Query psy9595
Match_columns 232
No_of_seqs 153 out of 450
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 23:44:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0958|consensus 100.0 2E-51 4.4E-56 401.9 11.0 164 63-232 5-170 (690)
2 smart00545 JmjN Small domain f 99.8 1.7E-20 3.7E-25 126.8 4.3 42 72-114 1-42 (42)
3 PF02375 JmjN: jmjN domain; I 99.7 3.7E-17 8E-22 106.1 3.0 34 74-108 1-34 (34)
4 KOG1246|consensus 97.7 3.7E-05 8E-10 79.7 5.6 153 70-224 87-322 (904)
5 PHA02053 hypothetical protein 49.2 6.3 0.00014 31.8 0.3 22 209-230 94-115 (115)
6 COG2461 Uncharacterized conser 48.7 14 0.0003 36.2 2.5 45 70-117 197-241 (409)
7 smart00558 JmjC A domain famil 22.2 32 0.00069 23.3 0.2 15 210-224 2-19 (57)
8 COG5423 Predicted metal-bindin 19.1 1E+02 0.0023 26.7 2.7 51 38-88 5-66 (167)
9 PF15231 VCX_VCY: Variable cha 19.0 75 0.0016 26.8 1.7 28 5-34 23-55 (147)
10 KOG0925|consensus 14.0 71 0.0015 32.8 0.5 58 51-109 233-292 (699)
No 1
>KOG0958|consensus
Probab=100.00 E-value=2e-51 Score=401.94 Aligned_cols=164 Identities=58% Similarity=0.973 Sum_probs=156.1
Q ss_pred ccCCCCCCCCCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCCCCCCCccccccCcccccCCcceeeecCC
Q psy9595 63 LPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVVTGKQ 142 (232)
Q Consensus 63 ~~~~~~~~~~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p~~~~~~~~~~l~~~~I~~PI~Q~v~G~~ 142 (232)
.++..++.++|||||||||||+||..||++|+++|+|++||+|||||++|+||..++| +++++|++||||+++|+.
T Consensus 5 ~~s~i~ps~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~~~d----i~di~I~~PiqQ~v~g~~ 80 (690)
T KOG0958|consen 5 ASSEINPSDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLMYDD----IDDIKIPAPIQQVVTGQG 80 (690)
T ss_pred cccccCCCCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCcccccCc----hhheecChhHHHHhhccC
Confidence 3446777899999999999999999999999999998999999999999999987553 678999999999999999
Q ss_pred ceEEEEeec-CCCCCHHHHHHHhcCCCCCCCC-CCChHHHHHHHHhhhCCCCCeeeccCCCCCCCCCCCccccCCcchHH
Q psy9595 143 GLYQQINIQ-KRQMTVREYGAMANKPRYATPK-HFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTIL 220 (232)
Q Consensus 143 Gvy~q~nie-kk~yT~~eFk~lA~~~~~~~P~-~~d~~eLEr~yWk~v~~~~P~YGADv~GSlFd~~~~~WNl~~L~slL 220 (232)
|+|+|+|++ ++.||++||+.||++.+||+|+ ++|++|||++|||+|+|++|+||||+.||||+.++..|||++|++||
T Consensus 81 G~F~~~Ni~~~kam~v~q~r~lAns~~y~tpr~~~d~~dle~kYWKnltf~~PiYGaD~~gSi~~~~~~~WNi~~L~til 160 (690)
T KOG0958|consen 81 GLFTQYNIQDKKAMTVRQFRDLANSDKYCTPRGSQDFEDLEQKYWKNLTFDSPIYGADINGSIYDEDLDEWNIARLDTIL 160 (690)
T ss_pred ceEEEeehhhccccChhhhhhhhhhcccCCCcccccHHHHHHHHHhcccCCCCcccccCCCccCcccccccccccccchh
Confidence 999999999 7899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcCC
Q psy9595 221 DYVNEDYGISID 232 (232)
Q Consensus 221 ~~l~~~~Gi~i~ 232 (232)
|+ ++||+.|+
T Consensus 161 d~--~~~~~~i~ 170 (690)
T KOG0958|consen 161 DL--EECGIIIE 170 (690)
T ss_pred ch--hhcceeec
Confidence 99 99999986
No 2
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=99.81 E-value=1.7e-20 Score=126.83 Aligned_cols=42 Identities=50% Similarity=0.876 Sum_probs=40.2
Q ss_pred CCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCC
Q psy9595 72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114 (232)
Q Consensus 72 ~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p 114 (232)
+||||+||+|||+||+.||++|+++| ++|||||||||.+|+|
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~-~~yGi~KIvPP~~w~p 42 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKIRPQA-EKYGICKVVPPKSWKP 42 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHHHHHH-hhCCEEEEECCCCCCc
Confidence 69999999999999999999999998 5999999999999986
No 3
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.66 E-value=3.7e-17 Score=106.08 Aligned_cols=34 Identities=50% Similarity=0.854 Sum_probs=27.3
Q ss_pred CeeccChHhhhCHHHHHHHHHhhccccCCceeecC
Q psy9595 74 MVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIP 108 (232)
Q Consensus 74 PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIP 108 (232)
||||||+|||+||+.||++|+++|+ ++|||||||
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~-~~Gi~KIvP 34 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGE-KYGICKIVP 34 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTG-GGSEEEE--
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHH-HCCEEEecC
Confidence 8999999999999999999999996 999999998
No 4
>KOG1246|consensus
Probab=97.74 E-value=3.7e-05 Score=79.72 Aligned_cols=153 Identities=20% Similarity=0.366 Sum_probs=99.0
Q ss_pred CCCCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCCCCCCCccccccCcccccCC-ccee-----ee---c
Q psy9595 70 KHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAP-ICQV-----VT---G 140 (232)
Q Consensus 70 ~~~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p~~~~~~~~~~l~~~~I~~P-I~Q~-----v~---G 140 (232)
....+.+.+.-..|.+...|+..+...+. .+|+|.++||..|.+..+.-+... ..+-.+.+. +++. .+ +
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~ 164 (904)
T KOG1246|consen 87 SNLKPLLLSIPKNFKDKLLYISKLKLRAE-FYGICEKLPPPTSKPKEPLKGKQN-WFSSGFDQREVEFIDYPQCNTCSKG 164 (904)
T ss_pred ccccccccccCccccchhhcccccccccc-ccccccccCCcccCCCCcCCcccc-cccCCCCCcccccccchhhhccccC
Confidence 45567788888999999999999999984 999999999999998765321100 011111111 1110 00 1
Q ss_pred ---------------------------CCceEEE--------------Eeec--CCCCCHHHHHHHhcCCCCC---CCCC
Q psy9595 141 ---------------------------KQGLYQQ--------------INIQ--KRQMTVREYGAMANKPRYA---TPKH 174 (232)
Q Consensus 141 ---------------------------~~Gvy~q--------------~nie--kk~yT~~eFk~lA~~~~~~---~P~~ 174 (232)
..|.+.+ ..++ .+.||+..|.++|+.++.. .+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~~~~~~~~~~~ 244 (904)
T KOG1246|consen 165 KEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNFKKDYFPKSKN 244 (904)
T ss_pred CCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhhhhccccccccC
Confidence 1111110 0112 2579999999999987532 2222
Q ss_pred C--ChHHHHHHHHhhhCC----CCCeeeccCCCC----CCCCC--------------CCccccCCcc----hHHHHHH
Q psy9595 175 F--DYEDLERKYWKNITY----VSPIYGADVSGS----ITDED--------------VNVWNINHLG----TILDYVN 224 (232)
Q Consensus 175 ~--d~~eLEr~yWk~v~~----~~P~YGADv~GS----lFd~~--------------~~~WNl~~L~----slL~~l~ 224 (232)
. +.+++|++||+.+.. ..++||||+..+ .|+.. .++|||++++ ++|.++.
T Consensus 245 ~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~~~~~y~~s~wnL~~i~~~~~svl~~~~ 322 (904)
T KOG1246|consen 245 SPDSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGSEAEKYSNSGWNLNNIPRLEGSVLSHID 322 (904)
T ss_pred CCCchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCcchhhhccCcccccccccCCcccccccc
Confidence 2 267999999999975 356899999744 44431 3699999985 6676665
No 5
>PHA02053 hypothetical protein
Probab=49.21 E-value=6.3 Score=31.84 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.9
Q ss_pred CccccCCcchHHHHHHhhcCCc
Q psy9595 209 NVWNINHLGTILDYVNEDYGIS 230 (232)
Q Consensus 209 ~~WNl~~L~slL~~l~~~~Gi~ 230 (232)
--|||.||+.+...+..+.||+
T Consensus 94 VmWnLMHlDk~iw~vl~eeg~~ 115 (115)
T PHA02053 94 VMWNLMHLDKLIWEVLSEEGIK 115 (115)
T ss_pred HHHHHHHHHHHHHHHHHHccCC
Confidence 3799999999999999999984
No 6
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=48.71 E-value=14 Score=36.19 Aligned_cols=45 Identities=27% Similarity=0.534 Sum_probs=34.9
Q ss_pred CCCCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCCCCC
Q psy9595 70 KHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKS 117 (232)
Q Consensus 70 ~~~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p~~~ 117 (232)
.-+-.+|+||.-+--+.-.| ..|+.+. ...|-|||.|| .|.|+..
T Consensus 197 FkEe~Ilypt~~d~~te~ew-~~i~~~~-~eigy~~i~p~-~w~p~~~ 241 (409)
T COG2461 197 FKEENILYPTLLDLLTEGEW-EAIKEQS-KEIGYAKIKPP-KWKPKKE 241 (409)
T ss_pred HhhhhhHHhHHHHhcCHHHH-HHHHhcC-cccceEEecCc-cccCccc
Confidence 45677899998877665554 4566666 59999999999 9999875
No 7
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=22.22 E-value=32 Score=23.33 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=13.4
Q ss_pred ccccCCcc---hHHHHHH
Q psy9595 210 VWNINHLG---TILDYVN 224 (232)
Q Consensus 210 ~WNl~~L~---slL~~l~ 224 (232)
.||+++|+ +||+.+.
T Consensus 2 ~~~l~~lP~~~~ll~~~~ 19 (57)
T smart00558 2 LNNLAKLPFKLNLLSDLP 19 (57)
T ss_pred cchhhhCCCcchHHHHCC
Confidence 69999999 9998886
No 8
>COG5423 Predicted metal-binding protein [Function unknown]
Probab=19.06 E-value=1e+02 Score=26.66 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=32.8
Q ss_pred chhhhhhhhcCcc-cccccc-cccc--------ccc-cCCCCCCCCCCeeccChHhhhCHHH
Q psy9595 38 TKVVKEKAESGVQ-EEGEVK-STIK--------TLL-PVKQERKHEIMVFRPTYEEFKDFSK 88 (232)
Q Consensus 38 ~~~~~~~~~~~~~-~~~~~~-~~~~--------~~~-~~~~~~~~~~PvF~PT~eEF~df~~ 88 (232)
.||.-++|..|.. ....|+ .||. -.. +..|.....||=.-||++||+.+++
T Consensus 5 ~kflv~ka~em~~lea~~v~a~di~ve~R~~~KC~~gC~~YGkrlsCPPhvps~~Efreilk 66 (167)
T COG5423 5 KKFLVIKAKEMEVLEAREVEAKDIVVEPRPVWKCRTGCRSYGKRLSCPPHVPSIEEFREILK 66 (167)
T ss_pred hhHHHHHHhhcceeEEEEccccceeeccccchhhcccccccCCCCCCCCCCCCHHHHHHHHH
Confidence 4677778887763 333444 2331 112 3456667889999999999987654
No 9
>PF15231 VCX_VCY: Variable charge X/Y family
Probab=18.97 E-value=75 Score=26.76 Aligned_cols=28 Identities=50% Similarity=0.695 Sum_probs=16.9
Q ss_pred CCCCCCCCchh-----hcccccccCcCCCCCCCCC
Q psy9595 5 SEDFEPSPPAK-----KKTKAAATGKGAKKKPRTP 34 (232)
Q Consensus 5 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 34 (232)
|..-.||.|.| ||-||++-|||.|| |++
T Consensus 23 ssq~~ps~Pkk~~k~~kkGKa~~ggRg~KK--~Aa 55 (147)
T PF15231_consen 23 SSQPSPSSPKKTPKVAKKGKAGRGGRGGKK--RAA 55 (147)
T ss_pred cCCCCCCCCccccchhhccccccCcccccc--chh
Confidence 33445665544 56677777777655 566
No 10
>KOG0925|consensus
Probab=14.04 E-value=71 Score=32.81 Aligned_cols=58 Identities=28% Similarity=0.445 Sum_probs=47.6
Q ss_pred ccccccccccccccCCCCC-CCCCCeeccChHhhhCHHHHHH-HHHhhccccCCceeecCC
Q psy9595 51 EEGEVKSTIKTLLPVKQER-KHEIMVFRPTYEEFKDFSKFIT-YMESQGAHKAGLAKVIPP 109 (232)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~-~~~~PvF~PT~eEF~df~~Yi~-~i~~~ga~~~GI~KIIPP 109 (232)
..+++++-|.+++.-+... ..+|-||-+..||..+-.+=|. .+..++. +.|=.||||=
T Consensus 233 erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~-~~g~l~v~PL 292 (699)
T KOG0925|consen 233 ERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGP-QVGPLKVVPL 292 (699)
T ss_pred ChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhcc-ccCCceEEec
Confidence 3567888888888755443 6789999999999999888876 8899995 9999999973
Done!