BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9595
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V6L0|KDM4B_DROME Probable lysine-specific demethylase 4B OS=Drosophila melanogaster
GN=Kdm4B PE=3 SV=3
Length = 590
Score = 265 bits (676), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 120/160 (75%), Positives = 140/160 (87%), Gaps = 1/160 (0%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
I VFRPT+EEFKDF K++ YMESQGAHKAGLAKV+PPPEWVPR+SGY+ D +++IPA
Sbjct: 9 IKVFRPTWEEFKDFPKYVAYMESQGAHKAGLAKVVPPPEWVPRRSGYA-DLDALNVTIPA 67
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
PICQVVTGKQG YQQINIQK+ +TV+++ +A+ RYATPKHFD+EDLERKYWKNITYV+
Sbjct: 68 PICQVVTGKQGYYQQINIQKKPLTVKQFSELASTERYATPKHFDFEDLERKYWKNITYVA 127
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGADVSGSITD D + WNIN LGTILDYVN+DY I ID
Sbjct: 128 PIYGADVSGSITDTDQDSWNINRLGTILDYVNKDYNIQID 167
>sp|Q9V333|KDM4A_DROME Probable lysine-specific demethylase 4A OS=Drosophila melanogaster
GN=Kdm4A PE=1 SV=1
Length = 495
Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/177 (61%), Positives = 138/177 (77%), Gaps = 3/177 (1%)
Query: 57 STIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRK 116
ST + +Q + IM FRP+YEEF++FS +I Y+ES+GAH AGLAK+ PP EWVPRK
Sbjct: 2 STRSSFADEEQNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQPPAEWVPRK 61
Query: 117 SGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQ-MTVREYGAMANKPRYATPKHF 175
SGY +D+ +M+IPAPICQVVTG G+YQQINIQ+R+ MT+R++ AN + TP+HF
Sbjct: 62 SGYDIDNI--NMTIPAPICQVVTGAHGVYQQINIQQRRQMTLRQFMEKANSELHQTPRHF 119
Query: 176 DYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
DY+DLERKYWKNITY+SP+Y ADV GS++DED++VWNI L TIL+ VN DY I ID
Sbjct: 120 DYDDLERKYWKNITYISPLYAADVKGSLSDEDLDVWNIGRLDTILNLVNTDYNIIID 176
>sp|Q8VCD7|KDM4C_MOUSE Lysine-specific demethylase 4C OS=Mus musculus GN=Kdm4c PE=1 SV=1
Length = 1054
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/160 (59%), Positives = 126/160 (78%), Gaps = 4/160 (2%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
IM FRP+ EEF++F+K++ YMES+GAH+AGLAKVIPP EW PR+ +D ++ IPA
Sbjct: 16 IMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDID----NLLIPA 71
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
PI Q+VTG+ GL+ Q NIQK+ MTV+E+ +AN +Y TP++ DYEDLERKYWKN+T+V+
Sbjct: 72 PIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSSKYCTPRYLDYEDLERKYWKNLTFVA 131
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGAD++GSI DE V+ WNI L T+LD V E+ GISI+
Sbjct: 132 PIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIE 171
>sp|O94953|KDM4B_HUMAN Lysine-specific demethylase 4B OS=Homo sapiens GN=KDM4B PE=1 SV=4
Length = 1096
Score = 212 bits (539), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 125/166 (75%), Gaps = 4/166 (2%)
Query: 67 QERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIG 126
Q +IM FRPT EEFKDF+K++ Y+ESQGAH+AGLAK+IPP EW PR++ +D
Sbjct: 9 QNPSCKIMTFRPTMEEFKDFNKYVAYIESQGAHRAGLAKIIPPKEWKPRQTYDDID---- 64
Query: 127 DMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWK 186
D+ IPAPI QVVTG+ GL+ Q NIQK+ MTV EY +AN +Y TP+H D++DLERKYWK
Sbjct: 65 DVVIPAPIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWK 124
Query: 187 NITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
N+T+VSPIYGAD+SGS+ D+DV WNI L TILD V + G I+
Sbjct: 125 NLTFVSPIYGADISGSLYDDDVAQWNIGSLRTILDMVERECGTIIE 170
>sp|Q9H3R0|KDM4C_HUMAN Lysine-specific demethylase 4C OS=Homo sapiens GN=KDM4C PE=1 SV=2
Length = 1056
Score = 212 bits (539), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/160 (59%), Positives = 126/160 (78%), Gaps = 4/160 (2%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
IM FRP+ EEF++F+K++ YMES+GAH+AGLAKVIPP EW PR+ +D ++ IPA
Sbjct: 16 IMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDID----NLLIPA 71
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
PI Q+VTG+ GL+ Q NIQK+ MTV+E+ +AN +Y TP++ DYEDLERKYWKN+T+V+
Sbjct: 72 PIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNLTFVA 131
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGAD++GSI DE V+ WNI L T+LD V E+ GISI+
Sbjct: 132 PIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIE 171
>sp|Q91VY5|KDM4B_MOUSE Lysine-specific demethylase 4B OS=Mus musculus GN=Kdm4b PE=1 SV=1
Length = 1086
Score = 210 bits (534), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 95/160 (59%), Positives = 124/160 (77%), Gaps = 4/160 (2%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
IM FRPT +EF+DF++++ Y+ESQGAH+AGLAK+IPP EW PR++ +D D+ IPA
Sbjct: 15 IMTFRPTMDEFRDFNRYVAYIESQGAHRAGLAKIIPPKEWKPRQTYDDID----DVVIPA 70
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
PI QVVTG+ GL+ Q NIQK+ MTV EY +AN +Y TP+H D++DLERKYWKN+T+VS
Sbjct: 71 PIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWKNLTFVS 130
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGAD+SGS+ D+DV WNI +L TILD V + G I+
Sbjct: 131 PIYGADISGSLYDDDVAQWNIGNLRTILDMVERECGTIIE 170
>sp|Q8BW72|KDM4A_MOUSE Lysine-specific demethylase 4A OS=Mus musculus GN=Kdm4a PE=1 SV=3
Length = 1064
Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 123/160 (76%), Gaps = 4/160 (2%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S +D D+ IPA
Sbjct: 14 IMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRTSYDDID----DLVIPA 69
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
PI Q+VTG+ GL+ Q NIQK+ MTVRE+ +AN +Y TP++ ++E+LERKYWKN+T+
Sbjct: 70 PIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNP 129
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGADV+G++ ++ V+ WNI L TILD V ++ GI+I+
Sbjct: 130 PIYGADVNGTLYEQHVDEWNIGRLKTILDLVEKESGITIE 169
>sp|O75164|KDM4A_HUMAN Lysine-specific demethylase 4A OS=Homo sapiens GN=KDM4A PE=1 SV=2
Length = 1064
Score = 197 bits (502), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 123/160 (76%), Gaps = 4/160 (2%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S +D D+ IPA
Sbjct: 14 IMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID----DLVIPA 69
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
PI Q+VTG+ GL+ Q NIQK+ MTVRE+ +AN +Y TP++ ++E+LERKYWKN+T+
Sbjct: 70 PIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNP 129
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGADV+G++ ++ V+ WNI L TILD V ++ GI+I+
Sbjct: 130 PIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 169
>sp|Q5RD88|KDM4A_PONAB Lysine-specific demethylase 4A OS=Pongo abelii GN=KDM4A PE=2 SV=1
Length = 1064
Score = 197 bits (502), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 123/160 (76%), Gaps = 4/160 (2%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S +D D+ IPA
Sbjct: 14 IMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID----DLVIPA 69
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
PI Q+VTG+ GL+ Q NIQK+ MTVRE+ +AN +Y TP++ ++E+LERKYWKN+T+
Sbjct: 70 PIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNP 129
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
PIYGADV+G++ ++ V+ WNI L TILD V ++ GI+I+
Sbjct: 130 PIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 169
>sp|Q3U2K5|KDM4D_MOUSE Lysine-specific demethylase 4D OS=Mus musculus GN=Kdm4d PE=2 SV=2
Length = 510
Score = 190 bits (483), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 118/174 (67%), Gaps = 4/174 (2%)
Query: 59 IKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSG 118
+KT Q IM+FRPT EEF DF K+I YMESQGAH+AGLAKVIPP EW R+S
Sbjct: 1 MKTKSTCAQNPNCSIMIFRPTKEEFNDFDKYIAYMESQGAHRAGLAKVIPPKEWRARQS- 59
Query: 119 YSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYE 178
+I ++ I P+ QVV+G+ G++ Q + +K+ MTV EY +AN +Y TP H D+E
Sbjct: 60 ---YDNISNILIATPLQQVVSGQAGVFTQYHKKKKGMTVGEYRELANSKKYQTPPHLDFE 116
Query: 179 DLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
DLERKYWKN Y SPIYGADVSGS+ D WN+ HLGTI D + ++ GI I+
Sbjct: 117 DLERKYWKNRLYESPIYGADVSGSLFDGKTQQWNVGHLGTIQDLLEQECGIVIE 170
>sp|A1A5Q5|KDM4D_RAT Lysine-specific demethylase 4D OS=Rattus norvegicus GN=Kdm4d PE=2
SV=1
Length = 510
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 118/174 (67%), Gaps = 4/174 (2%)
Query: 59 IKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSG 118
+KT Q IM+FRPT EEF DF K+I YMESQGAH+AGLAKVIPP EW R+S
Sbjct: 1 MKTKSTCAQNPNCSIMIFRPTKEEFNDFDKYIAYMESQGAHRAGLAKVIPPKEWRARQS- 59
Query: 119 YSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYE 178
+I ++ I P+ QVV+G+ G++ Q + +K+ MTV +Y +AN +Y TP H D+E
Sbjct: 60 ---YDNISNILIATPLQQVVSGQAGVFTQYHKKKKAMTVGQYRHLANSKKYQTPPHLDFE 116
Query: 179 DLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
DLERKYWKN Y SPIYGADVSGS+ D WN+ HLGTI D + ++ GI I+
Sbjct: 117 DLERKYWKNRLYESPIYGADVSGSLFDGKTQQWNVGHLGTIQDLLEQECGIVIE 170
>sp|Q6B0I6|KDM4D_HUMAN Lysine-specific demethylase 4D OS=Homo sapiens GN=KDM4D PE=1 SV=3
Length = 523
Score = 183 bits (465), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 58 TIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKS 117
T+K+ Q IM+F PT EEF DF K+I YMESQGAH+AGLAK+IPP EW R++
Sbjct: 3 TMKSKANCAQNPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARET 62
Query: 118 GYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDY 177
+I ++ I P+ QV +G+ G++ Q + +K+ MTV EY +AN +Y TP H ++
Sbjct: 63 ----YDNISEILIATPLQQVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNF 118
Query: 178 EDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
EDLERKYWKN Y SPIYGAD+SGS+ DE+ WN+ HLGTI D + ++ G+ I+
Sbjct: 119 EDLERKYWKNRIYNSPIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIE 173
>sp|B2RXH2|KDM4E_HUMAN Lysine-specific demethylase 4E OS=Homo sapiens GN=KDM4E PE=1 SV=1
Length = 506
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 114/174 (65%), Gaps = 4/174 (2%)
Query: 59 IKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSG 118
+K++ Q H IM F PT EEF DF+ ++ YMESQGAH+AGLAKVIPP EW R+
Sbjct: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQ-- 58
Query: 119 YSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYE 178
+ I D+ I P+ QV +G+ G++ Q + +K+ M V +Y +AN +Y TP H ++
Sbjct: 59 --MYDDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFA 116
Query: 179 DLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
DLE++YWK+ PIYGAD+SGS+ +E WN+ HLGTILD + ++ G+ I+
Sbjct: 117 DLEQRYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIE 170
>sp|Q9U297|KDM4_CAEEL Lysine-specific demethylase 4 OS=Caenorhabditis elegans GN=jmjd-2
PE=3 SV=2
Length = 922
Score = 114 bits (285), Expect = 5e-25, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 91/158 (57%), Gaps = 6/158 (3%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAH-KAGLAKVIPPPEWVPRKSGYSLDSSIGDMSI 130
E++ F PT EFK+FS++I +E G H KAG+AK++ P W PR + S + D I
Sbjct: 86 EVLTFYPTMREFKNFSQYIKKIEQNGGHLKAGIAKIVAPEGWTPRPTRKDF-SDVDDYEI 144
Query: 131 PAPICQVV--TGKQGLYQQINIQ-KRQMTVREYGAMANKPRYATPK-HFDYEDLERKYWK 186
P + + T K G Y + N+ +R+M VRE+ +AN +Y P+ ++E+ Y+
Sbjct: 145 TQPARETIEATEKPGAYFKRNVTCRRKMPVREFRTLANSAQYRNPRPDLKGSEIEKHYFD 204
Query: 187 NITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVN 224
NI + PIYGAD GS D V WN+N LGTIL+ N
Sbjct: 205 NILHGEPIYGADTEGSFYDAQVEEWNMNRLGTILEDTN 242
>sp|P39956|RPH1_YEAST DNA damage-responsive transcriptional repressor RPH1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPH1 PE=1 SV=1
Length = 796
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
+ VF+PTYE+F+DF + + G K+G+ KVIPP EW + ++ + I +
Sbjct: 14 VPVFKPTYEQFEDFYAYCKAINKYGM-KSGVVKVIPPKEWKDKLDLPYSAETLQKIKIKS 72
Query: 133 PICQVVTGKQGLYQQINIQKR------------------------------------QMT 156
PI Q ++G +GL+ N++K ++
Sbjct: 73 PIQQHISGNKGLFMVQNVEKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSVSKSTKLK 132
Query: 157 VREYGAMANK---PRYATPKHFDYED---------LERKYWKNITYVSPIYGADVSGSIT 204
++ + + N ++ T D D LE YWK + + +P+YGAD GSI
Sbjct: 133 LKNFESSFNIDDFEQFRTEYTIDLSDFQNTERLKFLEEYYWKTLNFTTPMYGADTPGSIF 192
Query: 205 DEDVNVWNINHLGTILDYV 223
E +NVWN+ L ILD++
Sbjct: 193 PEGLNVWNVAKLPNILDHM 211
>sp|Q03833|GIS1_YEAST Transcriptional activator/repressor GIS1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GIS1 PE=1
SV=1
Length = 894
Score = 52.4 bits (124), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 28/171 (16%)
Query: 73 IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
+ VF+P+ EF +F FI + G G+ KVIPP EW+ G S+ + + +
Sbjct: 12 VPVFKPSMMEFANFQYFIDEITKFGIEN-GIVKVIPPKEWLELLEGSPPAESLKTIQLDS 70
Query: 133 PICQVV------------------TGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKH 174
PI Q L Q N+ + + G +K +
Sbjct: 71 PIQQQAKRWDKHENGVFSIENEYDNKSYNLTQWKNLAESLDSRISQGDFNDKTLKENCRV 130
Query: 175 FDYED---------LERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHL 216
+D LE +WK I + P Y D + SI D+ +WN+N+L
Sbjct: 131 DSQQDCYDLAQLQILESDFWKTIAFSKPFYAVDENSSIFPYDLTLWNLNNL 181
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2
Length = 1503
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++EEFKD FI + A K G+ KV PPP+W P
Sbjct: 14 ECPVFEPSWEEFKDPFAFINKIRPI-AEKTGICKVRPPPDWQP 55
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid
PE=1 SV=1
Length = 1838
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VFRPT EEFK+ +I+ + S A K G+AK++PP W P
Sbjct: 160 ECPVFRPTTEEFKNPLAYISKIRSI-AEKCGIAKILPPATWSP 201
>sp|Q92833|JARD2_HUMAN Protein Jumonji OS=Homo sapiens GN=JARID2 PE=1 SV=2
Length = 1246
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
EI V RP+ +EF D +I + +Q K G+ +VIPPP+W P
Sbjct: 556 EIPVLRPSAKEFHDPLIYIESVRAQ-VEKFGMCRVIPPPDWRP 597
>sp|Q62315|JARD2_MOUSE Protein Jumonji OS=Mus musculus GN=Jarid2 PE=1 SV=1
Length = 1234
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
EI V RP+ +EF D +I + +Q K G+ +VIPPP+W P
Sbjct: 554 EIPVLRPSAKEFHDPLIYIESVRAQ-VEKYGMCRVIPPPDWRP 595
>sp|Q5F363|JARD2_CHICK Protein Jumonji OS=Gallus gallus GN=JARID2 PE=2 SV=1
Length = 1233
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
EI + RP+ +EF D +I + +Q K G+ +VIPPP+W P
Sbjct: 545 EIPILRPSTKEFHDPLIYIESVRAQ-VEKYGMCRVIPPPDWRP 586
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1
Length = 1522
Score = 38.9 bits (89), Expect = 0.033, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++EEF D FI + A + G+ KV PPP+W P
Sbjct: 9 ECPVFEPSWEEFADPFAFIHKIRPI-AEQTGICKVRPPPDWQP 50
>sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3
Length = 1544
Score = 38.5 bits (88), Expect = 0.035, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++EEF D FI + A + G+ KV PPP+W P
Sbjct: 31 ECPVFEPSWEEFADPFAFIHKIRPI-AEQTGICKVRPPPDWQP 72
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1
Length = 1544
Score = 38.5 bits (88), Expect = 0.040, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++EEF D FI + A + G+ KV PPP+W P
Sbjct: 31 ECPVFEPSWEEFADPFAFIHKIRPI-AEQTGICKVRPPPDWQP 72
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2
SV=1
Length = 1545
Score = 38.5 bits (88), Expect = 0.041, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF PT+ EF+D +IT + A K+G+ K+ PP +W P
Sbjct: 13 ECPVFEPTWAEFRDPLDYITKIRPI-AEKSGICKIRPPADWQP 54
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3
Length = 1690
Score = 36.6 bits (83), Expect = 0.16, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++EEF D FI + A K G+ K+ PP +W P
Sbjct: 18 ECPVFEPSWEEFTDPLSFIGRIRPL-AEKTGICKIRPPKDWQP 59
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2
Length = 1690
Score = 36.2 bits (82), Expect = 0.22, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++EEF D FI + A K G+ K+ PP +W P
Sbjct: 18 ECPVFEPSWEEFTDPLSFIGRIRP-FAEKTGICKIRPPKDWQP 59
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2
Length = 1548
Score = 34.7 bits (78), Expect = 0.56, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++ EF+D +I + A K+G+ K+ PP +W P
Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPI-AEKSGICKIRPPADWQP 54
>sp|P41230|KDM5C_MOUSE Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4
Length = 1554
Score = 34.7 bits (78), Expect = 0.63, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++ EF+D +I + A K+G+ K+ PP +W P
Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPI-AEKSGICKIRPPADWQP 54
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2
SV=1
Length = 1556
Score = 34.7 bits (78), Expect = 0.64, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++ EF+D +I + A K+G+ K+ PP +W P
Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPI-AEKSGICKIRPPADWQP 54
>sp|Q5XUN4|KDM5D_PANTR Lysine-specific demethylase 5D OS=Pan troglodytes GN=KDM5D PE=2
SV=1
Length = 1535
Score = 34.3 bits (77), Expect = 0.68, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++ EF+D +I + A K+G+ K+ PP +W P
Sbjct: 13 ECPVFEPSWAEFQDPLGYIAKIRPI-AEKSGICKIRPPADWQP 54
>sp|P41229|KDM5C_HUMAN Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2
Length = 1560
Score = 34.3 bits (77), Expect = 0.68, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++ EF+D +I + A K+G+ K+ PP +W P
Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPI-AEKSGICKIRPPADWQP 54
>sp|A1YVX4|KDM5C_PIG Lysine-specific demethylase 5C OS=Sus scrofa GN=KDM5C PE=2 SV=1
Length = 1516
Score = 34.3 bits (77), Expect = 0.68, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++ EF+D +I + A K+G+ K+ PP +W P
Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPI-AEKSGICKIRPPADWQP 54
>sp|Q9BY66|KDM5D_HUMAN Lysine-specific demethylase 5D OS=Homo sapiens GN=KDM5D PE=1 SV=2
Length = 1539
Score = 34.3 bits (77), Expect = 0.71, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
E VF P++ EF+D +I + A K+G+ K+ PP +W P
Sbjct: 13 ECPVFEPSWAEFQDPLGYIAKIRPI-AEKSGICKIRPPADWQP 54
>sp|Q1LVC2|JARD2_DANRE Protein Jumonji OS=Danio rerio GN=jarid2b PE=3 SV=2
Length = 1319
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
++ +F+P+ EF+D ++ Q GL +V+PP +W P
Sbjct: 606 DVPIFKPSSREFQDPLVYLDSFREQ-VESCGLCRVLPPTDWRP 647
>sp|Q9UT79|MSC1_SCHPO Multicopy suppressor of chk1 protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=msc1 PE=4 SV=1
Length = 1588
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 70 KHEIMV-FRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEW 112
K EI V P EEF FI+ + Q A K+G +VIPP W
Sbjct: 78 KEEINVRVTPKKEEFSRGLDFISDLYDQTARKSGAVRVIPPDNW 121
>sp|B8GQ75|ENO_THISH Enolase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=eno PE=3 SV=1
Length = 426
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 98 AHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTV 157
AHKAG VI +SG + D +I D+S+ Q+ TG L + + K +
Sbjct: 353 AHKAGYTAVIS------HRSGETEDVTIADLSVATQAGQIKTGS--LSRSDRVAKYNQLI 404
Query: 158 REYGAMANKPRYATPKHF 175
R A+ + RYA F
Sbjct: 405 RIEEALGSAARYAGRGAF 422
>sp|B8EIA7|IF2_METSB Translation initiation factor IF-2 OS=Methylocella silvestris
(strain BL2 / DSM 15510 / NCIMB 13906) GN=infB PE=3 SV=1
Length = 886
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 35/83 (42%)
Query: 2 ASSSEDFEPSPPAKKKTKAAATGKGAKKKPRTPSKKTKVVKEKAESGVQEEGEVKSTIKT 61
S++ +P P + A AK+ R P TKV+ + G +++ + T+ +
Sbjct: 208 GSAAPSGQPGPAGAVGARPAEEEDAAKRIIRRPGMPTKVIVARPVKGAEQKSRGRLTVAS 267
Query: 62 LLPVKQERKHEIMVFRPTYEEFK 84
++ER I FR + K
Sbjct: 268 ATGDEEERTRSIAAFRRRTQRLK 290
>sp|Q9US53|JMJ2_SCHPO Jumonji/ARID domain-containing protein 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=jmj2 PE=4 SV=1
Length = 715
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 75 VFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
VF P EEF+D +I + G K G+ K++PP W P
Sbjct: 62 VFYPDKEEFQDSIGYINKIAPIG-EKYGIIKIVPPAGWNP 100
>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio
GN=pds5a PE=2 SV=1
Length = 1320
Score = 32.3 bits (72), Expect = 3.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1 GASSSEDFEPSPPAKKKTKAAATGKGAKKKPRTPSKKTKVVKEKAESGVQEEGEVKS 57
G+++S + +PS PA K++ ++ GA++ P TK V K E Q G ++
Sbjct: 1164 GSNASTNSQPSSPATNKSRDVSSEVGARENEENPV-ITKAVSVKKEEAAQPSGRKRA 1219
>sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana
GN=JMJ14 PE=1 SV=1
Length = 954
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 75 VFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
+F PT E+F D +I + S+ A G+ +++PP W P
Sbjct: 58 IFYPTNEDFDDPLGYIEKLRSK-AESYGICRIVPPVAWRP 96
>sp|Q6BDA0|ELF6_ARATH Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana
GN=ELF6 PE=1 SV=1
Length = 1340
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 75 VFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPP-PEWVPRKSGYSLDSSI 125
VFRPT EF D +I+ +E + A G+ K+IPP P+ + Y+L+ S+
Sbjct: 18 VFRPTDTEFADPIAYISKIEKE-ASAFGICKIIPPLPKPSKKYVFYNLNKSL 68
>sp|P13463|VIRD3_AGRRH Protein virD3 OS=Agrobacterium rhizogenes GN=virD3 PE=4 SV=1
Length = 678
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 108 PPPEWVPRKSGYSLDSSIGDMSIPAPI 134
PP EWV R +GY D + GD +I API
Sbjct: 225 PPSEWVGRDTGYETDRNSGD-TISAPI 250
>sp|P07003|POXB_ECOLI Pyruvate dehydrogenase [ubiquinone] OS=Escherichia coli (strain
K12) GN=poxB PE=1 SV=1
Length = 572
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 53 GEVKSTIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEW 112
G++KST++ LLP+ +E K + E+++D K + + K I P
Sbjct: 310 GDIKSTLRALLPLVEE-KADRKFLDKALEDYRDARKGLDDLAKPS------EKAIHPQYL 362
Query: 113 VPRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMAN 165
+ S ++ D +I + P T Y ++N ++R + +G+MAN
Sbjct: 363 AQQISHFAADDAIFTCDVGTP-----TVWAARYLKMNGKRRLLGSFNHGSMAN 410
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,918,705
Number of Sequences: 539616
Number of extensions: 3941798
Number of successful extensions: 13077
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 12754
Number of HSP's gapped (non-prelim): 343
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)