BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9595
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain
pdb|2XML|B Chain B, Crystal Structure Of Human Jmjd2c Catalytic Domain
Length = 348
Score = 207 bits (526), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 95/161 (59%), Positives = 127/161 (78%), Gaps = 4/161 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
+IM FRP+ EEF++F+K++ YMES+GAH+AGLAKVIPP EW PR+ +D ++ IP
Sbjct: 16 KIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDID----NLLIP 71
Query: 132 APICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYV 191
API Q+VTG+ GL+ Q NIQK+ MTV+E+ +AN +Y TP++ DYEDLERKYWKN+T+V
Sbjct: 72 APIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNLTFV 131
Query: 192 SPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
+PIYGAD++GSI DE V+ WNI L T+LD V E+ GISI+
Sbjct: 132 APIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIE 172
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|B Chain B, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2Q8C|A Chain A, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|B Chain B, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8D|A Chain A, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8D|B Chain B, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8E|A Chain A, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
pdb|2Q8E|B Chain B, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
Length = 352
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/180 (52%), Positives = 131/180 (72%), Gaps = 9/180 (5%)
Query: 53 GEVKSTIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEW 112
G + S +TL P + IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW
Sbjct: 1 GSMASESETLNPSAR-----IMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEW 55
Query: 113 VPRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATP 172
PR S +D D+ IPAPI Q+VTG+ GL+ Q NIQK+ MTVRE+ +AN +Y TP
Sbjct: 56 KPRASYDDID----DLVIPAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTP 111
Query: 173 KHFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
++ ++E+LERKYWKN+T+ PIYGADV+G++ ++ V+ WNI L TILD V ++ GI+I+
Sbjct: 112 RYSEFEELERKYWKNLTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 171
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ6|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ7|A Chain A, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OQ7|B Chain B, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OS2|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OS2|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OT7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OT7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OX0|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2OX0|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2VD7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|2VD7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|3NJY|A Chain A, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|3NJY|B Chain B, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|2YBP|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBP|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|A Chain A, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|B Chain B, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|3PDQ|A Chain A, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|3PDQ|B Chain B, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|2YBK|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|2YBK|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|3U4S|A Chain A, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3U4S|B Chain B, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3RVH|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|3RVH|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4AI9|A Chain A, Jmjd2a Complexed With Daminozide
pdb|4AI9|B Chain B, Jmjd2a Complexed With Daminozide
Length = 381
Score = 194 bits (493), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 123/160 (76%), Gaps = 4/160 (2%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S +D D+ IPA
Sbjct: 36 IMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID----DLVIPA 91
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
PI Q+VTG+ GL+ Q NIQK+ MTVRE+ +AN +Y TP++ ++E+LERKYWKN+T+
Sbjct: 92 PIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNP 151
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGADV+G++ ++ V+ WNI L TILD V ++ GI+I+
Sbjct: 152 PIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 191
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP3|B Chain B, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP5|A Chain A, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
pdb|2GP5|B Chain B, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
Length = 349
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 123/160 (76%), Gaps = 4/160 (2%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S +D D+ IPA
Sbjct: 13 IMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID----DLVIPA 68
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
PI Q+VTG+ GL+ Q NIQK+ MTVRE+ +AN +Y TP++ ++E+LERKYWKN+T+
Sbjct: 69 PIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNP 128
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGADV+G++ ++ V+ WNI L TILD V ++ GI+I+
Sbjct: 129 PIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 168
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|B Chain B, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 347
Score = 193 bits (491), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 123/161 (76%), Gaps = 4/161 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S +D D+ IP
Sbjct: 12 RIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID----DLVIP 67
Query: 132 APICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYV 191
API Q+VTG+ GL+ Q NIQK+ MTVRE+ +AN +Y TP++ ++E+LERKYWKN+T+
Sbjct: 68 APIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFN 127
Query: 192 SPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGADV+G++ ++ V+ WNI L TILD V ++ GI+I+
Sbjct: 128 PPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 168
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a
pdb|2WWJ|B Chain B, Structure Of Jmjd2a Complexed With Inhibitor 10a
Length = 348
Score = 193 bits (491), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 123/161 (76%), Gaps = 4/161 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S +D D+ IP
Sbjct: 7 RIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID----DLVIP 62
Query: 132 APICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYV 191
API Q+VTG+ GL+ Q NIQK+ MTVRE+ +AN +Y TP++ ++E+LERKYWKN+T+
Sbjct: 63 APIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFN 122
Query: 192 SPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGADV+G++ ++ V+ WNI L TILD V ++ GI+I+
Sbjct: 123 PPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 163
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d
Length = 354
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 58 TIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKS 117
T+K+ Q IM+F PT EEF DF K+I YMESQGAH+AGLAK+IPP EW R++
Sbjct: 3 TMKSKANCAQNPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARET 62
Query: 118 GYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDY 177
+I ++ I P+ QV +G+ G++ Q + +K+ MTV EY +AN +Y TP H ++
Sbjct: 63 ----YDNISEILIATPLQQVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNF 118
Query: 178 EDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
EDLERKYWKN Y SPIYGAD+SGS+ DE+ WN+ HLGTI D + ++ G+ I+
Sbjct: 119 EDLERKYWKNRIYNSPIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIE 173
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And
N- Oxalylglycine
Length = 337
Score = 180 bits (456), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 84/160 (52%), Positives = 114/160 (71%), Gaps = 4/160 (2%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
IM+F PT EEF DF K+I YMESQGAH+AGLAK+IPP EW R++ +I ++ I
Sbjct: 11 IMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARET----YDNISEILIAT 66
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
P+ QV +G+ G++ Q + +K+ MTV EY +AN +Y TP H ++EDLERKYWKN Y S
Sbjct: 67 PLQQVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNS 126
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGAD+SGS+ DE+ WN+ HLGTI D + ++ G+ I+
Sbjct: 127 PIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIE 166
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
pdb|4HON|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
Length = 330
Score = 179 bits (455), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 84/160 (52%), Positives = 114/160 (71%), Gaps = 4/160 (2%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
IM+F PT EEF DF K+I YMESQGAH+AGLAK+IPP EW R++ +I ++ I
Sbjct: 7 IMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARET----YDNISEILIAT 62
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
P+ QV +G+ G++ Q + +K+ MTV EY +AN +Y TP H ++EDLERKYWKN Y S
Sbjct: 63 PLQQVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNS 122
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGAD+SGS+ DE+ WN+ HLGTI D + ++ G+ I+
Sbjct: 123 PIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIE 162
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
pdb|4HOO|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
Length = 330
Score = 176 bits (447), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 83/160 (51%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
IM+F PT EEF DF K+I YMESQGAH+AGLAK+IPP EW R++ +I ++ I
Sbjct: 7 IMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARET----YDNISEILIAT 62
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
P+ QV +G+ G++ Q + + MTV EY +AN +Y TP H ++EDLERKYWKN Y S
Sbjct: 63 PLQQVASGRAGVFTQYHKKAAAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNS 122
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGAD+SGS+ DE+ WN+ HLGTI D + ++ G+ I+
Sbjct: 123 PIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIE 162
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
Length = 358
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 115/175 (65%), Gaps = 4/175 (2%)
Query: 58 TIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKS 117
++K++ Q H IM F PT EEF DF+ ++ YMESQGAH+AGLAKVIPP EW R+
Sbjct: 22 SMKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQ- 80
Query: 118 GYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDY 177
+ I D+ I P+ QV +G+ G++ Q + +K+ M V +Y +AN +Y TP H ++
Sbjct: 81 ---MYDDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNF 137
Query: 178 EDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
DLE++YWK+ PIYGAD+SGS+ +E WN+ HLGTILD + ++ G+ I+
Sbjct: 138 ADLEQRYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIE 192
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With
A-Ketoglutarate
pdb|3OPW|A Chain A, Crystal Structure Of The Rph1 Catalytic Core
Length = 373
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 49/197 (24%)
Query: 75 VFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPI 134
VF+PTYE+F+DF + + G K+G+ KVIPP EW + ++ + I +PI
Sbjct: 16 VFKPTYEQFEDFYAYCKAINKYGM-KSGVVKVIPPKEWKDKLDLPYSAETLQKIKIKSPI 74
Query: 135 CQVVTGKQGLYQQINIQKR------------------------------------QMTVR 158
Q ++G +GL+ N++K ++ ++
Sbjct: 75 QQHISGNKGLFMVQNVEKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSVSKSTKLKLK 134
Query: 159 EYGAMAN---KPRYATPKHFDYED---------LERKYWKNITYVSPIYGADVSGSITDE 206
+ + N ++ T D D LE YWK + + +P+YGAD GSI E
Sbjct: 135 NFESSFNIDDFEQFRTEYTIDLSDFQNTERLKFLEEYYWKTLNFTTPMYGADTPGSIFPE 194
Query: 207 DVNVWNINHLGTILDYV 223
+NVWN+ L ILD++
Sbjct: 195 GLNVWNVAKLPNILDHM 211
>pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EY9|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 572
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 53 GEVKSTIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEW 112
G++KST++ LLP+ +E K + E+++D K + + K I P
Sbjct: 310 GDIKSTLRALLPLVEE-KADRKFLDKALEDYRDARKGLDDLAKPS------EKAIHPQYL 362
Query: 113 VPRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMAN 165
+ S ++ D +I + P T Y ++N ++R + +G+MAN
Sbjct: 363 AQQISHFAADDAIFTCDVGTP-----TVWAARYLKMNGKRRLLGSFNHGSMAN 410
>pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|C Chain C, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|D Chain D, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|E Chain E, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|F Chain F, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|G Chain G, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|H Chain H, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|I Chain I, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|J Chain J, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|K Chain K, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|L Chain L, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 549
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 53 GEVKSTIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEW 112
G++KST++ LLP+ +E+ + + E+++D K + + K I P
Sbjct: 310 GDIKSTLRALLPLVEEKADRKFLDK-ALEDYRDARKGLDDLAKPS------EKAIHPQYL 362
Query: 113 VPRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMAN 165
+ S ++ D +I + P T Y ++N ++R + +G+MAN
Sbjct: 363 AQQISHFAADDAIFTCDVGTP-----TVWAARYLKMNGKRRLLGSFNHGSMAN 410
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 114 PRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPR 168
PRK G S +G+M + AP ++ G+Y + R + R + PR
Sbjct: 856 PRKDGPFGASGVGEMPLTAPHAAII---NGIYNACGARVRHLPARPEKVLEAMPR 907
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,477,357
Number of Sequences: 62578
Number of extensions: 259689
Number of successful extensions: 434
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 20
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)