Query psy9595
Match_columns 232
No_of_seqs 153 out of 450
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 23:44:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dxt_A JMJC domain-containing 100.0 9.6E-54 3.3E-58 395.9 16.2 170 59-232 4-173 (354)
2 3opt_A DNA damage-responsive t 100.0 2.3E-50 8E-55 375.3 8.9 166 60-230 3-219 (373)
3 2ox0_A JMJC domain-containing 100.0 2.6E-48 9E-53 362.7 15.7 169 58-231 22-190 (381)
4 4gqr_A Pancreatic alpha-amylas 15.8 69 0.0024 28.3 2.2 19 39-57 30-48 (496)
5 1914_A Signal recognition part 15.0 35 0.0012 29.7 0.1 17 71-87 144-160 (232)
6 2amw_A Hypothetical protein NE 12.7 1E+02 0.0034 21.0 1.9 26 207-232 33-58 (83)
7 2kci_A Putative acyl carrier p 11.0 1.7E+02 0.0058 20.9 2.8 31 201-232 25-55 (87)
8 2rqw_B 24-meric peptide from s 9.9 1.7E+02 0.0057 17.3 1.9 17 2-18 2-18 (26)
9 1jh4_B PAIP1, polyadenylate-bi 9.1 1.2E+02 0.0041 17.9 1.0 10 70-79 7-16 (26)
10 2it9_A Hypothetical protein; s 7.5 1.8E+02 0.006 23.2 1.7 22 76-97 32-53 (127)
No 1
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=100.00 E-value=9.6e-54 Score=395.91 Aligned_cols=170 Identities=51% Similarity=0.921 Sum_probs=155.5
Q ss_pred ccccccCCCCCCCCCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCCCCCCCccccccCcccccCCcceee
Q psy9595 59 IKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVV 138 (232)
Q Consensus 59 ~~~~~~~~~~~~~~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p~~~~~~~~~~l~~~~I~~PI~Q~v 138 (232)
++......+++.++|||||||+|||+||.+||++|+++|+|++||||||||++|++|.+.. ++++++|++||+|++
T Consensus 4 ~~~~~~~~~~~~~~ipvF~PT~eEF~df~~Yi~~ie~~Ga~~~Gi~KIIPP~~W~~r~~~~----~~~~~~i~~pi~q~~ 79 (354)
T 3dxt_A 4 MKSKANCAQNPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYD----NISEILIATPLQQVA 79 (354)
T ss_dssp -------CCCTTCCCEEECCCTTGGGCHHHHHHHHHHTTGGGGSEEEECCCTTCCSSSCST----TCTTCEESSCEEEEE
T ss_pred cccCCCCCCCCCCCcceecCCHHHHhCHHHHHHHHHhccccccCcccccCcccccCccccc----chhcccccCCceeee
Confidence 4444556678899999999999999999999999999999999999999999999998633 367899999999999
Q ss_pred ecCCceEEEEeecCCCCCHHHHHHHhcCCCCCCCCCCChHHHHHHHHhhhCCCCCeeeccCCCCCCCCCCCccccCCcch
Q psy9595 139 TGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGT 218 (232)
Q Consensus 139 ~G~~Gvy~q~niekk~yT~~eFk~lA~~~~~~~P~~~d~~eLEr~yWk~v~~~~P~YGADv~GSlFd~~~~~WNl~~L~s 218 (232)
+|++|+|+|+|+++|.||+.||+++|++.++++|.+.++++|||+|||++++.+|+||||+.||+|++++++|||++|++
T Consensus 80 ~g~~G~~~~~~~~~k~~t~~~f~~~a~~~~~~~p~~~~~~~lE~~fW~~~~~~~p~YgaD~~gS~F~~~~~~WNL~~L~~ 159 (354)
T 3dxt_A 80 SGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNSPIYGADISGSLFDENTKQWNLGHLGT 159 (354)
T ss_dssp EEETTEEEEEEEECCCEEHHHHHHHHTSTTTSCCCCSSHHHHHHHHHHHGGGCCCEEEEEEECCCSCTTCCSSCTTSSCC
T ss_pred cCCCceEEEeeeccCccCHHHHHHHHhhhhccCCCCCCHHHHHHHHhhhcccCCceeeecCCCcccCCCcchhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcCC
Q psy9595 219 ILDYVNEDYGISID 232 (232)
Q Consensus 219 lL~~l~~~~Gi~i~ 232 (232)
||+.|++++|+.|.
T Consensus 160 ~~~~Ll~~~~~~I~ 173 (354)
T 3dxt_A 160 IQDLLEKECGVVIE 173 (354)
T ss_dssp HHHHHHHHHCCCCC
T ss_pred hhHHHHhhcCCCCC
Confidence 99999999887763
No 2
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=100.00 E-value=2.3e-50 Score=375.28 Aligned_cols=166 Identities=34% Similarity=0.698 Sum_probs=133.9
Q ss_pred cccccCCCCCCCCCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCCCCCCCccccccCcccccCCcceeee
Q psy9595 60 KTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVVT 139 (232)
Q Consensus 60 ~~~~~~~~~~~~~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p~~~~~~~~~~l~~~~I~~PI~Q~v~ 139 (232)
+.+.|++++ ++|||||||||||+||..||++|+++|| ++||||||||++|++++......+.|.+++|++||+|+++
T Consensus 3 ~~~~p~~~~--~~~pVF~PT~eeF~dF~~yi~~i~~~g~-~~Gi~KVIPPkeW~~~~~~~~~~~~l~~~~i~~PI~Q~~~ 79 (373)
T 3opt_A 3 KLIAPSEIV--GGVPVFKPTYEQFEDFYAYCKAINKYGM-KSGVVKVIPPKEWKDKLDLPYSAETLQKIKIKSPIQQHIS 79 (373)
T ss_dssp ---CCCSEE--SSSEEECCCHHHHTCHHHHHHTTHHHHT-TSSEEEECCCHHHHTTSCSSCCHHHHHHCEEESCEEEEEE
T ss_pred cccCccccc--CCCCeeCCCHHHHhCHHHHHHHHHHhcc-ccCeEEEeCchhhhhcccCCCcHhHHhcCcCCCCcEEEec
Confidence 456777775 7799999999999999999999999997 9999999999999999864433346889999999999999
Q ss_pred cCCceEEEEeecC-CCCCHHHHHHHhcCCCCCCCCC--------------------------------------------
Q psy9595 140 GKQGLYQQINIQK-RQMTVREYGAMANKPRYATPKH-------------------------------------------- 174 (232)
Q Consensus 140 G~~Gvy~q~niek-k~yT~~eFk~lA~~~~~~~P~~-------------------------------------------- 174 (232)
|++|+|+|+|+++ |+||+.||+.||++ |++|++
T Consensus 80 G~~G~~~~~nie~~r~~~~~q~k~l~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (373)
T 3opt_A 80 GNKGLFMVQNVEKNKTYNIIQWKDLSKD--YVPPEDPKARRNSRKGSVSKSTKLKLKNFESSFNIDDFEQFRTEYTIDLS 157 (373)
T ss_dssp ESSSEEEEEEEECSCEEEHHHHHHHTTS--SCCCCC------------------------CCCCHHHHHHHTTTSSCCCT
T ss_pred CCCceEEEeeeccccccCHHHHHHhhhh--cCCCcccccccccccccccccccccccccccccchHHHHHHHHhhccchh
Confidence 9999999999998 68999999999974 444430
Q ss_pred -C-C---hHHHHHHHHhhhCCCCCeeeccCCCCCCCCCCCccccCCcchHHHHHHhh-cCCc
Q psy9595 175 -F-D---YEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNED-YGIS 230 (232)
Q Consensus 175 -~-d---~~eLEr~yWk~v~~~~P~YGADv~GSlFd~~~~~WNl~~L~slL~~l~~~-~Gi~ 230 (232)
+ + +++||++|||+|++++|+||||+.||+|++++++|||++|++||++|+++ .||+
T Consensus 158 ~~~~~~~~~~lE~~yW~~~~~~~p~YgaD~~GS~F~~~~~~WNL~~Lp~lL~~l~~~I~GVn 219 (373)
T 3opt_A 158 DFQNTERLKFLEEYYWKTLNFTTPMYGADTPGSIFPEGLNVWNVAKLPNILDHMETKVPGVN 219 (373)
T ss_dssp TSSCHHHHHHHHHHHHHTTTTSCCEEEEEEECCCSCTTCCSSCTTSCC--------------
T ss_pred hccCcchHHHHHHHHHHhccCCCceEecCCCCCCcCCCCCccChhhhhhHHHHhcccCCCcc
Confidence 1 1 46899999999999999999999999999999999999999999999754 3443
No 3
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=100.00 E-value=2.6e-48 Score=362.70 Aligned_cols=169 Identities=53% Similarity=0.954 Sum_probs=154.0
Q ss_pred cccccccCCCCCCCCCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCCCCCCCccccccCcccccCCccee
Q psy9595 58 TIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQV 137 (232)
Q Consensus 58 ~~~~~~~~~~~~~~~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p~~~~~~~~~~l~~~~I~~PI~Q~ 137 (232)
.+++. .+.+++.++|||||||+|||+||++||++|+++|||++||||||||.+|+|++... .+++++|++||+|+
T Consensus 22 ~~~~~-~~~~~~~~~iPVF~PT~EEF~Df~~YI~kIe~~gA~~~GI~KIIPP~~W~p~~~~~----~~~~~~i~~piqQ~ 96 (381)
T 2ox0_A 22 SMASE-SETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYD----DIDDLVIPAPIQQL 96 (381)
T ss_dssp --------CCSTTCCCEEECCCHHHHSCHHHHHHHHHHTTGGGGSEEEECCCTTCCSCSCST----TCTTCEESSCEEEE
T ss_pred hhccc-cCCCCCCCCCceEcCCHHHHhCHHHHHHHHHhccccccCceeecCCccCCCccccc----hhhhcccCCcceee
Confidence 34444 45677889999999999999999999999999998999999999999999998643 36779999999999
Q ss_pred eecCCceEEEEeecCCCCCHHHHHHHhcCCCCCCCCCCChHHHHHHHHhhhCCCCCeeeccCCCCCCCCCCCccccCCcc
Q psy9595 138 VTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLG 217 (232)
Q Consensus 138 v~G~~Gvy~q~niekk~yT~~eFk~lA~~~~~~~P~~~d~~eLEr~yWk~v~~~~P~YGADv~GSlFd~~~~~WNl~~L~ 217 (232)
++|+.|+|+++|++++.||+.+|+++|++++++.|.+.++++||++|||+|++.+|+||||+.||+|+.++++|||++|+
T Consensus 97 ~~g~~g~~~~~~~~~k~~tl~~f~~~a~~~~~~~p~~~~~~~lE~~fWr~v~~~~~~YgaD~~gS~f~~~~~~WNL~~Lp 176 (381)
T 2ox0_A 97 VTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNPPIYGADVNGTLYEKHVDEWNIGRLR 176 (381)
T ss_dssp EEEETTEEEEEEEECCCEEHHHHHHHHHSTTTSCCCCSSHHHHHHHHHHHTTSSCCEEEEEEECCCSCTTCCSSCTTCCC
T ss_pred ecCCCcccccccccccccCHHHHHHHhcccccCCCccCCHHHHHHHHHhhCCcCCceeecCCCcccCCCCCCCCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCcC
Q psy9595 218 TILDYVNEDYGISI 231 (232)
Q Consensus 218 slL~~l~~~~Gi~i 231 (232)
++|+.|.++.|..|
T Consensus 177 ~ll~~ll~~~~~~I 190 (381)
T 2ox0_A 177 TILDLVEKESGITI 190 (381)
T ss_dssp CGGGHHHHHHCCCC
T ss_pred hHHHHHHHhcCCCC
Confidence 99999999888766
No 4
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=15.77 E-value=69 Score=28.27 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.6
Q ss_pred hhhhhhhhcCccccccccc
Q psy9595 39 KVVKEKAESGVQEEGEVKS 57 (232)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~ 57 (232)
..+.+.++++|++.|..+.
T Consensus 30 ~yl~~~G~~~v~~~P~~e~ 48 (496)
T 4gqr_A 30 RYLAPKGFGGVQVSPPNEN 48 (496)
T ss_dssp HTTTTTTCCEEEECCCSCB
T ss_pred HHHHHhCCCEEEeCccccC
Confidence 4577888999999998874
No 5
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=15.00 E-value=35 Score=29.75 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=8.8
Q ss_pred CCCCeeccChHhhhCHH
Q psy9595 71 HEIMVFRPTYEEFKDFS 87 (232)
Q Consensus 71 ~~~PvF~PT~eEF~df~ 87 (232)
.-.|||..||+||..=.
T Consensus 144 ~~~M~y~~sw~eF~~~s 160 (232)
T 1914_A 144 GSPMPQFQTWEEFSRAA 160 (232)
T ss_dssp ------CCSHHHHHHHH
T ss_pred cCceeeeCCHHHHHHHH
Confidence 45689999999996533
No 6
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=12.75 E-value=1e+02 Score=21.01 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=18.0
Q ss_pred CCCccccCCcchHHHHHHhhcCCcCC
Q psy9595 207 DVNVWNINHLGTILDYVNEDYGISID 232 (232)
Q Consensus 207 ~~~~WNl~~L~slL~~l~~~~Gi~i~ 232 (232)
++..|+-=.+-.|+-.+++++||+|+
T Consensus 33 dlg~~DSl~~~elv~~lE~~fgi~i~ 58 (83)
T 2amw_A 33 NIPELDSMAVVNVITALEEYFDFSVD 58 (83)
T ss_dssp TSTTTTHHHHHHHHHHHHHHTTCCCC
T ss_pred ccCccCHHHHHHHHHHHHHHhCCeeC
Confidence 34556555555778888888888874
No 7
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=11.00 E-value=1.7e+02 Score=20.95 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=21.9
Q ss_pred CCCCCCCCCccccCCcchHHHHHHhhcCCcCC
Q psy9595 201 GSITDEDVNVWNINHLGTILDYVNEDYGISID 232 (232)
Q Consensus 201 GSlFd~~~~~WNl~~L~slL~~l~~~~Gi~i~ 232 (232)
.+-|.++. +|.-=.+=.|+-.+++++||+|+
T Consensus 25 d~~l~~dl-g~DSL~~veli~~lE~eF~I~i~ 55 (87)
T 2kci_A 25 ETSANDID-AWDSLSHMNLIVSLEVHYKIKFA 55 (87)
T ss_dssp TCCSTTCC-CCCSTHHHHHHHHHHHHHTCCCC
T ss_pred CCCccccc-CCChHHHHHHHHHHHHHHCCccC
Confidence 44454433 67665666788999999999884
No 8
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=9.94 E-value=1.7e+02 Score=17.30 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCchhhcc
Q psy9595 2 ASSSEDFEPSPPAKKKT 18 (232)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (232)
.++.|.|-|+-||-|-.
T Consensus 2 ~~~~eKFiPsRPAPKPP 18 (26)
T 2rqw_B 2 SSANGKFIPSRPAPKPP 18 (26)
T ss_dssp CCCCCSSCCSSCCCCCS
T ss_pred cccccccccCCCCCCCC
Confidence 46789999999998755
No 9
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=9.13 E-value=1.2e+02 Score=17.94 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=7.5
Q ss_pred CCCCCeeccC
Q psy9595 70 KHEIMVFRPT 79 (232)
Q Consensus 70 ~~~~PvF~PT 79 (232)
...+|+|+|+
T Consensus 7 S~~ApeF~Ps 16 (26)
T 1jh4_B 7 SVNAPEFYPS 16 (26)
T ss_dssp SCCCSCCCCT
T ss_pred CcCCceeccC
Confidence 4667888886
No 10
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=7.50 E-value=1.8e+02 Score=23.18 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=18.2
Q ss_pred eccChHhhhCHHHHHHHHHhhc
Q psy9595 76 FRPTYEEFKDFSKFITYMESQG 97 (232)
Q Consensus 76 F~PT~eEF~df~~Yi~~i~~~g 97 (232)
|.=|..||.||.+.+..+..+-
T Consensus 32 iELTe~E~~~f~~Ll~qL~~~~ 53 (127)
T 2it9_A 32 IELDKSEWKILVEVVMELCDQY 53 (127)
T ss_dssp EEECHHHHHHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHHHHHHHHHHHH
Confidence 4558999999999999887654
Done!