RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9595
         (232 letters)



>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain,
           N-terminal (CoA-binding) domain {Escherichia coli
           [TaxId: 562]}
          Length = 119

 Score = 26.7 bits (59), Expect = 1.2
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 9/71 (12%)

Query: 134 ICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVSP 193
           ICQ  TG QG +        Q     YG         TP       L    +  +     
Sbjct: 10  ICQGFTGSQGTFHS-----EQA--IAYG--TKMVGGVTPGKGGTTHLGLPVFNTVREAVA 60

Query: 194 IYGADVSGSIT 204
             GA  S    
Sbjct: 61  ATGATASVIYV 71


>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain,
           N-terminal (CoA-binding) domain {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 130

 Score = 24.8 bits (54), Expect = 6.1
 Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 9/72 (12%)

Query: 134 ICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVSP 193
           ICQ  TGKQG +       +Q    EYG   N     TP       L    +  +     
Sbjct: 19  ICQGFTGKQGTFHS-----QQA--LEYG--TNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 69

Query: 194 IYGADVSGSITD 205
             GA  S     
Sbjct: 70  QTGATASVIYVP 81


>d1w8ia_ c.120.1.1 (A:) Hypothetical protein AF1683 {Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 155

 Score = 24.6 bits (53), Expect = 8.4
 Identities = 5/25 (20%), Positives = 9/25 (36%)

Query: 173 KHFDYEDLERKYWKNITYVSPIYGA 197
             F    + R YWK++        +
Sbjct: 122 SRFSLPTIGRDYWKSLDESERKRIS 146


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 874,413
Number of extensions: 40514
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 6
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.6 bits)