BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9598
(1915 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 76/103 (73%)
Query: 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPI 176
NWK +C+E++ ++ C DSEPFR+PVD +++PDY I+ PMD GT+RE L NY+SP+
Sbjct: 10 NWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPL 69
Query: 177 DFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 219
+F KD++ +F N++ Y NKRSKIY MT RLS EE +++++
Sbjct: 70 EFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKIS 112
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 76/103 (73%)
Query: 1532 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPI 1591
NWK +C+E++ ++ C DSEPFR+PVD +++PDY I+ PMD GT+RE L NY+SP+
Sbjct: 10 NWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPL 69
Query: 1592 DFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634
+F KD++ +F N++ Y NKRSKIY MT RLS EE +++++
Sbjct: 70 EFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKIS 112
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 70/98 (71%)
Query: 118 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPID 177
WK +C E+L ++ C DSEPFR+PVD L++PDY I+ PMD T+RE L NYESP++
Sbjct: 22 WKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPME 81
Query: 178 FVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 215
KDV+ +F NS+ Y +KRS+IY M+ RLS F EEH+
Sbjct: 82 LCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHI 119
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 70/98 (71%)
Query: 1533 WKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPID 1592
WK +C E+L ++ C DSEPFR+PVD L++PDY I+ PMD T+RE L NYESP++
Sbjct: 22 WKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPME 81
Query: 1593 FVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 1630
KDV+ +F NS+ Y +KRS+IY M+ RLS F EEH+
Sbjct: 82 LCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHI 119
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 90.9 bits (224), Expect = 6e-18, Method: Composition-based stats.
Identities = 85/321 (26%), Positives = 144/321 (44%), Gaps = 45/321 (14%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH S+V+ V F G+ I + +DD +KLW R+G+LL TL G S + +A +
Sbjct: 55 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
A+ + DKT+++WN + + L GH + GV F P +G +AS S D + W
Sbjct: 114 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP---DG-QTIASASDDKTVKLWNR 168
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
+ + + ++ + +FSP G +A+ S D V+++ +G
Sbjct: 169 NGQL-------------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---- 211
Query: 654 LGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 712
+L+ + HS V + +S S S D T +W + N L T
Sbjct: 212 -QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW------------NRNGQLLQTL 258
Query: 713 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 772
T V VA+ D I + + + +K+W+ NG L+Q L GH++ V+ +
Sbjct: 259 -----TGHSSSVNGVAF-RPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 311
Query: 773 HPFDSRVLLSAGHDGLIIIWD 793
P D + + SA D + +W+
Sbjct: 312 SP-DGQTIASASDDKTVKLWN 331
Score = 85.9 bits (211), Expect = 2e-16, Method: Composition-based stats.
Identities = 83/321 (25%), Positives = 143/321 (44%), Gaps = 45/321 (14%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH S+V+ V F G+ I + +DD +KLW R+G+ L TL G S + +A +
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTI 359
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
A+ + DKT+++WN + + L GH + GV F P +G +AS S D + W
Sbjct: 360 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP---DG-QTIASASDDKTVKLWNR 414
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
+ + + ++ + +FSP +A+ S D V+++ +G
Sbjct: 415 NGQL-------------LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---- 457
Query: 654 LGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 712
+L+ + HS V + +S S S D T +W + N L T
Sbjct: 458 -QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW------------NRNGQLLQTL 504
Query: 713 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 772
T V VA+ + D I + + + +K+W+ NG L+Q L GH++ V+ +
Sbjct: 505 -----TGHSSSVRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 557
Query: 773 HPFDSRVLLSAGHDGLIIIWD 793
P D + + SA D + +W+
Sbjct: 558 SP-DGQTIASASSDKTVKLWN 577
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 84/321 (26%), Positives = 142/321 (44%), Gaps = 45/321 (14%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
H S+V V F G+ I + +DD +KLW R+G+LL TL G S + +A +
Sbjct: 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTI 72
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
A+ + DKT+++WN + + L GH + GV F P +G +AS S D + W
Sbjct: 73 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP---DG-QTIASASDDKTVKLWNR 127
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
+ + + ++ + +FSP G +A+ S D V+++ +G
Sbjct: 128 NGQL-------------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---- 170
Query: 654 LGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 712
+L+ + HS V + +S S S D T +W + N L T
Sbjct: 171 -QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW------------NRNGQLLQTL 217
Query: 713 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 772
T V VA+ + D I + + + +K+W+ NG L+Q L GH++ V +
Sbjct: 218 -----TGHSSSVRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAF 270
Query: 773 HPFDSRVLLSAGHDGLIIIWD 793
P D + + SA D + +W+
Sbjct: 271 RP-DGQTIASASDDKTVKLWN 290
Score = 78.2 bits (191), Expect = 4e-14, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 26/225 (11%)
Query: 468 QHYVNL-GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI 526
QH L GH S+V+ V F G+ I + +DD +KLW R+G+LL TL G S + +A
Sbjct: 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 393
Query: 527 DNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586
+A+ + DKT+++WN + + L GH + GV F P + +AS S D
Sbjct: 394 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDD----QTIASASDDK 448
Query: 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYK 646
+ W + + + ++ + +FSP G +A+ S D V+++
Sbjct: 449 TVKLWNRNGQL-------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Query: 647 MDGVDSPLGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 690
+G +L+ + HS V + +S S S D T +W
Sbjct: 496 RNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 54.7 bits (130), Expect = 5e-07, Method: Composition-based stats.
Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 44/281 (15%)
Query: 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 573
L S + +A +A+ + DKT+++WN + + L GH + GV F P
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP--- 67
Query: 574 NGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL 633
+G +AS S D + W + + + ++ + +FSP G +
Sbjct: 68 DG-QTIASASDDKTVKLWNRNGQL-------------LQTLTGHSSSVRGVAFSPDGQTI 113
Query: 634 ATGSGDHHVRVYKMDGVDSPLGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
A+ S D V+++ +G +L+ + HS V + +S S S D T +W
Sbjct: 114 ASASDDKTVKLWNRNG-----QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-- 166
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
+ N L T T V VA+ + D I + + + +K+W+
Sbjct: 167 ----------NRNGQLLQTL-----TGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNR- 209
Query: 753 NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
NG L+Q L GH++ V + P D + + SA D + +W+
Sbjct: 210 NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN 249
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 26/190 (13%)
Query: 605 HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE-VEEHS 663
H V R+ ++ + +FSP G +A+ S D V+++ +G +L+ + HS
Sbjct: 3 HMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHS 57
Query: 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723
V + +S S S D T +W + N L T T
Sbjct: 58 SSVWGVAFSPDGQTIASASDDKTVKLW------------NRNGQLLQTL-----TGHSSS 100
Query: 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA 783
V VA+ + D I + + + +K+W+ NG L+Q L GH++ V+ + P D + + SA
Sbjct: 101 VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASA 157
Query: 784 GHDGLIIIWD 793
D + +W+
Sbjct: 158 SDDKTVKLWN 167
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 86.3 bits (212), Expect = 1e-16, Method: Composition-based stats.
Identities = 79/321 (24%), Positives = 138/321 (42%), Gaps = 35/321 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIWDV 139
Query: 594 KLDIDISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 652
K + + H +PV F+ G + + S D R++ D
Sbjct: 140 KTGMCLKTLPAHSDPVS-------------AVHFNRDGSLIVSSSYDGLCRIW--DTASG 184
Query: 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 712
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---K 231
Query: 713 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 772
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM-VYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 773 HPFDSRVLLSA-GHDGLIIIW 792
HP ++ + +A +D I +W
Sbjct: 291 HPTENIIASAALENDKTIKLW 311
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 65/287 (22%), Positives = 124/287 (43%), Gaps = 37/287 (12%)
Query: 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFC 569
L+ TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 570 PLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 78 ----SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQ 121
Query: 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 689
+ +GS D VR++ V + + + + HSD V ++ ++ VS S DG I
Sbjct: 122 SNLIVSGSFDESVRIWD---VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749
W Q CL K D+ N V+ V + + ++++ A + +K+W
Sbjct: 179 WDTASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLW 222
Query: 750 DAFNGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
D G ++ GH NE + + ++ + ++S D ++ IW++
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 90 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 132
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 185
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 85.5 bits (210), Expect = 2e-16, Method: Composition-based stats.
Identities = 80/320 (25%), Positives = 140/320 (43%), Gaps = 33/320 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 140
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + P +A F+ G + + S D R++ D
Sbjct: 141 --DVKTGKCLKTLPAHSD----PVSA----VHFNRDGSLIVSSSYDGLCRIW--DTASGQ 188
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 235
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 294
Query: 774 PFDSRVLLSA-GHDGLIIIW 792
P ++ + +A +D I +W
Sbjct: 295 PTENIIASAALENDKTIKLW 314
Score = 70.5 bits (171), Expect = 9e-12, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 80
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 81 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 127
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 128 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 185 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 228
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 92
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 93 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 135
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 188
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 85.5 bits (210), Expect = 2e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 79
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 80 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 133
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + + F+ G + + S D R++ D
Sbjct: 134 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 181
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 228
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 287
Query: 774 PFDSRVLLSA-GHDGLIIIW 792
P ++ + +A +D I +W
Sbjct: 288 PTENIIASAALENDKTIKLW 307
Score = 70.5 bits (171), Expect = 9e-12, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 73
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 74 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 120
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 121 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 178 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 221
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 222 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 30 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 85
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 86 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 128
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 181
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 85.5 bits (210), Expect = 2e-16, Method: Composition-based stats.
Identities = 80/320 (25%), Positives = 140/320 (43%), Gaps = 33/320 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 85
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 86 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 139
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + P +A F+ G + + S D R++ D
Sbjct: 140 --DVKTGKCLKTLPAHSD----PVSA----VHFNRDGSLIVSSSYDGLCRIW--DTASGQ 187
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 234
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 293
Query: 774 PFDSRVLLSA-GHDGLIIIW 792
P ++ + +A +D I +W
Sbjct: 294 PTENIIASAALENDKTIKLW 313
Score = 70.5 bits (171), Expect = 9e-12, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 79
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 80 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 126
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 127 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 184 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 227
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 228 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 36 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 91
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 92 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 134
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 187
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 85.5 bits (210), Expect = 3e-16, Method: Composition-based stats.
Identities = 81/321 (25%), Positives = 140/321 (43%), Gaps = 35/321 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 137
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + P +A F+ G + + S D R++ D
Sbjct: 138 --DVKTGKCLKTLPAHSD----PVSA----VHFNRDGSLIVSSSYDGLCRIW--DTASGQ 185
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 232
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 291
Query: 774 PFDSRVLLSAG--HDGLIIIW 792
P ++ ++ SA +D I +W
Sbjct: 292 PTEN-IIASAALENDKTIKLW 311
Score = 72.0 bits (175), Expect = 3e-12, Method: Composition-based stats.
Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LAA + DK I+IW + GH+ I+ V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 78 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 124
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 125 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 182 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 225
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA S D ++++ DG + H + + WS VS S D
Sbjct: 34 FSPNGEWLAASSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 90 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 132
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 185
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 140
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + + F+ G + + S D R++ D
Sbjct: 141 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 188
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 235
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 294
Query: 774 PFDSRVLLSA-GHDGLIIIW 792
P ++ + +A +D I +W
Sbjct: 295 PTENIIASAALENDKTIKLW 314
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 80
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 81 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 127
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 128 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 185 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 228
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 92
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 93 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 135
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 188
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 134
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + + F+ G + + S D R++ D
Sbjct: 135 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 182
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 229
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 288
Query: 774 PFDSRVLLSA-GHDGLIIIW 792
P ++ + +A +D I +W
Sbjct: 289 PTENIIASAALENDKTIKLW 308
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 74
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 75 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 121
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 122 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 179 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 222
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 86
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 87 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 129
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 182
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 76
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 77 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 130
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + + F+ G + + S D R++ D
Sbjct: 131 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 178
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 225
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 284
Query: 774 PFDSRVLLSA-GHDGLIIIW 792
P ++ + +A +D I +W
Sbjct: 285 PTENIIASAALENDKTIKLW 304
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 70
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 71 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 117
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 118 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 175 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 218
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 219 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 27 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 82
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 83 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 125
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 178
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 98 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 151
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + + F+ G + + S D R++ D
Sbjct: 152 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 199
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 246
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 305
Query: 774 PFDSRVLLSA-GHDGLIIIW 792
P ++ + +A +D I +W
Sbjct: 306 PTENIIASAALENDKTIKLW 325
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 91
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 92 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 138
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 139 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 196 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 239
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 240 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 48 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 103
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 104 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 146
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 199
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 81
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 82 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 135
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + + F+ G + + S D R++ D
Sbjct: 136 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 183
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 230
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 289
Query: 774 PFDSRVLLSA-GHDGLIIIW 792
P ++ + +A +D I +W
Sbjct: 290 PTENIIASAALENDKTIKLW 309
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 75
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 76 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 122
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 123 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 180 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 223
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 224 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 32 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 87
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 88 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 130
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 183
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 134
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + + F+ G + + S D R++ D
Sbjct: 135 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 182
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 229
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 288
Query: 774 PFDSRVLLSA-GHDGLIIIW 792
P ++ + +A +D I +W
Sbjct: 289 PTENIIASAALENDKTIKLW 308
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 74
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 75 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 121
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 122 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 179 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 222
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 86
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 87 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 129
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 182
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 85.1 bits (209), Expect = 4e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 140
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + + F+ G + + S D R++ D
Sbjct: 141 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 188
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 235
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 294
Query: 774 PFDSRVLLSA-GHDGLIIIW 792
P ++ + +A +D I +W
Sbjct: 295 PTENIIASAALENDKTIKLW 314
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 80
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 81 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 127
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 128 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 185 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 228
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 92
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 93 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 135
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 188
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 84.7 bits (208), Expect = 4e-16, Method: Composition-based stats.
Identities = 77/310 (24%), Positives = 135/310 (43%), Gaps = 32/310 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 137
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + P +A F+ G + + S D R++ D
Sbjct: 138 --DVKTGKCLKTLPAHSD----PVSA----VHFNRDGSLIVSSSYDGLCRIW--DTASGQ 185
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 232
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 291
Query: 774 PFDSRVLLSA 783
P ++ + +A
Sbjct: 292 PTENIIASAA 301
Score = 70.9 bits (172), Expect = 6e-12, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 78 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 124
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 125 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 182 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 225
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 90 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 132
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 185
Score = 30.4 bits (67), Expect = 9.0, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 474 GHLSAVFCVLFD---KLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRN 530
GH + +C+ + G+ IV+G++D L+ +W + +++ L+G + + A
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 531 ILLAAGTV--DKTIRIW 545
++A+ + DKTI+++
Sbjct: 295 NIIASAALENDKTIKLF 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 84.3 bits (207), Expect = 5e-16, Method: Composition-based stats.
Identities = 77/310 (24%), Positives = 135/310 (43%), Gaps = 32/310 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 137
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + P +A F+ G + + S D R++ D
Sbjct: 138 --DVKTGKCLKTLPAHSD----PVSA----VHFNRDGSLIVSSSYDGLCRIW--DTASGQ 185
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 232
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 291
Query: 774 PFDSRVLLSA 783
P ++ + +A
Sbjct: 292 PTENIIASAA 301
Score = 70.9 bits (172), Expect = 7e-12, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 78 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 124
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 125 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 182 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 225
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 50.8 bits (120), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 90 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 132
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 185
Score = 31.2 bits (69), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 474 GHLSAVFCVLFD---KLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRN 530
GH + +C+ + G+ IV+G++D L+ +W + +++ L+G + + A
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 531 ILLAAGTV--DKTIRIW 545
++A+ + DKTI+++
Sbjct: 295 NIIASAALENDKTIKLY 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 84.0 bits (206), Expect = 7e-16, Method: Composition-based stats.
Identities = 78/321 (24%), Positives = 137/321 (42%), Gaps = 35/321 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIWDV 139
Query: 594 KLDIDISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 652
K + + H +PV F+ G + + S D R++ D
Sbjct: 140 KTGMCLKTLPAHSDPVS-------------AVHFNRDGSLIVSSSYDGLCRIW--DTASG 184
Query: 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 712
+++ + V +++S + ++ + D +W Y + CL K
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGK----------CL---K 231
Query: 713 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 772
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM-VYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 773 HPFDSRVLLSA-GHDGLIIIW 792
HP ++ + +A +D I +W
Sbjct: 291 HPTENIIASAALENDKTIKLW 311
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 65/287 (22%), Positives = 124/287 (43%), Gaps = 37/287 (12%)
Query: 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFC 569
L+ TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 570 PLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 78 ----SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQ 121
Query: 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 689
+ +GS D VR++ V + + + + HSD V ++ ++ VS S DG I
Sbjct: 122 SNLIVSGSFDESVRIWD---VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749
W Q CL K D+ N V+ V + + ++++ A + +K+W
Sbjct: 179 WDTASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNDLKLW 222
Query: 750 DAFNGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
D G ++ GH NE + + ++ + ++S D ++ IW++
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 90 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 132
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 185
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 84.0 bits (206), Expect = 8e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 104
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 105 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 158
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + + F+ G + + S D R++ D
Sbjct: 159 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 206
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 253
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 312
Query: 774 PFDSRVLLSA-GHDGLIIIW 792
P ++ + +A +D I +W
Sbjct: 313 PTENIIASAALENDKTIKLW 332
Score = 68.9 bits (167), Expect = 3e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 98
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 99 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 145
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 146 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 203 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 246
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 247 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 55 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 110
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 111 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 153
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 206
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 84.0 bits (206), Expect = 8e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 103 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 156
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 653
D+ K + P + + F+ G + + S D R++ D
Sbjct: 157 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 204
Query: 654 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 251
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 310
Query: 774 PFDSRVLLSA-GHDGLIIIW 792
P ++ + +A +D I +W
Sbjct: 311 PTENIIASAALENDKTIKLW 330
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 96
Query: 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 97 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 143
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 144 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 201 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 244
Query: 753 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 794
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 245 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 626 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 53 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 108
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW + CL K S+ V ++ +++ +F+
Sbjct: 109 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 151
Query: 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 204
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 142/355 (40%), Gaps = 73/355 (20%)
Query: 468 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID 527
+ Y GH S V V+F + V+V+ ++D IK+W G TL+G + + DI+ D
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 159
Query: 528 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587
+ LLA+ + D TI++W+ Q I + GH ++ V+ P NG +++ S S D
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP---NG-DHIVSASRDKT 215
Query: 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647
I W+ + + H + +RP G +A+ S D VRV+
Sbjct: 216 IKMWEVQTGYCVKTFTGHRE--WVRMVRPNQ----------DGTLIASCSNDQTVRVWV- 262
Query: 648 DGVDSPLGILEVEEHSDKVDSIQW----SHSHLR----------------FVSGSRDGTA 687
V + E+ EH V+ I W S+S + +SGSRD T
Sbjct: 263 --VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320
Query: 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--- 744
+W + CL +T+V D R V+ F
Sbjct: 321 KMW----------DVSTGMCL---------------MTLVGHDNWVRGVLFHSGGKFILS 355
Query: 745 -----QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794
+++WD N ++ L H + V L+ H + +++ D + +W+
Sbjct: 356 CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 409
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 144/320 (45%), Gaps = 54/320 (16%)
Query: 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT 537
+ C+ F G IV+G+DD +K+W A GK L TL G +G + + R+ ++ +G+
Sbjct: 121 VITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM--RDNIIISGS 176
Query: 538 VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 597
D+T+++WN +T I L GH + ++ V S S D + W DI
Sbjct: 177 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV------VSGSRDATLRVW----DI 226
Query: 598 DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL 657
+ + + V+ A + C + G + +G+ D V+V+ + + +
Sbjct: 227 ETGQCLH---VLMGHV-----AAVRCVQYD--GRRVVSGAYDFMVKVWDPE---TETCLH 273
Query: 658 EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717
++ H+++V S+Q+ H+ VSGS D + +W + ++T H TS
Sbjct: 274 TLQGHTNRVYSLQFDGIHV--VSGSLDTSIRVWDVETGN------CIHTLTGHQSLTSGM 325
Query: 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG---HTNEVFVLESHP 774
K ++ + N + +KIWD G +Q L+G H + V L+
Sbjct: 326 ELKDN-------------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ--- 369
Query: 775 FDSRVLLSAGHDGLIIIWDI 794
F+ ++++ DG + +WD+
Sbjct: 370 FNKNFVITSSDDGTVKLWDL 389
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 29/222 (13%)
Query: 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNR 529
+V +GH++AV CV +D G +V+GA D ++K+W L TL+G + + + D
Sbjct: 233 HVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-- 288
Query: 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589
I + +G++D +IR+W+++T I L GHQ + +G+ N L S + D +
Sbjct: 289 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD------NILVSGNADSTVK 342
Query: 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAH---ILCSSFSPGGLFLATGSGDHHVRVYK 646
W DI + + + ++ N H + C F+ F+ T S D V+++
Sbjct: 343 IW----DIKTGQCL--------QTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWD 388
Query: 647 MDGVD--SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGT 686
+ + L LE V I+ S++ L GSR+GT
Sbjct: 389 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 142/348 (40%), Gaps = 63/348 (18%)
Query: 448 YSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD 507
Y+ L R + + HK +L H S V CV F GE + TG + +++R D
Sbjct: 45 YNPALPREIDVELHK---------SLDHTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSD 94
Query: 508 GKLLATLRGCSGE------------------ISDIAIDNRNILLAAGTVDKTIRIWNLQT 549
G L+A L S I + LA G D+ IRIW+++
Sbjct: 95 GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN 154
Query: 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM 609
+ +L GH+ I +++ P + L S S D + W + S T+ E +
Sbjct: 155 RKIVMILQGHEQDIYSLDYFP----SGDKLVSGSGDRTVRIWDLRTG-QCSLTLSIEDGV 209
Query: 610 FNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL------EVEE-- 661
+ PG+ G ++A GS D VRV+ DS G L E E
Sbjct: 210 TTVAVSPGD-----------GKYIAAGSLDRAVRVW-----DSETGFLVERLDSENESGT 253
Query: 662 -HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720
H D V S+ ++ VSGS D + +W + + + D T T E + +K
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN---NKSDSKTPNSGTCEVTYIGHK 310
Query: 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVF 768
V VA +D ++++ + + + WD +G+ + +L+GH N V
Sbjct: 311 DF-VLSVATTQNDEYILSG-SKDRGVLFWDKKSGNPLLMLQGHRNSVI 356
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 606 EPVMFNERIRPG-NAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD 664
+P N P + +I FSP G FLATG+ D +R++ +++ ++ ++ H
Sbjct: 110 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD---IENRKIVMILQGHEQ 166
Query: 665 KVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKV 724
+ S+ + S + VSGS D T IW + Q T D V
Sbjct: 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL-----------TLSIED------GV 209
Query: 725 TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL-------KGHTNEVFVLESHPFDS 777
T VA D I A + + +++WD+ G LV+ L GH + V+ + D
Sbjct: 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV-VFTRDG 268
Query: 778 RVLLSAGHDGLIIIWDILSSKQR 800
+ ++S D + +W++ ++ +
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNK 291
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD------------GKLLATLRGCSGEI 521
GH +V+ V+F + G+ +V+G+ D +KLW ++ G T G +
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 522 SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNG--FNYL 579
+A + + +G+ D+ + W+ ++ P+ +L GH+ + V G +N
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
Query: 580 ASTSTDGCIGFWKYK 594
A+ S D WKYK
Sbjct: 374 ATGSGDCKARIWKYK 388
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 101/246 (41%), Gaps = 46/246 (18%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID-NRNIL 532
GH ++ + + G+ +V+G+ D +++W R G+ TL G ++ +A+
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKY 221
Query: 533 LAAGTVDKTIRIWNLQTLAPISVL-------VGHQGIITGVNFCPLEVNGFNYLASTSTD 585
+AAG++D+ +R+W+ +T + L GH+ + V F + S S D
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF----TRDGQSVVSGSLD 277
Query: 586 GCIGFWKYKLDIDISKT------------VFHEPVMFNERIRPGNAHILCSSFSPGGLFL 633
+ W + + S + + H+ + + + +IL S G LF
Sbjct: 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
Query: 634 ATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS------HLRFVSGSRDGTA 687
SG+ PL L ++ H + V S+ ++ + F +GS D A
Sbjct: 338 DKKSGN-------------PL--LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 382
Query: 688 LIWYYK 693
IW YK
Sbjct: 383 RIWKYK 388
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 532
+GH V V + E I++G+ D + W + G L L+G + +A+ N + L
Sbjct: 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366
Query: 533 ------LAAGTVDKTIRIWNLQTLAP 552
A G+ D RIW + +AP
Sbjct: 367 GPEYNVFATGSGDCKARIWKYKKIAP 392
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 108 NQKKLKRPFNWKNECREVLETLWVC-PDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIR 164
++KK+ +P + LE L+ P+S PFR+PVD L PDY IV +PMDL TI+
Sbjct: 7 SKKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIK 66
Query: 165 EELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 215
+L Y+ P +V D+ +F+N+ YN+ K S++Y ++LSE E+ +
Sbjct: 67 RKLDTGQYQEPWQYVDDIWLMFNNAWLYNR-KTSRVYKYCSKLSEVFEQEI 116
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 1523 NQKKLKRPFNWKNECREVLETLWVC-PDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIR 1579
++KK+ +P + LE L+ P+S PFR+PVD L PDY IV +PMDL TI+
Sbjct: 7 SKKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIK 66
Query: 1580 EELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 1630
+L Y+ P +V D+ +F+N+ YN+ K S++Y ++LSE E+ +
Sbjct: 67 RKLDTGQYQEPWQYVDDIWLMFNNAWLYNR-KTSRVYKYCSKLSEVFEQEI 116
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 125/274 (45%), Gaps = 25/274 (9%)
Query: 474 GHLSAVF-CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 532
GH+++V C+ F+ ++TGADD +I+++ + + K L L G G + + + IL
Sbjct: 119 GHMTSVITCLQFED--NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
+ +G+ D+T+R+W+++ V GH + ++ +E Y+ + S D + WK
Sbjct: 177 V-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI--VEYKNIKYIVTGSRDNTLHVWK 233
Query: 593 YKLDIDISK--------TVFHEPV---MFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 641
+ + VFH P F +R A + + S G + +GS D+
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNT 291
Query: 642 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701
+ V+ + + + + H+D++ S + H R +S S D T IW + + +
Sbjct: 292 LIVWDVAQMKC---LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY-T 347
Query: 702 LDMNTCLPHTKETSDE--TNKKIKVTMVAWDASD 733
L +T L SD+ + ++ WDA+D
Sbjct: 348 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381
Score = 37.7 bits (86), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 449 SGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG 508
SG +L++ + ++ Y+ GH ++ ++D + ++ + D I++W +G
Sbjct: 285 SGSYDNTLIV--WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342
Query: 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546
+L+ TL+G + + + + ++ L + D +IR W+
Sbjct: 343 ELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWD 378
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 138/328 (42%), Gaps = 57/328 (17%)
Query: 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT 537
V+C+ +D + IV+G D IK+W + L G +G + + D R I+ G+
Sbjct: 135 GVYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII--TGS 190
Query: 538 VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 597
D T+R+W++ T ++ L+ H + + F NG + + S D I W
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF----NNGM--MVTCSKDRSIAVWDMASPT 244
Query: 598 DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL 657
DI+ V+ R A + F ++ + SGD ++V+ + +
Sbjct: 245 DITL----RRVLVGHR-----AAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEF---VR 290
Query: 658 EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717
+ H + +Q+ + VSGS D T +W +C CL E +E
Sbjct: 291 TLNGHKRGIACLQYRDRLV--VSGSSDNTIRLWDIEC----------GACL-RVLEGHEE 337
Query: 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWD--------AFNGDL-VQVLKGHTNEVF 768
+ I+ D I + ++ +IK+WD A G L ++ L H+ VF
Sbjct: 338 LVRCIRF--------DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 389
Query: 769 VLESHPFDSRVLLSAGHDGLIIIWDILS 796
L+ FD ++S+ HD I+IWD L+
Sbjct: 390 RLQ---FDEFQIVSSSHDDTILIWDFLN 414
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 38/223 (17%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH +V C+ +D+ VI+TG+ D +++W G++L TL + + +N ++
Sbjct: 171 GHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MM 226
Query: 534 AAGTVDKTIRIWNLQTLAPIS---VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590
+ D++I +W++ + I+ VLVGH+ + V+F Y+ S S D I
Sbjct: 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF------DDKYIVSASGDRTIKV 280
Query: 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAH---ILCSSFSPGGLFLATGSGDHHVRVYKM 647
W E +R N H I C + + +GS D+ +R++ +
Sbjct: 281 WNTST---------------CEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDI 323
Query: 648 DGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 690
+ + L +L E H + V I++ + R VSG+ DG +W
Sbjct: 324 E-CGACLRVL--EGHEELVRCIRFDNK--RIVSGAYDGKIKVW 361
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 108/268 (40%), Gaps = 50/268 (18%)
Query: 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
+ +G D TI+IW+ TL +L GH G + + + + + S+D + W
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY------DERVIITGSSDSTVRVWD 199
Query: 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 652
++ + H + + R G + T S D + V+ M S
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRFNNG--------------MMVTCSKDRSIAVWDM---AS 242
Query: 653 PLGIL---EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709
P I + H V+ + + ++ VS S D T +W S F+R
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDFDDKYI--VSASGDRTIKVW--NTSTCEFVR-------- 290
Query: 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
T K + DR V++ + N I++WD G ++VL+GH V
Sbjct: 291 --------TLNGHKRGIACLQYRDRLVVSGSSDN-TIRLWDIECGACLRVLEGHEELVRC 341
Query: 770 LESHPFDSRVLLSAGHDGLIIIWDILSS 797
+ FD++ ++S +DG I +WD++++
Sbjct: 342 IR---FDNKRIVSGAYDGKIKVWDLVAA 366
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 10/128 (7%)
Query: 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRN 530
V +GH +AV V FD + IV+ + D IK+W + + TL G I+ + R+
Sbjct: 251 VLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRD 306
Query: 531 ILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590
L+ +G+ D TIR+W+++ A + VL GH+ ++ + F + S + DG I
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF------DNKRIVSGAYDGKIKV 360
Query: 591 WKYKLDID 598
W +D
Sbjct: 361 WDLVAALD 368
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 109 QKKLKRPFNWKNECREVLETLWVC-PDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIRE 165
+KK+ +P + LE L+ P+S PFR+PVD L PDY IV PMDL TI+
Sbjct: 5 RKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKR 64
Query: 166 ELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 215
+L Y+ P +V DV +F+N+ YN+ K S++Y ++L+E E+ +
Sbjct: 65 KLDTGQYQEPWQYVDDVWLMFNNAWLYNR-KTSRVYKFCSKLAEVFEQEI 113
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 1524 QKKLKRPFNWKNECREVLETLWVC-PDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIRE 1580
+KK+ +P + LE L+ P+S PFR+PVD L PDY IV PMDL TI+
Sbjct: 5 RKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKR 64
Query: 1581 ELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 1630
+L Y+ P +V DV +F+N+ YN+ K S++Y ++L+E E+ +
Sbjct: 65 KLDTGQYQEPWQYVDDVWLMFNNAWLYNR-KTSRVYKFCSKLAEVFEQEI 113
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 109 QKKLKRPFNWKNECREVLETLWVC-PDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIRE 165
+KK+ +P + LE L+ P+S PFR+PVD L PDY IV PMDL TI+
Sbjct: 3 RKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKR 62
Query: 166 ELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 215
+L Y+ P +V DV +F+N+ YN+ K S++Y ++L+E E+ +
Sbjct: 63 KLDTGQYQEPWQYVDDVWLMFNNAWLYNR-KTSRVYKFCSKLAEVFEQEI 111
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 1524 QKKLKRPFNWKNECREVLETLWVC-PDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIRE 1580
+KK+ +P + LE L+ P+S PFR+PVD L PDY IV PMDL TI+
Sbjct: 3 RKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKR 62
Query: 1581 ELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHL 1630
+L Y+ P +V DV +F+N+ YN+ K S++Y ++L+E E+ +
Sbjct: 63 KLDTGQYQEPWQYVDDVWLMFNNAWLYNR-KTSRVYKFCSKLAEVFEQEI 111
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 122/274 (44%), Gaps = 25/274 (9%)
Query: 474 GHLSAVF-CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 532
GH ++V C+ F+ ++TGADD I+++ + + K L L G G + + + IL
Sbjct: 119 GHXTSVITCLQFED--NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
+ +G+ D+T+R+W+++ V GH + ++ +E Y+ + S D + WK
Sbjct: 177 V-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI--VEYKNIKYIVTGSRDNTLHVWK 233
Query: 593 YKLDIDISK--------TVFHEPV---MFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 641
+ + VFH P F +R A + + S G + +GS D+
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV--RTVSGHGNIVVSGSYDNT 291
Query: 642 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701
+ V+ V + + H+D++ S + H R +S S D T IW + + +
Sbjct: 292 LIVWD---VAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXY-T 347
Query: 702 LDMNTCLPHTKETSDE--TNKKIKVTMVAWDASD 733
L +T L SD+ + ++ WDA+D
Sbjct: 348 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNR 529
Y+ GH ++ ++D + ++ + D I++W +G+L TL+G + + + + ++
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK 363
Query: 530 NILLAAGTVDKTIRIWN 546
L + D +IR W+
Sbjct: 364 --FLVSAAADGSIRGWD 378
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 104/240 (43%), Gaps = 24/240 (10%)
Query: 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615
L GH+G +T + CP + STS D + W D S+ + P + R+
Sbjct: 9 LTGHRGWVTSL-ACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLP---DRRLE 64
Query: 616 PGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH 675
+A + + S G F + S DH +R++ + L H+ V S+ +S +
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLG---HTKDVLSVAFSPDN 121
Query: 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS-DR 734
+ VSG RD +W K C+ HT T+ V+ V + S D
Sbjct: 122 RQIVSGGRDNALRVWNVK-----------GECM-HTLSRGAHTDW---VSCVRFSPSLDA 166
Query: 735 WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794
VI + ++ +K+WD G LV LKGHTN V + P D + S+ DG+ +WD+
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDL 225
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 96/234 (41%), Gaps = 27/234 (11%)
Query: 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISD 523
N + Y LGH V V F IV+G D +++W + G+ + TL RG +
Sbjct: 98 NGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVS 156
Query: 524 IAIDNRNI---LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA 580
+ ++ ++ +G D +++W+L T ++ L GH +T V P +G + A
Sbjct: 157 CVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP---DG-SLCA 212
Query: 581 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH 640
S+ DG W +S+ P+ N+ N + +C++ G
Sbjct: 213 SSDKDGVARLWDLTKGEALSEMAAGAPI--NQICFSPNRYWMCAATEKG----------- 259
Query: 641 HVRVYKMDGVDSPLGILEVEEHSDKV----DSIQWSHSHLRFVSGSRDGTALIW 690
+R++ ++ D + + + S K+ SI WS SG D +W
Sbjct: 260 -IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 20/179 (11%)
Query: 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 573
L G S +SD+A+ N + + D ++R+WNLQ +GH + V F P
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN- 121
Query: 574 NGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GL 631
+ S D + W K + M + C FSP
Sbjct: 122 ---RQIVSGGRDNALRVWNVKGE-----------CMHTLSRGAHTDWVSCVRFSPSLDAP 167
Query: 632 FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 690
+ +G D+ V+V+ + + + +++ H++ V S+ S S +DG A +W
Sbjct: 168 VIVSGGWDNLVKVWDL---ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 36/185 (19%)
Query: 659 VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718
+E HS V + S++ VS S D + +W + Q ++ L HTK+
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQY------KFLGHTKD----- 111
Query: 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK--GHTNEVFVLESHP-F 775
V VA+ +R +++ N +++W+ G+ + L HT+ V + P
Sbjct: 112 -----VLSVAFSPDNRQIVSGGRDN-ALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSL 164
Query: 776 DSRVLLSAGHDGLIIIWDI----LSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831
D+ V++S G D L+ +WD+ L + +G+ + V SPDG+ CA
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTV-----------SPDGSLCAS 213
Query: 832 TDSYG 836
+D G
Sbjct: 214 SDKDG 218
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI--DNRNI 531
GH + V V G V+ + D ++LW ++G+ G + ++ +A DNR I
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 532 LLAAGTVDKTIRIWNLQTLAPISVLVG-HQGIITGVNFCP 570
+ +G D +R+WN++ ++ G H ++ V F P
Sbjct: 125 V--SGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSP 162
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 125 VLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 184
V + + PDS PF PV+K PDY K+++ PMDL TIR+ + Y+S F+ DV
Sbjct: 38 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 97
Query: 185 VFHNSRNYN-------QNKRSKIYIMTTRLSEFAEEHLRRL 218
+ NS YN + + + + L+E+ +EHL +L
Sbjct: 98 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY-DEHLTQL 137
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 1540 VLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 1599
V + + PDS PF PV+K PDY K+++ PMDL TIR+ + Y+S F+ DV
Sbjct: 38 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 97
Query: 1600 VFHNSRNYN-------QNKRSKIYIMTTRLSEFAEEHLRRL 1633
+ NS YN + + + + L+E+ +EHL +L
Sbjct: 98 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY-DEHLTQL 137
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 1376 EKIITGLEEVMGLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRITSAQ 1435
+ I+T +++M + + PF PV+ DL T+R Y+ S
Sbjct: 35 DNIVT--QKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFL 92
Query: 1436 FDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
DV + AN+ K+N P S K A+ I ++ + + E
Sbjct: 93 DDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTE 129
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 123 REVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVK 180
R VL+TLW + PF++PVD KL+ PDY KI+ PMD+GTI++ L + Y + + ++
Sbjct: 31 RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQ 90
Query: 181 DVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 218
D +F N YN+ I +M L + + + L
Sbjct: 91 DFNTMFTNCYIYNK-PGDDIVLMAEALEKLFLQKINEL 127
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 1538 REVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVK 1595
R VL+TLW + PF++PVD KL+ PDY KI+ PMD+GTI++ L + Y + + ++
Sbjct: 31 RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQ 90
Query: 1596 DVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633
D +F N YN+ I +M L + + + L
Sbjct: 91 DFNTMFTNCYIYNK-PGDDIVLMAEALEKLFLQKINEL 127
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 105 EAMNQKKLKRPFN-WKNECREVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLG 161
E N K KR N + R VL+TLW + PF++PVD KL+ PDY KI+ PMD+G
Sbjct: 28 ETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMG 87
Query: 162 TIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
TI++ L + Y + + ++D +F N YN+
Sbjct: 88 TIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK 120
Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 1520 EAMNQKKLKRPFN-WKNECREVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLG 1576
E N K KR N + R VL+TLW + PF++PVD KL+ PDY KI+ PMD+G
Sbjct: 28 ETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMG 87
Query: 1577 TIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
TI++ L + Y + + ++D +F N YN+
Sbjct: 88 TIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK 120
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 123 REVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVK 180
R VL+TLW + PF++PVD KL+ PDY KI+ PMD+GTI++ L + Y + + ++
Sbjct: 27 RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQ 86
Query: 181 DVKRVFHNSRNYNQ 194
D +F N YN+
Sbjct: 87 DFNTMFTNCYIYNK 100
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 1538 REVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVK 1595
R VL+TLW + PF++PVD KL+ PDY KI+ PMD+GTI++ L + Y + + ++
Sbjct: 27 RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQ 86
Query: 1596 DVKRVFHNSRNYNQ 1609
D +F N YN+
Sbjct: 87 DFNTMFTNCYIYNK 100
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 123 REVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVK 180
R VL+TLW + PF++PVD KL+ PDY KI+ PMD+GTI++ L + Y + + ++
Sbjct: 27 RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQ 86
Query: 181 DVKRVFHNSRNYNQ 194
D +F N YN+
Sbjct: 87 DFNTMFTNCYIYNK 100
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 1538 REVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVK 1595
R VL+TLW + PF++PVD KL+ PDY KI+ PMD+GTI++ L + Y + + ++
Sbjct: 27 RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQ 86
Query: 1596 DVKRVFHNSRNYNQ 1609
D +F N YN+
Sbjct: 87 DFNTMFTNCYIYNK 100
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 125 VLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 184
V + + PDS PF PV+K PDY K+++ PMDL TIR+ + Y+S F+ DV
Sbjct: 178 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 237
Query: 185 VFHNSRNYN-------QNKRSKIYIMTTRLSEFAEEHLRRL 218
+ NS YN + + + + L+E+ +EHL +L
Sbjct: 238 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY-DEHLTQL 277
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 1540 VLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 1599
V + + PDS PF PV+K PDY K+++ PMDL TIR+ + Y+S F+ DV
Sbjct: 178 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 237
Query: 1600 VFHNSRNYN-------QNKRSKIYIMTTRLSEFAEEHLRRL 1633
+ NS YN + + + + L+E+ +EHL +L
Sbjct: 238 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY-DEHLTQL 277
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 133 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192
P++ PF PV+ DY KI+ PMDL T+RE +R Y S +F + ++ + NS Y
Sbjct: 63 PNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122
Query: 193 NQNKRSKIYIMTTRLSEFAEEHLR 216
N K S I + L + +E L+
Sbjct: 123 NGPKHSLTQISQSML-DLCDEKLK 145
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 1548 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607
P++ PF PV+ DY KI+ PMDL T+RE +R Y S +F + ++ + NS Y
Sbjct: 63 PNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122
Query: 1608 NQNKRSKIYIMTTRLSEFAEEHLR 1631
N K S I + L + +E L+
Sbjct: 123 NGPKHSLTQISQSML-DLCDEKLK 145
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 1383 EEVMGLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRITSAQFDVRYLA 1442
+++M + + PF PV+ DL T+R Y+ S DV +
Sbjct: 180 QKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLIL 239
Query: 1443 ANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
AN+ K+N P S K A+ I ++ + + E
Sbjct: 240 ANSVKYNGPESQYTKTAQEIVNVCYQTLTE 269
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 125 VLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 184
V + + PDS PF PV+K PDY K+++ PMDL TIR+ + Y+S F+ DV
Sbjct: 145 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 204
Query: 185 VFHNSRNYN-------QNKRSKIYIMTTRLSEFAEEHLRRL 218
+ NS YN + + + + L+E+ +EHL +L
Sbjct: 205 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY-DEHLTQL 244
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 1540 VLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 1599
V + + PDS PF PV+K PDY K+++ PMDL TIR+ + Y+S F+ DV
Sbjct: 145 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 204
Query: 1600 VFHNSRNYN-------QNKRSKIYIMTTRLSEFAEEHLRRL 1633
+ NS YN + + + + L+E+ +EHL +L
Sbjct: 205 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY-DEHLTQL 244
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 133 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192
P++ PF PV+ DY KI+ PMDL T+RE +R Y S +F + ++ + NS Y
Sbjct: 30 PNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 89
Query: 193 NQNKRSKIYIMTTRLSEFAEEHLR 216
N K S I + L + +E L+
Sbjct: 90 NGPKHSLTQISQSML-DLCDEKLK 112
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 1548 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607
P++ PF PV+ DY KI+ PMDL T+RE +R Y S +F + ++ + NS Y
Sbjct: 30 PNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 89
Query: 1608 NQNKRSKIYIMTTRLSEFAEEHLR 1631
N K S I + L + +E L+
Sbjct: 90 NGPKHSLTQISQSML-DLCDEKLK 112
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 1383 EEVMGLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRITSAQFDVRYLA 1442
+++M + + PF PV+ DL T+R Y+ S DV +
Sbjct: 147 QKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLIL 206
Query: 1443 ANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
AN+ K+N P S K A+ I ++ + + E
Sbjct: 207 ANSVKYNGPESQYTKTAQEIVNVCYQTLTE 236
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 125 VLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 184
V + + PDS PF PV+K PDY K+++ PMDL TIR+ + Y+S F+ DV
Sbjct: 157 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 216
Query: 185 VFHNSRNYN-------QNKRSKIYIMTTRLSEFAEEHLRRL 218
+ NS YN + + + + L+E+ +EHL +L
Sbjct: 217 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY-DEHLTQL 256
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 1540 VLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 1599
V + + PDS PF PV+K PDY K+++ PMDL TIR+ + Y+S F+ DV
Sbjct: 157 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 216
Query: 1600 VFHNSRNYN-------QNKRSKIYIMTTRLSEFAEEHLRRL 1633
+ NS YN + + + + L+E+ +EHL +L
Sbjct: 217 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY-DEHLTQL 256
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 133 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192
P++ PF PV+ DY KI+ PMDL T+RE +R Y S +F + ++ + NS Y
Sbjct: 42 PNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 101
Query: 193 NQNKRSKIYIMTTRLSEFAEEHLR 216
N K S I + L + +E L+
Sbjct: 102 NGPKHSLTQISQSML-DLCDEKLK 124
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 1548 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607
P++ PF PV+ DY KI+ PMDL T+RE +R Y S +F + ++ + NS Y
Sbjct: 42 PNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 101
Query: 1608 NQNKRSKIYIMTTRLSEFAEEHLR 1631
N K S I + L + +E L+
Sbjct: 102 NGPKHSLTQISQSML-DLCDEKLK 124
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 1383 EEVMGLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRITSAQFDVRYLA 1442
+++M + + PF PV+ DL T+R Y+ S DV +
Sbjct: 159 QKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLIL 218
Query: 1443 ANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
AN+ K+N P S K A+ I ++ + + E
Sbjct: 219 ANSVKYNGPESQYTKTAQEIVNVCYQTLTE 248
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 125 VLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
V++ LW + PFR+PVD KL PDY KI+ PMD+GTI+ L + Y + + ++D
Sbjct: 40 VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDF 99
Query: 183 KRVFHNSRNYNQNKRSKIYIMTTRLSEF---------AEEHLRRLTVRWNSHK 226
+F N YN+ I +M L + EE +T+ NSHK
Sbjct: 100 NTMFTNCYIYNK-PTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPKNSHK 151
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 1540 VLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
V++ LW + PFR+PVD KL PDY KI+ PMD+GTI+ L + Y + + ++D
Sbjct: 40 VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDF 99
Query: 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSEF---------AEEHLRRLTVRWNSHK 1641
+F N YN+ I +M L + EE +T+ NSHK
Sbjct: 100 NTMFTNCYIYNK-PTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPKNSHK 151
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 125 VLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 184
V + + PDS PF PV+K PDY K+++ P+DL TIR+ + Y+S F+ DV
Sbjct: 35 VTQKMMAVPDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNL 94
Query: 185 VFHNSRNYN-------QNKRSKIYIMTTRLSEFAEEHLRRL 218
+ NS YN + + + I ++E+ +EHL +L
Sbjct: 95 ILANSVKYNGPESQYTKTAQEIVNICYQTITEY-DEHLTQL 134
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 1540 VLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 1599
V + + PDS PF PV+K PDY K+++ P+DL TIR+ + Y+S F+ DV
Sbjct: 35 VTQKMMAVPDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNL 94
Query: 1600 VFHNSRNYN-------QNKRSKIYIMTTRLSEFAEEHLRRL 1633
+ NS YN + + + I ++E+ +EHL +L
Sbjct: 95 ILANSVKYNGPESQYTKTAQEIVNICYQTITEY-DEHLTQL 134
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 1383 EEVMGLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRITSAQFDVRYLA 1442
+++M + + PF PV+ DL T+R Y+ S DV +
Sbjct: 37 QKMMAVPDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLIL 96
Query: 1443 ANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
AN+ K+N P S K A+ I ++ + I E
Sbjct: 97 ANSVKYNGPESQYTKTAQEIVNICYQTITE 126
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 123 REVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVK 180
+ V++ LW + PFR+PVD KL PDY KI+ PMD+GTI+ L + Y + + ++
Sbjct: 38 KVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQ 97
Query: 181 DVKRVFHNSRNYNQNKRSKIYIMTT-------RLSEFAEEHLRRLTVRWNSHK 226
D +F N YN+ + + T +++ +E + NSHK
Sbjct: 98 DFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPNSHK 150
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 1538 REVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVK 1595
+ V++ LW + PFR+PVD KL PDY KI+ PMD+GTI+ L + Y + + ++
Sbjct: 38 KVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQ 97
Query: 1596 DVKRVFHNSRNYNQNKRSKIYIMTT-------RLSEFAEEHLRRLTVRWNSHK 1641
D +F N YN+ + + T +++ +E + NSHK
Sbjct: 98 DFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPNSHK 150
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 123 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
+ VL +L + PF +PVD D PDY ++ PMDL T+ E ++ YE +FV D+
Sbjct: 78 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 183 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 216
++F N R YN + S Y L F + L+
Sbjct: 138 TKIFDNCRYYNPSD-SPFYQCAEVLESFFVQKLK 170
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 1538 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
+ VL +L + PF +PVD D PDY ++ PMDL T+ E ++ YE +FV D+
Sbjct: 78 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 1631
++F N R YN + S Y L F + L+
Sbjct: 138 TKIFDNCRYYNPSD-SPFYQCAEVLESFFVQKLK 170
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 1376 EKIITGLEEVM----GLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRI 1431
EK GL+ V+ +A PFL PVD + DL T+ R Q R+Y ++
Sbjct: 71 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKL 130
Query: 1432 TSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIK 1471
T D+ + N +N S + A ++ ++ +K
Sbjct: 131 TEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 170
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 123 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
+ VL +L + PF +PVD D PDY ++ PMDL T+ E ++ YE +FV D+
Sbjct: 78 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 183 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 216
++F N R YN + S Y L F + L+
Sbjct: 138 TKIFDNCRYYNPSD-SPFYQCAEVLESFFVQKLK 170
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 1538 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
+ VL +L + PF +PVD D PDY ++ PMDL T+ E ++ YE +FV D+
Sbjct: 78 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 1631
++F N R YN + S Y L F + L+
Sbjct: 138 TKIFDNCRYYNPSD-SPFYQCAEVLESFFVQKLK 170
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 1376 EKIITGLEEVM----GLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRI 1431
EK GL+ V+ +A PFL PVD + DL T+ R Q R+Y ++
Sbjct: 71 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKL 130
Query: 1432 TSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIK 1471
T D+ + N +N S + A ++ ++ +K
Sbjct: 131 TEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 170
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 123 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
+ VL +L + PF +PVD D PDY ++ PMDL T+ E ++ YE +FV D+
Sbjct: 19 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 183 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 216
++F N R YN + S Y L F + L+
Sbjct: 79 TKIFDNCRYYNPSD-SPFYQCAEVLESFFVQKLK 111
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 1538 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
+ VL +L + PF +PVD D PDY ++ PMDL T+ E ++ YE +FV D+
Sbjct: 19 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 1631
++F N R YN + S Y L F + L+
Sbjct: 79 TKIFDNCRYYNPSD-SPFYQCAEVLESFFVQKLK 111
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 1376 EKIITGLEEVM----GLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRI 1431
EK GL+ V+ +A PFL PVD + DL T+ R Q R+Y ++
Sbjct: 12 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKL 71
Query: 1432 TSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIK 1471
T D+ + N +N S + A ++ ++ +K
Sbjct: 72 TEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 111
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 123 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
+ VL +L + PF +PVD D PDY ++ PMDL T+ E ++ YE +FV D+
Sbjct: 26 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 85
Query: 183 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 216
++F N R YN + S Y L F + L+
Sbjct: 86 TKIFDNCRYYNPSD-SPFYQCAEVLESFFVQKLK 118
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 1538 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
+ VL +L + PF +PVD D PDY ++ PMDL T+ E ++ YE +FV D+
Sbjct: 26 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 85
Query: 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 1631
++F N R YN + S Y L F + L+
Sbjct: 86 TKIFDNCRYYNPSD-SPFYQCAEVLESFFVQKLK 118
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 1376 EKIITGLEEVM----GLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRI 1431
EK GL+ V+ +A PFL PVD + DL T+ R Q R+Y ++
Sbjct: 19 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKL 78
Query: 1432 TSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIK 1471
T D+ + N +N S + A ++ ++ +K
Sbjct: 79 TEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 118
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 124 EVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVK 183
+VL+ + DS PF +PVD+ P+Y +I+ APMD+ ++ ++L G Y + +FV D+K
Sbjct: 23 KVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMK 82
Query: 184 RVFHNSRNYN 193
+F N R YN
Sbjct: 83 TMFRNCRKYN 92
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 1539 EVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVK 1598
+VL+ + DS PF +PVD+ P+Y +I+ APMD+ ++ ++L G Y + +FV D+K
Sbjct: 23 KVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMK 82
Query: 1599 RVFHNSRNYN 1608
+F N R YN
Sbjct: 83 TMFRNCRKYN 92
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 57.0 bits (136), Expect = 9e-08, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 105 EAMNQKKLKRPFNWKNEC-REVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLG 161
E +N KK R N R VL+ LW S PF++PVD KL PDY I+ PMDL
Sbjct: 1 EYINTKKSGRLTNQLQFLQRVVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLN 60
Query: 162 TIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 218
TI++ L YE + ++D +F N YN+ I +M L + + L ++
Sbjct: 61 TIKKRLENKYYEKASECIEDFNTMFSNCYLYNKTG-DDIVVMAQALEKLFMQKLSQM 116
Score = 57.0 bits (136), Expect = 9e-08, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 1520 EAMNQKKLKRPFNWKNEC-REVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLG 1576
E +N KK R N R VL+ LW S PF++PVD KL PDY I+ PMDL
Sbjct: 1 EYINTKKSGRLTNQLQFLQRVVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLN 60
Query: 1577 TIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633
TI++ L YE + ++D +F N YN+ I +M L + + L ++
Sbjct: 61 TIKKRLENKYYEKASECIEDFNTMFSNCYLYNKTG-DDIVVMAQALEKLFMQKLSQM 116
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 98 AVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAP 157
+ R ++ + ++++K FN E RE +C + F K D+PDY KI++ P
Sbjct: 15 SAKRKSKKNIRKQRMKILFNVVLEAREPGSGRRLC---DLFMVKPSKKDYPDYYKIILEP 71
Query: 158 MDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIY 201
MDL I +R D Y ++D+K +F N+R+YN+ + S++Y
Sbjct: 72 MDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNE-EGSQVY 114
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 1513 AVTRAQREAMNQKKLKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAP 1572
+ R ++ + ++++K FN E RE +C + F K D+PDY KI++ P
Sbjct: 15 SAKRKSKKNIRKQRMKILFNVVLEAREPGSGRRLC---DLFMVKPSKKDYPDYYKIILEP 71
Query: 1573 MDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIY 1616
MDL I +R D Y ++D+K +F N+R+YN+ + S++Y
Sbjct: 72 MDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNE-EGSQVY 114
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 125 VLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
V++TLW + PF +PVD KL+ PDY KI+ PMD+GTI++ L + Y S + ++D
Sbjct: 27 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 86
Query: 183 KRVFHNSRNYNQ 194
+F N YN+
Sbjct: 87 NTMFTNCYIYNK 98
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 1540 VLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
V++TLW + PF +PVD KL+ PDY KI+ PMD+GTI++ L + Y S + ++D
Sbjct: 27 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 86
Query: 1598 KRVFHNSRNYNQ 1609
+F N YN+
Sbjct: 87 NTMFTNCYIYNK 98
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 123 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
+ VL +L + PF +PVD D PDY ++ PMDL T+ E ++ YE +FV D+
Sbjct: 19 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 183 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 216
+F N R YN + S Y L F + L+
Sbjct: 79 TAIFDNCRYYNPSD-SPFYQCAEVLESFFVQKLK 111
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 1538 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
+ VL +L + PF +PVD D PDY ++ PMDL T+ E ++ YE +FV D+
Sbjct: 19 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 1631
+F N R YN + S Y L F + L+
Sbjct: 79 TAIFDNCRYYNPSD-SPFYQCAEVLESFFVQKLK 111
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 1376 EKIITGLEEVM----GLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRI 1431
EK GL+ V+ +A PFL PVD + DL T+ R Q R+Y ++
Sbjct: 12 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKL 71
Query: 1432 TSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIK 1471
T D+ + N +N S + A ++ ++ +K
Sbjct: 72 TEFVADMTAIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 111
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 125 VLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
V++TLW + PF +PVD KL+ PDY KI+ PMD+GTI++ L + Y S + ++D
Sbjct: 25 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 84
Query: 183 KRVFHNSRNYNQ 194
+F N YN+
Sbjct: 85 NTMFTNCYIYNK 96
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 1540 VLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
V++TLW + PF +PVD KL+ PDY KI+ PMD+GTI++ L + Y S + ++D
Sbjct: 25 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 84
Query: 1598 KRVFHNSRNYNQ 1609
+F N YN+
Sbjct: 85 NTMFTNCYIYNK 96
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 125 VLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
V++TLW + PF +PVD KL+ PDY KI+ PMD+GTI++ L + Y S + ++D
Sbjct: 29 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 88
Query: 183 KRVFHNSRNYNQ 194
+F N YN+
Sbjct: 89 NTMFTNCYIYNK 100
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 1540 VLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
V++TLW + PF +PVD KL+ PDY KI+ PMD+GTI++ L + Y S + ++D
Sbjct: 29 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 88
Query: 1598 KRVFHNSRNYNQ 1609
+F N YN+
Sbjct: 89 NTMFTNCYIYNK 100
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 119 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGD--NYESPI 176
K +C +L L+ S F+ PV L PDY KI+ PMDL TI++ L+ D Y P
Sbjct: 22 KRKCERLLLFLYCHEMSLAFQDPV-PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE 80
Query: 177 DFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 218
DFV D + +F N +N+ S++ +L + EE L+ L
Sbjct: 81 DFVADFRLIFQNCAEFNE-PDSEVANAGIKLENYFEELLKNL 121
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 1534 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGD--NYESPI 1591
K +C +L L+ S F+ PV L PDY KI+ PMDL TI++ L+ D Y P
Sbjct: 22 KRKCERLLLFLYCHEMSLAFQDPV-PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE 80
Query: 1592 DFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633
DFV D + +F N +N+ S++ +L + EE L+ L
Sbjct: 81 DFVADFRLIFQNCAEFNE-PDSEVANAGIKLENYFEELLKNL 121
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 137 PFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196
PF +PV+K + PDY + PMDL T+ +L + Y+ DF+ D + VF+N R YN +
Sbjct: 33 PFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYN-GE 91
Query: 197 RSKIYIMTTRLSEFAEEHLRRL 218
+ Y RL +F ++ +
Sbjct: 92 NTSYYKYANRLEKFFNNKVKEI 113
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1552 PFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611
PF +PV+K + PDY + PMDL T+ +L + Y+ DF+ D + VF+N R YN +
Sbjct: 33 PFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYN-GE 91
Query: 1612 RSKIYIMTTRLSEFAEEHLRRL 1633
+ Y RL +F ++ +
Sbjct: 92 NTSYYKYANRLEKFFNNKVKEI 113
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 1368 QGDRDATCEKIITGLEEVMGLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRF 1427
+G DA + I+T E+ + A PFL PV+ + DL+T+ + ++
Sbjct: 11 RGPHDAAIQNILT---ELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNK 67
Query: 1428 YRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
Y+++ +D R + N +N +++ KYA + +KE
Sbjct: 68 YQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKE 112
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 119 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGD--NYESPI 176
K +C +L L+ S F+ PV L PDY KI+ PMDL TI++ L+ D Y P
Sbjct: 83 KRKCERLLLFLYCHEMSLAFQDPV-PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE 141
Query: 177 DFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 218
DFV D + +F N +N+ S++ +L + EE L+ L
Sbjct: 142 DFVADFRLIFQNCAEFNE-PDSEVANAGIKLENYFEELLKNL 182
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 1534 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGD--NYESPI 1591
K +C +L L+ S F+ PV L PDY KI+ PMDL TI++ L+ D Y P
Sbjct: 83 KRKCERLLLFLYCHEMSLAFQDPV-PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE 141
Query: 1592 DFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633
DFV D + +F N +N+ S++ +L + EE L+ L
Sbjct: 142 DFVADFRLIFQNCAEFNE-PDSEVANAGIKLENYFEELLKNL 182
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 524
N R +GH AV + F G+ +++ ++D +I++W + G + L+ + D
Sbjct: 999 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDF 1057
Query: 525 AI--DNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAST 582
+ D+R L + + D T+++WN+ T HQG + C + + + +ST
Sbjct: 1058 RLLQDSR---LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS---CAISSDATKF-SST 1110
Query: 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHV 642
S D W + L + HE ++ N + CS+FS G+ LATG + +
Sbjct: 1111 SADKTAKIWSFDL-----LSPLHE-------LKGHNGCVRCSAFSLDGILLATGDDNGEI 1158
Query: 643 RVYKM-DG 649
R++ + DG
Sbjct: 1159 RIWNVSDG 1166
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 614 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673
+RP + + FS G +A+ D ++V+K + + +L+++ H D+V +S
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK---LLDIKAHEDEVLCCAFSS 674
Query: 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733
+ S D IW ++ T DE ++++ + S+
Sbjct: 675 DDSYIATCSADKKVKIW--------------DSATGKLVHTYDEHSEQVNCCHFT-NKSN 719
Query: 734 RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
++ + +F +K+WD + + GHTN V P D +L S DG + +WD
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWD 778
Query: 794 ILSSKQR 800
+ S+ +R
Sbjct: 779 VRSANER 785
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 131/329 (39%), Gaps = 42/329 (12%)
Query: 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA 534
H AV+ F + G+ I + D +++++A G+ L ++ E+ A + + +A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 535 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNY--LASTSTDGCIGFWK 592
+ DK ++IW+ T + H + +F N N+ LA+ S D + W
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF----TNKSNHLLLATGSNDFFLKLWD 736
Query: 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 652
+ T+F N FSP LA+ S D +R++ + +
Sbjct: 737 LN-QKECRNTMFGHTNSVNH-----------CRFSPDDELLASCSADGTLRLWDVRSANE 784
Query: 653 PLGI------LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706
I L E+ + V+ I ++ S S DG +I ++ + + D+
Sbjct: 785 RKSINVKRFFLSSEDPPEDVEVI------VKCCSWSADGDKII---VAAKNKVLLFDI-- 833
Query: 707 CLPHTKETSDETNKKIKVTMVAWDAS--DRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 764
HT E + T+ D S D + A++ + +++W+ + V +GH
Sbjct: 834 ---HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDSRLKVADCRGHL 889
Query: 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
+ V + P D L+A D I +W+
Sbjct: 890 SWVHGVMFSP-DGSSFLTASDDQTIRVWE 917
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCS---------GEISDI 524
GH V C F G ++ TG D+ I++W DG+LL + S G ++D+
Sbjct: 1132 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1191
Query: 525 AI--DNRNILLAAGTVDKTIRIWNLQT 549
D++ ++ A G ++ WN+ T
Sbjct: 1192 CFSPDSKTLVSAGG----YLKWWNVAT 1214
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 76/387 (19%), Positives = 138/387 (35%), Gaps = 83/387 (21%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR--------------------------- 506
GHLS V V+F G +T +DD I++W +
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 946
Query: 507 --DGKLLATLRGCSGEI--------SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556
+ + L + G +G+I S + +A G D I+I L S
Sbjct: 947 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 1006
Query: 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV-------- 608
VGH+ + + F +G L S+S D I W ++ + E V
Sbjct: 1007 VGHKKAVRHIQF---TADG-KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD 1062
Query: 609 ------MFNERIRPGN--------------AHILCSSFSPGGLFLATGSGDHHVRVYKMD 648
F+ ++ N +L + S ++ S D +++ D
Sbjct: 1063 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1122
Query: 649 GVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708
+ SPL E++ H+ V +S + +G +G IW Q +++C
Sbjct: 1123 LL-SPLH--ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL------LHSCA 1173
Query: 709 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVF 768
P + E T+ VT V + + +++A + +K W+ GD Q + +
Sbjct: 1174 PISVEEGTATHGGW-VTDVCFSPDSKTLVSAGGY---LKWWNVATGDSSQTFYTNGTNLK 1229
Query: 769 VLESHPFDSRVLLSAGHDGLIIIWDIL 795
+ P D R ++ + G++ I +L
Sbjct: 1230 KIHVSP-DFRTYVTVDNLGILYILQVL 1255
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 524
N R +GH AV + F G+ +++ ++D +I++W + G + L+ + D
Sbjct: 992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDF 1050
Query: 525 AI--DNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAST 582
+ D+R L + + D T+++WN+ T HQG + C + + + +ST
Sbjct: 1051 RLLQDSR---LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS---CAISSDATKF-SST 1103
Query: 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHV 642
S D W + L + HE ++ N + CS+FS G+ LATG + +
Sbjct: 1104 SADKTAKIWSFDL-----LSPLHE-------LKGHNGCVRCSAFSLDGILLATGDDNGEI 1151
Query: 643 RVYKM-DG 649
R++ + DG
Sbjct: 1152 RIWNVSDG 1159
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 614 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673
+RP + + FS G +A+ D ++V+K + + +L+++ H D+V +S
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK---LLDIKAHEDEVLCCAFSS 667
Query: 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733
+ S D IW ++ T DE ++++ + S+
Sbjct: 668 DDSYIATCSADKKVKIW--------------DSATGKLVHTYDEHSEQVNCCHFT-NKSN 712
Query: 734 RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
++ + +F +K+WD + + GHTN V P D +L S DG + +WD
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWD 771
Query: 794 ILSSKQR 800
+ S+ +R
Sbjct: 772 VRSANER 778
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 131/329 (39%), Gaps = 42/329 (12%)
Query: 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA 534
H AV+ F + G+ I + D +++++A G+ L ++ E+ A + + +A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 535 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNY--LASTSTDGCIGFWK 592
+ DK ++IW+ T + H + +F N N+ LA+ S D + W
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF----TNKSNHLLLATGSNDFFLKLWD 729
Query: 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 652
+ T+F N FSP LA+ S D +R++ + +
Sbjct: 730 LN-QKECRNTMFGHTNSVNH-----------CRFSPDDELLASCSADGTLRLWDVRSANE 777
Query: 653 PLGI------LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706
I L E+ + V+ I ++ S S DG +I ++ + + D+
Sbjct: 778 RKSINVKRFFLSSEDPPEDVEVI------VKCCSWSADGDKII---VAAKNKVLLFDI-- 826
Query: 707 CLPHTKETSDETNKKIKVTMVAWDAS--DRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 764
HT E + T+ D S D + A++ + +++W+ + V +GH
Sbjct: 827 ---HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDSRLKVADCRGHL 882
Query: 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
+ V + P D L+A D I +W+
Sbjct: 883 SWVHGVMFSP-DGSSFLTASDDQTIRVWE 910
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCS---------GEISDI 524
GH V C F G ++ TG D+ I++W DG+LL + S G ++D+
Sbjct: 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184
Query: 525 AI--DNRNILLAAGTVDKTIRIWNLQT 549
D++ ++ A G ++ WN+ T
Sbjct: 1185 CFSPDSKTLVSAGG----YLKWWNVAT 1207
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 76/387 (19%), Positives = 138/387 (35%), Gaps = 83/387 (21%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR--------------------------- 506
GHLS V V+F G +T +DD I++W +
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939
Query: 507 --DGKLLATLRGCSGEI--------SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556
+ + L + G +G+I S + +A G D I+I L S
Sbjct: 940 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 999
Query: 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV-------- 608
VGH+ + + F +G L S+S D I W ++ + E V
Sbjct: 1000 VGHKKAVRHIQF---TADG-KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD 1055
Query: 609 ------MFNERIRPGN--------------AHILCSSFSPGGLFLATGSGDHHVRVYKMD 648
F+ ++ N +L + S ++ S D +++ D
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115
Query: 649 GVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708
+ SPL E++ H+ V +S + +G +G IW Q +++C
Sbjct: 1116 LL-SPLH--ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL------LHSCA 1166
Query: 709 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVF 768
P + E T+ VT V + + +++A + +K W+ GD Q + +
Sbjct: 1167 PISVEEGTATHGGW-VTDVCFSPDSKTLVSAGGY---LKWWNVATGDSSQTFYTNGTNLK 1222
Query: 769 VLESHPFDSRVLLSAGHDGLIIIWDIL 795
+ P D R ++ + G++ I +L
Sbjct: 1223 KIHVSP-DFRTYVTVDNLGILYILQVL 1248
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 54.3 bits (129), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI------ 526
+GH S V V DK +I++G+ D IK+W + G+ LATL G + +S + +
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 527 DNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586
D+ ++ + + DK ++ WNL + +GH I + P +G +AS DG
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP---DG-TLIASAGKDG 218
Query: 587 CIGFW 591
I W
Sbjct: 219 EIMLW 223
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615
L GH G +T + N L S S D + WK D F PV R
Sbjct: 13 LEGHNGWVTSL---ATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV----RSF 61
Query: 616 PGNAHILCS-SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674
G++HI+ + + G + + S D +R++ + ++ + H V S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG---HKSDVMSVDIDKK 118
Query: 675 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 734
+SGSRD T +W K Q L N + + +E VT+++ A +
Sbjct: 119 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGND 175
Query: 735 WVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
++ A N N FQI+ D + GH + + L + P D ++ SAG DG I++W+
Sbjct: 176 KMVKAWNLNQFQIE------ADFI----GHNSNINTLTASP-DGTLIASAGKDGEIMLWN 224
Query: 794 ILSSK 798
+ + K
Sbjct: 225 LAAKK 229
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547
G ++ + D ++LW G+ G ++ + ID + ++ +G+ DKTI++W +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA--STSTDGCIGFW---KYKLDIDISKT 602
+ ++ L+GH ++ V P E + + S D + W +++++ D
Sbjct: 137 KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--- 192
Query: 603 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647
+ H N++I + SP G +A+ D + ++ +
Sbjct: 193 IGH------------NSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 54.3 bits (129), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI------ 526
+GH S V V DK +I++G+ D IK+W + G+ LATL G + +S + +
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 527 DNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586
D+ ++ + + DK ++ WNL + +GH I + P +G +AS DG
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP---DG-TLIASAGKDG 218
Query: 587 CIGFW 591
I W
Sbjct: 219 EIMLW 223
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615
L GH G +T + N L S S D + WK D F PV R
Sbjct: 13 LEGHNGWVTSL---ATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV----RSF 61
Query: 616 PGNAHILCS-SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674
G++HI+ + + G + + S D +R++ + ++ + H V S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG---HKSDVMSVDIDKK 118
Query: 675 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 734
+SGSRD T +W K Q L N + + +E VT+++ A +
Sbjct: 119 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGND 175
Query: 735 WVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
++ A N N FQI+ D + GH + + L + P D ++ SAG DG I++W+
Sbjct: 176 KMVKAWNLNQFQIE------ADFI----GHNSNINTLTASP-DGTLIASAGKDGEIMLWN 224
Query: 794 ILSSK 798
+ + K
Sbjct: 225 LAAKK 229
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547
G ++ + D ++LW G+ G ++ + ID + ++ +G+ DKTI++W +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA--STSTDGCIGFW---KYKLDIDISKT 602
+ ++ L+GH ++ V P E + + S D + W +++++ D
Sbjct: 137 KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--- 192
Query: 603 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647
+ H N++I + SP G +A+ D + ++ +
Sbjct: 193 IGH------------NSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 54.3 bits (129), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI------ 526
+GH S V V DK +I++G+ D IK+W + G+ LATL G + +S + +
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 527 DNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586
D+ ++ + + DK ++ WNL + +GH I + P +G +AS DG
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP---DG-TLIASAGKDG 212
Query: 587 CIGFW 591
I W
Sbjct: 213 EIMLW 217
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615
L GH G +T + N L S S D + WK D F PV R
Sbjct: 7 LEGHNGWVTSL---ATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV----RSF 55
Query: 616 PGNAHILCS-SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674
G++HI+ + + G + + S D +R++ + ++ + H V S+
Sbjct: 56 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG---HKSDVMSVDIDKK 112
Query: 675 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 734
+SGSRD T +W K Q L N + + +E VT+++ A +
Sbjct: 113 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGND 169
Query: 735 WVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
++ A N N FQI+ D + GH + + L + P D ++ SAG DG I++W+
Sbjct: 170 KMVKAWNLNQFQIE------ADFI----GHNSNINTLTASP-DGTLIASAGKDGEIMLWN 218
Query: 794 ILSSK 798
+ + K
Sbjct: 219 LAAKK 223
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547
G ++ + D ++LW G+ G ++ + ID + ++ +G+ DKTI++W +
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 130
Query: 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA--STSTDGCIGFW---KYKLDIDISKT 602
+ ++ L+GH ++ V P E + + S D + W +++++ D
Sbjct: 131 KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--- 186
Query: 603 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647
+ H N++I + SP G +A+ D + ++ +
Sbjct: 187 IGH------------NSNINTLTASPDGTLIASAGKDGEIMLWNL 219
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 54.3 bits (129), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI------ 526
+GH S V V DK +I++G+ D IK+W + G+ LATL G + +S + +
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 527 DNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586
D+ ++ + + DK ++ WNL + +GH I + P +G +AS DG
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP---DG-TLIASAGKDG 218
Query: 587 CIGFW 591
I W
Sbjct: 219 EIMLW 223
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615
L GH G +T + N L S S D + WK D F PV R
Sbjct: 13 LEGHNGWVTSL---ATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV----RSF 61
Query: 616 PGNAHILCS-SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674
G++HI+ + + G + + S D +R++ + ++ + H V S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG---HKSDVMSVDIDKK 118
Query: 675 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 734
+SGSRD T +W K Q L N + + +E VT+++ A +
Sbjct: 119 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGND 175
Query: 735 WVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
++ A N N FQI+ D + GH + + L + P D ++ SAG DG I++W+
Sbjct: 176 KMVKAWNLNQFQIE------ADFI----GHNSNINTLTASP-DGTLIASAGKDGEIMLWN 224
Query: 794 ILSSK 798
+ + K
Sbjct: 225 LAAKK 229
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547
G ++ + D ++LW G+ G ++ + ID + ++ +G+ DKTI++W +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA--STSTDGCIGFW---KYKLDIDISKT 602
+ ++ L+GH ++ V P E + + S D + W +++++ D
Sbjct: 137 KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--- 192
Query: 603 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647
+ H N++I + SP G +A+ D + ++ +
Sbjct: 193 IGH------------NSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 54.3 bits (129), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI------ 526
+GH S V V DK +I++G+ D IK+W + G+ LATL G + +S + +
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 527 DNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586
D+ ++ + + DK ++ WNL + +GH I + P +G +AS DG
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP---DG-TLIASAGKDG 218
Query: 587 CIGFW 591
I W
Sbjct: 219 EIMLW 223
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615
L GH G +T + N L S S D + WK D F PV R
Sbjct: 13 LEGHNGWVTSL---ATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV----RSF 61
Query: 616 PGNAHILCS-SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674
G++HI+ + + G + + S D +R++ + ++ + H V S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG---HKSDVMSVDIDKK 118
Query: 675 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 734
+SGSRD T +W K Q L N + + +E VT+++ A +
Sbjct: 119 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGND 175
Query: 735 WVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
++ A N N FQI+ D + GH + + L + P D ++ SAG DG I++W+
Sbjct: 176 KMVKAWNLNQFQIE------ADFI----GHNSNINTLTASP-DGTLIASAGKDGEIMLWN 224
Query: 794 ILSSK 798
+ + K
Sbjct: 225 LAAKK 229
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547
G ++ + D ++LW G+ G ++ + ID + ++ +G+ DKTI++W +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA--STSTDGCIGFW---KYKLDIDISKT 602
+ ++ L+GH ++ V P E + + S D + W +++++ D
Sbjct: 137 KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--- 192
Query: 603 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647
+ H N++I + SP G +A+ D + ++ +
Sbjct: 193 IGH------------NSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 133 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192
P + PF +PV K + PDY +++ P+DL T+ E LR Y + FV D++RV N R Y
Sbjct: 19 PSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 78
Query: 193 N 193
N
Sbjct: 79 N 79
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 1548 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607
P + PF +PV K + PDY +++ P+DL T+ E LR Y + FV D++RV N R Y
Sbjct: 19 PSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 78
Query: 1608 N 1608
N
Sbjct: 79 N 79
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 1382 LEEVMGLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFY--RRITSAQFDVR 1439
L ++ A PF+ PV S+ DL T+ R ++R+Y R++ A D++
Sbjct: 12 LAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVA--DLQ 69
Query: 1440 YLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
+ AN ++N P S + A + +KE
Sbjct: 70 RVIANCREYNPPDSEYCRCASALEKFFYFKLKE 102
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 53.9 bits (128), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 106 AMNQKKLKRPFNWKNECREV-LETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGT 162
+MN KK R N ++V L+ LW S PF++PVD KL PDY I+ PMDL T
Sbjct: 1 SMNTKKNGRLTNQLQYLQKVVLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNT 60
Query: 163 IREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
I++ L Y + ++D +F N YN+
Sbjct: 61 IKKRLENKYYAKASECIEDFNTMFSNCYLYNK 92
Score = 53.9 bits (128), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 1521 AMNQKKLKRPFNWKNECREV-LETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGT 1577
+MN KK R N ++V L+ LW S PF++PVD KL PDY I+ PMDL T
Sbjct: 1 SMNTKKNGRLTNQLQYLQKVVLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNT 60
Query: 1578 IREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
I++ L Y + ++D +F N YN+
Sbjct: 61 IKKRLENKYYAKASECIEDFNTMFSNCYLYNK 92
Score = 35.4 bits (80), Expect = 0.31, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 1382 LEEVMGLSVAEPFLVPVDIS--QXXXXXXXXXXXXDLTTLRARFQNRFYRRITSAQFDVR 1439
L+++ S + PF PVD Q DL T++ R +N++Y + + D
Sbjct: 22 LKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDFN 81
Query: 1440 YLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 1472
+ +N +N+P +IV A+ + L ++ + +
Sbjct: 82 TMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQ 114
Score = 31.2 bits (69), Expect = 6.0, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKE 57
L T++ R +N++Y + + D + +N +N+P +IV A+ + L ++ + +
Sbjct: 58 LNTIKKRLENKYYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQ 114
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 99/248 (39%), Gaps = 40/248 (16%)
Query: 559 HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618
H ++T + ++ + + S S D I WK D + +R G+
Sbjct: 381 HTDMVTAI---ATPIDNADIIVSASRDKSIILWKLTKD--------DKAYGVAQRRLTGH 429
Query: 619 AHILCSS-FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR 677
+H + S G F +GS D +R++ + + + H+ V S+ +S + +
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLA---AGVSTRRFVGHTKDVLSVAFSLDNRQ 486
Query: 678 FVSGSRDGTALIW------YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA 731
VS SRD T +W Y S+ D +C+ + T T + +WD
Sbjct: 487 IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT-----IVSASWDK 541
Query: 732 SDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIII 791
+ +K+W+ N L L GHT V + P D + S G DG++++
Sbjct: 542 T-------------VKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLL 587
Query: 792 WDILSSKQ 799
WD+ K+
Sbjct: 588 WDLAEGKK 595
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 55/247 (22%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 532
+GH V V F IV+ + D IKLW TL C IS+ +R+ +
Sbjct: 469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN--------TLGECKYTISEGGEGHRDWV 520
Query: 533 -------------LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYL 579
+ + + DKT+++WNL S L GH G ++ V P +G +
Sbjct: 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP---DG-SLC 576
Query: 580 ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD 639
AS DG + W D+ K ++ + N I H LC FSP +L + +
Sbjct: 577 ASGGKDGVVLLW----DLAEGKKLYS--LEANSVI-----HALC--FSPNRYWLCAAT-E 622
Query: 640 HHVRVYKMDGVDSPLGI-LEVEEHSDKVD---------------SIQWSHSHLRFVSGSR 683
H ++++ ++ + ++++ ++K D S+ WS SG
Sbjct: 623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682
Query: 684 DGTALIW 690
DG +W
Sbjct: 683 DGVIRVW 689
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 118/323 (36%), Gaps = 44/323 (13%)
Query: 489 EVIVTGADDLLIKLWR-ARDGKLLAT----LRGCSGEISDIAIDNRNILLAAGTVDKTIR 543
++IV+ + D I LW+ +D K L G S + D+ + + +G+ D +R
Sbjct: 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455
Query: 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603
+W+L VGH + V F + S S D I W T+
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDN----RQIVSASRDRTIKLW---------NTL 502
Query: 604 FHEPVMFNERIRPGNAHILCSSFSPGGL--FLATGSGDHHVRVYKMDGVD--SPLGILEV 659
+E + C FSP L + + S D V+V+ + S L
Sbjct: 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA---- 558
Query: 660 EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL------PHTKE 713
H+ V ++ S SG +DG L+W + + L+ N+ + P+
Sbjct: 559 -GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK-KLYSLEANSVIHALCFSPNRYW 616
Query: 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 773
T IK+ WD + ++ + + + + A N + +V S
Sbjct: 617 LCAATEHGIKI----WDLESKSIVEDLKVDLKAEAEKADNSGPAATKR----KVIYCTSL 668
Query: 774 PF--DSRVLLSAGHDGLIIIWDI 794
+ D L S DG+I +W I
Sbjct: 669 NWSADGSTLFSGYTDGVIRVWGI 691
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 15/167 (8%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA--IDNRNI 531
GH V V+ G+ ++G+ D ++LW G G + ++ +A +DNR I
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 532 LLAAGTVDKTIRIWNLQTLAPISVLV-----GHQGIITGVNFCPLEVNGFNYLASTSTDG 586
+ A + D+TI++WN TL + GH+ ++ V F P + + S S D
Sbjct: 488 VSA--SRDRTIKLWN--TLGECKYTISEGGEGHRDWVSCVRFSPNTLQ--PTIVSASWDK 541
Query: 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL 633
+ W S H + + P + LC+S G+ L
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS--LCASGGKDGVVL 586
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 34/244 (13%)
Query: 632 FLATGSGDHHVRVYKMDGVDSPLGILE--VEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 689
+ + S D + ++K+ D G+ + + HS V+ + S +SGS DG +
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 690 W--YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747
W S RF+ HTK+ V VA+ +R +++A + + IK
Sbjct: 457 WDLAAGVSTRRFV--------GHTKD----------VLSVAFSLDNRQIVSA-SRDRTIK 497
Query: 748 IWDAFNG---DLVQVLKGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSSKQRGYK 803
+W+ + + +GH + V + P + ++SA D + +W++ + K R
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL 557
Query: 804 WFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYR 863
H G + SPDG+ CA G +L++ L K+ ++ H
Sbjct: 558 AGHT-------GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCF 610
Query: 864 TLNR 867
+ NR
Sbjct: 611 SPNR 614
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 464 SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD 523
SN + GH V V G + +G D ++ LW +GK L +L S +
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHAL 608
Query: 524 IAIDNRNILLAAGTVDKTIRIWNLQT 549
NR L AA + I+IW+L++
Sbjct: 609 CFSPNRYWLCAA--TEHGIKIWDLES 632
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI------ 526
+GH S V V DK I++G+ D IK+W + G+ LATL G + +S + +
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 527 DNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586
D+ ++ + + DK ++ WNL + +GH I + P +G +AS DG
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP---DG-TLIASAGKDG 218
Query: 587 CIGFW 591
I W
Sbjct: 219 EIXLW 223
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 62/245 (25%), Positives = 101/245 (41%), Gaps = 30/245 (12%)
Query: 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615
L GH G +T + N L S S D + WK D F PV R
Sbjct: 13 LEGHNGWVTSL---ATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV----RSF 61
Query: 616 PGNAHILCS-SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674
G++HI+ + + G + + S D +R++ + ++ + H V S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG---HKSDVXSVDIDKK 118
Query: 675 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 734
+SGSRD T +W K Q L N + + +E VT+++ A +
Sbjct: 119 ASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGND 175
Query: 735 WVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
+ A N N FQI+ D + GH + + L + P D ++ SAG DG I +W+
Sbjct: 176 KXVKAWNLNQFQIE------ADFI----GHNSNINTLTASP-DGTLIASAGKDGEIXLWN 224
Query: 794 ILSSK 798
+ + K
Sbjct: 225 LAAKK 229
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 21/165 (12%)
Query: 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547
G ++ + D ++LW G+ G ++ + ID + + +G+ DKTI++W +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI 136
Query: 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA--STSTDGCIGFW---KYKLDIDISKT 602
+ ++ L+GH ++ V P E + + S D + W +++++ D
Sbjct: 137 KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADF--- 192
Query: 603 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647
+ H N++I + SP G +A+ D + ++ +
Sbjct: 193 IGH------------NSNINTLTASPDGTLIASAGKDGEIXLWNL 225
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 123 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
+ VL +L + PF +PVD D PDY ++ P DL T E ++ YE +FV D
Sbjct: 78 KRVLRSLQAHKXAWPFLEPVDPNDAPDYYGVIKEPXDLATXEERVQRRYYEKLTEFVADX 137
Query: 183 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 216
++F N R YN + S Y L F + L+
Sbjct: 138 TKIFDNCRYYNPSD-SPFYQCAEVLESFFVQKLK 170
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 1538 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
+ VL +L + PF +PVD D PDY ++ P DL T E ++ YE +FV D
Sbjct: 78 KRVLRSLQAHKXAWPFLEPVDPNDAPDYYGVIKEPXDLATXEERVQRRYYEKLTEFVADX 137
Query: 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLR 1631
++F N R YN + S Y L F + L+
Sbjct: 138 TKIFDNCRYYNPSD-SPFYQCAEVLESFFVQKLK 170
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 1376 EKIITGLEEVM----GLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRI 1431
EK GL+ V+ A PFL PVD + DL T R Q R+Y ++
Sbjct: 71 EKDYEGLKRVLRSLQAHKXAWPFLEPVDPNDAPDYYGVIKEPXDLATXEERVQRRYYEKL 130
Query: 1432 TSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIK 1471
T D + N +N S + A ++ ++ +K
Sbjct: 131 TEFVADXTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 170
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 133 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192
P + PF +PV K + PDY +++ P+DL T+ E LR Y + FV D++RV N R Y
Sbjct: 23 PSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82
Query: 193 N 193
N
Sbjct: 83 N 83
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 1548 PDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607
P + PF +PV K + PDY +++ P+DL T+ E LR Y + FV D++RV N R Y
Sbjct: 23 PSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82
Query: 1608 N 1608
N
Sbjct: 83 N 83
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 1382 LEEVMGLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFY--RRITSAQFDVR 1439
L ++ A PF+ PV S+ DL T+ R ++R+Y R++ A D++
Sbjct: 16 LAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVA--DLQ 73
Query: 1440 YLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVD 1477
+ AN ++N P S + A + +KE +D
Sbjct: 74 RVIANCREYNPPDSEYCRCASALEKFFYFKLKEGGLID 111
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 18/173 (10%)
Query: 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA 534
H V+ + F + +++ +DD I++W + K + LRG + D + +N L
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRL-LKNSRLL 1065
Query: 535 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594
+ + D T+++WN+ T V HQG + C + + + +STS D W +
Sbjct: 1066 SWSFDGTVKVWNIITGNKEKDFVCHQGTVLS---CDISHDATKF-SSTSADKTAKIWSFD 1121
Query: 595 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647
L + + HE +R N + CS+FS LATG + +R++ +
Sbjct: 1122 LLLPL-----HE-------LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 25/220 (11%)
Query: 614 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673
+RP + + FS G +A+ D ++V+K + + +LE++ H D+V +S
Sbjct: 617 VRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEK---LLEIKAHEDEVLCCAFST 673
Query: 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733
+ S D IW N+ T DE ++++ ++S
Sbjct: 674 DDRFIATCSVDKKVKIW--------------NSMTGELVHTYDEHSEQVNCCHFT-NSSH 718
Query: 734 RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
++ + + +K+WD + + GHTN V P D ++L S DG + +WD
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWD 777
Query: 794 ILSSKQRGY----KWFHNIVEGQGEGALF--DGKWSPDGT 827
S+ +R ++F N+ + Q + + WS DG
Sbjct: 778 ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGA 817
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA 534
H AV+ F + G+ I + D +++++A G+ L ++ E+ A + +A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 535 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC-IGFWKY 593
+VDK ++IWN T + H VN C + + L +T + C + W
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHS---EQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY 645
+ T+F N FSP LA+ S D ++++
Sbjct: 737 N-QKECRNTMFGHTNSVNH-----------CRFSPDDKLLASCSADGTLKLW 776
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 76/353 (21%), Positives = 137/353 (38%), Gaps = 69/353 (19%)
Query: 529 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588
+N L + +WN + + ++ GH + GV F P +G ++L S S D I
Sbjct: 857 QNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSP---DGSSFLTS-SDDQTI 912
Query: 589 GFWKYKLDIDISKTVFHEPV--MFNE------------RIRPGN-----------AHILC 623
W+ K S + + V +F E R++ N A + C
Sbjct: 913 RLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSC 972
Query: 624 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR 683
SP ++A G + + + ++ V++ + +H V IQ++ +S S
Sbjct: 973 CCLSPHLQYIAFGDENGAIEILEL--VNNRI-FQSRFQHKKTVWHIQFTADEKTLISSSD 1029
Query: 684 DGTALIWYYKCSQWRFIRLDMNTC-----LPHTKETSDETNKKIKV-------------- 724
D +W ++ + F+R T L +++ S + +KV
Sbjct: 1030 DAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVC 1089
Query: 725 ---TMVAWDAS-DRWVITAINFNFQIKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRV 779
T+++ D S D ++ + + KIW +F+ L + L+GH N + DS +
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIW-SFDLLLPLHELRGH-NGCVRCSAFSVDSTL 1147
Query: 780 LLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW------SPDG 826
L + +G I IW++ + + H EGA G W SPDG
Sbjct: 1148 LATGDDNGEIRIWNVSNGEL-----LHLCAPLSEEGAATHGGWVTDLCFSPDG 1195
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 140/373 (37%), Gaps = 92/373 (24%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG------------------------- 508
GHLS V V+F G +T +DD I+LW +
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA 945
Query: 509 ----KLLATLRGCSGEI--------SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556
+ L + G +G+I S + +A G + I I L
Sbjct: 946 VDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSR 1005
Query: 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF---HEPVMFNER 613
H+ + + F E L S+S D I W ++LD K +F H+ + + R
Sbjct: 1006 FQHKKTVWHIQFTADE----KTLISSSDDAEIQVWNWQLD----KCIFLRGHQETVKDFR 1057
Query: 614 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673
+ N+ +L SF D V+V+ + + + H V S SH
Sbjct: 1058 LLK-NSRLLSWSF------------DGTVKVWNIITGNKEKDFVC---HQGTVLSCDISH 1101
Query: 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733
+F S S D TA IW + + L ++ H N ++ + + D++
Sbjct: 1102 DATKFSSTSADKTAKIWSFD------LLLPLHELRGH--------NGCVRCSAFSVDST- 1146
Query: 734 RWVITAINFNFQIKIWDAFNGDLVQVL--------KGHTNEVFVLESHPFDSRVLLSAGH 785
++ + N +I+IW+ NG+L+ + H V L P D ++L+SAG
Sbjct: 1147 --LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSP-DGKMLISAG- 1202
Query: 786 DGLIIIWDILSSK 798
G I W++++ +
Sbjct: 1203 -GYIKWWNVVTGE 1214
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 468 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID 527
Q ++ H+S + + F GE +++ + D+ +K+W +DG TL G ++DIAI
Sbjct: 128 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187
Query: 528 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 573
+R + + ++D TIR+W T I + GVN L V
Sbjct: 188 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFV 233
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 468 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID 527
Q ++ H+S + + F GE +++ + D+ +K+W +DG TL G ++DIAI
Sbjct: 131 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190
Query: 528 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 573
+R + + ++D TIR+W T I + GVN L V
Sbjct: 191 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFV 236
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 137 PFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
PF +PV + + P Y +++ PMDL T+ E L+ Y S F+ D++RVF N + YN
Sbjct: 35 PFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYN 91
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 1552 PFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
PF +PV + + P Y +++ PMDL T+ E L+ Y S F+ D++RVF N + YN
Sbjct: 35 PFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYN 91
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%)
Query: 1370 DRDATCEKIITGLEEVMGLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYR 1429
D D + + L++V A PF+ PV ++ DL T+ R +NR+Y
Sbjct: 12 DPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYV 71
Query: 1430 RITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVD 1477
D++ + N +++N P S K A I+ IKE +D
Sbjct: 72 SKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAGLID 119
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNP 60
L T+ R +NR+Y D++ + N +++N P S K A I+ IKE
Sbjct: 58 LKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAGL 117
Query: 61 VD 62
+D
Sbjct: 118 ID 119
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 125 VLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
V + LW + PFR+PVD KL PDY KI+ P D GTI+ L + Y + + +D
Sbjct: 20 VXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDF 79
Query: 183 KRVFHNSRNYNQ 194
F N YN+
Sbjct: 80 NTXFTNCYIYNK 91
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 1540 VLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
V + LW + PFR+PVD KL PDY KI+ P D GTI+ L + Y + + +D
Sbjct: 20 VXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDF 79
Query: 1598 KRVFHNSRNYNQ 1609
F N YN+
Sbjct: 80 NTXFTNCYIYNK 91
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 137 PFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
PF +PV + + P Y +++ PMDL T+ E L+ Y S F+ D++RVF N + YN
Sbjct: 33 PFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYN 89
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 1552 PFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
PF +PV + + P Y +++ PMDL T+ E L+ Y S F+ D++RVF N + YN
Sbjct: 33 PFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYN 89
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%)
Query: 1370 DRDATCEKIITGLEEVMGLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYR 1429
D D + + L++V A PF+ PV ++ DL T+ R +NR+Y
Sbjct: 10 DPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYV 69
Query: 1430 RITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVD 1477
D++ + N +++N P S K A I+ IKE +D
Sbjct: 70 SKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAGLID 117
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNP 60
L T+ R +NR+Y D++ + N +++N P S K A I+ IKE
Sbjct: 56 LKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAGL 115
Query: 61 VD 62
+D
Sbjct: 116 ID 117
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 122 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKD 181
C +L + D+ PF PV+ P Y K++ PMD TIRE+L Y + F D
Sbjct: 15 CSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALD 74
Query: 182 VKRVFHNSRNYNQN 195
V+ VF N +N++
Sbjct: 75 VRLVFDNCETFNED 88
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 1537 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKD 1596
C +L + D+ PF PV+ P Y K++ PMD TIRE+L Y + F D
Sbjct: 15 CSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALD 74
Query: 1597 VKRVFHNSRNYNQN 1610
V+ VF N +N++
Sbjct: 75 VRLVFDNCETFNED 88
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 1373 ATCEKIITGLEEVMGLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRIT 1432
A C I+T +E A PFL+PV++ D +T+R + + Y +
Sbjct: 13 ALCSMILTEMETH---EDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLE 69
Query: 1433 SAQFDVRYLAANAEKFNEPHSNI 1455
+ DVR + N E FNE S+I
Sbjct: 70 TFALDVRLVFDNCETFNEDDSDI 92
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 125 VLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
V + LW + PFR+PVD KL PDY KI+ P D GTI+ L + Y + + +D
Sbjct: 14 VXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDF 73
Query: 183 KRVFHNSRNYNQ 194
F N YN+
Sbjct: 74 NTXFTNCYIYNK 85
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 1540 VLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
V + LW + PFR+PVD KL PDY KI+ P D GTI+ L + Y + + +D
Sbjct: 14 VXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDF 73
Query: 1598 KRVFHNSRNYNQ 1609
F N YN+
Sbjct: 74 NTXFTNCYIYNK 85
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 122 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKD 181
C +L + D+ PF PV+ P Y K++ PMD TIRE+L Y + F D
Sbjct: 18 CSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALD 77
Query: 182 VKRVFHNSRNYNQN 195
V+ VF N +N++
Sbjct: 78 VRLVFDNCETFNED 91
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 1537 CREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKD 1596
C +L + D+ PF PV+ P Y K++ PMD TIRE+L Y + F D
Sbjct: 18 CSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALD 77
Query: 1597 VKRVFHNSRNYNQN 1610
V+ VF N +N++
Sbjct: 78 VRLVFDNCETFNED 91
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 1373 ATCEKIITGLEEVMGLSVAEPFLVPVDISQXXXXXXXXXXXXDLTTLRARFQNRFYRRIT 1432
A C I+T +E A PFL+PV++ D +T+R + + Y +
Sbjct: 16 ALCSMILTEMETHED---AWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLE 72
Query: 1433 SAQFDVRYLAANAEKFNEPHSNI 1455
+ DVR + N E FNE S+I
Sbjct: 73 TFALDVRLVFDNCETFNEDDSDI 95
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 727 VAWDASDRWVITAINFNFQIKIWDAFNGDLVQ-------VLKGHTNEVFVLESHPFDSRV 779
+AW + VI + + + + +W+ +G LV L+GHT V ++ HP V
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 780 LLSAGHDGLIIIWDI 794
LLSAG D +I++WD+
Sbjct: 147 LLSAGXDNVILVWDV 161
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 715 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL-------------- 760
+D+ + ++V+ WD+ A+N F I +A G VL
Sbjct: 21 ADQCYEDVRVSQTTWDSG----FCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPL 76
Query: 761 -KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794
GHT V + P + V+ S D +++W+I
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI 111
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 659 VEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717
V H+ V I W H+ SGS D T ++W D LP +
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIP---------DGGLVLPLREPVITL 127
Query: 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 760
+V +VAW + + V+ + + I +WD G V L
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 124/313 (39%), Gaps = 45/313 (14%)
Query: 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCS-GE-ISDIAIDNRNILLAAGTVDKTIRIW 545
G V+ D+ + LW A G +L L+ GE IS +A LA GT +++W
Sbjct: 127 GNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 185
Query: 546 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 605
++Q + + H + +++ N + L+S S G I + D+ +++ H
Sbjct: 186 DVQQQKRLRNMTSHSARVGSLSW-----NSY-ILSSGSRSGHI----HHHDVRVAE---H 232
Query: 606 EPVMFNERIRPGNAHILCS-SFSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHS 663
+ G++ +C ++P G LA+G D+ V V+ G + + +H
Sbjct: 233 HVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 287
Query: 664 DKVDSIQWS---HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720
V ++ W + L G+ D IW CS CL S
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV-CS---------GACLSAVDAHS----- 332
Query: 721 KIKVTMVAWDASDRWVITAINF-NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 779
+V + W + +I+ F Q+ IW V LKGHT+ V L P D
Sbjct: 333 --QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGAT 389
Query: 780 LLSAGHDGLIIIW 792
+ SA D + +W
Sbjct: 390 VASAAADETLRLW 402
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 33/212 (15%)
Query: 453 SRSLMISSHKYSNLRQHYVNL-GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL- 510
SRS I H H L GH V + + G + +G +D L+ +W + G+
Sbjct: 217 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 276
Query: 511 ---LATLRGCSGEISDIAID--NRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQGIIT 564
L T G + +A N+L GT D+ IRIWN+ + A +S + H + +
Sbjct: 277 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 336
Query: 565 GVNFCP-----LEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619
+ + P + +GF + WKY +++ H +
Sbjct: 337 -ILWSPHYKELISGHGF-------AQNQLVIWKYPTMAKVAELKGH------------TS 376
Query: 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 651
+L + SP G +A+ + D +R+++ +D
Sbjct: 377 RVLSLTMSPDGATVASAAADETLRLWRCFELD 408
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 72/171 (42%), Gaps = 21/171 (12%)
Query: 532 LLAAGTVDKTIRIWNLQTLAPI--SVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588
LLA+ D+ IRIW + + I SVL GHQ + V + P NYLAS S D
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG----NYLASASFDATT 85
Query: 589 GFWKYKLDIDISKTVF--HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYK 646
WK D T HE NE + +++P G LAT S D V V++
Sbjct: 86 CIWKKNQDDFECVTTLEGHE----NE--------VKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 647 MDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 697
+D D + + H+ V + W S S S D T ++ + W
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 58/143 (40%), Gaps = 22/143 (15%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWR----------ARDG-----KLLATLRGC- 517
GH S V+ + FD G+ + + +DD +++WR A G K + TL G
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251
Query: 518 SGEISDIAIDNRNILLAAGTVDKTIRIW----NLQTLAPISVLVG--HQGIITGVNFCPL 571
S I DIA LA D IR++ N P L HQ VN
Sbjct: 252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW 311
Query: 572 EVNGFNYLASTSTDGCIGFWKYK 594
LAS S DG + FWKY+
Sbjct: 312 NPKEPGLLASCSDDGEVAFWKYQ 334
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 19/171 (11%)
Query: 625 SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
+++P G LA+ GD +R++ +G + E H V + WS S S D
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744
T IW K +Q F C+ + +E V VAW S + T + +
Sbjct: 83 ATTCIW--KKNQDDF------ECVTTLEGHENE------VKSVAWAPSGNLLATC-SRDK 127
Query: 745 QIKIWDAFNGD---LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 792
+ +W+ D V VL HT +V + HP +L SA +D + ++
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLY 177
Score = 38.9 bits (89), Expect = 0.028, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 23/180 (12%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR--DGKLLATLRGCSGEISDIAIDNRNI 531
GH V V + G + + + D +W+ D + + TL G E+ +A
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 532 LLAAGTVDKTIRIWNL---QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588
LLA + DK++ +W + +SVL H + V + P + LAS S D +
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ----ELLASASYDDTV 174
Query: 589 GFWKYKLDIDISKTVF--HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYK 646
++ + D + HE +++ +F P G LA+ S D VR+++
Sbjct: 175 KLYREEEDDWVCCATLEGHESTVWS------------LAFDPSGQRLASCSDDRTVRIWR 222
Score = 37.7 bits (86), Expect = 0.062, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 16/160 (10%)
Query: 533 LAAGTVDKTIRIW--NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590
LA+ + D T IW N ++ L GH+ + V + P N LA+ S D +
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP----SGNLLATCSRDKSVWV 131
Query: 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGV 650
W ++ + +E V H++ + P LA+ S D V++Y+ +
Sbjct: 132 W------EVDEEDEYECVSVLNSHTQDVKHVV---WHPSQELLASASYDDTVKLYREEE- 181
Query: 651 DSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 690
D + +E H V S+ + S R S S D T IW
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 71/328 (21%), Positives = 122/328 (37%), Gaps = 45/328 (13%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRA-RDGKLLATLRGCSGEISDIAIDNRNIL 532
GH + V C+ + K IV+ + D + +W + K A C+ ++ A
Sbjct: 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMA-CAYAPSGCA 120
Query: 533 LAAGTVDKTIRIW------NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586
+A G +D ++ N A + H ++ +F N + + S DG
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF----TNSDMQILTASGDG 176
Query: 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRV 644
W D++ + + + A +LC +P G +G D V
Sbjct: 177 TCALW----DVESGQLL--------QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 645 YKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM 704
+ M S + E H V+S+++ S F SGS D T ++ +R D
Sbjct: 225 WDMR---SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD--------LRADR 273
Query: 705 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 764
+ ++KE+ + V + S R + N ++ I +WD G V +L GH
Sbjct: 274 EVAI-YSKESI-----IFGASSVDFSLSGRLLFAGYN-DYTINVWDVLKGSRVSILFGHE 326
Query: 765 NEVFVLESHPFDSRVLLSAGHDGLIIIW 792
N V L P D S D + +W
Sbjct: 327 NRVSTLRVSP-DGTAFCSGSWDHTLRVW 353
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 758 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799
+ LKGH N+V ++ D R ++S+ DG +I+WD ++ +
Sbjct: 58 RTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNK 98
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 727 VAWDASDRWVITAINFNFQIKIWDAFNGDLVQ-------VLKGHTNEVFVLESHPFDSRV 779
+AW + VI + + + + +W+ +G LV L+GHT V ++ HP V
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 780 LLSAGHDGLIIIWDI 794
LLSAG D +I++WD+
Sbjct: 147 LLSAGCDNVILVWDV 161
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 715 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK------------- 761
+D+ + ++V+ WD+ A+N F I +A G VL
Sbjct: 21 ADQCYEDVRVSQTTWDSG----FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPL 76
Query: 762 --GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794
GHT V + P + V+ S D +++W+I
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 64/166 (38%), Gaps = 23/166 (13%)
Query: 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLG 655
D+ +S+T + + P ++C + S GG FL G RV K + PL
Sbjct: 27 DVRVSQTTWDSGFC---AVNPKFMALICEA-SGGGAFLVLPLGKTG-RVDK----NVPL- 76
Query: 656 ILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 714
V H+ V I W H+ SGS D T ++W D LP +
Sbjct: 77 ---VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP---------DGGLVLPLREPV 124
Query: 715 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 760
+V +VAW + + V+ + + I +WD G V L
Sbjct: 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 124/313 (39%), Gaps = 45/313 (14%)
Query: 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCS-GE-ISDIAIDNRNILLAAGTVDKTIRIW 545
G V+ D+ + LW A G +L L+ GE IS +A LA GT +++W
Sbjct: 116 GNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174
Query: 546 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 605
++Q + + H + +++ N + L+S S G I + D+ +++ H
Sbjct: 175 DVQQQKRLRNMTSHSARVGSLSW-----NSY-ILSSGSRSGHI----HHHDVRVAE---H 221
Query: 606 EPVMFNERIRPGNAHILCS-SFSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHS 663
+ G++ +C ++P G LA+G D+ V V+ G + + +H
Sbjct: 222 HVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276
Query: 664 DKVDSIQWS---HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720
V ++ W + L G+ D IW CS CL S
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV-CS---------GACLSAVDAHS----- 321
Query: 721 KIKVTMVAWDASDRWVITAINF-NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 779
+V + W + +I+ F Q+ IW V LKGHT+ V L P D
Sbjct: 322 --QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGAT 378
Query: 780 LLSAGHDGLIIIW 792
+ SA D + +W
Sbjct: 379 VASAAADETLRLW 391
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 33/212 (15%)
Query: 453 SRSLMISSHKYSNLRQHYVNL-GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL- 510
SRS I H H L GH V + + G + +G +D L+ +W + G+
Sbjct: 206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 265
Query: 511 ---LATLRGCSGEISDIAID--NRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQGIIT 564
L T G + +A N+L GT D+ IRIWN+ + A +S + H + +
Sbjct: 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 325
Query: 565 GVNFCP-----LEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619
+ + P + +GF + WKY +++ H +
Sbjct: 326 -ILWSPHYKELISGHGF-------AQNQLVIWKYPTMAKVAELKGH------------TS 365
Query: 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 651
+L + SP G +A+ + D +R+++ +D
Sbjct: 366 RVLSLTMSPDGATVASAAADETLRLWRCFELD 397
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 119 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELR---GDNYESP 175
+ +C +L L+ S F++PV P+Y KI+ PMDL T++++L+ +Y+ P
Sbjct: 83 QRKCERLLLYLYCHELSIEFQEPV-PASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIP 141
Query: 176 IDFVKDVKRVFHNSRNYNQ-NKRSKIYIMTTRLS 208
DFV DV+ +F N +N+ K ++Y T ++
Sbjct: 142 DDFVADVRLIFKNCERFNEMMKVVQVYADTQEIN 175
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 1534 KNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELR---GDNYESP 1590
+ +C +L L+ S F++PV P+Y KI+ PMDL T++++L+ +Y+ P
Sbjct: 83 QRKCERLLLYLYCHELSIEFQEPV-PASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIP 141
Query: 1591 IDFVKDVKRVFHNSRNYNQ-NKRSKIYIMTTRLS 1623
DFV DV+ +F N +N+ K ++Y T ++
Sbjct: 142 DDFVADVRLIFKNCERFNEMMKVVQVYADTQEIN 175
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 122 CREVLETLWV---CPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPI 176
C E+L+ + P + PF PVD L +Y +V PMDLGTI+ ++ Y+
Sbjct: 19 CSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAY 78
Query: 177 DFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 218
+F DV+ +F N YN ++ M L + E H ++
Sbjct: 79 EFAADVRLMFMNCYKYNPPDH-EVVAMARTLQDVFELHFAKI 119
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 1537 CREVLETLWV---CPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPI 1591
C E+L+ + P + PF PVD L +Y +V PMDLGTI+ ++ Y+
Sbjct: 19 CSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAY 78
Query: 1592 DFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL 1633
+F DV+ +F N YN ++ M L + E H ++
Sbjct: 79 EFAADVRLMFMNCYKYNPPDH-EVVAMARTLQDVFELHFAKI 119
Score = 37.4 bits (85), Expect = 0.082, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 1375 CEKIITGLEEVMGLSVAEPFLVPVDISQX--XXXXXXXXXXXDLTTLRARFQNRFYRRIT 1432
C +I+ + L A PF PVD DL T++ + N+ Y+
Sbjct: 19 CSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAY 78
Query: 1433 SAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 1474
DVR + N K+N P +V AR + D+ L K P+
Sbjct: 79 EFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKIPD 121
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 59
L T++ + N+ Y+ DVR + N K+N P +V AR + D+ L K P+
Sbjct: 62 LGTIKGKMDNQEYKDAYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKIPD 121
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 40/227 (17%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-LLATLRGCSGEISDIAIDNRNIL 532
GH + V C+ +++ V+ +G+ I R + TL+G S E+ +A + +
Sbjct: 174 GHQARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ 231
Query: 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
LA+G D ++IW+ ++ P H + V +CP + N T D I FW
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT-MDKQIHFWN 290
Query: 593 YKLD-----IDISKTVF------HEPVMFNERIRPGN-------------------AH-- 620
+D V H + + P N AH
Sbjct: 291 AATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT 350
Query: 621 -ILCSSFSPGGLFLATGSGDHHV---RVYKMDGVDSPLGILEVEEHS 663
+L S+ SP G L+T + D ++ RVY D V P+ I + S
Sbjct: 351 RVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSS 397
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 103/284 (36%), Gaps = 57/284 (20%)
Query: 526 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAST--S 583
+D N+ + A +++ + +WN + +S L E + Y+AS S
Sbjct: 99 LDWSNLNVVAVALERNVYVWNADS-GSVSALA--------------ETDESTYVASVKWS 143
Query: 584 TDGC---IGFWKYKLDIDISKTVFHEPVMFNERIRPG----NAHILCSSFSPGGLFLATG 636
DG +G +DI ++ M + R G N H+L S G +
Sbjct: 144 HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIH---- 199
Query: 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 696
H VR+ + +G L+ HS +V + W L+ SG D IW + S
Sbjct: 200 --HHDVRI-----ANHQIGTLQ--GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI 250
Query: 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD--ASDRWVITAINFNFQIKIWDAFNG 754
+F + TN V VAW S+ + QI W+A G
Sbjct: 251 PKFTK----------------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294
Query: 755 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-DGLIIIWDILSS 797
V + + +V L P ++ + G D + IW SS
Sbjct: 295 ARVNTVDAGS-QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 490 VIVTGADDLLIKLWRARD-------GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTI 542
V+++G+ D + +W+ + G L G + +SD+A+ N + + DKT+
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 543 RIWNLQTLAPISVLVGHQGIITGVNFCP 570
R+W+L+T VGHQ + V F P
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 25/150 (16%)
Query: 655 GILEVEEHSDKVDSIQWSHSHLR------FVSGSRDGTALIW-YYKCSQWRFIRLDMNTC 707
GILE HSD V SI S +SGSRD T +IW Y+ Q + +
Sbjct: 15 GILE--GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL 72
Query: 708 LPHTKETSDE--TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765
H SD + + +WD + +++WD G + GH +
Sbjct: 73 TGHNHFVSDLALSQENCFAISSSWDKT-------------LRLWDLRTGTTYKRFVGHQS 119
Query: 766 EVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795
EV+ + P D+R +LSAG + I +W+IL
Sbjct: 120 EVYSVAFSP-DNRQILSAGAEREIKLWNIL 148
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 33/203 (16%)
Query: 461 HKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGE 520
HK H+V+ LS C ++ + D ++LW R G G E
Sbjct: 69 HKALTGHNHFVSDLALSQENCF--------AISSSWDKTLRLWDLRTGTTYKRFVGHQSE 120
Query: 521 ISDIAI--DNRNILLAAGTVDKTIRIWNLQTLAPISVL--VGHQGIITGVNFCPL----- 571
+ +A DNR IL A ++ I++WN+ S H ++ V + P+
Sbjct: 121 VYSVAFSPDNRQILSAG--AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN 178
Query: 572 EVNGFN-YLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630
+V F Y AS DG + W I + + N + L S SP G
Sbjct: 179 KVQPFAPYFASVGWDGRLKVWNTNFQI-----------RYTFKAHESNVNHL--SISPNG 225
Query: 631 LFLATGSGDHHVRVYKMDGVDSP 653
++ATG D + ++ + + P
Sbjct: 226 KYIATGGKDKKLLIWDILNLTYP 248
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 94/273 (34%), Gaps = 77/273 (28%)
Query: 532 LLAAGTVDKTIRIWNLQT-------LAPISVLVGHQGIITGVNFCPLEVNGFNYLA-STS 583
+L +G+ DKT+ IW L P L GH ++ L ++ N A S+S
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS-----DLALSQENCFAISSS 95
Query: 584 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVR 643
D + W + + V H+ +++ P N IL + + ++
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL------------SAGAEREIK 143
Query: 644 VYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLD 703
++ + G + E E HSD V +++S I
Sbjct: 144 LWNILG-ECKFSSAEKENHSDWVSCVRYSP--------------------------IMKS 176
Query: 704 MNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH 763
N P + V WD + N NFQI+ K H
Sbjct: 177 ANKVQPFAPYFAS----------VGWDGR----LKVWNTNFQIRY----------TFKAH 212
Query: 764 TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796
+ V L P + + + + G D ++IWDIL+
Sbjct: 213 ESNVNHLSISP-NGKYIATGGKDKKLLIWDILN 244
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 137 PFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
PF KPVD L+ DY I+ PMDL T++ ++ G Y F DV+ +F N YN
Sbjct: 35 PFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYN 93
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1552 PFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
PF KPVD L+ DY I+ PMDL T++ ++ G Y F DV+ +F N YN
Sbjct: 35 PFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYN 93
Score = 35.4 bits (80), Expect = 0.31, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 1375 CEKIITGLEEVMGLSVAEPFLVPVDIS--QXXXXXXXXXXXXDLTTLRARFQNRFYRRIT 1432
C+ I+ + + A PF PVD + DL+T++ + R Y
Sbjct: 17 CDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQ 76
Query: 1433 SAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL 1466
DVR + +N K+N P +V AR + D+
Sbjct: 77 GFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 110
Score = 30.4 bits (67), Expect = 9.4, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL 51
L+T++ + R Y DVR + +N K+N P +V AR + D+
Sbjct: 60 LSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 110
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 137 PFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
PF KPVD L+ DY I+ PMDL T++ ++ G Y F DV+ +F N YN
Sbjct: 30 PFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYN 88
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1552 PFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
PF KPVD L+ DY I+ PMDL T++ ++ G Y F DV+ +F N YN
Sbjct: 30 PFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYN 88
Score = 37.0 bits (84), Expect = 0.094, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 1375 CEKIITGLEEVMGLSVAEPFLVPVDIS--QXXXXXXXXXXXXDLTTLRARFQNRFYRRIT 1432
C+ I+ + + A PF PVD + DL+T++ + R Y
Sbjct: 12 CDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQ 71
Query: 1433 SAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEP 1473
DVR + +N K+N P +V AR + D+ +R K P
Sbjct: 72 GFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 113
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEP 58
L+T++ + R Y DVR + +N K+N P +V AR + D+ +R K P
Sbjct: 55 LSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 113
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
SEPF + VDK + P+Y +IV +PM L +++ L Y DF+ D+ VF N+ +N
Sbjct: 231 SEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFN- 289
Query: 195 NKRSKIYIMTTRLSEF 210
+ + IY T L+ +
Sbjct: 290 DPSALIYKDATTLTNY 305
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
SEPF + VDK + P+Y +IV +PM L +++ L Y DF+ D+ VF N+ +N
Sbjct: 231 SEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFN- 289
Query: 1610 NKRSKIYIMTTRLSEF 1625
+ + IY T L+ +
Sbjct: 290 DPSALIYKDATTLTNY 305
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
SEPF + VDK + P+Y +IV +PM L +++ L Y DF+ D+ VF N+ +N
Sbjct: 216 SEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFN- 274
Query: 195 NKRSKIYIMTTRLSEF 210
+ + IY T L+ +
Sbjct: 275 DPSALIYKDATTLTNY 290
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
SEPF + VDK + P+Y +IV +PM L +++ L Y DF+ D+ VF N+ +N
Sbjct: 216 SEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFN- 274
Query: 1610 NKRSKIYIMTTRLSEF 1625
+ + IY T L+ +
Sbjct: 275 DPSALIYKDATTLTNY 290
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 61/324 (18%), Positives = 118/324 (36%), Gaps = 40/324 (12%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GHL+ ++ + + ++V+ + D + +W + + + S + A +
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 534 AAGTVDKTIRIWNLQTL-APISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589
A G +D I+NL+T + V L GH G ++ F N + ++S D
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-----DDNQIVTSSGDTTCA 167
Query: 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG 649
W + + H ++ S +P +G+ D +++
Sbjct: 168 LWDIETGQQTTTFTGH------------TGDVMSLSLAPDTRLFVSGACDASAKLWD--- 212
Query: 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709
V + H +++I + + F +GS D T ++ + Q
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---------- 262
Query: 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
T N +T V++ S R ++ + +F +WDA D VL GH N V
Sbjct: 263 ----TYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 770 LESHPFDSRVLLSAGHDGLIIIWD 793
L D + + D + IW+
Sbjct: 318 LGVTD-DGMAVATGSWDSFLKIWN 340
Score = 35.0 bits (79), Expect = 0.45, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 758 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799
+ L+GH +++ + DSR+L+SA DG +IIWD ++ +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK 89
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 61/324 (18%), Positives = 118/324 (36%), Gaps = 40/324 (12%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GHL+ ++ + + ++V+ + D + +W + + + S + A +
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 534 AAGTVDKTIRIWNLQTL-APISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589
A G +D I+NL+T + V L GH G ++ F N + ++S D
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-----DDNQIVTSSGDTTCA 167
Query: 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG 649
W + + H ++ S +P +G+ D +++
Sbjct: 168 LWDIETGQQTTTFTGH------------TGDVMSLSLAPDTRLFVSGACDASAKLWD--- 212
Query: 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709
V + H +++I + + F +GS D T ++ + Q
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---------- 262
Query: 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
T N +T V++ S R ++ + +F +WDA D VL GH N V
Sbjct: 263 ----TYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 770 LESHPFDSRVLLSAGHDGLIIIWD 793
L D + + D + IW+
Sbjct: 318 LGVTD-DGMAVATGSWDSFLKIWN 340
Score = 35.0 bits (79), Expect = 0.45, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 758 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799
+ L+GH +++ + DSR+L+SA DG +IIWD ++ +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK 89
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 61/324 (18%), Positives = 118/324 (36%), Gaps = 40/324 (12%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GHL+ ++ + + ++V+ + D + +W + + + S + A +
Sbjct: 64 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 123
Query: 534 AAGTVDKTIRIWNLQTL-APISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589
A G +D I+NL+T + V L GH G ++ F N + ++S D
Sbjct: 124 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-----DDNQIVTSSGDTTCA 178
Query: 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG 649
W + + H ++ S +P +G+ D +++
Sbjct: 179 LWDIETGQQTTTFTGH------------TGDVMSLSLAPDTRLFVSGACDASAKLWD--- 223
Query: 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709
V + H +++I + + F +GS D T ++ + Q
Sbjct: 224 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---------- 273
Query: 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
T N +T V++ S R ++ + +F +WDA D VL GH N V
Sbjct: 274 ----TYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSC 328
Query: 770 LESHPFDSRVLLSAGHDGLIIIWD 793
L D + + D + IW+
Sbjct: 329 LGVTD-DGMAVATGSWDSFLKIWN 351
Score = 35.0 bits (79), Expect = 0.45, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 758 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799
+ L+GH +++ + DSR+L+SA DG +IIWD ++ +
Sbjct: 60 RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK 100
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 137 PFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
PF KPVD L DY I+ PMDL T++ ++ +Y +F DV+ +F N YN
Sbjct: 30 PFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 88
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1552 PFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
PF KPVD L DY I+ PMDL T++ ++ +Y +F DV+ +F N YN
Sbjct: 30 PFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 88
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 1375 CEKIITGLEEVMGLSVAEPFLVPVDISQX--XXXXXXXXXXXDLTTLRARFQNRFYRRIT 1432
C I+ L + A PF PVD S DL+T++ + +NR YR
Sbjct: 12 CNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQ 71
Query: 1433 SAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 1474
DVR + +N K+N P ++V AR + D+ R K P+
Sbjct: 72 EFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 114
Score = 38.5 bits (88), Expect = 0.037, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 59
L+T++ + +NR YR DVR + +N K+N P ++V AR + D+ R K P+
Sbjct: 55 LSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 114
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 137 PFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
PF KPVD L DY I+ PMDL T++ ++ +Y +F DV+ +F N YN
Sbjct: 28 PFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 86
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1552 PFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
PF KPVD L DY I+ PMDL T++ ++ +Y +F DV+ +F N YN
Sbjct: 28 PFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 86
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 1375 CEKIITGLEEVMGLSVAEPFLVPVDISQX--XXXXXXXXXXXDLTTLRARFQNRFYRRIT 1432
C I+ L + A PF PVD S DL+T++ + +NR YR
Sbjct: 10 CNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQ 69
Query: 1433 SAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 1474
DVR + +N K+N P ++V AR + D+ R K P+
Sbjct: 70 EFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 112
Score = 38.5 bits (88), Expect = 0.036, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 59
L+T++ + +NR YR DVR + +N K+N P ++V AR + D+ R K P+
Sbjct: 53 LSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 112
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 137 PFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
PF KPVD L DY I+ PMDL T++ ++ +Y +F DV+ +F N YN
Sbjct: 24 PFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 82
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1552 PFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
PF KPVD L DY I+ PMDL T++ ++ +Y +F DV+ +F N YN
Sbjct: 24 PFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 82
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 1375 CEKIITGLEEVMGLSVAEPFLVPVDISQX--XXXXXXXXXXXDLTTLRARFQNRFYRRIT 1432
C I+ L + A PF PVD S DL+T++ + +NR YR
Sbjct: 6 CNVILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQ 65
Query: 1433 SAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 1474
DVR + +N K+N P ++V AR + D+ R K P+
Sbjct: 66 EFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 108
Score = 38.1 bits (87), Expect = 0.042, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 59
L+T++ + +NR YR DVR + +N K+N P ++V AR + D+ R K P+
Sbjct: 49 LSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 108
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV 538
+ + + G+ + +GA D +I ++ GKLL TL G + I + + LL +
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCP 570
D I+I+++Q L GH + V FCP
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 489 EVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546
E +VTG+ D L+K+W+ RD + L +L G + + I + + A+ ++D IR+W+
Sbjct: 49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108
Query: 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 606
L+ I + + F P YLA+ + G + ++ K +
Sbjct: 109 LENGKQIKSIDAGPVDAWTLAFSPDS----QYLATGTHVGKVNI----FGVESGKKEY-- 158
Query: 607 PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL--EVEEHSD 664
+ IL ++SP G +LA+G+ D + ++ D G L +E H+
Sbjct: 159 ------SLDTRGKFILSIAYSPDGKYLASGAIDGIINIF-----DIATGKLLHTLEGHAM 207
Query: 665 KVDSIQWSHSHLRFVSGSRDG 685
+ S+ +S V+ S DG
Sbjct: 208 PIRSLTFSPDSQLLVTASDDG 228
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 746 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG 801
I I+D G L+ L+GH + L P DS++L++A DG I I+D+ + G
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAG 242
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 47/95 (49%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH + + F +++VT +DD IK++ + L TL G + + ++A +
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNF 568
+ + DK++++W++ T + HQ + GV +
Sbjct: 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 298
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 99/249 (39%), Gaps = 40/249 (16%)
Query: 533 LAAGTVDKTIRIWNL--QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590
+ G++D +++W + L L GHQ + V+ + AS+S D I
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS----HTLPIAASSSLDAHIRL 106
Query: 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGV 650
W D++ K + + I G +FSP +LATG+ HV + GV
Sbjct: 107 W----DLENGKQI--------KSIDAGPVDAWTLAFSPDSQYLATGT---HVGKVNIFGV 151
Query: 651 DSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC-LP 709
+S ++ + SI +S SG+ DG I D+ T L
Sbjct: 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINI------------FDIATGKLL 199
Query: 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
HT E + + + + + ++TA + + IKI+D + +L L GH + V
Sbjct: 200 HTLE-----GHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSGHASWVLN 253
Query: 770 LESHPFDSR 778
+ P D+
Sbjct: 254 VAFCPDDTH 262
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 18/175 (10%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH V V + + + D I+LW +GK + ++ + +A + L
Sbjct: 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYL 137
Query: 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593
A GT + I+ +++ L I + + P +G YLAS + DG I
Sbjct: 138 ATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP---DG-KYLASGAIDGIINI--- 190
Query: 594 KLDIDISKTVFHEPVMFNERIRPGNAH-ILCSSFSPGGLFLATGSGDHHVRVYKM 647
DI K + G+A I +FSP L T S D ++++Y +
Sbjct: 191 -FDIATGKLL---------HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 74/313 (23%), Positives = 124/313 (39%), Gaps = 45/313 (14%)
Query: 488 GEVIVTGADDLLIKLWRARDGKLLATLR-GCSGE-ISDIAIDNRNILLAAGTVDKTIRIW 545
G V+ D+ + LW A G +L L+ GE IS +A LA GT +++W
Sbjct: 36 GNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
Query: 546 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 605
++Q + + H + +++ N + L+S S G I + D+ +++ H
Sbjct: 95 DVQQQKRLRNMTSHSARVGSLSW-----NSY-ILSSGSRSGHI----HHHDVRVAE---H 141
Query: 606 EPVMFNERIRPGNAHILCS-SFSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHS 663
+ G++ +C ++P G LA+G D+ V V+ G + + +H
Sbjct: 142 HVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 664 DKVDSIQW---SHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720
V ++ W + L G+ D IW CS CL S
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV-CS---------GACLSAVDAHS----- 241
Query: 721 KIKVTMVAWDASDRWVITAINF-NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 779
+V + W + +I+ F Q+ IW V LKGHT+ V L P D
Sbjct: 242 --QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGAT 298
Query: 780 LLSAGHDGLIIIW 792
+ SA D + +W
Sbjct: 299 VASAAADETLRLW 311
Score = 39.3 bits (90), Expect = 0.023, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 29/205 (14%)
Query: 453 SRSLMISSHKYSNLRQHYVNL-GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-- 509
SRS I H H L GH V + + G + +G +D L+ +W + G+
Sbjct: 126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185
Query: 510 --LLATLRGCSGEISDIAID--NRNIL-LAAGTVDKTIRIWNLQTLAPISVLVGHQ---G 561
L T G + +A N+L GT D+ IRIWN+ + A +S + H
Sbjct: 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 245
Query: 562 IITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621
I+ ++ L ++G + + + WKY +++ H + +
Sbjct: 246 ILWSPHYKEL-ISGHGFAQNQ-----LVIWKYPTMAKVAELKGH------------TSRV 287
Query: 622 LCSSFSPGGLFLATGSGDHHVRVYK 646
L + SP G +A+ + D +R+++
Sbjct: 288 LSLTMSPDGATVASAAADETLRLWR 312
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 137 PFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
PF KPVD L DY I+ PMD+ TI+ +L Y +F DV+ +F N YN
Sbjct: 24 PFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYN 82
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 1552 PFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
PF KPVD L DY I+ PMD+ TI+ +L Y +F DV+ +F N YN
Sbjct: 24 PFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYN 82
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 1375 CEKIITGLEEVMGLSVAEPFLVPVDISQXXXXX--XXXXXXXDLTTLRARFQNRFYRRIT 1432
C I+ + + A PF PVD+ D++T++++ + R YR
Sbjct: 6 CSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQ 65
Query: 1433 SAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL 1466
DVR + +N K+N P +V AR + D+
Sbjct: 66 EFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 99
Score = 35.0 bits (79), Expect = 0.39, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL 51
++T++++ + R YR DVR + +N K+N P +V AR + D+
Sbjct: 49 MSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 99
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 138 FRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196
F KPVD + DY +++ PMDL T+ ++ NY + DF+KD+ + N+ YN +K
Sbjct: 33 FSKPVDIEEVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDK 91
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1553 FRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611
F KPVD + DY +++ PMDL T+ ++ NY + DF+KD+ + N+ YN +K
Sbjct: 33 FSKPVDIEEVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDK 91
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 68/275 (24%), Positives = 105/275 (38%), Gaps = 44/275 (16%)
Query: 449 SGPLSRSLMISSHKYSNLRQHYV--NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLW--- 503
+G R + + S KY + V H A+ V + ++ G+ D + +W
Sbjct: 29 TGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88
Query: 504 ----RARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL----QTLAPISV 555
R + LLA + G E+ +A N LA + DK++ IW + ISV
Sbjct: 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV 148
Query: 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK-YKLDIDISKTVFHEPVMFNERI 614
L H + V + P E LAS+S D + WK Y D + +
Sbjct: 149 LQEHSQDVKHVIWHPSEA----LLASSSYDDTVRIWKDYDDDWECVAVL----------- 193
Query: 615 RPGNAH---ILCSSF--SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE------HS 663
N H + S F + G L +GS D VRV+K G D V E H
Sbjct: 194 ---NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250
Query: 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698
+V ++ W + L S DG ++ +W+
Sbjct: 251 RQVYNVAWGFNGL-IASVGADGVLAVYEEVDGEWK 284
Score = 44.7 bits (104), Expect = 6e-04, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 626 FSPGGLFLATGSGDHHVRVYKMDGVDSPL-GILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684
FS G LATGS D +++ + D L +L+ H + S+ W +GS D
Sbjct: 22 FSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLP-HTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743
T IW + S R +D+ + H E V VAW ++D + + + +
Sbjct: 80 STVSIWAKEESADRTFEMDLLAIIEGHENE----------VKGVAW-SNDGYYLATCSRD 128
Query: 744 FQIKIWDAFNG----DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 792
+ IW+ + + VL+ H+ +V + HP ++ +L S+ +D + IW
Sbjct: 129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIW 180
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 14/164 (8%)
Query: 532 LLAAGTVDKTIRIWNLQ----TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587
+LA G+ D+ I++ +++ TL + H+ I V + P + LA+ S D
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT----SLLAAGSFDST 81
Query: 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 647
+ W + D F ++ I + ++S G +LAT S D V +++
Sbjct: 82 VSIWAKEESAD---RTFEMDLL--AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136
Query: 648 DGVDSPLGILEV-EEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 690
D + V +EHS V + W S S S D T IW
Sbjct: 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 60/324 (18%), Positives = 118/324 (36%), Gaps = 40/324 (12%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GHL+ ++ + + ++++ + D + +W + + + S + A +
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 534 AAGTVDKTIRIWNLQTL-APISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589
A G +D I+NL+T + V L GH G ++ F N + ++S D
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-----DDNQIVTSSGDTTCA 167
Query: 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG 649
W + + H ++ S +P +G+ D +++
Sbjct: 168 LWDIETGQQTTTFTGH------------TGDVMSLSLAPDTRLFVSGACDASAKLWD--- 212
Query: 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709
V + H +++I + + F +GS D T ++ + Q
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---------- 262
Query: 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
T N +T V++ S R ++ + +F +WDA D VL GH N V
Sbjct: 263 ----TYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 770 LESHPFDSRVLLSAGHDGLIIIWD 793
L D + + D + IW+
Sbjct: 318 LGVTD-DGMAVATGSWDSFLKIWN 340
Score = 36.2 bits (82), Expect = 0.18, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 758 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799
+ L+GH +++ + DSR+LLSA DG +IIWD ++ +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNK 89
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 60/324 (18%), Positives = 118/324 (36%), Gaps = 40/324 (12%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GHL+ ++ + + ++++ + D + +W + + + S + A +
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 534 AAGTVDKTIRIWNLQTL-APISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589
A G +D I+NL+T + V L GH G ++ F N + ++S D
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-----DDNQIVTSSGDTTCA 167
Query: 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG 649
W + + H ++ S +P +G+ D +++
Sbjct: 168 LWDIETGQQTTTFTGH------------TGDVMSLSLAPDTRLFVSGACDASAKLWD--- 212
Query: 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709
V + H +++I + + F +GS D T ++ + Q
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---------- 262
Query: 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
T N +T V++ S R ++ + +F +WDA D VL GH N V
Sbjct: 263 ----TYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 770 LESHPFDSRVLLSAGHDGLIIIWD 793
L D + + D + IW+
Sbjct: 318 LGVTD-DGMAVATGSWDSFLKIWN 340
Score = 36.2 bits (82), Expect = 0.18, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 758 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799
+ L+GH +++ + DSR+LLSA DG +IIWD ++ +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNK 89
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 32/241 (13%)
Query: 556 LVGHQGIITGVNFCPLEVNGF-NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI 614
L GH G +T + P F + + S S D I WK D +T + P +R
Sbjct: 11 LKGHNGWVTQIATTPQ----FPDMILSASRDKTIIMWKLTRD----ETNYGIP----QRA 58
Query: 615 RPGNAHILCSS-FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673
G++H + S G F +GS D +R++ + + H+ V S+ +S
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT---TGTTTRRFVGHTKDVLSVAFSS 115
Query: 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733
+ + VSGSRD T +W NT DE++ + + S
Sbjct: 116 DNRQIVSGSRDKTIKLW--------------NTLGVCKYTVQDESHSEWVSCVRFSPNSS 161
Query: 734 RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
+I + ++ +K+W+ N L GHT + + P D + S G DG ++WD
Sbjct: 162 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWD 220
Query: 794 I 794
+
Sbjct: 221 L 221
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 10/181 (5%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH V V+ G+ ++G+ D ++LW G G + ++ +A + N +
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 534 AAGTVDKTIRIWNLQTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
+G+ DKTI++WN + +V H ++ V F P N + S D + W
Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI--IVSCGWDKLVKVWN 178
Query: 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG--LFLATGSGDHHVRVYKMDGV 650
+ + H + + P + LC+S G + G H +Y +DG
Sbjct: 179 LANCKLKTNHIGHTGYLNTVTVSPDGS--LCASGGKDGQAMLWDLNEGKH---LYTLDGG 233
Query: 651 D 651
D
Sbjct: 234 D 234
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 25/209 (11%)
Query: 489 EVIVTGADDLLIKLWR-ARD----GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543
++I++ + D I +W+ RD G LRG S +SD+ I + +G+ D T+R
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603
+W+L T VGH + V F + S S D I W + + K
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDN----RQIVSGSRDKTIKLWN---TLGVCKYT 141
Query: 604 FHEPVMFNERIRPGNAHILCSSFSPGGL--FLATGSGDHHVRVYKMDGVDSPLGILEVEE 661
+ + + C FSP + + D V+V+ + + L +
Sbjct: 142 VQD--------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL--ANCKLKTNHI-G 190
Query: 662 HSDKVDSIQWSHSHLRFVSGSRDGTALIW 690
H+ ++++ S SG +DG A++W
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 47/237 (19%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD--------- 523
+GH V V F IV+G+ D IKLW TL C + D
Sbjct: 102 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN--------TLGVCKYTVQDESHSEWVSC 153
Query: 524 --IAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAS 581
+ ++ N ++ + DK +++WNL + +GH G + V P +G + AS
Sbjct: 154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP---DG-SLCAS 209
Query: 582 TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 641
DG W D++ K ++ G I FSP +L +G
Sbjct: 210 GGKDGQAMLW----DLNEGKHLY---------TLDGGDIINALCFSPNRYWLCAATGP-S 255
Query: 642 VRVYKMDG---VDSPLGILEVEEHSDKVD-----SIQWSHSHLRFVSGSRDGTALIW 690
++++ ++G VD EV S K + S+ WS +G D +W
Sbjct: 256 IKIWDLEGKIIVDELK--QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 310
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 32/218 (14%)
Query: 632 FLATGSGDHHVRVYKMDGVDSPLGILE--VEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 689
+ + S D + ++K+ ++ GI + + HS V + S +SGS DGT +
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 690 W--YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747
W + RF+ HTK+ V VA+ + +R +++ + + IK
Sbjct: 90 WDLTTGTTTRRFV--------GHTKD----------VLSVAFSSDNRQIVSG-SRDKTIK 130
Query: 748 IWDAFNGDLVQVL-KGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSSKQRGYKWF 805
+W+ V + H+ V + P S +++S G D L+ +W++ + K +
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 190
Query: 806 HNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843
H G L SPDG+ CA G +++ L
Sbjct: 191 HT-------GYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 457 MISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG 516
++ +N + ++GH + V G + +G D LW +GK L TL G
Sbjct: 173 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 517 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ 548
G+I + + N +I+IW+L+
Sbjct: 233 --GDIINALCFSPNRYWLCAATGPSIKIWDLE 262
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 32/241 (13%)
Query: 556 LVGHQGIITGVNFCPLEVNGF-NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI 614
L GH G +T + P F + + S S D I WK D +T + P +R
Sbjct: 34 LKGHNGWVTQIATTPQ----FPDMILSASRDKTIIMWKLTRD----ETNYGIP----QRA 81
Query: 615 RPGNAHILCSS-FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673
G++H + S G F +GS D +R++ + + H+ V S+ +S
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT---TGTTTRRFVGHTKDVLSVAFSS 138
Query: 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733
+ + VSGSRD T +W NT DE++ + + S
Sbjct: 139 DNRQIVSGSRDKTIKLW--------------NTLGVCKYTVQDESHSEWVSCVRFSPNSS 184
Query: 734 RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
+I + ++ +K+W+ N L GHT + + P D + S G DG ++WD
Sbjct: 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWD 243
Query: 794 I 794
+
Sbjct: 244 L 244
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 10/181 (5%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH V V+ G+ ++G+ D ++LW G G + ++ +A + N +
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 534 AAGTVDKTIRIWNLQTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592
+G+ DKTI++WN + +V H ++ V F P N + S D + W
Sbjct: 144 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI--IVSCGWDKLVKVWN 201
Query: 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG--LFLATGSGDHHVRVYKMDGV 650
+ + H + + P + LC+S G + G H +Y +DG
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGS--LCASGGKDGQAMLWDLNEGKH---LYTLDGG 256
Query: 651 D 651
D
Sbjct: 257 D 257
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 25/209 (11%)
Query: 489 EVIVTGADDLLIKLWR-ARD----GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543
++I++ + D I +W+ RD G LRG S +SD+ I + +G+ D T+R
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603
+W+L T VGH + V F + S S D I W + + K
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDN----RQIVSGSRDKTIKLWN---TLGVCKYT 164
Query: 604 FHEPVMFNERIRPGNAHILCSSFSPGGL--FLATGSGDHHVRVYKMDGVDSPLGILEVEE 661
+ + + C FSP + + D V+V+ + + L +
Sbjct: 165 VQD--------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL--ANCKLKTNHI-G 213
Query: 662 HSDKVDSIQWSHSHLRFVSGSRDGTALIW 690
H+ ++++ S SG +DG A++W
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 47/237 (19%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD--------- 523
+GH V V F IV+G+ D IKLW TL C + D
Sbjct: 125 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN--------TLGVCKYTVQDESHSEWVSC 176
Query: 524 --IAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAS 581
+ ++ N ++ + DK +++WNL + +GH G + V P +G + AS
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP---DG-SLCAS 232
Query: 582 TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 641
DG W D++ K ++ G I FSP +L +G
Sbjct: 233 GGKDGQAMLW----DLNEGKHLY---------TLDGGDIINALCFSPNRYWLCAATGP-S 278
Query: 642 VRVYKMDG---VDSPLGILEVEEHSDKVD-----SIQWSHSHLRFVSGSRDGTALIW 690
++++ ++G VD EV S K + S+ WS +G D +W
Sbjct: 279 IKIWDLEGKIIVDELK--QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 32/218 (14%)
Query: 632 FLATGSGDHHVRVYKMDGVDSPLGILE--VEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 689
+ + S D + ++K+ ++ GI + + HS V + S +SGS DGT +
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 690 W--YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747
W + RF+ HTK+ V VA+ + +R +++ + + IK
Sbjct: 113 WDLTTGTTTRRFV--------GHTKD----------VLSVAFSSDNRQIVSG-SRDKTIK 153
Query: 748 IWDAFNGDLVQVL-KGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSSKQRGYKWF 805
+W+ V + H+ V + P S +++S G D L+ +W++ + K +
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 213
Query: 806 HNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843
H G L SPDG+ CA G +++ L
Sbjct: 214 HT-------GYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 457 MISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG 516
++ +N + ++GH + V G + +G D LW +GK L TL G
Sbjct: 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 517 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ 548
G+I + + N +I+IW+L+
Sbjct: 256 --GDIINALCFSPNRYWLCAATGPSIKIWDLE 285
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 137 PFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
PF KPVD L DY I+ PMD+ TI+ +L Y +F DV+ +F N YN
Sbjct: 32 PFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYN 90
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 1552 PFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
PF KPVD L DY I+ PMD+ TI+ +L Y +F DV+ +F N YN
Sbjct: 32 PFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYN 90
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 1375 CEKIITGLEEVMGLSVAEPFLVPVDISQXXXXX--XXXXXXXDLTTLRARFQNRFYRRIT 1432
C I+ + + A PF PVD+ D++T++++ ++R YR
Sbjct: 14 CSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQ 73
Query: 1433 SAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 1474
DVR + +N K+N P +V AR + D+ +R K P+
Sbjct: 74 EFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116
Score = 37.7 bits (86), Expect = 0.055, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 59
++T++++ ++R YR DVR + +N K+N P +V AR + D+ +R K P+
Sbjct: 57 MSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 44.3 bits (103), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
SE F+K K+ +PDY I+ P+DL TI + ++ +Y+S KD+ + N++ YN+
Sbjct: 33 SELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNE 92
Score = 44.3 bits (103), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
SE F+K K+ +PDY I+ P+DL TI + ++ +Y+S KD+ + N++ YN+
Sbjct: 33 SELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNE 92
Score = 38.9 bits (89), Expect = 0.031, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 1415 DLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL 1466
DL T+ R QN Y+ I + D+ LA NA+ +NEP S + K A I +
Sbjct: 57 DLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIF 108
Score = 36.6 bits (83), Expect = 0.16, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL 51
L T+ R QN Y+ I + D+ LA NA+ +NEP S + K A I +
Sbjct: 58 LKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIF 108
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 44.3 bits (103), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
SE F+K K+ +PDY I+ P+DL TI + ++ +Y+S KD+ + N++ YN+
Sbjct: 32 SELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNE 91
Score = 44.3 bits (103), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
SE F+K K+ +PDY I+ P+DL TI + ++ +Y+S KD+ + N++ YN+
Sbjct: 32 SELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNE 91
Score = 38.9 bits (89), Expect = 0.031, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 1415 DLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL 1466
DL T+ R QN Y+ I + D+ LA NA+ +NEP S + K A I +
Sbjct: 56 DLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIF 107
Score = 36.6 bits (83), Expect = 0.16, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL 51
L T+ R QN Y+ I + D+ LA NA+ +NEP S + K A I +
Sbjct: 57 LKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIF 107
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
SE F+K K+ +PDY I+ P+DL TI + ++ +Y+S KD+ + N++ YN+
Sbjct: 30 SELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNE 89
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
SE F+K K+ +PDY I+ P+DL TI + ++ +Y+S KD+ + N++ YN+
Sbjct: 30 SELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNE 89
Score = 38.5 bits (88), Expect = 0.033, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 1415 DLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL 1466
DL T+ R QN Y+ I + D+ LA NA+ +NEP S + K A I +
Sbjct: 54 DLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIF 105
Score = 36.2 bits (82), Expect = 0.17, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL 51
L T+ R QN Y+ I + D+ LA NA+ +NEP S + K A I +
Sbjct: 55 LKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIF 105
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 50/200 (25%), Positives = 76/200 (38%), Gaps = 35/200 (17%)
Query: 601 KTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD-SPLGILEV 659
K+ F E F +R ++P G A+ GD + +Y +GVD + G+ E
Sbjct: 183 KSTFGEHTKFVHSVR----------YNPDGSLFASTGGDGTIVLY--NGVDGTKTGVFED 230
Query: 660 EE-----HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 714
+ HS V + WS + S S D T I W L + +P
Sbjct: 231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI-------WNVATLKVEKTIPVGTRI 283
Query: 715 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774
D+ + W + + +I+ N I + G + QV GH + L S
Sbjct: 284 EDQQ------LGIIW---TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334
Query: 775 FDSRVLLSAGHDGLIIIWDI 794
D + L SA +G I WDI
Sbjct: 335 -DGKTLFSADAEGHINSWDI 353
Score = 38.1 bits (87), Expect = 0.045, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 25/175 (14%)
Query: 522 SDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNYL 579
S +A+ N +A G D + ++ L +++ + +V H IT V F N +L
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFS----NNGAFL 506
Query: 580 ASTSTDGCIGFWKYKLDIDISKT---VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636
+T + + + +++ T FH A + C S+SP + LATG
Sbjct: 507 VATDQSRKVIPYSVANNFELAHTNSWTFH------------TAKVACVSWSPDNVRLATG 554
Query: 637 SGDHHVRVYKMDG-VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 690
S D+ V V+ M+ D P+ I++ V+S+ W + VS +D W
Sbjct: 555 SLDNSVIVWNMNKPSDHPI-IIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFW 607
Score = 37.4 bits (85), Expect = 0.091, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 763 HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW 822
HT V + +P D + S G DG I++++ + + G ++ G++F W
Sbjct: 189 HTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247
Query: 823 SPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853
SPDGT A + + ++ + K + IP
Sbjct: 248 SPDGTKIASASADKTIKIWNVATLKVEKTIP 278
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR-------GCSGEISDIAID 527
H V V ++ G + + D I L+ DG SG + +
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 528 NRNILLAAGTVDKTIRIWNLQTLA-----PISVLVGHQ--GII-TGVNFCPLEVNGF 576
+A+ + DKTI+IWN+ TL P+ + Q GII T + NGF
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 305
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 137 PFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
PF KPVD L DY I+ PMD+ TI+ +L Y +F DV+ +F N YN
Sbjct: 45 PFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYN 103
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 1552 PFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
PF KPVD L DY I+ PMD+ TI+ +L Y +F DV+ +F N YN
Sbjct: 45 PFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYN 103
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 1360 HPRPDEWPQ-GDRDATCEKIITGLEEVMGLSVAEPFLVPVDISQXXXXX--XXXXXXXDL 1416
HP P++ + ++ C I+ + + A PF PVD+ D+
Sbjct: 11 HPAPEKSSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDM 70
Query: 1417 TTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 1474
+T++++ + R YR DVR + +N K+N P +V AR + D+ +R K P+
Sbjct: 71 STIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 59
++T++++ + R YR DVR + +N K+N P +V AR + D+ +R K P+
Sbjct: 70 MSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 137 PFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
PF KPVD L DY I+ PMD+ TI+ +L Y +F DV+ +F N YN
Sbjct: 43 PFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYN 101
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 1552 PFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
PF KPVD L DY I+ PMD+ TI+ +L Y +F DV+ +F N YN
Sbjct: 43 PFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYN 101
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 1360 HPRPDEWPQ-GDRDATCEKIITGLEEVMGLSVAEPFLVPVDISQXXXXX--XXXXXXXDL 1416
HP P++ + ++ C I+ + + A PF PVD+ D+
Sbjct: 9 HPAPEKSSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDM 68
Query: 1417 TTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 1474
+T++++ + R YR DVR + +N K+N P +V AR + D+ +R K P+
Sbjct: 69 STIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 127
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 59
++T++++ + R YR DVR + +N K+N P +V AR + D+ +R K P+
Sbjct: 68 MSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 127
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 491 IVTGADDLLIKLWRARDGKLL-ATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQ 548
+++G+DDL +KLW + L T G + +A + ++ A+G +D+T+++W+L
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 549 TLAP-ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594
P ++ G + + V++ PL Y+ + S D I W Y+
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDK--PYMITASDDLTIKIWDYQ 216
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 491 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549
++T +DDL IK+W + +ATL G +S ++ +G+ D T++IWN T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 37.4 bits (85), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 56/264 (21%)
Query: 563 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI 621
+ G++F P E ++ +T G + W Y+ +++ S V PV + I N
Sbjct: 16 VKGIDFHPTE----PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN--- 68
Query: 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 681
++ GS D +RV+ + + +++ E H D + SI + +SG
Sbjct: 69 ----------WIIVGSDDFRIRVFNYNTGEK---VVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 682 SRDGTALIWYYKCSQWRFIRL-----DMNTCLPHT-KETSDETNKKIKVTMVAWDASDR- 734
S D T +W ++ + W + C+ K+ S + + T+ W
Sbjct: 116 SDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 735 -------------------------WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
++ITA + + IKIWD V L+GH + V
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 770 LESHPFDSRVLLSAGHDGLIIIWD 793
HP +++S DG + IW+
Sbjct: 234 AVFHP-TLPIIISGSEDGTLKIWN 256
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 21/223 (9%)
Query: 491 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-T 549
I+ G+DD I+++ G+ + I IA+ + +G+ D T+++WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPV 608
A GH+ + V F P + + F AS D + W + + T E
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTF---ASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668
+ P P ++ T S D ++++ + + +E H V
Sbjct: 187 VNYVDYYP----------LPDKPYMITASDDLTIKIWDY---QTKSCVATLEGHMSNVSF 233
Query: 669 IQWSHSHLRFVSGSRDGTALIW---YYKCSQWRFIRLDMNTCL 708
+ + +SGS DGT IW YK + + L+ + C+
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 35/236 (14%)
Query: 528 NRNILLAAGTVDKTIRIWNL-------QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA 580
N N L + + D TI +W++ + + ++ GH ++ V + L + F
Sbjct: 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF---G 248
Query: 581 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATGSGD 639
S + D + W + + + SK + + A + C SF+P F LATGS D
Sbjct: 249 SVADDQKLMIWDTR-NNNTSKP--------SHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 640 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWR 698
V ++ + + L + E H D++ +QWS H+ S D +W
Sbjct: 300 KTVALWDLRNL--KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357
Query: 699 FIRLDMNTCLP-----HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749
D P H T+ K++ +W+ ++ W+I +++ + +++W
Sbjct: 358 QSTEDAEDGPPELLFIHGGHTA-------KISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 28/206 (13%)
Query: 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNT-CLPHTKETSDE----------TNKKIKV 724
LR ++G L W + + D +T CL T E T V
Sbjct: 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 234
Query: 725 TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ---VLKGHTNEVFVLESHPFDSRVLL 781
VAW + ++ + ++ IWD N + + + HT EV L +P+ +L
Sbjct: 235 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 782 SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLLV 840
+ D + +WD+ + K + H+ + E +F +WSP + T A + + L V
Sbjct: 295 TGSADKTVALWDLRNLKLK----LHSFESHKDE--IFQVQWSPHNETILASSGTDRRLHV 348
Query: 841 YGLGGFKRPQNI-------PRELFFH 859
+ L Q+ P LF H
Sbjct: 349 WDLSKIGEEQSTEDAEDGPPELLFIH 374
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 474 GHLSAVFCVLFDKLGEVIVTG-ADDLLIKLWRARD---GKLLATLRGCSGEISDIAID-N 528
GH + V V + L E + ADD + +W R+ K T+ + E++ ++ +
Sbjct: 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 288
Query: 529 RNILLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587
+LA G+ DKT+ +W+L+ L + H+ I V + P + LAS+ TD
Sbjct: 289 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP---HNETILASSGTDRR 345
Query: 588 IGFW 591
+ W
Sbjct: 346 LHVW 349
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 632 FLATGSGDHHVRVYKMDGVDSPLGILEVEE----HSDKVDSIQWSHSHLR-FVSGSRDGT 686
+L + S DH + ++ ++ +++ + H+ V+ + W H F S + D
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 687 ALIWYYKCSQWRFIRLDMNTCLP-HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745
+IW + + NT P HT + +V ++++ +++ + +
Sbjct: 256 LMIWDTR---------NNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSADKT 301
Query: 746 IKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794
+ +WD N L + + H +E+F ++ P + +L S+G D + +WD+
Sbjct: 302 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 37/254 (14%)
Query: 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615
L GHQ G+++ P +NG YL S S D I W DI+ T V+ + I
Sbjct: 177 LRGHQKEGYGLSWNP-NLNG--YLLSASDDHTICLW------DINATPKEHRVIDAKNIF 227
Query: 616 PGNA--------HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667
G+ H+L S + + D + ++ ++ V+ H+ +V+
Sbjct: 228 TGHTAVVEDVAWHLLHESL------FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281
Query: 668 SIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726
+ ++ +S +GS D T +W R ++L +++ H E T+
Sbjct: 282 CLSFNPYSEFILATGSADKTVALW-----DLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336
Query: 727 VAWDASDR----WVITAINFNFQIKIWDAFNG--DLVQVLKGHTNEVFVLESHPFDSRVL 780
+A +DR W ++ I + DA +G +L+ + GHT ++ +P + ++
Sbjct: 337 LASSGTDRRLHVWDLSKIGEEQSTE--DAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 394
Query: 781 LSAGHDGLIIIWDI 794
S D ++ +W +
Sbjct: 395 CSVSEDNIMQVWQM 408
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 30/189 (15%)
Query: 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNY 578
I D +D LA + DKTI+I+ ++ T I L GH+G + V++ +
Sbjct: 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI-- 69
Query: 579 LASTSTDGCIGFWKYKLD--IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636
LAS S DG + WK + I+ H + + + P L L +A+
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--------LLVASS 121
Query: 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-------------RFVSGSR 683
G V +K +G SP+ I + H+ V+S W+ + + +FV+G
Sbjct: 122 DGKVSVVEFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 684 DGTALIWYY 692
D IW Y
Sbjct: 179 DNLVKIWKY 187
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 756 LVQVLKGHTNEVFVLE-SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE 814
L+ L GH V+ ++ +HP +L S +DG ++IW K+ +W V
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW-----KEENGRWSQIAVHAVHS 99
Query: 815 GALFDGKWSP 824
++ +W+P
Sbjct: 100 ASVNSVQWAP 109
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 491 IVTGADDLLIKLWR----ARDGKLLATLRGCSGEISDIAIDNRNIL---LAAGTVDKTIR 543
VTG D L+K+W+ A+ L +TL G S + D+A +L LA+ + D+T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 544 IW 545
IW
Sbjct: 233 IW 234
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 35/236 (14%)
Query: 528 NRNILLAAGTVDKTIRIWNL-------QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA 580
N N L + + D TI +W++ + + ++ GH ++ V + L + F
Sbjct: 194 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF---G 250
Query: 581 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATGSGD 639
S + D + W + + + SK + + A + C SF+P F LATGS D
Sbjct: 251 SVADDQKLMIWDTR-NNNTSKP--------SHTVDAHTAEVNCLSFNPYSEFILATGSAD 301
Query: 640 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWR 698
V ++ + + L + E H D++ +QWS H+ S D +W
Sbjct: 302 KTVALWDLRNL--KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 359
Query: 699 FIRLDMNTCLP-----HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749
D P H T+ K++ +W+ ++ W+I +++ + +++W
Sbjct: 360 QSTEDAEDGPPELLFIHGGHTA-------KISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 28/206 (13%)
Query: 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNT-CLPHTKETSDE----------TNKKIKV 724
LR ++G L W + + D +T CL T E T V
Sbjct: 177 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 236
Query: 725 TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ---VLKGHTNEVFVLESHPFDSRVLL 781
VAW + ++ + ++ IWD N + + + HT EV L +P+ +L
Sbjct: 237 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 296
Query: 782 SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLLV 840
+ D + +WD+ + K + H+ + E +F +WSP + T A + + L V
Sbjct: 297 TGSADKTVALWDLRNLKLK----LHSFESHKDE--IFQVQWSPHNETILASSGTDRRLHV 350
Query: 841 YGLGGFKRPQNI-------PRELFFH 859
+ L Q+ P LF H
Sbjct: 351 WDLSKIGEEQSTEDAEDGPPELLFIH 376
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 474 GHLSAVFCVLFDKLGEVIVTG-ADDLLIKLWRARD---GKLLATLRGCSGEISDIAID-N 528
GH + V V + L E + ADD + +W R+ K T+ + E++ ++ +
Sbjct: 231 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 290
Query: 529 RNILLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587
+LA G+ DKT+ +W+L+ L + H+ I V + P + LAS+ TD
Sbjct: 291 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP---HNETILASSGTDRR 347
Query: 588 IGFW 591
+ W
Sbjct: 348 LHVW 351
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 632 FLATGSGDHHVRVYKMDGVDSPLGILEVEE----HSDKVDSIQWSHSHLR-FVSGSRDGT 686
+L + S DH + ++ ++ +++ + H+ V+ + W H F S + D
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 687 ALIWYYKCSQWRFIRLDMNTCLP-HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745
+IW + + NT P HT + +V ++++ +++ + +
Sbjct: 258 LMIWDTR---------NNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSADKT 303
Query: 746 IKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794
+ +WD N L + + H +E+F ++ P + +L S+G D + +WD+
Sbjct: 304 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 37/254 (14%)
Query: 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615
L GHQ G+++ P +NG YL S S D I W DI+ T V+ + I
Sbjct: 179 LRGHQKEGYGLSWNP-NLNG--YLLSASDDHTICLW------DINATPKEHRVIDAKNIF 229
Query: 616 PGNA--------HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667
G+ H+L S + + D + ++ ++ V+ H+ +V+
Sbjct: 230 TGHTAVVEDVAWHLLHESL------FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 283
Query: 668 SIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726
+ ++ +S +GS D T +W R ++L +++ H E T+
Sbjct: 284 CLSFNPYSEFILATGSADKTVALW-----DLRNLKLKLHSFESHKDEIFQVQWSPHNETI 338
Query: 727 VAWDASDR----WVITAINFNFQIKIWDAFNG--DLVQVLKGHTNEVFVLESHPFDSRVL 780
+A +DR W ++ I + DA +G +L+ + GHT ++ +P + ++
Sbjct: 339 LASSGTDRRLHVWDLSKIGEEQSTE--DAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 396
Query: 781 LSAGHDGLIIIWDI 794
S D ++ +W +
Sbjct: 397 CSVSEDNIMQVWQM 410
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 491 IVTGADDLLIKLWRARDG-KLLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQ 548
+++G+DDL +KLW + L T G + +A + ++ A+G +D+T+++W+L
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 549 TLAP-ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594
P ++ G + + V++ PL Y+ + S D I W Y+
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDK--PYMITASDDLTIKIWDYQ 216
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 491 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549
++T +DDL IK+W + +ATL G +S ++ +G+ D T++IWN T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 56/264 (21%)
Query: 563 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI 621
+ G++F P E ++ +T G + W Y+ +++ S V PV + I N
Sbjct: 16 VKGIDFHPTE----PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN--- 68
Query: 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 681
++ GS D +RV+ + + +++ E H D + SI + +SG
Sbjct: 69 ----------WIIVGSDDFRIRVFNYNTGEK---VVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 682 SRDGTALIWYYKCSQWRFIRL-----DMNTCLPHT-KETSDETNKKIKVTMVAWDASDR- 734
S D T +W ++ + W + C+ K+ S + + T+ W
Sbjct: 116 SDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 735 -------------------------WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
++ITA + + IKIWD V L+GH + V
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 770 LESHPFDSRVLLSAGHDGLIIIWD 793
HP +++S DG + IW+
Sbjct: 234 AVFHP-TLPIIISGSEDGTLKIWN 256
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 87/224 (38%), Gaps = 21/224 (9%)
Query: 491 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-T 549
I+ G+DD I+++ G+ + I IA+ + +G+ D T+++WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPV 608
A GH+ + V F P + + F AS D + W + + T E
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTF---ASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668
+ P P ++ T S D ++++ + + +E H V
Sbjct: 187 VNYVDYYP----------LPDKPYMITASDDLTIKIWDY---QTKSCVATLEGHMSNVSF 233
Query: 669 IQWSHSHLRFVSGSRDGTALIW---YYKCSQWRFIRLDMNTCLP 709
+ + +SGS DGT IW YK + + L+ + C+
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
SEPF + VDK + P+Y +IV +P L +++ L Y DF+ D VF N+ +N
Sbjct: 175 SEPFXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFN- 233
Query: 195 NKRSKIYIMTTRLSEF 210
+ + IY T L+ +
Sbjct: 234 DPSALIYKDATTLTNY 249
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
SEPF + VDK + P+Y +IV +P L +++ L Y DF+ D VF N+ +N
Sbjct: 175 SEPFXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFN- 233
Query: 1610 NKRSKIYIMTTRLSEF 1625
+ + IY T L+ +
Sbjct: 234 DPSALIYKDATTLTNY 249
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
SEPF + VDK + P+Y +IV +P L +++ L Y DF+ D VF N+ +N
Sbjct: 181 SEPFXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFN- 239
Query: 195 NKRSKIYIMTTRLSEF 210
+ + IY T L+ +
Sbjct: 240 DPSALIYKDATTLTNY 255
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
SEPF + VDK + P+Y +IV +P L +++ L Y DF+ D VF N+ +N
Sbjct: 181 SEPFXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFN- 239
Query: 1610 NKRSKIYIMTTRLSEF 1625
+ + IY T L+ +
Sbjct: 240 DPSALIYKDATTLTNY 255
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 102/251 (40%), Gaps = 36/251 (14%)
Query: 514 LRGCSGEISDIAID-NRNILLAAGTVDKTIRIWNL-------QTLAPISVLVGHQGIITG 565
LRG E ++ + N N L + + D TI +W++ + + ++ GH ++
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 566 VNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625
V + L + F S + D + W D +P + + A + C S
Sbjct: 241 VAWHLLHESLF---GSVADDQKLMIW------DTRNNNTSKP---SHTVDAHTAEVNCLS 288
Query: 626 FSPGGLF-LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSR 683
F+P F LATGS D V ++ + + L + E H D++ +QWS H+ S
Sbjct: 289 FNPYSEFILATGSADKTVALWDLRNL--KLKLHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 684 DGTALIWYYKCSQWRFIRLDMNTCLP-----HTKETSDETNKKIKVTMVAWDASDRWVIT 738
D +W D P H T+ K++ +W+ ++ W+I
Sbjct: 347 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-------KISDFSWNPNEPWIIC 399
Query: 739 AINFNFQIKIW 749
+++ + +++W
Sbjct: 400 SVSEDNIMQVW 410
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 28/206 (13%)
Query: 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNT-CLPHTKETSDE----------TNKKIKV 724
LR ++G L W + + D +T CL T E T V
Sbjct: 179 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 238
Query: 725 TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ---VLKGHTNEVFVLESHPFDSRVLL 781
VAW + ++ + ++ IWD N + + + HT EV L +P+ +L
Sbjct: 239 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 298
Query: 782 SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLLV 840
+ D + +WD+ + K + H+ + E +F +WSP + T A + + L V
Sbjct: 299 TGSADKTVALWDLRNLKLK----LHSFESHKDE--IFQVQWSPHNETILASSGTDRRLHV 352
Query: 841 YGLGGFKRPQNI-------PRELFFH 859
+ L Q+ P LF H
Sbjct: 353 WDLSKIGEEQSTEDAEDGPPELLFIH 378
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 474 GHLSAVFCVLFDKLGEVIVTG-ADDLLIKLWRARD---GKLLATLRGCSGEISDIAID-N 528
GH + V V + L E + ADD + +W R+ K T+ + E++ ++ +
Sbjct: 233 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 292
Query: 529 RNILLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587
+LA G+ DKT+ +W+L+ L + H+ I V + P + LAS+ TD
Sbjct: 293 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP---HNETILASSGTDRR 349
Query: 588 IGFW 591
+ W
Sbjct: 350 LHVW 353
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 632 FLATGSGDHHVRVYKMDGVDSPLGILEVEE----HSDKVDSIQWSHSHLR-FVSGSRDGT 686
+L + S DH + ++ ++ +++ + H+ V+ + W H F S + D
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 687 ALIWYYKCSQWRFIRLDMNTCLP-HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745
+IW + + NT P HT + +V ++++ +++ + +
Sbjct: 260 LMIWDTR---------NNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSADKT 305
Query: 746 IKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794
+ +WD N L + + H +E+F ++ P + +L S+G D + +WD+
Sbjct: 306 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 37/254 (14%)
Query: 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615
L GHQ G+++ P +NG YL S S D I W DI+ T V+ + I
Sbjct: 181 LRGHQKEGYGLSWNP-NLNG--YLLSASDDHTICLW------DINATPKEHRVIDAKNIF 231
Query: 616 PGNA--------HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667
G+ H+L S + + D + ++ ++ V+ H+ +V+
Sbjct: 232 TGHTAVVEDVAWHLLHESL------FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 285
Query: 668 SIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726
+ ++ +S +GS D T +W R ++L +++ H E T+
Sbjct: 286 CLSFNPYSEFILATGSADKTVALW-----DLRNLKLKLHSFESHKDEIFQVQWSPHNETI 340
Query: 727 VAWDASDR----WVITAINFNFQIKIWDAFNG--DLVQVLKGHTNEVFVLESHPFDSRVL 780
+A +DR W ++ I + DA +G +L+ + GHT ++ +P + ++
Sbjct: 341 LASSGTDRRLHVWDLSKIGEEQSTE--DAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 398
Query: 781 LSAGHDGLIIIWDI 794
S D ++ +W +
Sbjct: 399 CSVSEDNIMQVWQM 412
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
+F +K+WD +++ H++EV + + P + LS G DG I++WD
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 533 LAAGTVDKTIRIWNL-------QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 585
L + + D TI +W++ + + ++ GH ++ V++ L + F S + D
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLF---GSVADD 249
Query: 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATGSGDHHVRV 644
+ W + + + SK + + A + C SF+P F LATGS D V +
Sbjct: 250 QKLMIWDTRSN-NTSKP--------SHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 645 YKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLD 703
+ + + L + E H D++ +QWS H+ S D + + W ++
Sbjct: 301 WDLRNL--KLKLHSFESHKDEIFQVQWSPHNETILASSGTD-------RRLNVWDLSKIG 351
Query: 704 MNTCLPHTKETSDE-----TNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749
++ E K++ +W+ ++ WVI +++ + +++W
Sbjct: 352 EEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
Query: 474 GHLSAVFCVLFDKLGEVIVTG-ADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRN-- 530
GH + V V + L E + ADD + +W R +++ + N
Sbjct: 225 GHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPY 284
Query: 531 --ILLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587
+LA G+ DKT+ +W+L+ L + H+ I V + P + LAS+ TD
Sbjct: 285 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP---HNETILASSGTDRR 341
Query: 588 IGFW 591
+ W
Sbjct: 342 LNVW 345
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 75/169 (44%), Gaps = 21/169 (12%)
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEE----HSDKVDSIQWSHSHLR-FVSGSRDGTA 687
L + S DH + ++ + V +++ + H+ V+ + W H F S + D
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 688 LIWYYKCSQWRFIRLDMNTCLP-HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746
+IW + + NT P H+ + +V ++++ +++ + + +
Sbjct: 253 MIWDTRSN---------NTSKPSHSVDA-----HTAEVNCLSFNPYSEFILATGSADKTV 298
Query: 747 KIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794
+WD N L + + H +E+F ++ P + +L S+G D + +WD+
Sbjct: 299 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 760 LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFD 819
L+GH E + L +P S LLSA D I +WDI + + EG + D
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPK--------------EGKVVD 218
Query: 820 GKWSPDGTTCALTDSYGHLLVYGLGG 845
K G T + D HLL L G
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFG 244
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/259 (18%), Positives = 103/259 (39%), Gaps = 47/259 (18%)
Query: 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-----DIDISKTVFHEPVMF 610
L GHQ G+++ P N +L S S D I W + +KT+F
Sbjct: 173 LRGHQKEGYGLSWNP---NLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAV 229
Query: 611 NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670
E + + H+L S + + D + ++ ++ V+ H+ +V+ +
Sbjct: 230 VEDV---SWHLLHESL------FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLS 280
Query: 671 WS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729
++ +S +GS D T +W R ++L +++ H E + V W
Sbjct: 281 FNPYSEFILATGSADKTVALW-----DLRNLKLKLHSFESHKDE----------IFQVQW 325
Query: 730 DASDRWVITAINFNFQIKIWD------------AFNG--DLVQVLKGHTNEVFVLESHPF 775
+ ++ + + ++ +WD A +G +L+ + GHT ++ +P
Sbjct: 326 SPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385
Query: 776 DSRVLLSAGHDGLIIIWDI 794
+ V+ S D ++ +W +
Sbjct: 386 EPWVICSVSEDNIMQVWQM 404
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 26/194 (13%)
Query: 677 RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 736
+S S D T +W +D T T V V+W +
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIF---------TGHTAVVEDVSWHLLHESL 242
Query: 737 ITAINFNFQIKIWDAFNGDLVQ---VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
++ + ++ IWD + + + + HT EV L +P+ +L + D + +WD
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 794 ILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLLVYGL---GGFKRP 849
+ + K + H+ + E +F +WSP + T A + + L V+ L G + P
Sbjct: 303 LRNLKLK----LHSFESHKDE--IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSP 356
Query: 850 QNI----PRELFFH 859
++ P LF H
Sbjct: 357 EDAEDGPPELLFIH 370
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH + V ++K G+++ + + D +W + +G+ L TL G +G I I +D
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 534 AAGTVDKTIRIWNL 547
G+ D +I++W++
Sbjct: 90 VTGSADYSIKLWDV 103
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR 515
GH ++ + D + VTG+ D IKLW +G+ +AT +
Sbjct: 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK 113
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 30/189 (15%)
Query: 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNY 578
I D +D LA + DKTI+I+ ++ T I L GH+G + V++ +
Sbjct: 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG--TI 71
Query: 579 LASTSTDGCIGFWKYKLD--IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636
LAS S DG + WK + I+ H + + + P + P L +A+
Sbjct: 72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-------HEYGPL-LLVASS 123
Query: 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-------------RFVSGSR 683
G V +K +G SP+ I + H+ V+S W+ + + +FV+G
Sbjct: 124 DGKVSVVEFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180
Query: 684 DGTALIWYY 692
D IW Y
Sbjct: 181 DNLVKIWKY 189
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 756 LVQVLKGHTNEVFVLE-SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE 814
L+ L GH V+ ++ +HP +L S +DG ++IW K+ +W V
Sbjct: 47 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW-----KEENGRWSQIAVHAVHS 101
Query: 815 GALFDGKWSP 824
++ +W+P
Sbjct: 102 ASVNSVQWAP 111
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 633 LATGSGDHHVRVYKMDGVD------SPLGILEVEEHSDKVDSIQWSHS--HLRFVSGSRD 684
LA+G + + ++ M+ +PL + D+V S+ W+ S H+ F S
Sbjct: 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHV-FASAGSS 187
Query: 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI---TAIN 741
A IW K + + H TS + K ++++V W + + T +
Sbjct: 188 NFASIWDLKAKKE----------VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237
Query: 742 FNFQIKIWDAFNGD--LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799
+ I IWD N + L + +GH + L+ D +LLS+G D +++W+ S++Q
Sbjct: 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 138 FRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
F K VD K + PDY ++ P I+ +L+ Y P +FVKDV+ +F N YN
Sbjct: 42 FEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYN 99
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1553 FRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
F K VD K + PDY ++ P I+ +L+ Y P +FVKDV+ +F N YN
Sbjct: 42 FEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYN 99
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 30/189 (15%)
Query: 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNY 578
I D +D LA + DKTI+I+ ++ T I L GH+G + V++ +
Sbjct: 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG--TI 69
Query: 579 LASTSTDGCIGFWKYKLD--IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636
LAS S DG + WK + I+ H + + + P + P L +A+
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-------HEYGPL-LLVASS 121
Query: 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-------------RFVSGSR 683
G V +K +G SP+ I + H+ V+S W+ + + +FV+G
Sbjct: 122 DGKVSVVEFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 684 DGTALIWYY 692
D IW Y
Sbjct: 179 DNLVKIWKY 187
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 756 LVQVLKGHTNEVFVLE-SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE 814
L+ L GH V+ ++ +HP +L S +DG ++IW K+ +W V
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW-----KEENGRWSQIAVHAVHS 99
Query: 815 GALFDGKWSP 824
++ +W+P
Sbjct: 100 ASVNSVQWAP 109
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 30/189 (15%)
Query: 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNY 578
I D +D +A + DKTI+I+ ++ T I L GH+G + V++ +
Sbjct: 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG--TI 69
Query: 579 LASTSTDGCIGFWKYKLD--IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636
LAS S DG + WK + I+ H + + + P + P L +A+
Sbjct: 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-------HEYGPM-LLVASS 121
Query: 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-------------RFVSGSR 683
G V +K +G SP+ I + H+ V+S W+ + + +FV+G
Sbjct: 122 DGKVSVVEFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 684 DGTALIWYY 692
D IW Y
Sbjct: 179 DNLVKIWKY 187
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 756 LVQVLKGHTNEVFVLE-SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE 814
L+ L GH V+ ++ +HP +L S +DG ++IW K+ +W V
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW-----KEENGRWSQIAVHAVHS 99
Query: 815 GALFDGKWSP 824
++ +W+P
Sbjct: 100 ASVNSVQWAP 109
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 138 FRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196
F KPV DY +++ PMDL T+ ++ NY + DF+KD+ + N+ YN +K
Sbjct: 33 FSKPVS-----DYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDK 86
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 1553 FRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611
F KPV DY +++ PMDL T+ ++ NY + DF+KD+ + N+ YN +K
Sbjct: 33 FSKPVS-----DYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDK 86
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 138 FRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
F PV P Y I+ PMD GT+++++ + Y+S +F D K + N+ YN+
Sbjct: 34 FAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNR 90
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 1553 FRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
F PV P Y I+ PMD GT+++++ + Y+S +F D K + N+ YN+
Sbjct: 34 FAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNR 90
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 491 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549
++T +DDL IK+W + +ATL G +S ++ +G+ D T++IWN T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 56/264 (21%)
Query: 563 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI 621
+ G++F P E ++ +T G + W Y+ +++ S V PV + I N
Sbjct: 16 VKGIDFHPTE----PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN--- 68
Query: 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 681
++ GS D +RV+ + + +++ E H D + SI + +SG
Sbjct: 69 ----------WIIVGSDDFRIRVFNYNTGEK---VVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 682 SRDGTALIWYYKCSQWRFIRL-----DMNTCLPHT-KETSDETNKKIKVTMVAWDASDR- 734
S D T +W ++ + W + C+ K+ S + + T+ W
Sbjct: 116 SDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 735 -------------------------WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
++ITA + + IKIWD V L+GH + V
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 770 LESHPFDSRVLLSAGHDGLIIIWD 793
HP +++S DG + IW+
Sbjct: 234 AVFHP-TLPIIISGSEDGTLKIWN 256
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 21/223 (9%)
Query: 491 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-T 549
I+ G+DD I+++ G+ + I IA+ + +G+ D T+++WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPV 608
A GH+ + V F P + + F AS D + W + + T E
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTF---ASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668
+ P P ++ T S D ++++ + + +E H V
Sbjct: 187 VNYVDYYP----------LPDKPYMITASDDLTIKIWDY---QTKSCVATLEGHMSNVSF 233
Query: 669 IQWSHSHLRFVSGSRDGTALIW---YYKCSQWRFIRLDMNTCL 708
+ + +SGS DGT IW YK + + L+ + C+
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 474 GHLSAVFCVLFD-KLGEVIVTGADDLLIKLWRARDGKLLATL-----RGCSGEISDIAID 527
GH V CV F+ K +G D +K+W TL RG + + +
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN-YVDYYPLP 196
Query: 528 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587
++ ++ A D TI+IW+ QT + ++ L GH ++ F P + S S DG
Sbjct: 197 DKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT----LPIIISGSEDGT 251
Query: 588 IGFW 591
+ W
Sbjct: 252 LKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 491 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549
++T +DDL IK+W + +ATL G +S ++ +G+ D T++IWN T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 56/264 (21%)
Query: 563 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI 621
+ G++F P E ++ +T G + W Y+ +++ S V PV + I N
Sbjct: 16 VKGIDFHPTE----PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN--- 68
Query: 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 681
++ GS D +RV+ + + +++ E H D + SI + +SG
Sbjct: 69 ----------WIIVGSDDFRIRVFNYNTGEK---VVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 682 SRDGTALIWYYKCSQWRFIRL-----DMNTCLPHT-KETSDETNKKIKVTMVAWDASDR- 734
S D T +W ++ + W + C+ K+ S + + T+ W
Sbjct: 116 SDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 735 -------------------------WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769
++ITA + + IKIWD V L+GH + V
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 770 LESHPFDSRVLLSAGHDGLIIIWD 793
HP +++S DG + IW+
Sbjct: 234 AVFHP-TLPIIISGSEDGTLKIWN 256
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 21/223 (9%)
Query: 491 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-T 549
I+ G+DD I+++ G+ + I IA+ + +G+ D T+++WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPV 608
A GH+ + V F P + + F AS D + W + + T E
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTF---ASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668
+ P P ++ T S D ++++ + + +E H V
Sbjct: 187 VNYVDYYP----------LPDKPYMITASDDLTIKIWDY---QTKSCVATLEGHMSNVSF 233
Query: 669 IQWSHSHLRFVSGSRDGTALIW---YYKCSQWRFIRLDMNTCL 708
+ + +SGS DGT IW YK + + L+ + C+
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 474 GHLSAVFCVLFD-KLGEVIVTGADDLLIKLWRARDGKLLATL-----RGCSGEISDIAID 527
GH V CV F+ K +G D +K+W TL RG + + +
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN-YVDYYPLP 196
Query: 528 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587
++ ++ A D TI+IW+ QT + ++ L GH ++ F P + S S DG
Sbjct: 197 DKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT----LPIIISGSEDGT 251
Query: 588 IGFW 591
+ W
Sbjct: 252 LKIW 255
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 30/189 (15%)
Query: 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNY 578
I D D A + DKTI+I+ ++ T I L GH+G + V++ +
Sbjct: 12 IHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG--TI 69
Query: 579 LASTSTDGCIGFWKYKLD--IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636
LAS S DG + WK + I+ H + + + P + P L +A+
Sbjct: 70 LASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP-------HEYGPX-LLVASS 121
Query: 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-------------RFVSGSR 683
G V +K +G SP+ I + H+ V+S W+ + + +FV+G
Sbjct: 122 DGKVSVVEFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 684 DGTALIWYY 692
D IW Y
Sbjct: 179 DNLVKIWKY 187
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
+EPF K +PDY + + P+ L IR +L+ YE+ D+ +F N++ YN
Sbjct: 41 AEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNV 100
Query: 195 NKRSKIYIMTTRLSEFAEEHLRRLTVR 221
S IY +L + + + L R
Sbjct: 101 -PNSAIYKRVLKLQQVMQAKKKELARR 126
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
+EPF K +PDY + + P+ L IR +L+ YE+ D+ +F N++ YN
Sbjct: 41 AEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNV 100
Query: 1610 NKRSKIYIMTTRLSEFAEEHLRRLTVR 1636
S IY +L + + + L R
Sbjct: 101 -PNSAIYKRVLKLQQVMQAKKKELARR 126
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 138 FRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196
F KPVD + PDY ++ PMDL ++ ++ Y + D+++D+ + N+ YN ++
Sbjct: 31 FTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDR 89
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 1553 FRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611
F KPVD + PDY ++ PMDL ++ ++ Y + D+++D+ + N+ YN ++
Sbjct: 31 FTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDR 89
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 137 PFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
PF KPVD L DY I+ P D TI+ +L Y +F DV+ F N YN
Sbjct: 30 PFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYKYN 88
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 1552 PFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
PF KPVD L DY I+ P D TI+ +L Y +F DV+ F N YN
Sbjct: 30 PFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYKYN 88
Score = 37.4 bits (85), Expect = 0.079, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 1391 AEPFLVPVDISQXXXXX--XXXXXXXDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKF 1448
A PF PVD+ D +T++++ ++R YR DVR +N K+
Sbjct: 28 AWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYKY 87
Query: 1449 NEPHSNIVKYARIITDLL-LRIIKEPN 1474
N P +V AR + D+ R K P+
Sbjct: 88 NPPDHEVVAXARKLQDVFEXRFAKXPD 114
Score = 34.7 bits (78), Expect = 0.60, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 2 TTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLL-LRIIKEPN 59
+T++++ ++R YR DVR +N K+N P +V AR + D+ R K P+
Sbjct: 56 STIKSKLESREYRDAQEFGADVRLXFSNCYKYNPPDHEVVAXARKLQDVFEXRFAKXPD 114
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 38.9 bits (89), Expect = 0.026, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 123 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
R VL+ L + F +PV + PDY + PMD T+R+ L Y++ +F +D
Sbjct: 19 RSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDF 78
Query: 183 KRVFHNSRNYN 193
+ N YN
Sbjct: 79 DLIIDNCMKYN 89
Score = 38.9 bits (89), Expect = 0.026, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 1538 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
R VL+ L + F +PV + PDY + PMD T+R+ L Y++ +F +D
Sbjct: 19 RSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDF 78
Query: 1598 KRVFHNSRNYN 1608
+ N YN
Sbjct: 79 DLIIDNCMKYN 89
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 93/231 (40%), Gaps = 35/231 (15%)
Query: 533 LAAGTVDKTIRIWNL-------QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 585
L + + D T+ +W++ + + ++ GH ++ V + L + F S + D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF---GSVADD 251
Query: 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATGSGDHHVRV 644
+ W D +P + + A + C SF+P F LATGS D V +
Sbjct: 252 QKLMIW------DTRSNTTSKP---SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 645 YKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLD 703
+ + + L + E H D++ + WS H+ S D + + W ++
Sbjct: 303 WDLRNL--KLKLHTFESHKDEIFQVHWSPHNETILASSGTD-------RRLNVWDLSKIG 353
Query: 704 MNTCLPHTKETSDET-----NKKIKVTMVAWDASDRWVITAINFNFQIKIW 749
++ E K++ +W+ ++ WVI +++ + ++IW
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 474 GHLSAVFCVLFDKLGEVIVTG-ADDLLIKLWRARD---GKLLATLRGCSGEISDIAID-N 528
GH + V V + L E + ADD + +W R K + + E++ ++ +
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 529 RNILLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587
+LA G+ DKT+ +W+L+ L + H+ I V++ P + LAS+ TD
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP---HNETILASSGTDRR 343
Query: 588 IGFW 591
+ W
Sbjct: 344 LNVW 347
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 760 LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFD 819
L+GH E + L + S LLSA D + +WDI + G EG + D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINA--------------GPKEGKIVD 220
Query: 820 GKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEV 879
K G + + D HLL L F + + + + T T ++P+ L + EV
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESL--FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEV 278
Query: 880 TNL 882
L
Sbjct: 279 NCL 281
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 17/153 (11%)
Query: 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ---VLKGHTNEVFVLESHP 774
T V VAW + ++ + ++ IWD + + ++ HT EV L +P
Sbjct: 226 TGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP 285
Query: 775 FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTD 833
+ +L + D + +WD+ + K + H + E +F WSP + T A +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLK----LHTFESHKDE--IFQVHWSPHNETILASSG 339
Query: 834 SYGHLLVYGLGGFKRPQNI-------PRELFFH 859
+ L V+ L Q+ P LF H
Sbjct: 340 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 633 LATGSGDHHVRVYKMDGVDSPLGILEVEE----HSDKVDSIQWSHSHLR-FVSGSRDGTA 687
L + S DH V ++ ++ I++ + HS V+ + W H F S + D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747
+IW + + + HT E V ++++ +++ + + +
Sbjct: 255 MIWDTRSNT---TSKPSHLVDAHTAE----------VNCLSFNPYSEFILATGSADKTVA 301
Query: 748 IWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794
+WD N L + + H +E+F + P + +L S+G D + +WD+
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 659 VEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717
V+ H+ +V+ + ++ +S +GS D T +W R ++L ++T H E
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALW-----DLRNLKLKLHTFESHKDEIFQV 325
Query: 718 TNKKIKVTMVAWDASDR----WVITAINFNFQIKIWDAFNG--DLVQVLKGHTNEVFVLE 771
T++A +DR W ++ I + DA +G +L+ + GHT ++
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSKIGEEQSAE--DAEDGPPELLFIHGGHTAKISDFS 383
Query: 772 SHPFDSRVLLSAGHDGLIIIWDI 794
+P + V+ S D ++ IW +
Sbjct: 384 WNPNEPWVICSVSEDNIMQIWQM 406
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 35/231 (15%)
Query: 533 LAAGTVDKTIRIWNL-------QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 585
L + + D T+ +W++ + + ++ GH ++ V + L + F S + D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF---GSVADD 251
Query: 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATGSGDHHVRV 644
+ W D +P + A + C SF+P F LATGS D V +
Sbjct: 252 QKLXIW------DTRSNTTSKPSHL---VDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 645 YKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLD 703
+ + + L + E H D++ + WS H+ S D + + W ++
Sbjct: 303 WDLRNL--KLKLHTFESHKDEIFQVHWSPHNETILASSGTD-------RRLNVWDLSKIG 353
Query: 704 MNTCLPHTKETSDE-----TNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749
++ E K++ +W+ ++ WVI +++ + +IW
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 474 GHLSAVFCVLFDKLGEVIVTG-ADDLLIKLWRARD---GKLLATLRGCSGEISDIAID-N 528
GH + V V + L E + ADD + +W R K + + E++ ++ +
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 529 RNILLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587
+LA G+ DKT+ +W+L+ L + H+ I V++ P + LAS+ TD
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP---HNETILASSGTDRR 343
Query: 588 IGFW 591
+ W
Sbjct: 344 LNVW 347
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 17/153 (11%)
Query: 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ---VLKGHTNEVFVLESHP 774
T V VAW + ++ + ++ IWD + + ++ HT EV L +P
Sbjct: 226 TGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP 285
Query: 775 FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTD 833
+ +L + D + +WD+ + K + H + E +F WSP + T A +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLK----LHTFESHKDE--IFQVHWSPHNETILASSG 339
Query: 834 SYGHLLVYGLGGFKRPQNI-------PRELFFH 859
+ L V+ L Q+ P LF H
Sbjct: 340 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Query: 760 LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFD 819
L+GH E + L + S LLSA D + +WDI + G EG + D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINA--------------GPKEGKIVD 220
Query: 820 GKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEV 879
K G + + D HLL L F + + + T T ++P+ L + EV
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESL--FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEV 278
Query: 880 TNL 882
L
Sbjct: 279 NCL 281
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 123 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 182
R+ LE L F +PV + PDY + PMD T+++ L Y + DF +D
Sbjct: 13 RKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDF 72
Query: 183 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRR 217
+ N YN K + Y RL E LR+
Sbjct: 73 NLIVSNCLKYNA-KDTIFYRAAVRLREQGGAVLRQ 106
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 1538 REVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597
R+ LE L F +PV + PDY + PMD T+++ L Y + DF +D
Sbjct: 13 RKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDF 72
Query: 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRR 1632
+ N YN K + Y RL E LR+
Sbjct: 73 NLIVSNCLKYNA-KDTIFYRAAVRLREQGGAVLRQ 106
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
SE F + + + P+Y +++ P+D I+E +R Y S D KDV + HN++ +N
Sbjct: 37 SEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFN 95
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
SE F + + + P+Y +++ P+D I+E +R Y S D KDV + HN++ +N
Sbjct: 37 SEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFN 95
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 528 NRNILLAAGTVDKTIRIWNL-QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586
N+ ++A G D + IW++ Q P+S+L H+ + V+F P + +L + S DG
Sbjct: 247 NQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHP---SNPEHLFTCSEDG 303
Query: 587 CIGFWKYKLDIDISKTVFHE 606
+ W D+ ++FH+
Sbjct: 304 SLWHWDASTDVPEKSSLFHQ 323
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 737 ITAINFNFQIKIWD----AFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 792
I +N Q+KIWD + L G + ++ HP V+ + G DG++ IW
Sbjct: 205 ILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIW 264
Query: 793 DI 794
D+
Sbjct: 265 DV 266
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 746 IKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKW 804
+ IWD G + V +LK H E++ + HP + L + DG + WD +
Sbjct: 261 LSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSL 320
Query: 805 FH 806
FH
Sbjct: 321 FH 322
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 37/193 (19%)
Query: 474 GHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRAR-DGKLLATLRGCSGEISDIAIDNRNI 531
GH + V + + L + ++G+ D ++LW R + + T G G+I+ +
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 532 LLAAGTVDKTIRIWNLQTLAPISVLVGHQ---------------GIITGVNFCPLEVNGF 576
G+ D T R+++++T GHQ I+T V F ++G
Sbjct: 263 RFGTGSDDGTCRLFDMRT--------GHQLQVYNREPDRNDNELPIVTSVAF---SISGR 311
Query: 577 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636
A S C Y D +++ V + + N I C S G L TG
Sbjct: 312 LLFAGYSNGDC-----YVWDTLLAEMVLNLGTLQNSH----EGRISCLGLSSDGSALCTG 362
Query: 637 SGDHHVRVYKMDG 649
S D +++++ G
Sbjct: 363 SWDKNLKIWAFSG 375
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 755 DLV--QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799
DLV + L+GH+ +V+ L+ P + ++SA DG +I+W+ L+S++
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQK 100
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 113/299 (37%), Gaps = 44/299 (14%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 533
GH V+ + + IV+ + D + +W A + ++ + + A +
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123
Query: 534 AAGTVDKTIRIWNLQTLA------PIS-VLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586
A G +D I+NL + A P+S VL GH+G + + P + L + S D
Sbjct: 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET---RLITGSGDQ 180
Query: 587 CIGFWKYKLD--IDISKTVF---HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 641
W I I + F H + + I NA++ S GS D
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS-----------GSCDTT 229
Query: 642 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701
VR++ + + + H ++S+++ RF +GS DGT +
Sbjct: 230 VRLWDLR--ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL------------ 275
Query: 702 LDMNT---CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV 757
DM T + +E N+ VT VA+ S R + + N +WD ++V
Sbjct: 276 FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTLLAEMV 333
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 748 IWDAFNGDLVQVL-----KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGY 802
+WD G + + GHT +V L + ++ + +S D + +WD L R
Sbjct: 184 LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD-LRITSRAV 242
Query: 803 KWFHNIVEGQGEGALFDGKWSPDG 826
+ +H EG + K+ PDG
Sbjct: 243 RTYHG-----HEGDINSVKFFPDG 261
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 35.8 bits (81), Expect = 0.21, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 138 FRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
F PV P Y I+ PMD T++E+++ ++Y+S + + K + N+ YN+
Sbjct: 29 FSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNK 85
Score = 35.8 bits (81), Expect = 0.21, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 1553 FRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
F PV P Y I+ PMD T++E+++ ++Y+S + + K + N+ YN+
Sbjct: 29 FSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNK 85
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192
E F + + + PDY ++V P+DL I+++L+ + Y+ D + +F+N+++Y
Sbjct: 29 CELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSY 86
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607
E F + + + PDY ++V P+DL I+++L+ + Y+ D + +F+N+++Y
Sbjct: 29 CELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSY 86
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680
I C +++ +A +H V +Y+ G + + + E++EH+ +V I W+ R V+
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 681 GSRDGTALIWYYKCSQWR 698
D A +W K W+
Sbjct: 70 CGTDRNAYVWTLKGRTWK 87
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 763 HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGY 802
H + L+ P + R +LS G DG+I+++D+ +S ++ Y
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY 81
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 31/196 (15%)
Query: 612 ERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVD----------SPLGILEVE 660
ERI G + L P G ++ +G D + +Y ++ +G +
Sbjct: 39 ERIHGGGINTL--DIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD 96
Query: 661 EHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETN 719
H V+++QW H F S S D T +W D NT +ET
Sbjct: 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVW------------DTNTLQTADVFNFEETV 144
Query: 720 KKIKVTMVAWDASDRWVITAINFNF-QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR 778
++ V S + + A+ ++++ D +G +L+GH E+ + P
Sbjct: 145 YSHHMSPV----STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY 200
Query: 779 VLLSAGHDGLIIIWDI 794
+L +A D + +WD+
Sbjct: 201 ILATASADSRVKLWDV 216
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 114/280 (40%), Gaps = 51/280 (18%)
Query: 532 LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC---I 588
+ + + DKT+++W+ TL V + + + ++++ ST C +
Sbjct: 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYS------------HHMSPVSTKHCLVAV 161
Query: 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKM 647
G K+ + K+ ++ R IL S+SP LAT S D V+++ +
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHR-----QEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 648 DGVDSPLGILE---------VEE----HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694
L L+ VE H+ KV+ + ++ L ++ D +W
Sbjct: 217 RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276
Query: 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG 754
+ NT + + K + + K +K T V+ S +V + + I ++ ++G
Sbjct: 277 GE--------NTLVNYGK-VCNNSKKGLKFT-VSCGCSSEFVF--VPYGSTIAVYTVYSG 324
Query: 755 DLVQVLKGH--TNEVFVLESHPFDSRVLLSAGHDGLIIIW 792
+ + +LKGH T + V +S + + L S D I+ W
Sbjct: 325 EQITMLKGHYKTVDCCVFQS---NFQELYSGSRDCNILAW 361
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 526 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNY-LASTST 584
+ ++ L+A GT +++ +L++ + +L GH+ I V++ P ++Y LA+ S
Sbjct: 152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR----YDYILATASA 207
Query: 585 DGCIGFWKYK------LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG 638
D + W + + +D + V G + LC F+ GL L T
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC--FTSDGLHLLTVGT 265
Query: 639 DHHVRVY 645
D+ +R++
Sbjct: 266 DNRMRLW 272
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
SE F + + + P+Y +++ P+D I+E +R Y S D KDV + N++ +N
Sbjct: 36 SEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN 94
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
SE F + + + P+Y +++ P+D I+E +R Y S D KDV + N++ +N
Sbjct: 36 SEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN 94
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
SE F + + + P+Y +++ P+D I+E +R Y S D KDV + N++ +N
Sbjct: 37 SEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN 95
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
SE F + + + P+Y +++ P+D I+E +R Y S D KDV + N++ +N
Sbjct: 37 SEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN 95
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 573
L G G IS + ++ N LL + + D T+RIW+ + GH I ++
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV---- 298
Query: 574 NGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI 614
G + + S S DG + W K + ++ ++ +F RI
Sbjct: 299 -GDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRI 338
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 532
+GH + + F+ +++++ +DD +++W +G G S I + + +
Sbjct: 244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKV 303
Query: 533 LAAGTVDKTIRIWNLQ--TLAPISVLVG 558
++ ++D ++R+W+L+ TL +S++ G
Sbjct: 304 ISC-SMDGSVRLWSLKQNTLLALSIVDG 330
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 103/251 (41%), Gaps = 24/251 (9%)
Query: 552 PISVLVGH-QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 610
P+ GH ++T V F P++ G YL S G + W + D + + + F
Sbjct: 55 PVVQFTGHGSSVVTTVKFSPIK--GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF 112
Query: 611 NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670
++ G + F G G G + V+ + LG EV HS ++++
Sbjct: 113 --QVLAGPISDISWDFE-GRRLCVVGEGRDNFGVFISWDSGNSLG--EVSGHSQRINACH 167
Query: 671 WSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729
S +R ++ DG+ + +Y+ ++F D H K+ S + +
Sbjct: 168 LKQSRPMRSMTVGDDGSVV--FYQGPPFKFSASDRT----HHKQGSFVRDVEFS------ 215
Query: 730 DASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEV--FVLESHPFDSRVLLSAGHDG 787
S +VIT + + +I +D +G+ ++ ++ V + DS+ + G D
Sbjct: 216 PDSGEFVIT-VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA 274
Query: 788 LIIIWDILSSK 798
I +WD+ +SK
Sbjct: 275 TIRVWDVTTSK 285
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 135 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193
SE F + + + P+Y +++ P+D I+E +R Y S D KDV + N++ +N
Sbjct: 32 SEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN 90
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 1550 SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608
SE F + + + P+Y +++ P+D I+E +R Y S D KDV + N++ +N
Sbjct: 32 SEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN 90
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 148 PDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
PDY + PMD+ IR + + Y+ V+D +F+N+ YN+
Sbjct: 52 PDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNE 98
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 1563 PDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
PDY + PMD+ IR + + Y+ V+D +F+N+ YN+
Sbjct: 52 PDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNE 98
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 148 PDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194
PDY + PMD+ IR + + Y+ V+D +F+N+ YN+
Sbjct: 52 PDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNE 98
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 1563 PDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609
PDY + PMD+ IR + + Y+ V+D +F+N+ YN+
Sbjct: 52 PDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNE 98
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680
I C +++ +A +H V +Y+ G + + + E++EH+ +V + W+ R V+
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 681 GSRDGTALIWYYKCSQWR 698
D A +W K W+
Sbjct: 70 CGTDRNAYVWTLKGRTWK 87
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 746 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793
IK+WD ++ + H +V + + P V LS D I++WD
Sbjct: 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 480 FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID-NRNILLAAGTV 538
FC L +V D++ + DGK L LR +++ +A++ + LA +V
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 271
Query: 539 DKTIRIWNLQTL 550
D+T++IW+L+ +
Sbjct: 272 DQTVKIWDLRQV 283
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 480 FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID-NRNILLAAGTV 538
FC L +V D++ + DGK L LR +++ +A++ + LA +V
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 271
Query: 539 DKTIRIWNLQTL 550
D+T++IW+L+ +
Sbjct: 272 DQTVKIWDLRQV 283
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 746 IKIWDAFNGD--LVQVLKGHTNEVF-VLESHPFDSRVLLSAGHDGLIIIW 792
+KI+D NG L+ L+GH V+ V +HP +L S +D +IIW
Sbjct: 37 VKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 480 FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID-NRNILLAAGTV 538
FC L +V D++ + DGK L LR +++ +A++ + LA +V
Sbjct: 213 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 272
Query: 539 DKTIRIWNLQTL 550
D+T++IW+L+ +
Sbjct: 273 DQTVKIWDLRQV 284
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 101/251 (40%), Gaps = 24/251 (9%)
Query: 552 PISVLVGH-QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 610
P+ GH ++T V F P++ G YL S G + W + D + + + F
Sbjct: 55 PVVQFTGHGSSVVTTVKFSPIK--GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF 112
Query: 611 NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670
++ G + F G G G + V+ + LG EV HS ++++
Sbjct: 113 --QVLAGPISDISWDFE-GRRLCVVGEGRDNFGVFISWDSGNSLG--EVSGHSQRINACH 167
Query: 671 WSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729
S R + DG+ + +Y+ ++F D H K+ S + +
Sbjct: 168 LKQSRPXRSXTVGDDGSVV--FYQGPPFKFSASDRT----HHKQGSFVRDVEFS------ 215
Query: 730 DASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEV--FVLESHPFDSRVLLSAGHDG 787
S +VIT + + +I +D +G+ ++ ++ V + DS+ + G D
Sbjct: 216 PDSGEFVIT-VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA 274
Query: 788 LIIIWDILSSK 798
I +WD+ +SK
Sbjct: 275 TIRVWDVTTSK 285
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 136/355 (38%), Gaps = 66/355 (18%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKL---------------WRARDGKLLATLRGCS 518
GH V V++D G + T + D IK+ WRA D ++A
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI----- 63
Query: 519 GEISDIAIDNRNILLAAGTVDKTIRIW---------NLQTLAPISVLVGHQGIITGVNFC 569
D A ++A+ + DKT+++W + + + L +G + V F
Sbjct: 64 ----DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA 119
Query: 570 PLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI---LCSS 625
P + G LA DG + + D+ S T+ E + + I P N H+ C S
Sbjct: 120 PAHL-GLK-LACLGNDGILRLYDALEPSDLRSWTLTSEXKVLS--IPPAN-HLQSDFCLS 174
Query: 626 FSPGGLF---LATGSGDHHVRVYKMDGVDSPLGI-LEVEEHSDKVDSIQWSHSHLRF--- 678
+ P LA + + + +Y+ G D L + ++ H + SI W+ S R+
Sbjct: 175 WCPSRFSPEKLAVSALEQAI-IYQR-GKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232
Query: 679 -VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 737
+G +DG R ++ ++E+ +N V DA R
Sbjct: 233 IATGCKDGRI----------RIFKITEKLSPLASEESLTNSNXFDNSADVDXDAQGR--- 279
Query: 738 TAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 792
+ N + ++ +L+ H EV+ + S +L SAG DG + +W
Sbjct: 280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV-SWNLTGTILSSAGDDGKVRLW 333
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 136/355 (38%), Gaps = 66/355 (18%)
Query: 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKL---------------WRARDGKLLATLRGCS 518
GH V V++D G + T + D IK+ WRA D ++A
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI----- 63
Query: 519 GEISDIAIDNRNILLAAGTVDKTIRIW---------NLQTLAPISVLVGHQGIITGVNFC 569
D A ++A+ + DKT+++W + + + L +G + V F
Sbjct: 64 ----DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA 119
Query: 570 PLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI---LCSS 625
P + G LA DG + + D+ S T+ E + + I P N H+ C S
Sbjct: 120 PAHL-GLK-LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS--IPPAN-HLQSDFCLS 174
Query: 626 FSPGGLF---LATGSGDHHVRVYKMDGVDSPLGI-LEVEEHSDKVDSIQWSHSHLRF--- 678
+ P LA + + + +Y+ G D L + ++ H + SI W+ S R+
Sbjct: 175 WCPSRFSPEKLAVSALEQAI-IYQR-GKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232
Query: 679 -VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 737
+G +DG R ++ ++E+ +N V DA R
Sbjct: 233 IATGCKDGRI----------RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR--- 279
Query: 738 TAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 792
+ N + ++ +L+ H EV+ + S +L SAG DG + +W
Sbjct: 280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV-SWNLTGTILSSAGDDGKVRLW 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,833,052
Number of Sequences: 62578
Number of extensions: 2183516
Number of successful extensions: 5942
Number of sequences better than 100.0: 187
Number of HSP's better than 100.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 4677
Number of HSP's gapped (non-prelim): 733
length of query: 1915
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1802
effective length of database: 7,902,023
effective search space: 14239445446
effective search space used: 14239445446
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)