
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 71
Score = 22.0 bits (47), Expect = 6.8
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 24 LLIGVEGVGAEIAKNII 40
L+ V GVG +A +
Sbjct: 10 ALLSVSGVGPRLAMATL 26
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 150
Score = 22.8 bits (48), Expect = 6.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 12 LPYQSRLRATKILLIGVEGVGAEIAKNIILSGVK 45
L +L+ +ILLIG VG ++ +G K
Sbjct: 5 LQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCK 38
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 61
Score = 21.9 bits (47), Expect = 7.1
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 25 LIGVEGVGAEIAKNIILSGVKSV 47
+ + GVG A+ + +G ++
Sbjct: 3 IEDLPGVGPATAEKLREAGYDTL 25
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 22.8 bits (48), Expect = 8.0
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 23 ILLIGVEGVG-----AEIAKNIILSGVKSVCLLDSGV 54
L+G++G G A++A G + L+ +
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADT 48
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 140
Score = 22.3 bits (47), Expect = 8.6
Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 22 KILLIGVEGVGAEIAKNIILSG-VKSVCLLD 51
KI ++G+ VG+ A +++ G + + L+D
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLID 32
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 148
Score = 22.4 bits (48), Expect = 9.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 40 ILSGVKSVCLLDSGVVTKEDVNTAQFLAP 68
+L + C L+SG + ED+ A+ L P
Sbjct: 101 VLKRMGMACGLESGSCSAEDLKMARSLVP 129
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 22.7 bits (47), Expect = 9.0
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 22 KILLIGVEGVGAEIAKNIILSGVK 45
+L++G V + SG+K
Sbjct: 4 SVLMLGSGFVTRPTLDVLTDSGIK 27
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 60
Score = 21.6 bits (46), Expect = 9.1
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 18 LRATKILLIGVEGVGAEIAKNII 40
AT L +EG+ + A +I
Sbjct: 27 ATATVGELTDIEGISEKAAAKMI 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.370
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 263,469
Number of extensions: 9447
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 50
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)