Query psy9598
Match_columns 1915
No_of_seqs 1801 out of 7675
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 23:53:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 7.6E-42 2.6E-46 455.1 47.5 401 452-882 37-569 (611)
2 1nr0_A Actin interacting prote 100.0 4.1E-41 1.4E-45 448.1 50.3 414 445-878 72-609 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 4.8E-39 1.7E-43 424.1 52.4 377 446-877 194-577 (577)
4 2ymu_A WD-40 repeat protein; u 100.0 2E-39 6.8E-44 427.8 48.0 403 467-910 7-444 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 5.8E-39 2E-43 462.7 49.6 431 445-910 628-1236(1249)
6 1vyh_C Platelet-activating fac 100.0 5.2E-39 1.8E-43 406.3 39.8 288 470-794 102-409 (410)
7 1got_B GT-beta; complex (GTP-b 100.0 6.5E-38 2.2E-42 385.7 45.8 292 466-793 45-340 (340)
8 3uv5_A Transcription initiatio 100.0 1.9E-40 6.5E-45 387.6 21.1 228 1373-1638 14-242 (265)
9 3ow8_A WD repeat-containing pr 100.0 1E-37 3.5E-42 381.0 42.1 289 469-794 25-319 (321)
10 3iz6_a 40S ribosomal protein R 100.0 3.7E-38 1.3E-42 394.3 36.4 312 465-799 55-378 (380)
11 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-37 7.3E-42 446.4 49.5 417 469-910 608-1196(1249)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.7E-37 9.3E-42 381.1 40.1 319 465-799 4-338 (345)
13 2pbi_B Guanine nucleotide-bind 100.0 7.4E-37 2.5E-41 378.7 44.1 292 467-793 55-354 (354)
14 2ynn_A Coatomer subunit beta'; 100.0 7.8E-37 2.7E-41 369.9 42.9 296 466-796 3-302 (304)
15 1vyh_C Platelet-activating fac 100.0 7E-37 2.4E-41 386.8 42.4 289 511-843 101-409 (410)
16 1r5m_A SIR4-interacting protei 100.0 6.3E-37 2.1E-41 385.4 40.0 340 471-844 40-424 (425)
17 3aad_A Transcription initiatio 100.0 6E-39 2.1E-43 378.7 18.7 225 1376-1638 50-275 (292)
18 3frx_A Guanine nucleotide-bind 100.0 4.9E-36 1.7E-40 365.6 43.8 293 465-797 6-318 (319)
19 1pgu_A Actin interacting prote 100.0 9.5E-36 3.2E-40 394.9 48.7 398 453-880 38-614 (615)
20 2xzm_R RACK1; ribosome, transl 100.0 3.9E-36 1.3E-40 370.2 41.8 295 466-797 11-341 (343)
21 3ow8_A WD repeat-containing pr 100.0 3.7E-36 1.3E-40 367.1 40.1 292 509-844 23-320 (321)
22 1got_B GT-beta; complex (GTP-b 100.0 2E-35 6.7E-40 363.6 44.8 294 508-842 45-340 (340)
23 2oaj_A Protein SNI1; WD40 repe 100.0 6.5E-36 2.2E-40 413.3 44.3 362 471-846 12-520 (902)
24 2r0y_A Chromatin structure-rem 100.0 5.3E-38 1.8E-42 371.8 19.9 239 1365-1638 23-269 (311)
25 2oaj_A Protein SNI1; WD40 repe 100.0 7.3E-36 2.5E-40 412.8 43.3 416 446-878 31-659 (902)
26 4ery_A WD repeat-containing pr 100.0 6.2E-35 2.1E-39 353.7 46.0 298 464-795 11-311 (312)
27 1erj_A Transcriptional repress 100.0 1.1E-35 3.8E-40 373.6 40.5 299 473-797 61-390 (393)
28 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.3E-35 7.9E-40 363.8 42.5 316 508-853 5-343 (345)
29 4g56_B MGC81050 protein; prote 100.0 4.8E-36 1.6E-40 371.9 36.5 324 481-848 10-346 (357)
30 2ynn_A Coatomer subunit beta'; 100.0 2.7E-35 9.1E-40 356.4 42.0 294 509-845 4-302 (304)
31 3iz6_a 40S ribosomal protein R 100.0 3.5E-36 1.2E-40 376.4 34.9 318 499-848 47-378 (380)
32 3mkq_A Coatomer beta'-subunit; 100.0 6.6E-35 2.2E-39 401.1 49.6 375 466-879 3-422 (814)
33 1gxr_A ESG1, transducin-like e 100.0 1.8E-35 6.3E-40 360.0 39.1 323 475-843 8-335 (337)
34 2hes_X YDR267CP; beta-propelle 100.0 4.6E-35 1.6E-39 358.8 42.4 307 465-796 3-328 (330)
35 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.4E-35 2.9E-39 371.4 46.4 326 468-846 110-443 (445)
36 2pm9_A Protein WEB1, protein t 100.0 8.9E-37 3E-41 384.3 27.2 343 475-846 11-415 (416)
37 4aow_A Guanine nucleotide-bind 100.0 1.3E-34 4.6E-39 353.5 45.5 305 456-798 18-339 (340)
38 2r10_A Chromatin structure-rem 100.0 2.3E-37 7.8E-42 375.5 20.7 239 1365-1638 73-319 (361)
39 2pbi_B Guanine nucleotide-bind 100.0 1.5E-34 5.1E-39 358.0 45.1 296 509-842 55-354 (354)
40 3mkq_A Coatomer beta'-subunit; 100.0 7E-35 2.4E-39 400.9 44.2 386 446-883 27-463 (814)
41 3zwl_B Eukaryotic translation 100.0 4.7E-34 1.6E-38 351.9 46.5 306 467-799 23-349 (369)
42 4gqb_B Methylosome protein 50; 100.0 4.3E-35 1.5E-39 361.2 36.9 305 500-848 16-334 (344)
43 1pgu_A Actin interacting prote 100.0 2.1E-34 7.3E-39 381.8 44.3 362 454-845 142-614 (615)
44 4g56_B MGC81050 protein; prote 100.0 4.4E-35 1.5E-39 363.2 34.3 291 472-798 38-345 (357)
45 4ery_A WD repeat-containing pr 100.0 8.9E-34 3.1E-38 343.5 44.4 295 508-844 13-311 (312)
46 4gqb_B Methylosome protein 50; 100.0 8.9E-35 3.1E-39 358.4 34.2 288 473-799 27-334 (344)
47 3frx_A Guanine nucleotide-bind 100.0 5.6E-34 1.9E-38 347.4 40.8 296 509-846 8-318 (319)
48 2hes_X YDR267CP; beta-propelle 100.0 1.2E-33 4E-38 346.4 42.0 308 506-845 2-328 (330)
49 3dm0_A Maltose-binding peripla 100.0 1.1E-33 3.8E-38 382.4 45.5 293 467-795 373-692 (694)
50 3v7d_B Cell division control p 100.0 2.4E-33 8.2E-38 359.5 46.0 335 469-842 114-460 (464)
51 3vl1_A 26S proteasome regulato 100.0 2.5E-34 8.5E-39 363.0 35.2 331 477-845 57-419 (420)
52 1sq9_A Antiviral protein SKI8; 100.0 1.1E-33 3.6E-38 354.1 38.2 313 466-798 6-397 (397)
53 4aow_A Guanine nucleotide-bind 100.0 5.8E-33 2E-37 339.0 40.9 303 505-847 25-339 (340)
54 2xzm_R RACK1; ribosome, transl 100.0 3.3E-33 1.1E-37 344.0 38.7 297 509-846 12-341 (343)
55 1erj_A Transcriptional repress 100.0 3.8E-33 1.3E-37 350.4 38.7 292 516-846 62-390 (393)
56 3ei3_B DNA damage-binding prot 100.0 1.2E-32 4E-37 343.7 40.9 309 465-796 62-382 (383)
57 4a11_B DNA excision repair pro 100.0 9.1E-33 3.1E-37 345.8 39.7 341 468-845 35-405 (408)
58 1k8k_C P40, ARP2/3 complex 41 100.0 5.3E-33 1.8E-37 343.9 35.7 298 472-799 4-364 (372)
59 1r5m_A SIR4-interacting protei 100.0 1.9E-32 6.5E-37 344.5 40.8 310 446-795 60-424 (425)
60 3odt_A Protein DOA1; ubiquitin 100.0 3.7E-32 1.3E-36 327.4 41.5 290 463-799 5-299 (313)
61 4e54_B DNA damage-binding prot 100.0 1.6E-33 5.6E-38 358.8 30.0 312 469-799 112-433 (435)
62 3zwl_B Eukaryotic translation 100.0 1.1E-31 3.6E-36 330.8 43.9 298 509-849 23-350 (369)
63 1gxr_A ESG1, transducin-like e 100.0 6.8E-32 2.3E-36 328.4 40.7 284 470-794 45-335 (337)
64 3ei3_B DNA damage-binding prot 100.0 5.3E-32 1.8E-36 337.8 37.8 300 502-845 57-382 (383)
65 4gga_A P55CDC, cell division c 100.0 1.3E-31 4.3E-36 339.6 41.5 285 478-799 107-398 (420)
66 3i2n_A WD repeat-containing pr 100.0 4.8E-32 1.7E-36 332.9 35.9 305 469-798 11-355 (357)
67 3k26_A Polycomb protein EED; W 100.0 1.4E-32 4.8E-37 338.7 30.5 308 470-795 12-365 (366)
68 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-33 7.7E-38 363.8 24.3 310 489-846 174-518 (524)
69 2pm9_A Protein WEB1, protein t 100.0 2.6E-33 8.8E-38 352.6 23.6 318 451-797 42-415 (416)
70 3gre_A Serine/threonine-protei 100.0 2.7E-32 9.1E-37 346.9 33.2 342 467-842 53-437 (437)
71 3dwl_C Actin-related protein 2 100.0 3.8E-33 1.3E-37 347.0 24.8 295 472-794 7-377 (377)
72 1sq9_A Antiviral protein SKI8; 100.0 1.6E-31 5.4E-36 334.3 39.0 311 510-847 8-397 (397)
73 3odt_A Protein DOA1; ubiquitin 100.0 4.7E-31 1.6E-35 317.7 41.6 294 508-851 8-302 (313)
74 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-31 4E-36 326.5 36.0 310 470-799 5-340 (351)
75 4ggc_A P55CDC, cell division c 100.0 5.3E-31 1.8E-35 318.4 41.3 283 479-798 28-317 (318)
76 4e54_B DNA damage-binding prot 100.0 2.3E-32 8E-37 348.1 30.8 299 511-848 112-433 (435)
77 3v7d_B Cell division control p 100.0 5.3E-31 1.8E-35 337.7 42.8 303 444-793 132-460 (464)
78 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5E-31 1.7E-35 336.5 41.8 306 443-796 128-442 (445)
79 1k8k_C P40, ARP2/3 complex 41 100.0 3.6E-31 1.2E-35 327.4 39.2 318 514-848 4-364 (372)
80 4aez_A CDC20, WD repeat-contai 100.0 3.3E-31 1.1E-35 333.5 39.4 291 471-799 86-383 (401)
81 2j04_B YDR362CP, TAU91; beta p 100.0 2.2E-32 7.4E-37 354.5 29.2 315 447-796 176-517 (524)
82 3k26_A Polycomb protein EED; W 100.0 1.5E-31 5.3E-36 329.3 34.1 311 513-844 13-365 (366)
83 3dm0_A Maltose-binding peripla 100.0 2.5E-31 8.5E-36 359.4 39.3 297 511-845 375-693 (694)
84 4a11_B DNA excision repair pro 100.0 1E-31 3.4E-36 336.3 32.8 329 497-852 22-372 (408)
85 2pm7_B Protein transport prote 100.0 3.1E-31 1.1E-35 319.6 35.6 257 470-752 3-284 (297)
86 3vl1_A 26S proteasome regulato 100.0 4.5E-31 1.5E-35 333.2 38.5 326 444-796 68-419 (420)
87 1yfq_A Cell cycle arrest prote 100.0 1.2E-30 4.2E-35 319.0 39.0 294 469-794 4-322 (342)
88 1p22_A F-BOX/WD-repeat protein 100.0 6.8E-31 2.3E-35 334.4 36.6 281 471-799 128-417 (435)
89 3i2n_A WD repeat-containing pr 100.0 7.2E-31 2.5E-35 322.5 34.6 302 511-848 11-356 (357)
90 3bg1_A Protein SEC13 homolog; 100.0 2.3E-31 7.9E-36 323.8 28.8 258 471-752 8-292 (316)
91 3jrp_A Fusion protein of prote 100.0 9E-31 3.1E-35 324.1 32.9 264 469-756 4-290 (379)
92 3dwl_C Actin-related protein 2 100.0 1.5E-31 5E-36 332.7 24.6 313 514-843 7-377 (377)
93 3uv5_A Transcription initiatio 100.0 3E-32 1E-36 318.3 16.0 185 1-223 57-242 (265)
94 4h5i_A Guanine nucleotide-exch 100.0 1.4E-30 4.7E-35 323.9 31.1 287 476-797 14-344 (365)
95 3mmy_A MRNA export factor; mRN 100.0 3.9E-30 1.3E-34 316.7 33.9 311 462-797 25-347 (368)
96 4h5i_A Guanine nucleotide-exch 100.0 1.7E-29 5.8E-34 314.0 38.9 293 518-846 14-344 (365)
97 3dw8_B Serine/threonine-protei 100.0 5.9E-30 2E-34 325.5 34.6 305 474-794 26-444 (447)
98 2pm7_B Protein transport prote 100.0 1E-29 3.5E-34 306.3 34.6 258 512-796 3-285 (297)
99 4aez_A CDC20, WD repeat-contai 100.0 2.5E-29 8.6E-34 316.3 36.4 297 511-852 84-387 (401)
100 3dw8_B Serine/threonine-protei 100.0 5.5E-30 1.9E-34 325.8 28.5 313 517-843 27-444 (447)
101 4gga_A P55CDC, cell division c 100.0 1.3E-28 4.5E-33 311.9 41.0 288 520-850 107-400 (420)
102 3jrp_A Fusion protein of prote 100.0 1.5E-29 5E-34 313.2 31.3 265 508-799 1-290 (379)
103 3bg1_A Protein SEC13 homolog; 100.0 7.3E-30 2.5E-34 310.6 28.0 256 513-796 8-293 (316)
104 3aad_A Transcription initiatio 100.0 4.9E-31 1.7E-35 311.3 14.7 185 1-223 90-275 (292)
105 1yfq_A Cell cycle arrest prote 100.0 6.6E-29 2.3E-33 303.6 33.8 286 512-842 5-321 (342)
106 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-30 4.5E-35 328.9 17.8 272 475-795 14-296 (588)
107 4ggc_A P55CDC, cell division c 100.0 3.5E-28 1.2E-32 293.6 38.4 283 521-846 28-316 (318)
108 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-28 4.4E-33 313.4 36.0 283 515-850 130-419 (435)
109 3gre_A Serine/threonine-protei 100.0 1.8E-29 6.1E-34 320.9 27.9 310 484-832 35-391 (437)
110 3mmy_A MRNA export factor; mRN 100.0 9.9E-29 3.4E-33 304.1 32.5 297 502-844 23-345 (368)
111 3jro_A Fusion protein of prote 100.0 2.9E-29 9.9E-34 341.8 28.3 263 469-755 2-287 (753)
112 2aq5_A Coronin-1A; WD40 repeat 100.0 5.7E-29 1.9E-33 313.0 26.6 289 478-799 36-345 (402)
113 2r0y_A Chromatin structure-rem 100.0 1E-29 3.4E-34 301.1 17.7 177 1-223 73-269 (311)
114 2j04_A TAU60, YPL007P, hypothe 100.0 3.1E-29 1.1E-33 316.4 21.9 325 516-910 13-348 (588)
115 1l0q_A Surface layer protein; 100.0 9.4E-27 3.2E-31 290.8 43.5 335 488-866 2-363 (391)
116 3f3f_A Nucleoporin SEH1; struc 100.0 6.2E-28 2.1E-32 293.5 31.6 311 512-850 5-342 (351)
117 2r10_A Chromatin structure-rem 100.0 3.6E-29 1.2E-33 303.8 18.0 177 1-223 123-319 (361)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.8E-27 2E-31 299.6 38.0 300 477-796 5-391 (450)
119 2xyi_A Probable histone-bindin 100.0 2.4E-27 8.1E-32 301.4 32.9 261 512-797 122-411 (430)
120 3bws_A Protein LP49; two-domai 100.0 3.4E-26 1.2E-30 289.9 42.8 323 475-845 59-432 (433)
121 3vu4_A KMHSV2; beta-propeller 100.0 7.9E-27 2.7E-31 288.8 33.7 314 502-847 3-338 (355)
122 3vu4_A KMHSV2; beta-propeller 100.0 1.9E-26 6.6E-31 285.3 35.2 286 470-799 13-339 (355)
123 2aq5_A Coronin-1A; WD40 repeat 100.0 3.9E-27 1.3E-31 296.2 28.8 276 448-756 51-345 (402)
124 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.3E-26 1.1E-30 292.5 37.1 289 519-845 5-391 (450)
125 3bws_A Protein LP49; two-domai 100.0 3.4E-26 1.2E-30 289.9 36.5 306 450-796 95-432 (433)
126 3jro_A Fusion protein of prote 100.0 2.7E-27 9.2E-32 322.4 27.3 262 511-799 2-288 (753)
127 1l0q_A Surface layer protein; 99.9 6.3E-25 2.2E-29 274.2 42.9 330 447-832 5-365 (391)
128 2xyi_A Probable histone-bindin 99.9 7.5E-26 2.6E-30 287.6 31.1 267 470-753 122-410 (430)
129 3lrv_A PRE-mRNA-splicing facto 99.9 3.2E-26 1.1E-30 281.6 26.1 275 482-795 42-332 (343)
130 1nir_A Nitrite reductase; hemo 99.9 6.3E-25 2.2E-29 286.7 37.0 356 483-864 144-533 (543)
131 4gq1_A NUP37; propeller, trans 99.9 1.1E-25 3.8E-30 282.5 27.2 264 558-844 87-388 (393)
132 4gq1_A NUP37; propeller, trans 99.9 4.9E-26 1.7E-30 285.8 23.5 276 472-794 85-387 (393)
133 3lrv_A PRE-mRNA-splicing facto 99.9 1.1E-25 3.8E-30 276.8 25.5 278 525-845 43-333 (343)
134 2w18_A PALB2, fancn, partner a 99.9 5.3E-24 1.8E-28 253.8 37.2 301 464-843 23-355 (356)
135 1k32_A Tricorn protease; prote 99.9 6.1E-24 2.1E-28 300.1 40.4 369 454-879 33-501 (1045)
136 3q2e_A Bromodomain and WD repe 99.9 4E-25 1.4E-29 227.0 11.8 112 114-225 7-118 (123)
137 3g0l_A Hwalp4, bromodomain adj 99.9 8E-25 2.7E-29 223.1 13.1 107 113-220 9-115 (117)
138 3mb3_A PH-interacting protein; 99.9 4.7E-25 1.6E-29 230.5 11.7 113 113-225 17-129 (135)
139 3d7c_A General control of amin 99.9 6.8E-25 2.3E-29 221.5 11.0 105 114-219 4-108 (112)
140 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.8E-23 2E-27 259.7 30.2 301 476-826 62-409 (415)
141 2d9e_A Peregrin; four-helix bu 99.9 2.2E-24 7.5E-29 220.1 12.9 108 115-223 5-112 (121)
142 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-22 3.6E-27 276.9 32.3 340 476-846 36-460 (741)
143 2w18_A PALB2, fancn, partner a 99.9 1E-22 3.6E-27 242.7 28.0 272 450-794 59-355 (356)
144 2i7k_A Bromodomain-containing 99.9 2.7E-24 9.1E-29 217.6 11.8 105 115-220 6-110 (117)
145 1e6i_A Transcriptional activat 99.9 1.8E-24 6.2E-29 221.0 10.4 102 117-219 13-114 (121)
146 1nir_A Nitrite reductase; hemo 99.9 1.4E-22 4.8E-27 264.5 30.7 321 526-890 145-524 (543)
147 4alg_A Bromodomain-containing 99.9 2E-24 6.8E-29 229.6 10.4 108 113-221 28-137 (154)
148 3q2e_A Bromodomain and WD repe 99.9 3.2E-24 1.1E-28 220.2 11.6 114 1529-1642 7-120 (123)
149 3nxb_A CAT eye syndrome critic 99.9 2.6E-24 8.8E-29 219.0 10.5 102 115-217 14-115 (116)
150 2dat_A Possible global transcr 99.9 2.1E-24 7.1E-29 221.4 9.6 105 114-219 10-120 (123)
151 2oss_A HUNK1 protein, bromodom 99.9 3.7E-24 1.3E-28 220.3 11.1 105 113-218 17-123 (127)
152 3p1f_A CREB-binding protein; s 99.9 5.9E-24 2E-28 217.3 12.0 109 112-221 6-117 (119)
153 3mb3_A PH-interacting protein; 99.9 5.3E-24 1.8E-28 222.6 11.8 116 1527-1642 16-131 (135)
154 3mb4_A Protein polybromo-1; PB 99.9 3.6E-24 1.2E-28 220.2 10.1 108 111-219 9-122 (124)
155 2grc_A Probable global transcr 99.9 6.1E-24 2.1E-28 219.6 11.1 110 113-223 7-123 (129)
156 2ouo_A HUNK1 protein, bromodom 99.9 4.6E-24 1.6E-28 220.6 9.6 107 112-219 17-128 (130)
157 2yyn_A Transcription intermedi 99.9 9E-24 3.1E-28 219.9 10.7 108 114-223 17-126 (135)
158 1k32_A Tricorn protease; prote 99.9 1.1E-21 3.7E-26 277.1 35.5 369 469-882 196-639 (1045)
159 3hme_A Bromodomain-containing 99.9 1.6E-23 5.5E-28 214.6 12.0 104 115-219 11-114 (123)
160 3rcw_A Bromodomain-containing 99.9 2.8E-23 9.5E-28 217.1 13.4 108 115-223 11-118 (135)
161 3ljw_A Protein polybromo-1; al 99.9 1.2E-23 4.3E-28 214.9 10.2 106 115-221 6-117 (120)
162 3d7c_A General control of amin 99.9 1.5E-23 5E-28 211.8 10.2 105 1529-1634 4-108 (112)
163 3mqm_A Probable histone-lysine 99.9 1.5E-23 5.3E-28 216.3 10.4 107 116-223 8-120 (126)
164 3g0l_A Hwalp4, bromodomain adj 99.9 3.2E-23 1.1E-27 211.3 12.5 105 1530-1635 11-115 (117)
165 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.2E-21 4.2E-26 247.5 29.6 279 454-774 93-407 (415)
166 3k2j_A Protein polybromo-1; PB 99.9 2.5E-23 8.5E-28 214.6 11.4 106 115-221 15-126 (130)
167 3fkm_X Signaling protein; brom 99.9 2.8E-23 9.6E-28 223.6 12.2 104 115-219 19-124 (166)
168 3iu5_A Protein polybromo-1; PB 99.9 1.9E-23 6.6E-28 212.3 9.7 104 116-220 4-113 (116)
169 3jvl_A Bromodomain-containing 99.9 1.1E-23 3.7E-28 215.8 7.7 106 114-220 6-116 (120)
170 2d9e_A Peregrin; four-helix bu 99.9 5.2E-23 1.8E-27 209.9 12.6 107 1531-1638 6-112 (121)
171 2grc_A Probable global transcr 99.9 3.5E-23 1.2E-27 214.0 10.6 109 1527-1636 6-121 (129)
172 2dat_A Possible global transcr 99.9 2.5E-23 8.7E-28 213.3 9.1 106 1528-1634 9-120 (123)
173 2i7k_A Bromodomain-containing 99.9 6.5E-23 2.2E-27 207.5 11.0 103 1531-1634 7-109 (117)
174 3nxb_A CAT eye syndrome critic 99.9 5.6E-23 1.9E-27 209.1 10.3 102 1530-1632 14-115 (116)
175 1e6i_A Transcriptional activat 99.9 5.8E-23 2E-27 209.8 10.1 102 1532-1634 13-114 (121)
176 4alg_A Bromodomain-containing 99.9 4.5E-23 1.5E-27 219.2 8.7 108 1528-1636 28-137 (154)
177 3ljw_A Protein polybromo-1; al 99.9 8.1E-23 2.8E-27 208.8 9.9 107 1529-1636 5-117 (120)
178 3uv4_A Second bromodomain of h 99.9 1.5E-22 5.1E-27 215.6 12.1 105 118-223 30-135 (158)
179 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-21 4.1E-26 265.6 24.0 328 478-835 18-430 (723)
180 2z3z_A Dipeptidyl aminopeptida 99.9 8.6E-21 2.9E-25 256.6 32.2 333 479-847 28-437 (706)
181 3mb4_A Protein polybromo-1; PB 99.9 8.5E-23 2.9E-27 210.0 9.4 106 1528-1634 11-122 (124)
182 3k2j_A Protein polybromo-1; PB 99.9 1.4E-22 4.9E-27 209.0 11.0 106 1530-1636 15-126 (130)
183 3p1f_A CREB-binding protein; s 99.9 1.8E-22 6.1E-27 206.4 11.1 108 1528-1636 7-117 (119)
184 2oss_A HUNK1 protein, bromodom 99.9 1.4E-22 4.8E-27 208.6 10.1 106 1528-1634 17-124 (127)
185 3mqm_A Probable histone-lysine 99.9 1.4E-22 4.7E-27 209.3 10.1 107 1531-1638 8-120 (126)
186 3u4y_A Uncharacterized protein 99.9 4.9E-20 1.7E-24 224.2 34.1 281 482-798 3-306 (331)
187 1ri6_A Putative isomerase YBHE 99.9 5.1E-20 1.7E-24 224.3 34.3 305 490-826 7-334 (343)
188 3fkm_X Signaling protein; brom 99.9 2.8E-22 9.7E-27 215.8 12.5 107 1527-1634 16-124 (166)
189 3iu5_A Protein polybromo-1; PB 99.9 1.4E-22 4.9E-27 205.9 9.2 105 1530-1635 3-113 (116)
190 2yyn_A Transcription intermedi 99.9 3.5E-22 1.2E-26 208.0 11.2 107 1528-1636 16-124 (135)
191 3rcw_A Bromodomain-containing 99.9 5.9E-22 2E-26 207.1 12.9 106 1531-1637 12-117 (135)
192 2ouo_A HUNK1 protein, bromodom 99.9 2.2E-22 7.5E-27 208.0 8.8 102 1532-1634 22-128 (130)
193 3hme_A Bromodomain-containing 99.9 5.4E-22 1.8E-26 203.3 11.5 103 1531-1634 12-114 (123)
194 2ecf_A Dipeptidyl peptidase IV 99.9 4.4E-20 1.5E-24 251.0 33.8 306 518-867 36-441 (741)
195 3jvl_A Bromodomain-containing 99.9 2.3E-22 8E-27 205.8 6.5 104 1530-1634 7-115 (120)
196 2ri7_A Nucleosome-remodeling f 99.9 3.5E-22 1.2E-26 219.4 8.0 105 114-219 69-173 (174)
197 3tlp_A Protein polybromo-1; PB 99.9 7.3E-22 2.5E-26 210.3 10.0 104 119-223 26-136 (150)
198 3dai_A ATPase family AAA domai 99.8 1.5E-21 5.2E-26 202.2 11.2 99 117-216 10-112 (130)
199 2ojh_A Uncharacterized protein 99.8 9.3E-20 3.2E-24 216.1 28.0 257 493-787 17-293 (297)
200 3uv4_A Second bromodomain of h 99.8 3.1E-21 1.1E-25 205.4 11.1 104 1534-1638 31-135 (158)
201 3o36_A Transcription intermedi 99.8 3E-21 1E-25 213.5 10.7 105 113-219 77-183 (184)
202 3vgz_A Uncharacterized protein 99.8 1.7E-18 5.8E-23 212.1 36.4 272 476-787 40-335 (353)
203 3u4y_A Uncharacterized protein 99.8 9E-19 3.1E-23 213.1 33.1 288 525-847 4-306 (331)
204 2z3z_A Dipeptidyl aminopeptida 99.8 3.9E-19 1.3E-23 240.4 32.3 284 477-798 82-437 (706)
205 2ojh_A Uncharacterized protein 99.8 2.8E-19 9.4E-24 212.0 27.1 259 535-836 17-293 (297)
206 2dkw_A Hypothetical protein KI 99.8 6.7E-21 2.3E-25 196.3 10.9 96 116-217 11-110 (131)
207 1pby_B Quinohemoprotein amine 99.8 7.8E-19 2.7E-23 213.2 30.9 294 489-853 2-318 (337)
208 3tlp_A Protein polybromo-1; PB 99.8 4.9E-21 1.7E-25 204.0 9.7 101 1534-1635 26-133 (150)
209 1xfd_A DIP, dipeptidyl aminope 99.8 3.3E-19 1.1E-23 241.7 28.8 314 520-868 18-427 (723)
210 2ro1_A Transcription intermedi 99.8 4.3E-21 1.5E-25 211.3 8.2 104 114-223 73-181 (189)
211 3u5n_A E3 ubiquitin-protein li 99.8 1E-20 3.6E-25 212.8 11.4 108 112-221 76-203 (207)
212 1ri6_A Putative isomerase YBHE 99.8 3E-18 1E-22 208.6 33.7 292 451-774 12-332 (343)
213 3vgz_A Uncharacterized protein 99.8 5.4E-18 1.8E-22 207.7 35.9 286 518-836 40-335 (353)
214 3hfq_A Uncharacterized protein 99.8 5E-18 1.7E-22 208.3 35.2 295 490-799 4-322 (347)
215 2ri7_A Nucleosome-remodeling f 99.8 7.1E-21 2.4E-25 209.0 8.1 105 1528-1633 68-172 (174)
216 3dai_A ATPase family AAA domai 99.8 2.1E-20 7E-25 193.7 10.8 100 1531-1631 9-112 (130)
217 3o36_A Transcription intermedi 99.8 4.1E-20 1.4E-24 204.4 10.2 105 1528-1634 77-183 (184)
218 2dkw_A Hypothetical protein KI 99.8 4.1E-20 1.4E-24 190.4 9.4 96 1531-1632 11-110 (131)
219 1z68_A Fibroblast activation p 99.8 7.4E-19 2.5E-23 238.2 24.3 342 481-849 20-447 (719)
220 3scy_A Hypothetical bacterial 99.8 2.2E-16 7.4E-21 195.0 41.1 313 486-823 11-360 (361)
221 3o4h_A Acylamino-acid-releasin 99.8 4.9E-18 1.7E-22 224.3 26.9 269 518-845 21-315 (582)
222 3o4h_A Acylamino-acid-releasin 99.8 3.5E-18 1.2E-22 225.6 25.4 278 476-796 21-315 (582)
223 1jmx_B Amine dehydrogenase; ox 99.8 2.4E-17 8.2E-22 201.3 31.0 284 481-806 4-333 (349)
224 3u5n_A E3 ubiquitin-protein li 99.8 2.2E-19 7.4E-24 202.1 11.4 106 1528-1635 77-202 (207)
225 3hfq_A Uncharacterized protein 99.8 2.5E-17 8.5E-22 202.1 30.5 280 451-758 13-324 (347)
226 2ro1_A Transcription intermedi 99.8 1.4E-19 4.8E-24 199.3 8.0 102 1529-1636 73-179 (189)
227 1pby_B Quinohemoprotein amine 99.8 1.3E-17 4.3E-22 202.5 24.2 274 448-765 5-322 (337)
228 1jmx_B Amine dehydrogenase; ox 99.8 7.4E-17 2.5E-21 197.0 28.1 308 523-853 4-333 (349)
229 4a5s_A Dipeptidyl peptidase 4 99.8 1.4E-16 4.7E-21 216.6 32.4 341 478-848 18-452 (740)
230 3scy_A Hypothetical bacterial 99.7 5.2E-16 1.8E-20 191.5 34.2 295 450-773 23-360 (361)
231 2oit_A Nucleoporin 214KDA; NH2 99.7 5.5E-17 1.9E-21 206.0 25.5 250 475-751 35-331 (434)
232 1z68_A Fibroblast activation p 99.7 3.2E-17 1.1E-21 222.1 23.2 320 523-882 20-445 (719)
233 3pe7_A Oligogalacturonate lyas 99.7 3.4E-16 1.2E-20 194.8 28.4 305 500-843 12-380 (388)
234 3pe7_A Oligogalacturonate lyas 99.7 8.9E-17 3.1E-21 200.0 23.0 294 468-795 22-381 (388)
235 1jof_A Carboxy-CIS,CIS-muconat 99.7 4E-15 1.4E-19 184.3 36.5 289 490-797 4-342 (365)
236 3iu6_A Protein polybromo-1; PB 99.7 3.4E-17 1.2E-21 167.6 12.8 104 1530-1638 5-114 (147)
237 2oit_A Nucleoporin 214KDA; NH2 99.7 6.3E-16 2.2E-20 196.2 26.6 274 540-844 23-332 (434)
238 2oiz_A Aromatic amine dehydrog 99.7 4.8E-15 1.6E-19 183.5 33.2 304 487-827 14-360 (361)
239 3c5m_A Oligogalacturonate lyas 99.7 8.8E-16 3E-20 191.1 25.5 305 479-847 38-386 (396)
240 4a5s_A Dipeptidyl peptidase 4 99.7 4.3E-15 1.5E-19 202.0 27.8 305 519-866 17-431 (740)
241 3iu6_A Protein polybromo-1; PB 99.7 3.8E-16 1.3E-20 159.9 12.7 101 116-221 6-112 (147)
242 3azo_A Aminopeptidase; POP fam 99.6 6.1E-15 2.1E-19 197.7 27.4 299 471-799 18-372 (662)
243 1jof_A Carboxy-CIS,CIS-muconat 99.6 2.9E-14 9.8E-19 176.6 31.4 282 532-846 4-342 (365)
244 1qks_A Cytochrome CD1 nitrite 99.6 3.7E-13 1.3E-17 175.3 39.2 346 485-854 164-547 (567)
245 2oiz_A Aromatic amine dehydrog 99.6 2E-13 6.9E-18 168.8 29.7 289 452-778 29-360 (361)
246 3c5m_A Oligogalacturonate lyas 99.6 2.5E-14 8.6E-19 177.9 20.0 297 501-867 13-367 (396)
247 2dg1_A DRP35, lactonase; beta 99.6 5.3E-13 1.8E-17 162.5 29.3 277 477-786 6-300 (333)
248 1q7f_A NHL, brain tumor CG1071 99.5 1.2E-12 4.3E-17 155.5 30.6 244 473-754 26-281 (286)
249 1q7f_A NHL, brain tumor CG1071 99.5 2E-12 6.9E-17 153.7 32.1 245 516-799 27-283 (286)
250 2dg1_A DRP35, lactonase; beta 99.5 9.2E-13 3.1E-17 160.3 28.8 276 519-836 6-301 (333)
251 2gop_A Trilobed protease; beta 99.5 2.1E-12 7.2E-17 157.9 32.0 258 477-795 15-330 (347)
252 3fvz_A Peptidyl-glycine alpha- 99.5 1.5E-12 5.3E-17 158.7 30.2 254 476-752 23-321 (329)
253 3azo_A Aminopeptidase; POP fam 99.5 4.5E-13 1.6E-17 179.5 27.5 295 513-847 18-371 (662)
254 2z2n_A Virginiamycin B lyase; 99.5 3E-11 1E-15 143.7 39.9 285 471-797 9-296 (299)
255 3fvz_A Peptidyl-glycine alpha- 99.5 2.2E-12 7.5E-17 157.3 30.4 252 518-796 23-322 (329)
256 1qks_A Cytochrome CD1 nitrite 99.5 7.3E-12 2.5E-16 163.1 35.7 321 528-890 165-548 (567)
257 2gop_A Trilobed protease; beta 99.5 2.9E-12 9.9E-17 156.6 29.7 259 519-844 15-330 (347)
258 2xdw_A Prolyl endopeptidase; a 99.5 6.3E-12 2.2E-16 169.9 34.2 282 486-798 81-416 (710)
259 3e5z_A Putative gluconolactona 99.5 9.8E-12 3.3E-16 148.8 30.3 245 471-757 22-290 (296)
260 2z2n_A Virginiamycin B lyase; 99.4 2.7E-10 9.2E-15 135.4 40.0 285 514-846 10-296 (299)
261 2xdw_A Prolyl endopeptidase; a 99.4 6.2E-12 2.1E-16 170.0 27.4 247 474-755 122-416 (710)
262 2bkl_A Prolyl endopeptidase; m 99.4 7.4E-12 2.5E-16 168.8 26.9 277 486-799 77-400 (695)
263 3dsm_A Uncharacterized protein 99.4 4E-11 1.4E-15 146.1 30.8 272 496-806 15-309 (328)
264 3e5z_A Putative gluconolactona 99.4 3.2E-11 1.1E-15 144.3 29.3 254 508-799 17-289 (296)
265 2bkl_A Prolyl endopeptidase; m 99.4 1.6E-11 5.6E-16 165.4 27.0 277 528-847 77-399 (695)
266 3lqh_A Histone-lysine N-methyl 99.4 2.8E-13 9.4E-18 146.5 7.3 96 117-224 75-170 (183)
267 2qc5_A Streptogramin B lactona 99.4 7.5E-10 2.6E-14 131.6 37.4 281 472-794 15-298 (300)
268 3dsm_A Uncharacterized protein 99.4 1.2E-10 4E-15 142.0 30.0 246 477-762 44-310 (328)
269 1rwi_B Serine/threonine-protei 99.4 3.8E-11 1.3E-15 141.0 24.5 241 478-755 25-266 (270)
270 3sjl_D Methylamine dehydrogena 99.3 2E-10 6.7E-15 140.8 30.2 306 482-825 38-384 (386)
271 1rwi_B Serine/threonine-protei 99.3 7.8E-11 2.7E-15 138.3 25.9 242 520-799 25-267 (270)
272 2mad_H Methylamine dehydrogena 99.3 7.8E-10 2.7E-14 137.0 36.0 285 484-799 28-353 (373)
273 1yr2_A Prolyl oligopeptidase; 99.3 8.8E-11 3E-15 159.5 27.4 279 486-799 116-444 (741)
274 3no2_A Uncharacterized protein 99.3 2.9E-10 9.8E-15 134.9 28.0 225 487-740 4-231 (276)
275 2qc5_A Streptogramin B lactona 99.3 3.8E-09 1.3E-13 125.4 37.1 280 516-843 17-298 (300)
276 3no2_A Uncharacterized protein 99.3 5.5E-10 1.9E-14 132.4 27.0 214 529-784 4-231 (276)
277 3sjl_D Methylamine dehydrogena 99.3 6.2E-10 2.1E-14 136.4 27.2 299 524-861 38-384 (386)
278 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.2E-09 4.1E-14 131.2 29.3 245 473-753 14-299 (314)
279 3lqh_A Histone-lysine N-methyl 99.2 4.4E-12 1.5E-16 137.1 6.4 98 1531-1640 74-171 (183)
280 1yr2_A Prolyl oligopeptidase; 99.2 3.5E-10 1.2E-14 153.6 26.2 245 559-847 161-443 (741)
281 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 1.8E-09 6.1E-14 129.6 28.9 251 517-797 16-300 (314)
282 1xip_A Nucleoporin NUP159; bet 99.2 6.9E-10 2.3E-14 136.6 24.7 174 478-682 39-232 (388)
283 3c75_H MADH, methylamine dehyd 99.2 2E-09 6.9E-14 134.3 28.8 289 486-805 82-409 (426)
284 2mad_H Methylamine dehydrogena 99.2 1.9E-08 6.3E-13 124.6 37.0 260 465-760 56-357 (373)
285 3hrp_A Uncharacterized protein 99.2 4E-09 1.4E-13 132.4 30.8 254 476-751 130-408 (409)
286 3q7m_A Lipoprotein YFGL, BAMB; 99.2 4.6E-08 1.6E-12 121.1 38.3 301 488-842 53-375 (376)
287 1kb0_A Quinohemoprotein alcoho 99.2 2.9E-09 9.8E-14 142.3 29.1 329 488-832 77-537 (677)
288 1yiq_A Quinohemoprotein alcoho 99.1 7.4E-09 2.5E-13 138.6 31.2 329 488-831 70-534 (689)
289 3hrp_A Uncharacterized protein 99.1 2.5E-08 8.6E-13 125.2 32.4 255 519-794 131-408 (409)
290 2qe8_A Uncharacterized protein 99.1 2.3E-09 7.8E-14 131.4 21.8 275 477-792 17-317 (343)
291 3g4e_A Regucalcin; six bladed 99.1 5E-08 1.7E-12 116.7 32.2 235 471-741 7-261 (297)
292 3g4e_A Regucalcin; six bladed 99.1 3.9E-08 1.3E-12 117.7 31.2 238 515-784 9-260 (297)
293 3dr2_A Exported gluconolactona 99.1 1.8E-08 6.3E-13 121.0 27.3 236 471-750 39-303 (305)
294 3c75_H MADH, methylamine dehyd 99.0 1.9E-08 6.4E-13 125.5 26.2 286 528-852 82-409 (426)
295 3iuj_A Prolyl endopeptidase; h 99.0 1.1E-08 3.9E-13 137.5 25.0 243 474-756 126-408 (693)
296 2qe8_A Uncharacterized protein 99.0 4E-09 1.4E-13 129.2 18.4 270 519-839 17-315 (343)
297 1xip_A Nucleoporin NUP159; bet 99.0 9.8E-09 3.3E-13 126.4 19.6 179 562-783 39-231 (388)
298 1mda_H Methylamine dehydrogena 99.0 1.9E-08 6.4E-13 123.5 21.4 269 499-806 47-354 (368)
299 2ghs_A AGR_C_1268P; regucalcin 98.9 3.8E-07 1.3E-11 110.7 32.4 227 477-741 49-291 (326)
300 3iuj_A Prolyl endopeptidase; h 98.9 3.5E-08 1.2E-12 132.7 25.5 246 516-799 126-408 (693)
301 1mda_H Methylamine dehydrogena 98.9 2.4E-08 8.2E-13 122.6 21.6 268 463-774 53-366 (368)
302 3q7m_A Lipoprotein YFGL, BAMB; 98.9 9.9E-07 3.4E-11 109.0 36.4 266 487-793 102-375 (376)
303 2ghs_A AGR_C_1268P; regucalcin 98.9 7.1E-07 2.4E-11 108.3 33.4 231 520-784 50-290 (326)
304 3dr2_A Exported gluconolactona 98.9 1.5E-07 5.2E-12 113.0 27.0 241 511-790 37-301 (305)
305 4a2l_A BT_4663, two-component 98.9 8.8E-06 3E-10 111.2 47.1 333 475-847 213-573 (795)
306 3hxj_A Pyrrolo-quinoline quino 98.9 1.4E-08 4.9E-13 122.6 15.2 302 481-846 24-325 (330)
307 1kb0_A Quinohemoprotein alcoho 98.8 1.3E-07 4.3E-12 126.5 25.2 265 487-781 127-535 (677)
308 1yiq_A Quinohemoprotein alcoho 98.8 3E-07 1E-11 123.0 28.7 302 530-866 70-533 (689)
309 4a2l_A BT_4663, two-component 98.8 8.9E-06 3.1E-10 111.1 43.7 336 479-847 175-528 (795)
310 2hz6_A Endoplasmic reticulum t 98.8 2E-10 6.9E-15 142.3 -3.9 260 529-845 8-279 (369)
311 1kv9_A Type II quinohemoprotei 98.8 8.4E-07 2.9E-11 118.4 29.4 308 488-806 66-496 (668)
312 1fwx_A Nitrous oxide reductase 98.7 1.8E-07 6E-12 119.1 19.1 286 491-834 18-407 (595)
313 3v9f_A Two-component system se 98.7 5E-05 1.7E-09 103.5 43.1 333 477-847 211-570 (781)
314 2hz6_A Endoplasmic reticulum t 98.7 6.7E-09 2.3E-13 128.6 3.8 262 487-796 8-279 (369)
315 3v9f_A Two-component system se 98.6 7.6E-05 2.6E-09 101.7 43.4 359 476-879 257-655 (781)
316 1w6s_A Methanol dehydrogenase 98.6 1.7E-05 5.9E-10 103.5 34.5 309 488-806 62-511 (599)
317 2ece_A 462AA long hypothetical 98.6 1E-05 3.5E-10 99.7 30.2 242 525-784 88-399 (462)
318 3hxj_A Pyrrolo-quinoline quino 98.6 3.7E-07 1.3E-11 110.2 17.2 267 475-796 58-324 (330)
319 2ece_A 462AA long hypothetical 98.6 1E-05 3.6E-10 99.6 29.4 243 481-740 86-399 (462)
320 1flg_A Protein (quinoprotein e 98.6 2.9E-05 9.8E-10 101.6 34.3 328 488-830 68-544 (582)
321 2ad6_A Methanol dehydrogenase 98.6 1.1E-05 3.9E-10 105.3 30.4 306 488-806 62-502 (571)
322 1fwx_A Nitrous oxide reductase 98.5 2.8E-06 9.4E-11 108.2 19.7 270 486-799 99-434 (595)
323 1npe_A Nidogen, entactin; glyc 98.4 8.9E-05 3.1E-09 86.7 31.0 248 489-774 2-260 (267)
324 1kv9_A Type II quinohemoprotei 98.4 1.2E-05 4.1E-10 107.3 25.5 288 530-852 66-495 (668)
325 1npe_A Nidogen, entactin; glyc 98.4 0.0001 3.5E-09 86.2 30.4 252 532-827 3-263 (267)
326 2ad6_A Methanol dehydrogenase 98.3 0.0001 3.4E-09 96.3 27.9 289 530-853 62-502 (571)
327 2iwa_A Glutamine cyclotransfer 98.2 0.00023 7.9E-09 82.7 26.0 209 467-695 10-238 (266)
328 2p4o_A Hypothetical protein; p 98.2 0.001 3.5E-08 79.5 32.1 248 467-741 23-277 (306)
329 2fp8_A Strictosidine synthase; 98.1 0.00049 1.7E-08 82.9 28.8 244 472-752 14-312 (322)
330 1w6s_A Methanol dehydrogenase 98.1 0.00025 8.6E-09 92.6 27.6 294 530-852 62-510 (599)
331 4a0p_A LRP6, LRP-6, low-densit 98.1 0.063 2.1E-06 70.6 48.6 343 475-846 35-466 (628)
332 1k3i_A Galactose oxidase precu 98.1 3E-05 1E-09 103.5 17.3 278 481-785 190-530 (656)
333 1flg_A Protein (quinoprotein e 98.1 0.0019 6.4E-08 84.4 33.9 306 531-866 69-544 (582)
334 2fp8_A Strictosidine synthase; 98.0 0.0008 2.7E-08 80.9 27.4 254 561-845 19-313 (322)
335 3nol_A Glutamine cyclotransfer 98.0 0.00043 1.5E-08 79.6 23.1 197 466-683 31-244 (262)
336 2p4o_A Hypothetical protein; p 98.0 0.0017 5.9E-08 77.5 29.3 248 552-836 24-279 (306)
337 1k3i_A Galactose oxidase precu 98.0 0.00024 8.2E-09 94.6 23.1 279 523-834 190-530 (656)
338 2iwa_A Glutamine cyclotransfer 97.9 0.00018 6.3E-09 83.6 18.7 193 665-880 22-237 (266)
339 3v64_C Agrin; beta propeller, 97.9 0.006 2E-07 74.4 32.9 240 521-799 36-278 (349)
340 2xbg_A YCF48-like protein; pho 97.9 0.011 3.7E-07 71.4 34.5 277 518-843 35-320 (327)
341 3tc9_A Hypothetical hydrolase; 97.9 0.0021 7.2E-08 80.8 28.8 257 477-751 137-428 (430)
342 4hw6_A Hypothetical protein, I 97.9 0.0038 1.3E-07 78.5 30.8 258 477-751 139-431 (433)
343 3s94_A LRP-6, low-density lipo 97.9 0.077 2.6E-06 69.6 44.3 334 476-846 83-468 (619)
344 3v64_C Agrin; beta propeller, 97.9 0.0046 1.6E-07 75.4 30.5 247 477-762 34-284 (349)
345 2xbg_A YCF48-like protein; pho 97.9 0.015 5.1E-07 70.1 34.4 275 476-794 35-320 (327)
346 2xe4_A Oligopeptidase B; hydro 97.9 0.0013 4.3E-08 89.1 27.6 251 516-799 170-461 (751)
347 3nol_A Glutamine cyclotransfer 97.8 0.00042 1.4E-08 79.6 18.8 163 666-853 45-209 (262)
348 2xe4_A Oligopeptidase B; hydro 97.8 0.00097 3.3E-08 90.2 24.7 198 474-691 170-395 (751)
349 3ei3_A DNA damage-binding prot 97.8 0.039 1.3E-06 77.3 41.3 325 478-847 515-915 (1158)
350 3v65_B Low-density lipoprotein 97.8 0.0061 2.1E-07 75.4 29.4 239 522-799 80-321 (386)
351 3s94_A LRP-6, low-density lipo 97.8 0.03 1E-06 73.5 37.4 343 475-846 38-424 (619)
352 3ei3_A DNA damage-binding prot 97.8 0.029 9.9E-07 78.6 39.0 322 476-844 553-954 (1158)
353 3mbr_X Glutamine cyclotransfer 97.8 0.0043 1.5E-07 70.7 25.3 196 467-683 10-223 (243)
354 3v65_B Low-density lipoprotein 97.8 0.0073 2.5E-07 74.7 29.7 254 479-771 79-336 (386)
355 3nok_A Glutaminyl cyclase; bet 97.7 0.00096 3.3E-08 76.7 19.4 183 479-683 57-254 (268)
356 1ijq_A LDL receptor, low-densi 97.7 0.031 1.1E-06 66.9 34.0 237 490-762 3-247 (316)
357 3qqz_A Putative uncharacterize 97.7 0.0054 1.8E-07 70.8 25.7 211 470-690 20-249 (255)
358 3qqz_A Putative uncharacterize 97.7 0.015 5.2E-07 67.0 29.1 221 513-751 21-251 (255)
359 3nok_A Glutaminyl cyclase; bet 97.6 0.00079 2.7E-08 77.4 16.7 164 665-854 56-219 (268)
360 1ijq_A LDL receptor, low-densi 97.6 0.026 8.7E-07 67.7 30.5 231 586-852 10-245 (316)
361 3tc9_A Hypothetical hydrolase; 97.6 0.014 4.9E-07 73.1 29.0 252 520-794 138-428 (430)
362 3kya_A Putative phosphatase; s 97.6 0.027 9.1E-07 71.1 30.9 275 478-758 140-480 (496)
363 3mbr_X Glutamine cyclotransfer 97.6 0.0043 1.5E-07 70.7 21.5 165 664-853 21-187 (243)
364 4hw6_A Hypothetical protein, I 97.5 0.021 7.1E-07 71.7 29.7 253 520-794 140-431 (433)
365 3sov_A LRP-6, low-density lipo 97.5 0.033 1.1E-06 66.8 30.2 226 539-799 12-241 (318)
366 4a0p_A LRP6, LRP-6, low-densit 97.5 0.55 1.9E-05 61.6 46.1 346 474-846 120-509 (628)
367 3p5b_L Low density lipoprotein 97.5 0.089 3E-06 65.2 34.1 247 489-771 84-338 (400)
368 3p5b_L Low density lipoprotein 97.5 0.08 2.7E-06 65.6 33.3 234 532-799 85-323 (400)
369 3ott_A Two-component system se 97.4 0.69 2.4E-05 62.3 44.0 334 477-847 146-504 (758)
370 3m0c_C LDL receptor, low-densi 97.3 0.05 1.7E-06 73.1 30.5 246 480-762 388-641 (791)
371 3kya_A Putative phosphatase; s 97.3 0.084 2.9E-06 66.6 30.2 263 520-799 140-478 (496)
372 3sov_A LRP-6, low-density lipo 97.2 0.083 2.8E-06 63.3 28.5 229 497-762 12-247 (318)
373 2xzh_A Clathrin heavy chain 1; 97.2 0.43 1.5E-05 56.0 32.1 272 497-799 48-335 (365)
374 3m0c_C LDL receptor, low-densi 97.2 0.1 3.4E-06 70.2 31.3 211 619-852 424-639 (791)
375 3ott_A Two-component system se 97.2 1.1 3.8E-05 60.2 42.0 329 476-847 62-403 (758)
376 3amr_A 3-phytase; beta-propell 97.1 0.05 1.7E-06 65.1 24.4 196 486-693 38-262 (355)
377 2ism_A Putative oxidoreductase 97.0 0.26 8.8E-06 59.8 30.4 246 476-741 30-334 (352)
378 2p9w_A MAL S 1 allergenic prot 96.8 0.065 2.2E-06 63.5 21.8 159 479-648 15-214 (334)
379 1bpo_A Protein (clathrin); cla 96.8 1.7 5.6E-05 53.1 36.2 273 497-799 47-334 (494)
380 3amr_A 3-phytase; beta-propell 96.8 0.25 8.7E-06 59.0 26.3 211 529-761 39-272 (355)
381 2p9w_A MAL S 1 allergenic prot 96.7 0.11 3.6E-06 61.7 22.0 174 659-845 8-215 (334)
382 3a9g_A Putative uncharacterize 96.6 0.85 2.9E-05 55.3 30.2 244 560-833 28-330 (354)
383 2xzh_A Clathrin heavy chain 1; 96.5 1.9 6.5E-05 50.7 32.0 263 540-850 49-337 (365)
384 3a9g_A Putative uncharacterize 96.5 0.7 2.4E-05 56.0 28.7 239 476-739 28-329 (354)
385 1n7d_A LDL receptor, low-densi 96.5 0.0048 1.7E-07 82.4 10.2 213 619-853 406-622 (699)
386 1n7d_A LDL receptor, low-densi 96.5 0.01 3.5E-07 79.3 13.0 228 539-799 385-617 (699)
387 1bpo_A Protein (clathrin); cla 96.4 2.8 9.6E-05 51.1 31.9 262 539-848 47-334 (494)
388 2ism_A Putative oxidoreductase 96.3 1.1 3.6E-05 54.4 28.4 243 560-834 30-334 (352)
389 1cru_A Protein (soluble quinop 96.2 1.2 4.2E-05 55.8 29.3 104 476-583 26-162 (454)
390 2g8s_A Glucose/sorbosone dehyd 96.2 1.2 4E-05 54.0 28.3 250 477-746 18-347 (353)
391 2vpj_A Kelch-like protein 12; 96.1 0.25 8.4E-06 58.2 21.4 190 488-700 15-237 (301)
392 3das_A Putative oxidoreductase 96.1 1.7 5.8E-05 52.2 28.6 266 513-784 26-326 (347)
393 3sre_A PON1, serum paraoxonase 95.9 0.74 2.5E-05 55.6 24.2 193 479-691 52-295 (355)
394 1cru_A Protein (soluble quinop 95.9 5.6 0.00019 49.7 34.5 116 518-637 26-162 (454)
395 3ii7_A Kelch-like protein 7; p 95.8 0.29 1E-05 57.7 20.1 228 489-755 13-274 (306)
396 2g8s_A Glucose/sorbosone dehyd 95.8 2.2 7.4E-05 51.6 28.1 71 765-839 271-348 (353)
397 2xn4_A Kelch-like protein 2; s 95.8 0.34 1.2E-05 57.1 20.4 189 489-700 17-235 (302)
398 3pbp_A Nucleoporin NUP82; beta 95.7 0.42 1.4E-05 58.3 20.4 156 485-645 29-208 (452)
399 2vpj_A Kelch-like protein 12; 95.7 0.23 7.7E-06 58.5 18.4 191 487-700 62-284 (301)
400 3das_A Putative oxidoreductase 95.6 3.5 0.00012 49.5 28.5 261 555-833 26-326 (347)
401 3ii7_A Kelch-like protein 7; p 95.6 0.4 1.4E-05 56.5 20.1 191 487-700 55-278 (306)
402 3sre_A PON1, serum paraoxonase 95.3 0.95 3.2E-05 54.7 22.1 193 621-834 52-286 (355)
403 2xn4_A Kelch-like protein 2; s 95.3 0.58 2E-05 55.0 20.2 191 487-700 61-282 (302)
404 1zgk_A Kelch-like ECH-associat 95.2 0.82 2.8E-05 54.0 21.0 191 487-700 24-246 (308)
405 1zgk_A Kelch-like ECH-associat 95.1 0.5 1.7E-05 55.8 18.8 191 487-700 70-293 (308)
406 4asc_A Kelch repeat and BTB do 94.8 1.5 5.3E-05 51.7 21.8 188 490-700 7-227 (315)
407 3sbq_A Nitrous-oxide reductase 94.7 9.5 0.00033 47.9 28.4 273 491-784 73-453 (638)
408 1xi4_A Clathrin heavy chain; a 94.7 1.3 4.3E-05 61.6 22.4 273 497-798 47-333 (1630)
409 1xi4_A Clathrin heavy chain; a 94.5 1.6 5.4E-05 60.6 22.9 270 540-852 48-338 (1630)
410 2be1_A Serine/threonine-protei 94.4 0.3 1E-05 58.5 14.2 202 488-697 10-234 (339)
411 1tl2_A L10, protein (tachylect 94.3 1.6 5.6E-05 48.4 18.5 157 664-839 41-204 (236)
412 4asc_A Kelch repeat and BTB do 94.2 1.3 4.4E-05 52.4 19.3 195 483-700 41-283 (315)
413 3pbp_A Nucleoporin NUP82; beta 93.8 2.1 7.2E-05 52.2 19.7 159 526-690 28-208 (452)
414 2woz_A Kelch repeat and BTB do 93.6 2.3 7.7E-05 50.3 19.9 107 674-799 109-234 (318)
415 2wg3_C Hedgehog-interacting pr 92.9 25 0.00086 43.9 30.9 121 561-685 14-160 (463)
416 2uvk_A YJHT; unknown function, 92.7 1.8 6.2E-05 52.1 17.4 63 487-551 19-97 (357)
417 2zwa_A Leucine carboxyl methyl 92.3 2.7 9.1E-05 55.9 19.7 202 486-699 396-640 (695)
418 2woz_A Kelch repeat and BTB do 92.2 3.6 0.00012 48.5 18.8 194 484-700 53-293 (318)
419 1tl2_A L10, protein (tachylect 92.0 0.69 2.4E-05 51.4 10.9 109 723-841 42-159 (236)
420 2uvk_A YJHT; unknown function, 91.3 4.1 0.00014 48.9 18.2 52 745-799 286-345 (357)
421 3b7f_A Glycosyl hydrolase, BNR 90.9 34 0.0012 41.4 30.7 238 531-783 23-296 (394)
422 3kci_A Probable E3 ubiquitin-p 90.6 37 0.0013 41.2 31.2 254 577-846 63-346 (389)
423 2jns_A Bromodomain-containing 89.5 0.3 1E-05 46.4 4.5 39 278-320 10-48 (90)
424 2be1_A Serine/threonine-protei 89.2 9.8 0.00033 45.4 18.5 109 531-648 11-129 (339)
425 3sbq_A Nitrous-oxide reductase 88.5 15 0.00053 46.1 19.6 72 723-796 324-408 (638)
426 2zwa_A Leucine carboxyl methyl 88.2 8.6 0.00029 50.9 19.1 153 628-798 396-579 (695)
427 3q6k_A 43.2 kDa salivary prote 86.2 66 0.0023 38.8 24.8 172 475-649 85-306 (381)
428 3qhy_B Beta-lactamase inhibito 85.7 37 0.0013 39.2 20.5 225 520-799 25-249 (282)
429 3b7f_A Glycosyl hydrolase, BNR 85.4 72 0.0025 38.5 30.2 195 489-691 23-259 (394)
430 4gq2_M Nucleoporin NUP120; bet 85.3 1.1E+02 0.0036 42.0 27.8 40 721-761 235-274 (950)
431 2wg3_C Hedgehog-interacting pr 84.4 91 0.0031 38.8 30.5 53 519-571 14-79 (463)
432 3s25_A Hypothetical 7-bladed b 81.6 86 0.003 36.5 28.8 177 624-844 109-292 (302)
433 2xtc_A F-box-like/WD repeat-co 81.4 1 3.5E-05 42.2 3.6 55 306-379 5-59 (90)
434 4hvt_A Ritya.17583.B, post-pro 80.8 1.1E+02 0.0038 40.3 24.3 237 484-752 137-429 (711)
435 4hvt_A Ritya.17583.B, post-pro 80.8 1.5E+02 0.0053 38.9 27.9 73 721-795 349-429 (711)
436 4gq2_M Nucleoporin NUP120; bet 78.3 1.3E+02 0.0044 41.2 24.5 37 665-701 237-273 (950)
437 3s25_A Hypothetical 7-bladed b 78.1 1.1E+02 0.0038 35.6 27.9 208 487-753 24-255 (302)
438 1suu_A DNA gyrase subunit A; t 76.8 1.2E+02 0.0041 35.5 29.4 210 528-752 6-230 (312)
439 3p8d_A Medulloblastoma antigen 76.6 2 6.9E-05 38.0 3.8 51 1279-1334 5-56 (67)
440 3kci_A Probable E3 ubiquitin-p 75.2 1.5E+02 0.0051 35.7 29.3 194 488-692 62-291 (389)
441 3qii_A PHD finger protein 20; 74.5 2.4 8.1E-05 39.3 3.8 53 1277-1334 18-71 (85)
442 2equ_A PHD finger protein 20-l 73.5 3 0.0001 37.9 4.2 52 1278-1334 7-59 (74)
443 3s6w_A Tudor domain-containing 73.1 3.4 0.00011 35.1 4.2 44 1280-1327 1-47 (54)
444 4d9s_A UVB-resistance protein 72.8 1.7E+02 0.0059 35.4 35.9 200 477-693 16-252 (406)
445 3qhy_B Beta-lactamase inhibito 71.2 1.5E+02 0.0052 34.0 24.9 228 561-850 24-251 (282)
446 3uc1_A DNA gyrase subunit A; D 71.0 1.7E+02 0.0058 34.5 25.6 249 576-845 3-279 (327)
447 2cn3_A Xyloglucanase, beta-1,4 70.2 2.8E+02 0.0094 36.6 33.0 105 477-585 23-153 (737)
448 3l6v_A GYRA, DNA gyrase subuni 70.2 1.9E+02 0.0065 34.7 30.6 160 527-693 4-179 (370)
449 1zi0_A DNA gyrase subunit A; b 67.9 1.9E+02 0.0064 33.7 31.5 251 529-796 2-277 (307)
450 3q6k_A 43.2 kDa salivary prote 67.3 2.2E+02 0.0074 34.3 23.0 109 722-832 220-341 (381)
451 1mhn_A SurviVal motor neuron p 66.7 4.5 0.00015 35.0 3.7 52 1279-1334 2-56 (59)
452 3no0_A DNA gyrase subunit A; D 65.8 1.9E+02 0.0065 33.1 23.6 206 477-693 24-245 (276)
453 3pnw_C Tudor domain-containing 63.8 6.6 0.00023 36.0 4.4 52 1279-1334 16-70 (77)
454 1g5v_A SurviVal motor neuron p 63.1 5.3 0.00018 37.6 3.7 53 1278-1334 8-63 (88)
455 4fhn_B Nucleoporin NUP120; pro 62.9 69 0.0023 44.9 16.7 39 722-761 238-276 (1139)
456 4a4f_A SurviVal of motor neuro 62.1 5.9 0.0002 34.9 3.6 53 1278-1334 6-61 (64)
457 3uc1_A DNA gyrase subunit A; D 60.6 2.6E+02 0.0088 32.9 28.4 252 531-796 4-279 (327)
458 2ldm_A Uncharacterized protein 63.8 1.9 6.7E-05 39.6 0.0 51 1279-1334 5-56 (81)
459 3of7_A Regulator of chromosome 58.0 3.4E+02 0.012 33.5 25.5 69 620-693 205-284 (473)
460 3l6v_A GYRA, DNA gyrase subuni 57.4 3.1E+02 0.011 32.8 28.4 200 485-694 4-265 (370)
461 1wp5_A Topoisomerase IV; broke 55.9 3E+02 0.01 32.2 27.8 251 528-796 3-277 (323)
462 1sqj_A OXG-RCBH, oligoxylogluc 55.2 4.9E+02 0.017 34.5 35.5 152 476-639 14-190 (789)
463 4d9s_A UVB-resistance protein 53.9 3.6E+02 0.012 32.5 37.2 302 519-846 16-358 (406)
464 3no0_A DNA gyrase subunit A; D 53.7 3E+02 0.01 31.4 22.5 206 619-845 24-246 (276)
465 1suu_A DNA gyrase subunit A; t 50.0 3.6E+02 0.012 31.3 29.1 199 486-694 6-231 (312)
466 1wp5_A Topoisomerase IV; broke 47.0 4.1E+02 0.014 31.1 25.1 200 486-694 3-225 (323)
467 1zi0_A DNA gyrase subunit A; b 42.7 4.5E+02 0.015 30.4 28.8 198 486-693 1-225 (307)
468 2d9t_A Tudor domain-containing 41.8 22 0.00074 32.6 4.0 52 1279-1334 8-62 (78)
469 2xk0_A Polycomb protein PCL; t 38.1 53 0.0018 28.9 5.4 37 1279-1321 14-51 (69)
470 4fhn_B Nucleoporin NUP120; pro 37.7 43 0.0015 47.0 8.1 38 520-557 239-276 (1139)
471 3khx_A Putative dipeptidase sa 35.8 10 0.00035 47.9 1.2 71 872-953 104-187 (492)
472 1sqj_A OXG-RCBH, oligoxylogluc 35.3 9.2E+02 0.031 31.8 26.6 158 518-684 14-190 (789)
473 2cn3_A Xyloglucanase, beta-1,4 34.0 9.2E+02 0.031 31.5 26.9 53 519-572 23-83 (737)
474 3fdr_A Tudor and KH domain-con 31.9 40 0.0014 31.9 4.4 51 1279-1334 26-79 (94)
475 3h8z_A FragIle X mental retard 31.8 58 0.002 32.8 5.6 71 1250-1327 27-110 (128)
476 1q7l_A Aminoacylase-1; catalys 30.2 17 0.00058 39.7 1.6 70 872-951 77-161 (198)
477 2a7y_A Hypothetical protein RV 29.2 34 0.0012 31.2 3.0 45 1281-1327 6-54 (83)
478 3mvd_K Regulator of chromosome 27.2 8.7E+02 0.03 29.0 36.8 268 561-846 75-375 (423)
479 3f7f_A Nucleoporin NUP120; nuc 25.8 73 0.0025 41.6 6.5 38 477-516 222-259 (729)
480 3zwu_A Alkaline phosphatase PH 25.6 1.4E+02 0.0048 38.3 9.0 59 478-536 477-548 (592)
481 3mvd_K Regulator of chromosome 25.2 9.4E+02 0.032 28.7 34.2 200 477-692 75-320 (423)
482 3zwu_A Alkaline phosphatase PH 24.9 9E+02 0.031 30.7 16.3 61 722-783 476-548 (592)
483 4a9v_A PHOX; hydrolase, beta-p 24.9 1.1E+03 0.039 29.7 16.8 62 721-783 475-548 (592)
484 4a9v_A PHOX; hydrolase, beta-p 22.7 1.9E+02 0.0064 36.8 9.1 61 477-537 476-549 (592)
485 3mez_A Mannose-specific lectin 21.1 3.1E+02 0.01 26.5 8.6 49 819-868 53-101 (111)
486 3f7f_A Nucleoporin NUP120; nuc 21.0 2.8E+02 0.0096 36.2 10.4 38 722-762 222-259 (729)
487 2eqk_A Tudor domain-containing 20.3 79 0.0027 29.3 3.7 27 1279-1305 20-48 (85)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.6e-42 Score=455.11 Aligned_cols=401 Identities=15% Similarity=0.141 Sum_probs=316.8
Q ss_pred CCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC--cEEEEEeCCCCCEEEEEEeCC
Q psy9598 452 LSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG--KLLATLRGCSGEISDIAIDNR 529 (1915)
Q Consensus 452 ~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg--~~~~~l~gH~~~I~~Lafspd 529 (1915)
.++.+.+|... .......|.||.+.|+|++|+|+|++||+|+.||+|+|||+.++ .+..++.+|.+.|.+|+|+|+
T Consensus 37 ~~~~v~l~~~~--~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 37 NGTSVYTVPVG--SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 114 (611)
T ss_dssp ETTEEEEEETT--CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT
T ss_pred CCCEEEEecCC--CcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCC
Confidence 35688888654 33455688999999999999999999999999999999999754 456788999999999999999
Q ss_pred CCEEEEEeCC----CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc
Q psy9598 530 NILLAAGTVD----KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 605 (1915)
Q Consensus 530 g~~LaSgs~D----gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~ 605 (1915)
+++|++++.+ +.|++|| ++..+..+.+|...|++++|+|++ ...|++|+.|++|++||..++...
T Consensus 115 g~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~---~~~l~s~s~D~~v~lwd~~~~~~~------ 183 (611)
T 1nr0_A 115 SKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSR---PFRIISGSDDNTVAIFEGPPFKFK------ 183 (611)
T ss_dssp SCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSS---SCEEEEEETTSCEEEEETTTBEEE------
T ss_pred CCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCC---CeEEEEEeCCCeEEEEECCCCeEe------
Confidence 9999999865 3677776 567778899999999999999953 247999999999999997765322
Q ss_pred CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec-------cCCCCeeEEEEcCCCCEE
Q psy9598 606 EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE-------EHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~-------~h~~~V~sl~fspdg~~L 678 (1915)
..+.+|...|.+++|+|+|.+|++|+.|++|+|||+.. ...+..+. +|.+.|.+++|+|+|.+|
T Consensus 184 ------~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~---g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 254 (611)
T 1nr0_A 184 ------STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD---GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254 (611)
T ss_dssp ------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred ------eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC---CcEeeeeccccccccccCCCEEEEEECCCCCEE
Confidence 22346788999999999999999999999999999843 33444452 799999999999999999
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccC---------------------------CCCccccccccccccEEEEEECC
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCL---------------------------PHTKETSDETNKKIKVTMVAWDA 731 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~V~~va~sp 731 (1915)
++|+.|++|+|||+.++++........... ..........+|...|++++|+|
T Consensus 255 ~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp 334 (611)
T 1nr0_A 255 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334 (611)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC
Confidence 999999999999999887654321100000 00001122346888999999999
Q ss_pred CCCEEEEEEecCCeEEEEECCCCceEEEe-eC------------------------------------------------
Q psy9598 732 SDRWVITAINFNFQIKIWDAFNGDLVQVL-KG------------------------------------------------ 762 (1915)
Q Consensus 732 dg~~L~t~s~~Dg~I~vwD~~tg~~i~~l-~g------------------------------------------------ 762 (1915)
+|.+|++++. |+.|++||+.++.+...+ .+
T Consensus 335 dg~~l~s~s~-D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 413 (611)
T 1nr0_A 335 DGKTLFSADA-EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 413 (611)
T ss_dssp TSSEEEEEET-TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred CCCEEEEEeC-CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCC
Confidence 9999999998 999999999876554332 11
Q ss_pred ---------------------------------CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeee
Q psy9598 763 ---------------------------------HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIV 809 (1915)
Q Consensus 763 ---------------------------------H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~ 809 (1915)
|...+.+++|+| ++.+|++|+.||+|+|||+.++.. . .+. .
T Consensus 414 ~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~--~-~~~--~ 487 (611)
T 1nr0_A 414 PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV--S-EVK--T 487 (611)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE--E-EEE--E
T ss_pred CcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCce--e-eee--c
Confidence 234467889999 999999999999999999977543 1 111 1
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cccccc--C------CCceeecCCCCeeeecC-CCccceeecc
Q psy9598 810 EGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG-FKRPQN--I------PRELFFHTDYRTLNRPN-GLFEPTYDEV 879 (1915)
Q Consensus 810 ~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s-~~~~~~--l------~~~~~F~~d~~~Lv~~~-~~~~~v~D~~ 879 (1915)
..|.+.|.+++|+|||.+||+++.|+.|++|++.+ ++.... . ...+.|++|++.|+..+ .+.+.+||+.
T Consensus 488 -~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 488 -IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp -EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred -cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence 24668899999999999999999999999999987 544332 1 12688999999998554 4557899987
Q ss_pred cCC
Q psy9598 880 TNL 882 (1915)
Q Consensus 880 t~~ 882 (1915)
++.
T Consensus 567 ~~~ 569 (611)
T 1nr0_A 567 KPS 569 (611)
T ss_dssp CTT
T ss_pred Ccc
Confidence 653
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.1e-41 Score=448.09 Aligned_cols=414 Identities=13% Similarity=0.120 Sum_probs=325.4
Q ss_pred CccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECC----CcEEEEECCCCcEEEEEeCCCCC
Q psy9598 445 SREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADD----LLIKLWRARDGKLLATLRGCSGE 520 (1915)
Q Consensus 445 ~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~D----g~I~IWd~~tg~~~~~l~gH~~~ 520 (1915)
...++|+.++++.+|+...........+.+|.+.|++|+|+|+|++||+++.+ +.|++|| ++..+.++.+|...
T Consensus 72 ~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~ 149 (611)
T 1nr0_A 72 YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA 149 (611)
T ss_dssp SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred cEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence 34668899999999987544444556788999999999999999999999875 3677777 57777889999999
Q ss_pred EEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccc
Q psy9598 521 ISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI 599 (1915)
Q Consensus 521 I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~ 599 (1915)
|++++|+|++. +|++|+.|++|++||..+++++..+.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++..+
T Consensus 150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd----g~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD----GSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCCEE
T ss_pred ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC----CCEEEEEECCCcEEEEECCCCcEe
Confidence 99999999986 6999999999999999999999999999999999999994 589999999999999999887643
Q ss_pred cceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC---------------------------
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS--------------------------- 652 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~--------------------------- 652 (1915)
..+... .....+|...|.+++|+|+|.+|++|+.|++|+|||+.....
T Consensus 226 ~~~~~~-----~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 300 (611)
T 1nr0_A 226 GVFEDD-----SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 300 (611)
T ss_dssp EECBCT-----TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred eeeccc-----cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEE
Confidence 322110 011226788999999999999999999999999999853211
Q ss_pred -------------CceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccc--------------
Q psy9598 653 -------------PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN-------------- 705 (1915)
Q Consensus 653 -------------~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~-------------- 705 (1915)
......+.+|...|.+++|+|+|.+|++|+.||+|++||+.++..........
T Consensus 301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 380 (611)
T 1nr0_A 301 SANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 380 (611)
T ss_dssp ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC
T ss_pred eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCc
Confidence 01223456899999999999999999999999999999998876543210000
Q ss_pred ----------------cc-----------CCCCccc-------------------------cccccccccEEEEEECCCC
Q psy9598 706 ----------------TC-----------LPHTKET-------------------------SDETNKKIKVTMVAWDASD 733 (1915)
Q Consensus 706 ----------------~~-----------~~~~~~~-------------------------~~~~~~~~~V~~va~spdg 733 (1915)
.. ....... .....+...+.+++|+|+|
T Consensus 381 l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg 460 (611)
T 1nr0_A 381 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK 460 (611)
T ss_dssp EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS
T ss_pred EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC
Confidence 00 0000000 0000123567899999999
Q ss_pred CEEEEEEecCCeEEEEECCCCce--EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC-Cccccceeeeeeec
Q psy9598 734 RWVITAINFNFQIKIWDAFNGDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS-SKQRGYKWFHNIVE 810 (1915)
Q Consensus 734 ~~L~t~s~~Dg~I~vwD~~tg~~--i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s-~~~~~~~~~~~~~~ 810 (1915)
++|++++. |+.|++||+.++.+ +.. .+|...|++|+|+| ++.+|++++.|++|++|++.+ ++. ... ...
T Consensus 461 ~~lasgs~-D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~--~~~---~~~ 532 (611)
T 1nr0_A 461 QFVAVGGQ-DSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFEL--AHT---NSW 532 (611)
T ss_dssp CEEEEEET-TSEEEEEEEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEE--SCC---CCC
T ss_pred CEEEEeCC-CCeEEEEEccCCceeeeec-cCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCce--eee---eee
Confidence 99999998 99999999987654 334 68999999999999 999999999999999999987 433 211 012
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc-c-ccCC-------CceeecCCCCeee-ecCCCccceeec
Q psy9598 811 GQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR-P-QNIP-------RELFFHTDYRTLN-RPNGLFEPTYDE 878 (1915)
Q Consensus 811 ~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~-~-~~l~-------~~~~F~~d~~~Lv-~~~~~~~~v~D~ 878 (1915)
+.|.+.|.+++|+|||++||+|+.||.|+||++.++.. . ..+. ..+.|++|+. |+ ....+.+.+||+
T Consensus 533 ~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 533 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred eecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 33678999999999999999999999999999987652 2 2222 2578999998 55 445566789985
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.8e-39 Score=424.08 Aligned_cols=377 Identities=24% Similarity=0.361 Sum_probs=323.7
Q ss_pred ccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEE
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 525 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~La 525 (1915)
..++|+.++.+.+|+.. ......+.+|...|++++|+|+|.+|++|+.||.|++|+. +++++..+.+|...|++++
T Consensus 194 ~l~~~~~d~~v~~w~~~---~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~ 269 (577)
T 2ymu_A 194 TIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVA 269 (577)
T ss_dssp CEEEEETTSEEEEECTT---SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEE
T ss_pred EEEEEcCCCEEEEEeCC---CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEE
Confidence 35678889999999743 3456678999999999999999999999999999999996 6788999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 605 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~ 605 (1915)
|+|++.+|++++.|++|++|+. ++..+..+.+|...|++++|+|+ +.+|++++.||+|++||+.....
T Consensus 270 ~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~----~~~l~t~~~d~~i~~w~~~~~~~------- 337 (577)
T 2ymu_A 270 FRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD----GQTIASASDDKTVKLWNRNGQHL------- 337 (577)
T ss_dssp ECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTSCEE-------
T ss_pred EcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC----CCEEEEEeCCCeEEEEeCCCCee-------
Confidence 9999999999999999999996 46788899999999999999994 58999999999999999765421
Q ss_pred CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC
Q psy9598 606 EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG 685 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG 685 (1915)
..+..|...|.+++|+|+|.+|++|+.||.|++|+.. ...+..+.+|...|.+++|+|+|.+|++++.||
T Consensus 338 ------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 338 ------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp ------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----CCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred ------EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC----CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Confidence 1223567889999999999999999999999999962 345677889999999999999999999999999
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
.|++||... +... ....|...|++++|+|++.+|++++. |+.|++||. +++++..+.+|..
T Consensus 408 ~v~~~~~~~-~~~~----------------~~~~~~~~v~~~~~s~d~~~l~~~~~-d~~v~~w~~-~~~~~~~~~~~~~ 468 (577)
T 2ymu_A 408 TVKLWNRNG-QLLQ----------------TLTGHSSSVWGVAFSPDDQTIASASD-DKTVKLWNR-NGQLLQTLTGHSS 468 (577)
T ss_dssp EEEEECTTC-CEEE----------------EEECCSSCEEEEEECTTSSEEEEEET-TSEEEEEET-TSCEEEEEECCSS
T ss_pred EEEEEeCCC-CEEE----------------EecCCCCCeEEEEECCCCCEEEEEcC-CCEEEEEEC-CCCEEEEEcCCCC
Confidence 999999643 3221 12346778999999999999999998 999999996 6788999999999
Q ss_pred CeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 766 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
.|++++|+| ++.+|++++.||+|+|||. +++. +..+. .|.+.|++++|+|||++||+++.||.|+||++.
T Consensus 469 ~v~~~~~sp-d~~~las~~~d~~i~iw~~-~~~~--~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~- 538 (577)
T 2ymu_A 469 SVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQL--LQTLT-----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 538 (577)
T ss_dssp CEEEEEECT-TSCEEEEEETTSEEEEEET-TSCE--EEEEE-----CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-
T ss_pred CEEEEEEcC-CCCEEEEEeCCCEEEEEcC-CCCE--EEEEe-----CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-
Confidence 999999999 9999999999999999996 4555 55554 466899999999999999999999999999974
Q ss_pred CcccccCCC------ceeecCCCCeeeecC-CCccceee
Q psy9598 846 FKRPQNIPR------ELFFHTDYRTLNRPN-GLFEPTYD 877 (1915)
Q Consensus 846 ~~~~~~l~~------~~~F~~d~~~Lv~~~-~~~~~v~D 877 (1915)
++++..+.. .+.|++|++.|+..+ .+.+.+||
T Consensus 539 ~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 539 GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 555554433 588999999988544 34466886
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-39 Score=427.76 Aligned_cols=403 Identities=23% Similarity=0.375 Sum_probs=322.1
Q ss_pred eeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
+..++|.||.+.|+||+|+|||++||||+.|++|+|||. +++++.+|.+|.+.|++|+|+|++++||+|+.|++|+|||
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 345679999999999999999999999999999999995 8899999999999999999999999999999999999999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccce---------ecc------------
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT---------VFH------------ 605 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~---------~~~------------ 605 (1915)
+ ++.++..+.+|.+.|.+++|+|+ +.+|++++.|+.+++|+.......... .+.
T Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~s~d----~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (577)
T 2ymu_A 86 R-NGQLLQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred C-CCCEEEEEECCCCCEEEEEECCC----CCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccc
Confidence 6 57889999999999999999994 589999999999999997543211100 000
Q ss_pred -------CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE
Q psy9598 606 -------EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 606 -------~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L 678 (1915)
...........+...|.++.|+|++.+|++|+.||.|++|+.. ...+..+.+|...|.+++|+|++.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l 236 (577)
T 2ymu_A 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTI 236 (577)
T ss_dssp SEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----SCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred cceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC----CcEEEEEecCCCCEEEEEECCCCCEE
Confidence 0001112234567889999999999999999999999999962 34567788999999999999999999
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
++++.||.|++||..... .. ....|...|.+++|+|++.+|++++. |+.|++|+. +++++.
T Consensus 237 ~~~~~d~~i~~w~~~~~~-~~----------------~~~~~~~~v~~v~~~~d~~~l~~~~~-d~~i~~w~~-~~~~~~ 297 (577)
T 2ymu_A 237 ASASDDKTVKLWNRNGQL-LQ----------------TLTGHSSSVNGVAFRPDGQTIASASD-DKTVKLWNR-NGQLLQ 297 (577)
T ss_dssp EEEETTSCEEEECTTSCE-EE----------------EECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEET-TSCEEE
T ss_pred EEEeCCCEEEEEeCCCCE-EE----------------EEecCCCCEEEEEEcCCCCEEEEEeC-CCEEEEEeC-CCcEEE
Confidence 999999999999865322 11 12346778999999999999999998 999999996 578889
Q ss_pred EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy9598 759 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHL 838 (1915)
Q Consensus 759 ~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I 838 (1915)
.+.+|...|++++|+| ++.+|++++.||+|++||+..... ..+. .+...|.+++|+|+|.+||+++.+|.|
T Consensus 298 ~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~~---~~~~-----~~~~~v~~~~~s~~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 298 TLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHL---QTLT-----GHSSSVWGVAFSPDGQTIASASDDKTV 368 (577)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEE---EEEC-----CCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCee---EEEe-----CCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 9999999999999999 999999999999999999865433 2222 456789999999999999999999999
Q ss_pred EEEeCCCCcccccCC------CceeecCCCCeeeec-CCCccceeecccCCCCCcCCCCcccCCCCCCCCCCCcccccC
Q psy9598 839 LVYGLGGFKRPQNIP------RELFFHTDYRTLNRP-NGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEVQRLVPG 910 (1915)
Q Consensus 839 ~Iwdl~s~~~~~~l~------~~~~F~~d~~~Lv~~-~~~~~~v~D~~t~~~p~~~~~pfl~~~~G~~ypp~~Q~lv~G 910 (1915)
++|+... ..+..+. ..+.|++|++.|+.. ..+.+.+||.... ....+..+ .-.+.+..|+|+.+.|+.|
T Consensus 369 ~~~~~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~-~~~~~~~~-~~~v~~~~~s~d~~~l~~~ 444 (577)
T 2ymu_A 369 KLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGH-SSSVWGVAFSPDDQTIASA 444 (577)
T ss_dssp EEEETTC-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC-EEEEEECC-SSCEEEEEECTTSSEEEEE
T ss_pred EEEcCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-EEEEecCC-CCCeEEEEECCCCCEEEEE
Confidence 9999653 3333332 267899999988854 3455779985322 11111000 0012223556777777654
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.8e-39 Score=462.67 Aligned_cols=431 Identities=19% Similarity=0.272 Sum_probs=354.4
Q ss_pred CccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEE
Q psy9598 445 SREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 524 (1915)
Q Consensus 445 ~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~L 524 (1915)
...++|+.++.+.+|+... ......+.+|.+.|+|++|+|+|++||+|+.||.|+|||+.+++++.++.+|...|.++
T Consensus 628 ~~l~s~~~d~~i~vw~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~ 705 (1249)
T 3sfz_A 628 QRIASCGADKTLQVFKAET--GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705 (1249)
T ss_dssp SEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CEEEEEeCCCeEEEEECCC--CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence 3456788999999997644 34566889999999999999999999999999999999999999999999999999999
Q ss_pred EEeC--CCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccce
Q psy9598 525 AIDN--RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT 602 (1915)
Q Consensus 525 afsp--dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~ 602 (1915)
+|++ ++.+|++|+.|++|++||+.++.++..+.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++......
T Consensus 706 ~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~----~~~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD----DELLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp EECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS----TTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred EEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC----CCEEEEEECCCeEEEEeCCCCccccee
Confidence 9999 5669999999999999999999999999999999999999994 489999999999999999776432211
Q ss_pred eccC----------------------------------------------------------------------------
Q psy9598 603 VFHE---------------------------------------------------------------------------- 606 (1915)
Q Consensus 603 ~~~~---------------------------------------------------------------------------- 606 (1915)
....
T Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp ECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS
T ss_pred cccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC
Confidence 1000
Q ss_pred ---------ccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCC---------------------------
Q psy9598 607 ---------PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGV--------------------------- 650 (1915)
Q Consensus 607 ---------~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~--------------------------- 650 (1915)
.......+.+|...|.+++|+|+|.+|++|+.||.|++|++...
T Consensus 862 g~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1249)
T 3sfz_A 862 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD 941 (1249)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEE
T ss_pred CeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEec
Confidence 00001123567788999999999999999999999999985310
Q ss_pred -------------------------------------------------CCCceeEEeccCCCCeeEEEEcCCCCEEEEE
Q psy9598 651 -------------------------------------------------DSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 681 (1915)
Q Consensus 651 -------------------------------------------------~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg 681 (1915)
.....+..+.+|...|.+++|+|+|.+|++|
T Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1021 (1249)
T 3sfz_A 942 NIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS 1021 (1249)
T ss_dssp SSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEE
T ss_pred CCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEE
Confidence 0122334456799999999999999999999
Q ss_pred eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee
Q psy9598 682 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK 761 (1915)
Q Consensus 682 s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~ 761 (1915)
+.||.|++||+.++.... ...+...|.+++|++++ .+++++. ||.|++||+.+++++..+.
T Consensus 1022 ~~dg~i~vwd~~~~~~~~-----------------~~~~~~~v~~~~~~~~~-~l~~~~~-dg~v~vwd~~~~~~~~~~~ 1082 (1249)
T 3sfz_A 1022 SEDSVIQVWNWQTGDYVF-----------------LQAHQETVKDFRLLQDS-RLLSWSF-DGTVKVWNVITGRIERDFT 1082 (1249)
T ss_dssp CSSSBEEEEETTTTEEEC-----------------CBCCSSCEEEEEECSSS-EEEEEES-SSEEEEEETTTTCCCEEEE
T ss_pred cCCCEEEEEECCCCceEE-----------------EecCCCcEEEEEEcCCC-cEEEEEC-CCcEEEEECCCCceeEEEc
Confidence 999999999999876432 22467889999999966 4566776 9999999999999999999
Q ss_pred CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9598 762 GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVY 841 (1915)
Q Consensus 762 gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iw 841 (1915)
+|.+.|++++|+| ++.+|++|+.||+|+|||+.++.+ +..+. .|.+.|++++|+|+|.+||+|+.||.|+||
T Consensus 1083 ~~~~~v~~~~~s~-d~~~l~s~s~d~~v~iwd~~~~~~--~~~l~-----~h~~~v~~~~~s~dg~~lat~~~dg~i~vw 1154 (1249)
T 3sfz_A 1083 CHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSP--LHELK-----GHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154 (1249)
T ss_dssp CCSSCCCCEEECS-SSSSCEEECCSSCCCEECSSSSSC--SBCCC-----CCSSCEEEEEECSSSSEEEEEETTSCCCEE
T ss_pred ccCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCcce--eeeec-----cCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 9999999999999 999999999999999999999887 55444 567899999999999999999999999999
Q ss_pred eCCCCcccccC---------------CCceeecCCCCeeeecCCCccceeecccCCCCCcCCCCcccCCCCCCCCCCCcc
Q psy9598 842 GLGGFKRPQNI---------------PRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEVQR 906 (1915)
Q Consensus 842 dl~s~~~~~~l---------------~~~~~F~~d~~~Lv~~~~~~~~v~D~~t~~~p~~~~~pfl~~~~G~~ypp~~Q~ 906 (1915)
++.++..+..+ ...+.|++|+..++... +.+.+||..++........+ ...+....++|++..
T Consensus 1155 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~~~-~~~i~~~~~s~dg~~ 1232 (1249)
T 3sfz_A 1155 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTN-GTNLKKIHVSPDFRT 1232 (1249)
T ss_dssp ESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCCCS-SCCCCCCEECSSSCC
T ss_pred ECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeeecc-CCcccEEEECCCCCE
Confidence 99998877655 23688999999998665 66789999887654432211 112445566777777
Q ss_pred cccC
Q psy9598 907 LVPG 910 (1915)
Q Consensus 907 lv~G 910 (1915)
|+.|
T Consensus 1233 l~~~ 1236 (1249)
T 3sfz_A 1233 YVTV 1236 (1249)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.2e-39 Score=406.34 Aligned_cols=288 Identities=24% Similarity=0.429 Sum_probs=263.8
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
..+.||.++|+|++|+|++.+||+|+.||+|+|||+.++.++.++.+|.+.|++|+|++++.+|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
+.++..+.+|...|++++|+|+ +.+|++|+.|++|++||+.++..+.. +.+|...|.++.|+++
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~----~~~l~s~s~D~~i~~wd~~~~~~~~~------------~~~h~~~v~~~~~~~~ 245 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPN----GDHIVSASRDKTIKMWEVQTGYCVKT------------FTGHREWVRMVRPNQD 245 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSS----SSEEEEEETTSEEEEEETTTCCEEEE------------EECCSSCEEEEEECTT
T ss_pred CceeEEEcCCCCCEEEEEEeCC----CCEEEEEeCCCeEEEEECCCCcEEEE------------EeCCCccEEEEEECCC
Confidence 9999999999999999999994 48999999999999999988764332 2356788999999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC--------------------CCEEEEEeCCCcEEE
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS--------------------HLRFVSGSRDGTALI 689 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd--------------------g~~L~sgs~DG~I~I 689 (1915)
|.+|++|+.||.|++||+. .......+.+|...|.+++|+|+ |.+|++|+.||+|++
T Consensus 246 g~~l~s~s~D~~v~vwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i 322 (410)
T 1vyh_C 246 GTLIASCSNDQTVRVWVVA---TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322 (410)
T ss_dssp SSEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECC---CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence 9999999999999999994 34567778899999999999996 678999999999999
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEE
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~s 769 (1915)
||+.++.+... ..+|...|.+++|+|+|.+|++++. ||.|+|||+.+++++..+.+|...|++
T Consensus 323 wd~~~~~~~~~----------------~~~h~~~v~~v~~~~~g~~l~s~s~-D~~i~vwd~~~~~~~~~~~~h~~~v~~ 385 (410)
T 1vyh_C 323 WDVSTGMCLMT----------------LVGHDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKRCMKTLNAHEHFVTS 385 (410)
T ss_dssp EETTTTEEEEE----------------EECCSSCEEEEEECSSSSCEEEEET-TTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred EECCCCceEEE----------------EECCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceEEEEcCCCCcEEE
Confidence 99998875432 2346778999999999999999998 999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEecCceEEEEEC
Q psy9598 770 LESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
++|+| ++.+|+||+.||+|+||++
T Consensus 386 l~~~~-~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHK-TAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECS-SSSCEEEEETTSEEEEEC-
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEeC
Confidence 99999 9999999999999999986
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.5e-38 Score=385.72 Aligned_cols=292 Identities=20% Similarity=0.360 Sum_probs=261.1
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVW 545 (1915)
+....+|.||.+.|++++|+|+|++|++|+.||+|+|||+.++..+..+.+|...|.+++|+|++.+|++|+.|+.|+||
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC----ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 546 NLQTL----APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 546 Dl~tg----~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
++.++ .....+.+|.+.|.++.|++. ..|++++.||+|++||+.++..+.. +.+|...|
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~l~s~s~d~~i~~wd~~~~~~~~~------------~~~h~~~v 187 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD-----NQIVTSSGDTTCALWDIETGQQTTT------------FTGHTGDV 187 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEET-----TEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCC-----CcEEEEECCCcEEEEECCCCcEEEE------------EcCCCCce
Confidence 99875 356678899999999999884 3599999999999999988754322 33567899
Q ss_pred EEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
.+++|+|++.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+.||+|+|||++++......
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 264 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT---TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECC---CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 999999999999999999999999994 44567788999999999999999999999999999999999987644321
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEE
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~La 781 (1915)
. ...+...|.+++|+|+|.+|++++. ||.|++||+.++..+..+.+|.+.|++++|+| ++.+|+
T Consensus 265 ~--------------~~~~~~~v~~~~~s~~g~~l~~g~~-d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~ 328 (340)
T 1got_B 265 S--------------HDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVA 328 (340)
T ss_dssp C--------------CTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEE
T ss_pred c--------------cCCcccceEEEEECCCCCEEEEECC-CCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEE
Confidence 1 1123456999999999999999998 99999999999999999999999999999999 999999
Q ss_pred EEecCceEEEEE
Q psy9598 782 SAGHDGLIIIWD 793 (1915)
Q Consensus 782 Sgs~DG~I~IWd 793 (1915)
||+.||+|+|||
T Consensus 329 s~s~D~~i~iWd 340 (340)
T 1got_B 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCccEEecC
Confidence 999999999996
No 8
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=100.00 E-value=1.9e-40 Score=387.57 Aligned_cols=228 Identities=24% Similarity=0.400 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy9598 1373 ATCEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPH 1452 (1915)
Q Consensus 1373 ~~~~~i~~~~~~~~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~Na~~yN~~~ 1452 (1915)
+....+..+|..+..+..+++|..||++..+|+||.+|++||||+||++||++|.|+++++|.+||+|||+||.+||+++
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 93 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 93 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCC
Confidence 33455666777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCccchhhhhcccccCCCChhhhhhhhhhhccccCCcchhhhhHHHhhhhhcCCchh
Q psy9598 1453 SNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFN 1532 (1915)
Q Consensus 1453 s~i~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1532 (1915)
|.|+++|+.|.++|.+.+++... ..... + +...+... ......
T Consensus 94 s~i~~~A~~l~~~~~~~~~~~~~-----~~~~~-------------e-------k~i~p~~d------------d~~~~~ 136 (265)
T 3uv5_A 94 HSLTQISQSMLDLCDEKLKEKED-----KLARL-------------E-------KAINPLLD------------DDDQVA 136 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHH-----HHHHH-------------H-------HHHSTTTT------------CHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhh-----hhhhh-------------h-------hhhhhccc------------cchhhH
Confidence 99999999999999998886210 00000 0 00000000 000123
Q ss_pred hHHHHHHHHHH-HHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1533 WKNECREVLET-LWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1533 ~~~~~~~ll~~-l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
|...|..++.. |+.+++++||+.||+...+||||++|++||||+||++||.+|.|.++++|..||+|||.||++||+++
T Consensus 137 ~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~ 216 (265)
T 3uv5_A 137 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 216 (265)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 44556666654 77899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1612 RSKIYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1612 ~s~i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
|.||.+|..|+++|+++++++...+.
T Consensus 217 -s~~~~~A~~l~~~~~~~~~~~~~~~~ 242 (265)
T 3uv5_A 217 -SQYTKTAQEIVNVCYQTLTEYDEHLT 242 (265)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887644
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=380.98 Aligned_cols=289 Identities=22% Similarity=0.337 Sum_probs=258.8
Q ss_pred eEEecCCCCcEEEEEEcCC----CCEEEEEECCCcEEEEECCCCcE--EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcE
Q psy9598 469 HYVNLGHLSAVFCVLFDKL----GEVIVTGADDLLIKLWRARDGKL--LATLRGCSGEISDIAIDNRNILLAAGTVDKTI 542 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspd----g~~LaTGs~Dg~I~IWd~~tg~~--~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtI 542 (1915)
...+.+|.+.|+||+|+++ +.+||||+.|++|+||++.++.. ...+.+|...|.+++|++++.+|++|+.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 3567899999999999874 67999999999999999987754 45789999999999999999999999999999
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 543 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
+|||+.++.++..+..|...+.+++|+|+ +.+|++|+.||.|++|++.++.....+ ..+...|.
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spd----g~~l~~g~~dg~v~i~~~~~~~~~~~~------------~~~~~~v~ 168 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPD----SQYLATGTHVGKVNIFGVESGKKEYSL------------DTRGKFIL 168 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTT----SSEEEEECTTSEEEEEETTTCSEEEEE------------ECSSSCEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCC----CCEEEEEcCCCcEEEEEcCCCceeEEe------------cCCCceEE
Confidence 99999999999999999999999999994 589999999999999999887543222 23457799
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 623 CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 623 ~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
+++|+|+|.+|++|+.||.|+|||+. ....+..+.+|...|.+++|+|++.+|++|+.||+|+|||+.++.....
T Consensus 169 ~~~~spdg~~lasg~~dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~-- 243 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAIDGIINIFDIA---TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT-- 243 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETT---TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE--
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECC---CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE--
Confidence 99999999999999999999999994 4466778899999999999999999999999999999999988764332
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
..+|...|.+++|+|++.+|++++. |+.|+|||+.++.++..+.+|...|++++|+| ++.+|++
T Consensus 244 --------------~~~h~~~v~~~~~sp~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s 307 (321)
T 3ow8_A 244 --------------LSGHASWVLNVAFCPDDTHFVSSSS-DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVS 307 (321)
T ss_dssp --------------ECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred --------------EcCCCCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEE
Confidence 2347788999999999999999998 99999999999999999999999999999999 9999999
Q ss_pred EecCceEEEEEC
Q psy9598 783 AGHDGLIIIWDI 794 (1915)
Q Consensus 783 gs~DG~I~IWdl 794 (1915)
|+.||+|+|||+
T Consensus 308 ~~~d~~i~vwd~ 319 (321)
T 3ow8_A 308 VGDDQEIHIYDC 319 (321)
T ss_dssp EETTCCEEEEEC
T ss_pred EeCCCeEEEEeC
Confidence 999999999996
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.7e-38 Score=394.28 Aligned_cols=312 Identities=21% Similarity=0.284 Sum_probs=267.3
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRI 544 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrV 544 (1915)
.+...++|.||.+.|+||+|+|+|.+||||+.||+|+|||+.++..+..+.+|...|.+++|+|+|.+|++|+.|+.|+|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCc-------eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 545 WNLQTLA-------PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 545 WDl~tg~-------~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
|++.+.. ....+.+|.+.|.++.|+|. +...|++|+.|++|++||+.++..+..+... ...+|
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~---~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-------~~~~h 204 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD---QETRLITGSGDQTCVLWDVTTGQRISIFGSE-------FPSGH 204 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS---SSSCEEEECTTSCEEEECTTTCCEEEEECCC-------SSSSC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecC---CCCEEEEECCCCcEEEEEcCCCcEEEEeecc-------cCCCC
Confidence 9997532 34567899999999999984 3468999999999999999988654332211 12357
Q ss_pred CCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q psy9598 618 NAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 618 ~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~ 696 (1915)
...|.+++|++ ++.+|++|+.||.|++||++.. ...+..+.+|.+.|.+|+|+|++.+|++|+.||+|+|||++++.
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~--~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRIT--SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT--CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC--CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence 78999999987 8899999999999999998532 24466788999999999999999999999999999999999987
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe----eCCCCCeEEEEE
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL----KGHTNEVFVLES 772 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l----~gH~~~V~sl~~ 772 (1915)
......... .....+...|++++|+|+|.+|++++. ||.|++||+.+++.+..+ .+|.+.|++++|
T Consensus 283 ~~~~~~~~~---------~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 283 QLQVYNREP---------DRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp EEEEECCCC---------SSSCCSSCSCSEEEECSSSSEEEEECT-TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred EEEEecccc---------cccccccCceEEEEECCCCCEEEEEEC-CCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 654332111 011123345889999999999999988 999999999999988887 689999999999
Q ss_pred ccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 773 HPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 773 sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+| ++.+|+|||.||+|+||++...+.
T Consensus 353 s~-dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 353 SS-DGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp CS-SSSEEEEECTTSCEEEEECCSSSS
T ss_pred CC-CCCEEEEeeCCCCEEEEecCCCcc
Confidence 99 999999999999999999976543
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.1e-37 Score=446.35 Aligned_cols=417 Identities=20% Similarity=0.271 Sum_probs=330.2
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~ 548 (1915)
...+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.++..+.++.+|.+.|++++|+|++.+||+|+.||+|+|||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 549 tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
+++++..+.+|...|++++|+|.. +..++++|+.||+|++||+.++.....+ .+|...|.+++|+|
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~~~~~~~------------~~h~~~v~~~~~sp 753 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKS--NHLLLATGSNDFFLKLWDLNQKECRNTM------------FGHTNSVNHCRFSP 753 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSS--SCCEEEEEETTSCEEEEETTSSSEEEEE------------CCCSSCEEEEEECS
T ss_pred CCceEEEEcCCCCcEEEEEEecCC--CceEEEEEeCCCeEEEEECCCcchhhee------------cCCCCCEEEEEEec
Confidence 999999999999999999999954 5579999999999999999887543322 24456666777777
Q ss_pred CCcEEEEEeCCCeEEEEEecCC----------------------------------------------------------
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGV---------------------------------------------------------- 650 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~---------------------------------------------------------- 650 (1915)
++.+|++|+.||.|++||+...
T Consensus 754 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 754 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA 833 (1249)
T ss_dssp STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee
Confidence 7666777777777777765321
Q ss_pred ------------------------------------CCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 651 ------------------------------------DSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 651 ------------------------------------~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
.....+..+.+|.+.|.+++|+|+|.+|++++.||.|++|++..
T Consensus 834 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 11223445678999999999999999999999999999999753
Q ss_pred Cce----------------------------------------E--------Eeeeccc----------cc-----CCCC
Q psy9598 695 SQW----------------------------------------R--------FIRLDMN----------TC-----LPHT 711 (1915)
Q Consensus 695 ~~~----------------------------------------~--------~~~~~~~----------~~-----~~~~ 711 (1915)
... . ....... .. ....
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~ 993 (1249)
T 3sfz_A 914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993 (1249)
T ss_dssp HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence 100 0 0000000 00 0011
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEE
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIII 791 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~I 791 (1915)
........|...|++++|+|+|.+|++++. ||.|++||+.++..+. +.+|...|.+++|+| + ..+++++.||+|++
T Consensus 994 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~-~~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-D-SRLLSWSFDGTVKV 1069 (1249)
T ss_dssp SCEEECCCCSSCCCCEEECSSSSCEEEECS-SSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-S-SEEEEEESSSEEEE
T ss_pred ceeeecccCCCceEEEEECCCCCEEEEEcC-CCEEEEEECCCCceEE-EecCCCcEEEEEEcC-C-CcEEEEECCCcEEE
Confidence 112234467888999999999999999998 9999999999988764 568999999999999 4 46889999999999
Q ss_pred EECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCC------ceeecCCCCee
Q psy9598 792 WDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPR------ELFFHTDYRTL 865 (1915)
Q Consensus 792 Wdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~------~~~F~~d~~~L 865 (1915)
||+.++.. ...+. .|.+.|.+++|+|+|.+|++++.||.|+||++.++.+...+.. .+.|++|++.+
T Consensus 1070 wd~~~~~~--~~~~~-----~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~l 1142 (1249)
T 3sfz_A 1070 WNVITGRI--ERDFT-----CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1142 (1249)
T ss_dssp EETTTTCC--CEEEE-----CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEE
T ss_pred EECCCCce--eEEEc-----ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEE
Confidence 99999988 66655 5678899999999999999999999999999999888777654 57899999988
Q ss_pred eecC-CCccceeecccCCCCCcCCCCc--------ccCCCCCCCCCCCcccccC
Q psy9598 866 NRPN-GLFEPTYDEVTNLPPHLMPPPF--------LVDLNGTPYPPEVQRLVPG 910 (1915)
Q Consensus 866 v~~~-~~~~~v~D~~t~~~p~~~~~pf--------l~~~~G~~ypp~~Q~lv~G 910 (1915)
+..+ .+.+.+||..++.......+.. .-.+.+..|+|+++.|+.|
T Consensus 1143 at~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A 1143 ATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp EEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE
T ss_pred EEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC
Confidence 8543 4557799999876655432111 1113344566777777654
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=381.07 Aligned_cols=319 Identities=19% Similarity=0.260 Sum_probs=255.0
Q ss_pred ceeeeEEecCCCC-cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE---EEeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy9598 465 NLRQHYVNLGHLS-AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA---TLRGCSGEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 465 ~~~~~~~l~gH~~-~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~---~l~gH~~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
.+.+..+|.+|.. .|++|+|+|+|.+||+|+.||+|+|||+.++.... ...+|...|.+|+|+|++.+||+|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4567788999998 99999999999999999999999999998886432 2368999999999999999999999999
Q ss_pred cEEEEECCCC--ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 541 TIRIWNLQTL--APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 541 tIrVWDl~tg--~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
+|+||++.++ .++..+.+|.+.|++++|+|+ +.+|++|+.|++|++||+..+.... ....+..|.
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~----~~~l~s~s~D~~v~iwd~~~~~~~~---------~~~~~~~h~ 150 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS----GNLLATCSRDKSVWVWEVDEEDEYE---------CVSVLNSHT 150 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEEECTTSCEE---------EEEEECCCC
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCC----CCEEEEEECCCeEEEEECCCCCCeE---------EEEEecCcC
Confidence 9999999876 457889999999999999994 5899999999999999998763211 112334677
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
..|.+++|+|++.+|++|+.|+.|++|++.. ........+.+|...|.+|+|+|+|.+|++|+.||+|+||++......
T Consensus 151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 151 QDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp SCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 8999999999999999999999999999843 223455678999999999999999999999999999999997533210
Q ss_pred EeeecccccCCCCccc-cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc---------eEEEeeCCCCCeE
Q psy9598 699 FIRLDMNTCLPHTKET-SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD---------LVQVLKGHTNEVF 768 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~-~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~---------~i~~l~gH~~~V~ 768 (1915)
.... ........... .....|...|.+++|++++..|++++. |+.|++|+...+. ....+.+|...|+
T Consensus 230 ~~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 307 (345)
T 3fm0_A 230 QGVA-CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG-DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307 (345)
T ss_dssp TCCC-CC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET-TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEE
T ss_pred ccce-eeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC-CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEe
Confidence 0000 00000000000 111236778999999999999999998 9999999986542 1233468999999
Q ss_pred EEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 769 VLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 769 sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+|+|+|.+..+|||||.||+|+||++.+.+.
T Consensus 308 ~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 308 CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 9999994346999999999999999988765
No 13
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.4e-37 Score=378.66 Aligned_cols=292 Identities=22% Similarity=0.339 Sum_probs=259.2
Q ss_pred eeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
.....|.||.+.|+||+|+|++.+||||+.||+|+|||..++.....+..|...|.+++|+|+|.+|++|+.|+.|++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 547 LQTL------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 547 l~tg------~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
+... .....+.+|.+.|.+++|+|. +..|++|+.||+|++||+.++..+.. +.+|...
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~t~s~D~~v~lwd~~~~~~~~~------------~~~h~~~ 198 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNS----DMQILTASGDGTCALWDVESGQLLQS------------FHGHGAD 198 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSS----SSEEEEEETTSEEEEEETTTCCEEEE------------EECCSSC
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCC----CCEEEEEeCCCcEEEEeCCCCeEEEE------------EcCCCCC
Confidence 8653 346677889999999999994 48999999999999999988764332 2356788
Q ss_pred eEEEEECC--CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE
Q psy9598 621 ILCSSFSP--GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 621 V~~l~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
|.+++|+| +|.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+.||+|++||++.....
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMR---SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECC---CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999987 57899999999999999994 34567788999999999999999999999999999999999887643
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR 778 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~ 778 (1915)
.... ...+...+.+++|+|+|.+|++++. |+.|+|||+.++..+..+.+|.+.|++++|+| ++.
T Consensus 276 ~~~~--------------~~~~~~~~~~~~~s~~g~~l~~g~~-d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~ 339 (354)
T 2pbi_B 276 AIYS--------------KESIIFGASSVDFSLSGRLLFAGYN-DYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGT 339 (354)
T ss_dssp EEEC--------------CTTCCSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSS
T ss_pred EEEc--------------CCCcccceeEEEEeCCCCEEEEEEC-CCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCC
Confidence 3221 1113346889999999999999998 99999999999999999999999999999999 999
Q ss_pred EEEEEecCceEEEEE
Q psy9598 779 VLLSAGHDGLIIIWD 793 (1915)
Q Consensus 779 ~LaSgs~DG~I~IWd 793 (1915)
+|+||+.||+|+||+
T Consensus 340 ~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 AFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEEcCCCCEEecC
Confidence 999999999999996
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.8e-37 Score=369.89 Aligned_cols=296 Identities=15% Similarity=0.241 Sum_probs=256.2
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVW 545 (1915)
+.+.++|.+|.+.|++|+|+|+|.+|++|+.||+|+|||+.++..+..+.+|...|.+++|++++++|++|+.|++|+||
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 546 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 546 Dl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
|+.++.++..+.+|.+.|++++|+|. +.+|++|+.||+|++||+.++... ...+.+|...|.|++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~sgs~D~~v~lWd~~~~~~~-----------~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPT----KPYVLSGSDDLTVKLWNWENNWAL-----------EQTFEGHEHFVMCVA 147 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSS----SSEEEEEETTSCEEEEEGGGTTEE-----------EEEECCCCSCEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCC----CCEEEEECCCCeEEEEECCCCcch-----------hhhhcccCCcEEEEE
Confidence 99999999999999999999999995 489999999999999999876321 122346778999999
Q ss_pred ECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 626 FSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH--SHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 626 fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp--dg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
|+| ++.+|++|+.||+|+|||+..... ......+|...|..++|++ ++.+|++|+.||+|+|||+.++.+...
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~-- 223 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT-- 223 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSC--SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE--
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCc--cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee--
Confidence 999 678999999999999999953322 2223346778899999987 678999999999999999998875432
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC-EEE
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VLL 781 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~-~La 781 (1915)
..+|...|.+++|+|++.+|++++. ||.|+|||+.+++++..+..|...+++++|+|.++. +|+
T Consensus 224 --------------~~~h~~~v~~~~~~p~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 224 --------------LEGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp --------------EECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEE
T ss_pred --------------eCCCCCCEEEEEECCCCCEEEEEcC-CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEE
Confidence 2347788999999999999999998 999999999999999999999999999999994433 477
Q ss_pred EEecCceEEEEECCC
Q psy9598 782 SAGHDGLIIIWDILS 796 (1915)
Q Consensus 782 Sgs~DG~I~IWdl~s 796 (1915)
+|+.| .+.+|++..
T Consensus 289 sg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEETT-EEEEEECC-
T ss_pred EecCC-ceEEEEecc
Confidence 76655 567887754
No 15
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7e-37 Score=386.78 Aligned_cols=289 Identities=18% Similarity=0.285 Sum_probs=259.7
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 511 LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
...+.+|.+.|++++|+|++.+|++|+.||+|+|||+.++.....+.+|.+.|++++|+|+ +.+|++|+.||+|++
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~----~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS----GKLLASCSADMTIKL 176 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT----SSEEEEEETTSCCCE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC----CCEEEEEeCCCeEEE
Confidence 3457899999999999999999999999999999999999999999999999999999984 489999999999999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEE
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~ 670 (1915)
||+.++..+. .+.+|...|.+++|+|++.+|++|+.|++|++||+. ...++..+.+|...|.+++
T Consensus 177 wd~~~~~~~~------------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~---~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 177 WDFQGFECIR------------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ---TGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp EETTSSCEEE------------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT---TCCEEEEEECCSSCEEEEE
T ss_pred EeCCCCceeE------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC---CCcEEEEEeCCCccEEEEE
Confidence 9998765332 234677899999999999999999999999999994 4456778899999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC------------------
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS------------------ 732 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd------------------ 732 (1915)
|+++|.+|++|+.||+|++||+.++.+... ...|...|.+++|+|+
T Consensus 242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~----------------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQTVRVWVVATKECKAE----------------LREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEE----------------ECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCceeeE----------------ecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 999999999999999999999988775432 2346778999999996
Q ss_pred --CCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeec
Q psy9598 733 --DRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVE 810 (1915)
Q Consensus 733 --g~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~ 810 (1915)
|.+|++++. |+.|++||+.++.++..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.++++ +..+.
T Consensus 306 ~~g~~l~sgs~-D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~--~~~~~---- 377 (410)
T 1vyh_C 306 KPGPFLLSGSR-DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRC--MKTLN---- 377 (410)
T ss_dssp --CCEEEEEET-TSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCC--CEEEE----
T ss_pred CCCCEEEEEeC-CCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce--EEEEc----
Confidence 678888888 99999999999999999999999999999999 999999999999999999998887 66654
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 811 GQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 811 ~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
.|...|++++|+|++.+||+|+.||.|+||++
T Consensus 378 -~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 378 -AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp -CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred -CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 56789999999999999999999999999986
No 16
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-37 Score=385.44 Aligned_cols=340 Identities=16% Similarity=0.241 Sum_probs=279.1
Q ss_pred EecCCCCcEEEEEEcCCCC-EEEEEECCCcEEEEEC----CCCc------EEEEEeC----------CCCCEEEEEEeCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRA----RDGK------LLATLRG----------CSGEISDIAIDNR 529 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~-~LaTGs~Dg~I~IWd~----~tg~------~~~~l~g----------H~~~I~~Lafspd 529 (1915)
....|.+.|+|++|+|+|. +||+|+.||.|+||++ .++. ....+.. |.+.|++|+|+|+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 3456779999999999999 9999999999999999 8888 5666654 7889999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccc
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM 609 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~ 609 (1915)
+.+|++|+.||.|+||| .++..+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.++..+..+.......
T Consensus 120 ~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD----GTHIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp SSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT----SSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC----CCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 99999999999999999 678889999999999999999994 4899999999999999998876554443321100
Q ss_pred ---cccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCc
Q psy9598 610 ---FNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGT 686 (1915)
Q Consensus 610 ---~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~ 686 (1915)
...........+.+++|++++ .+++|+.+|.|++||+.. ...+..+.+|...|.+++|+|++.+|++++.||.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITE---KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp -----------CCCBSCCEEEETT-EEEEECGGGCEEEEETTC---SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCC---CceeeeeccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 000111122238889999986 588899999999999943 3455667899999999999999999999999999
Q ss_pred EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCC
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNE 766 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~ 766 (1915)
|++||+.++..... ...+...|.+++|+|++ +|++++. |+.|++||+.+++++..+.+|...
T Consensus 271 i~i~d~~~~~~~~~----------------~~~~~~~i~~~~~~~~~-~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 271 LRIWHGGNGNSQNC----------------FYGHSQSIVSASWVGDD-KVISCSM-DGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp EEEECSSSBSCSEE----------------ECCCSSCEEEEEEETTT-EEEEEET-TSEEEEEETTTTEEEEEEECTTCC
T ss_pred EEEEECCCCccceE----------------ecCCCccEEEEEECCCC-EEEEEeC-CCcEEEEECCCCcEeEecccCCcc
Confidence 99999987653321 22467789999999999 8888887 999999999999999999999999
Q ss_pred eEEEEEccCCCCEEEEEecCceEEEEECCCCc--------------------cccceeeeeeecCCCCc-ceEEEEEcCC
Q psy9598 767 VFVLESHPFDSRVLLSAGHDGLIIIWDILSSK--------------------QRGYKWFHNIVEGQGEG-ALFDGKWSPD 825 (1915)
Q Consensus 767 V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~--------------------~~~~~~~~~~~~~~~~~-~V~~vafSpd 825 (1915)
|.+++|+| ++.+|++|+.||.|+|||+.++. . +..+. ++..+ .|.+++|+|+
T Consensus 333 i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~v~~~~~s~~ 405 (425)
T 1r5m_A 333 IFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL--YASYQ----SSQDNDYIFDLSWNCA 405 (425)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCE--EEEEC----CTTCCCCEEEEEECTT
T ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchh--hhhhc----CcccCCceEEEEccCC
Confidence 99999999 99999999999999999998776 2 23222 22223 9999999999
Q ss_pred CCEEEEEeCCCeEEEEeCC
Q psy9598 826 GTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 826 g~~Lasg~~dG~I~Iwdl~ 844 (1915)
|.+|++++.||.|+||++.
T Consensus 406 ~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 406 GNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp SSEEEEEESSSCCEEEECC
T ss_pred CceEEEEecCceEEEEeec
Confidence 9999999999999999986
No 17
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=100.00 E-value=6e-39 Score=378.75 Aligned_cols=225 Identities=24% Similarity=0.410 Sum_probs=187.1
Q ss_pred HHHHHHHHHhcCCCccCCCCCCCCCCCCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHH
Q psy9598 1376 EKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNI 1455 (1915)
Q Consensus 1376 ~~i~~~~~~~~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~Na~~yN~~~s~i 1455 (1915)
..+...|+.|..+..+++|+.||++..+|+||.+|++||||+||++||+++.|.++.+|.+||+|||+||.+||+++|.|
T Consensus 50 ~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i 129 (292)
T 3aad_A 50 SILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSL 129 (292)
T ss_dssp HHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHH
T ss_pred HHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 34456677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccchhhhhcccccCCCChhhhhhhhhhhccccCCcchhhhhHHHhhhhhcCCchhhHH
Q psy9598 1456 VKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKN 1535 (1915)
Q Consensus 1456 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1535 (1915)
+.+|..|.++|.+.++.... .+.. ......+...... ...+..
T Consensus 130 ~~~A~~L~~~~~~~~~~~~~--------~~~~-----------------~e~~i~Pl~dd~~------------~~~~~~ 172 (292)
T 3aad_A 130 TQISQSMLDLCDEKLKEKED--------KLAR-----------------LEKAINPLLDDDD------------QVAFSF 172 (292)
T ss_dssp HHHHTHHHHTTTTTGGGSHH--------HHHH-----------------HHHTTSSSTTCHH------------HHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchh--------hhhh-----------------hhhccccccccch------------hHHHHH
Confidence 99999999999877765210 0000 0000000000000 012223
Q ss_pred HHHHHHH-HHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCCCH
Q psy9598 1536 ECREVLE-TLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSK 1614 (1915)
Q Consensus 1536 ~~~~ll~-~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~s~ 1614 (1915)
.+.+++. .|+.++.++||+.|||...+||||+||++||||+||++||.+|.|.++++|..||+|||.||++||+++ |.
T Consensus 173 ~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~-s~ 251 (292)
T 3aad_A 173 ILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE-SQ 251 (292)
T ss_dssp HHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT-SH
T ss_pred HHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC-CH
Confidence 3445443 477899999999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1615 IYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1615 i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
||.+|..|+++|+++++.+...+.
T Consensus 252 i~~~A~~L~~~~~~~~~~~~~~l~ 275 (292)
T 3aad_A 252 YTKTAQEIVNVCYQTLTEYDEHLT 275 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876554
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.9e-36 Score=365.63 Aligned_cols=293 Identities=17% Similarity=0.287 Sum_probs=254.0
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCC-CEEEEEECCCcEEEEECCC-----CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLG-EVIVTGADDLLIKLWRARD-----GKLLATLRGCSGEISDIAIDNRNILLAAGTV 538 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg-~~LaTGs~Dg~I~IWd~~t-----g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~ 538 (1915)
.+.+..+|.||.+.|++|+|+|++ .+|+||+.|++|++|++.+ +.++.++.+|...|.+++|++++.+|++|+.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 356667899999999999999965 8999999999999999864 3467889999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
|++|+|||+.+++++..+.+|...|.+++|+|. +.+|++|+.||+|++||+.... + ..+.+|.
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~s~D~~i~vwd~~~~~-~------------~~~~~h~ 148 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK----ASMIISGSRDKTIKVWTIKGQC-L------------ATLLGHN 148 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTT----SCEEEEEETTSCEEEEETTSCE-E------------EEECCCS
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCe-E------------EEEeccC
Confidence 999999999999999999999999999999994 4899999999999999986431 1 1234677
Q ss_pred CceEEEEECCC------CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy9598 619 AHILCSSFSPG------GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692 (1915)
Q Consensus 619 ~~V~~l~fspd------g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl 692 (1915)
..|.++.|+|. +..|++|+.|+.|++||+. .......+.+|...|.+++|+|+|.+|++|+.||+|+|||+
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~---~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETT---TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC---cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 88999999985 4589999999999999993 34556778899999999999999999999999999999999
Q ss_pred cCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC--------CC
Q psy9598 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG--------HT 764 (1915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g--------H~ 764 (1915)
.+++...... ....|.+++|+|++.+|++++ ++.+++|++..+..+..+.. |.
T Consensus 226 ~~~~~~~~~~-----------------~~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (319)
T 3frx_A 226 AAKKAMYTLS-----------------AQDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286 (319)
T ss_dssp TTTEEEEEEE-----------------CCSCEEEEEECSSSSEEEEEE--TTEEEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred CCCcEEEEec-----------------CCCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCcCeeeeccCccccccccCcC
Confidence 9887544221 234689999999999998876 46699999998877776643 45
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEECCCC
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
..|.+++|+| ++++|++|+.||.|+|||+.++
T Consensus 287 ~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 287 PHAVSLAWSA-DGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCEEEEEECT-TSSEEEEEETTSCEEEEEEEEC
T ss_pred cceeEEEECC-CCCEEEEeecCceEEEEEEeec
Confidence 6799999999 9999999999999999998764
No 19
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.5e-36 Score=394.86 Aligned_cols=398 Identities=14% Similarity=0.164 Sum_probs=309.1
Q ss_pred CCeEEEecccCC--ceeeeEEecCCCCc-EEEEEEcC--CCCEEEEEECCCcEEEEECCCC--------cEEEEEeCCCC
Q psy9598 453 SRSLMISSHKYS--NLRQHYVNLGHLSA-VFCVLFDK--LGEVIVTGADDLLIKLWRARDG--------KLLATLRGCSG 519 (1915)
Q Consensus 453 d~~~~i~~~~~~--~~~~~~~l~gH~~~-V~~vafsp--dg~~LaTGs~Dg~I~IWd~~tg--------~~~~~l~gH~~ 519 (1915)
++.+.+|+.... .......+.+|.+. |+|++|+| +|++||+|+.||.|+|||+.++ .++..+.+|..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 117 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence 778899876532 12566789999999 99999999 9999999999999999999855 77888999999
Q ss_pred CEEEEEEeCCCCEEEEEeCC----CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc
Q psy9598 520 EISDIAIDNRNILLAAGTVD----KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~D----gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~ 595 (1915)
.|.+++|+|++.+|++++.+ +.|++|| ++..+..+.+|...|++++|+|.+ ..+|++++.||.|++||+.+
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~v~vwd~~~ 192 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR---PMRSMTVGDDGSVVFYQGPP 192 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS---SCEEEEEETTTEEEEEETTT
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC---CcEEEEEeCCCcEEEEeCCC
Confidence 99999999999999999987 6888888 678899999999999999999953 23899999999999999887
Q ss_pred CccccceeccCccccccccCCCCC---ceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEe-c---cCCCCee
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNA---HILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEV-E---EHSDKVD 667 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~---~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-~---~h~~~V~ 667 (1915)
+..+..+ ..|.. .|.+++|+|+ +.+|++|+.||.|++||+. ....+..+ . +|...|.
T Consensus 193 ~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~v~ 257 (615)
T 1pgu_A 193 FKFSASD------------RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK---SGEFLKYIEDDQEPVQGGIF 257 (615)
T ss_dssp BEEEEEE------------CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT---TCCEEEECCBTTBCCCSCEE
T ss_pred cceeeee------------cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC---CCCEeEEecccccccCCceE
Confidence 6543322 23456 8999999999 9999999999999999984 34556666 5 8999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC--------------------C---------CCcccccc-
Q psy9598 668 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL--------------------P---------HTKETSDE- 717 (1915)
Q Consensus 668 sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~--------------------~---------~~~~~~~~- 717 (1915)
+++|+ ++.+|++++.||.|++||+.+++............ . ........
T Consensus 258 ~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 258 ALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTIS 336 (615)
T ss_dssp EEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEEC
T ss_pred EEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEe
Confidence 99999 99999999999999999998776543322110000 0 00000000
Q ss_pred --------------------------------ccccccEEEEEECCC---------------------------------
Q psy9598 718 --------------------------------TNKKIKVTMVAWDAS--------------------------------- 732 (1915)
Q Consensus 718 --------------------------------~~~~~~V~~va~spd--------------------------------- 732 (1915)
..|...|.+++| ++
T Consensus 337 ~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s 415 (615)
T 1pgu_A 337 GHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASAN 415 (615)
T ss_dssp CCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEEC
T ss_pred CCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEc
Confidence 112233333333 22
Q ss_pred ----------------------------------------CCEEEEEEecCCeEEEEECCCCceE-EEeeCCCCCeEEEE
Q psy9598 733 ----------------------------------------DRWVITAINFNFQIKIWDAFNGDLV-QVLKGHTNEVFVLE 771 (1915)
Q Consensus 733 ----------------------------------------g~~L~t~s~~Dg~I~vwD~~tg~~i-~~l~gH~~~V~sl~ 771 (1915)
+.+|++++..|+.|++||+.++... ..+.+|...|++++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 495 (615)
T 1pgu_A 416 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS 495 (615)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEE
T ss_pred CCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEE
Confidence 3333333311566777776665554 66678999999999
Q ss_pred EccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC----------CCCEEEEEeCCCeEEEE
Q psy9598 772 SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP----------DGTTCALTDSYGHLLVY 841 (1915)
Q Consensus 772 ~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp----------dg~~Lasg~~dG~I~Iw 841 (1915)
|+| ++.+|++|+.||.|+|||+.+++. +..+. +.|...|++++|+| ++.+||+++.||.|+||
T Consensus 496 ~s~-~g~~l~~~~~dg~i~iw~~~~~~~--~~~~~----~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw 568 (615)
T 1pgu_A 496 ISP-SETYIAAGDVMGKILLYDLQSREV--KTSRW----AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 568 (615)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTTTEE--EECCS----CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred ECC-CCCEEEEcCCCCeEEEeeCCCCcc--eeEee----cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEE
Confidence 999 999999999999999999998877 44432 22678999999999 99999999999999999
Q ss_pred eCCCC-cccccCCC------ceeecCCCCeee-ecCCCccceeeccc
Q psy9598 842 GLGGF-KRPQNIPR------ELFFHTDYRTLN-RPNGLFEPTYDEVT 880 (1915)
Q Consensus 842 dl~s~-~~~~~l~~------~~~F~~d~~~Lv-~~~~~~~~v~D~~t 880 (1915)
++.++ ..+..+.. .+.|++++. |+ ....+.+.+||+.+
T Consensus 569 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 569 SVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred ECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99987 56555543 588999999 66 44455677999764
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.9e-36 Score=370.21 Aligned_cols=295 Identities=20% Similarity=0.335 Sum_probs=248.8
Q ss_pred eeeeEEecCCCCcEEEEEE-----cC-CCCEEEEEECCCcEEEEECCC-------CcEEEEEeCCCCCEEEEEEeCCCCE
Q psy9598 466 LRQHYVNLGHLSAVFCVLF-----DK-LGEVIVTGADDLLIKLWRARD-------GKLLATLRGCSGEISDIAIDNRNIL 532 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vaf-----sp-dg~~LaTGs~Dg~I~IWd~~t-------g~~~~~l~gH~~~I~~Lafspdg~~ 532 (1915)
+.+...|.||.+.|+||+| ++ ++.+||||+.|++|+|||+.+ +.+...+.+|...|++++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 4556789999999999999 76 999999999999999999874 3567889999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccc
Q psy9598 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 533 LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~ 612 (1915)
|++|+.|++|+|||+.++.++..+.+|.+.|++++|+|+ +.+|++|+.|++|++||+..... .. ..
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~----~~~l~s~~~d~~i~~wd~~~~~~---~~-------~~ 156 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD----NRQILSAGAEREIKLWNILGECK---FS-------SA 156 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS----TTEEEEEETTSCEEEEESSSCEE---EE-------CC
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC----CCEEEEEcCCCEEEEEeccCCce---ee-------ee
Confidence 999999999999999999999999999999999999994 48999999999999999873311 00 01
Q ss_pred ccCCCCCceEEEEECCCC----------cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe
Q psy9598 613 RIRPGNAHILCSSFSPGG----------LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg----------~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 682 (1915)
....|...|.+++|+|++ .+|++|+.||.|++||.. ......+.+|...|.+++|+|+|.+|++|+
T Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----FQIRYTFKAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----TEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----CceeEEEcCccccceEEEECCCCCEEEEEc
Confidence 123567889999999987 789999999999999952 345567889999999999999999999999
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE--Ee
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ--VL 760 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~--~l 760 (1915)
.||.|+|||+....... ....+...|.+++|+|++.+|+++ . |+.|++|++.++.... .+
T Consensus 233 ~dg~v~iwd~~~~~~~~----------------~~~~~~~~v~~v~~sp~~~~la~~-~-d~~v~iw~~~~~~~~~~~~~ 294 (343)
T 2xzm_R 233 KDKKLLIWDILNLTYPQ----------------REFDAGSTINQIAFNPKLQWVAVG-T-DQGVKIFNLMTQSKAPVCTI 294 (343)
T ss_dssp TTCEEEEEESSCCSSCS----------------EEEECSSCEEEEEECSSSCEEEEE-E-SSCEEEEESSSCCSCSEEEC
T ss_pred CCCeEEEEECCCCcccc----------------eeecCCCcEEEEEECCCCCEEEEE-C-CCCEEEEEeCCCCCCceEEe
Confidence 99999999985432110 001123469999999999887654 4 8889999998876543 44
Q ss_pred e-----------CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCC
Q psy9598 761 K-----------GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 761 ~-----------gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
. +|...|++++|+| ++.+|++|+.||+|+||++.++
T Consensus 295 ~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 295 EAEPITKAEGQKGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCCSGGGBTTBCCSCCCEEEEEECS-SSCCEEEEETTSEEEEEEEEEE
T ss_pred ecCcchhhhhhcCCCCceEEEEECC-CCCeEEEecCCceEEEEEEEcc
Confidence 3 7888999999999 9999999999999999998654
No 21
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=367.14 Aligned_cols=292 Identities=20% Similarity=0.311 Sum_probs=254.9
Q ss_pred cEEEEEeCCCCCEEEEEEeCC----CCEEEEEeCCCcEEEEECCCCce--EEEeecCCCCeEEEEeccCccCCCcEEEEE
Q psy9598 509 KLLATLRGCSGEISDIAIDNR----NILLAAGTVDKTIRIWNLQTLAP--ISVLVGHQGIITGVNFCPLEVNGFNYLAST 582 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspd----g~~LaSgs~DgtIrVWDl~tg~~--~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg 582 (1915)
.+...+.+|.+.|++|+|+++ +.+|+||+.|++|+||++.++.. ...+.+|...|.+++|++. +.+|++|
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~----~~~l~s~ 98 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT----LPIAASS 98 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS----SSEEEEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC----CCEEEEE
Confidence 345567899999999999874 67999999999999999987654 4568899999999999984 4899999
Q ss_pred eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC
Q psy9598 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH 662 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h 662 (1915)
+.|++|++||+.++..+..+. .+...+.+++|+|++.+|++|+.+|.|++|++. .......+..|
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~---~~~~~~~~~~~ 163 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSID------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE---SGKKEYSLDTR 163 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEE------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETT---TCSEEEEEECS
T ss_pred eCCCcEEEEECCCCCEEEEEe------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC---CCceeEEecCC
Confidence 999999999998876443332 345678899999999999999999999999994 34556778889
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 663 SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 663 ~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
...|.+++|+|+|.+|++|+.||.|++||+.+++.... ...|...|.+++|+|++.+|++++.
T Consensus 164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~----------------~~~h~~~v~~l~~spd~~~l~s~s~- 226 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT----------------LEGHAMPIRSLTFSPDSQLLVTASD- 226 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----------------ECCCSSCCCEEEECTTSCEEEEECT-
T ss_pred CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE----------------EcccCCceeEEEEcCCCCEEEEEcC-
Confidence 99999999999999999999999999999998875432 2246678999999999999999998
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW 822 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf 822 (1915)
|+.|+|||+.++.++..+.+|...|++++|+| ++.+|++|+.||+|+|||+.++.+ +..+. .|.+.|.+++|
T Consensus 227 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~-----~h~~~v~~v~~ 298 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTC--VHTFF-----DHQDQVWGVKY 298 (321)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE--EEEEC-----CCSSCEEEEEE
T ss_pred CCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEE--EEEEc-----CCCCcEEEEEE
Confidence 99999999999999999999999999999999 999999999999999999999887 66554 46789999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCC
Q psy9598 823 SPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 823 Spdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
+|+|.+|++++.||.|+|||+.
T Consensus 299 s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 299 NGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999963
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-35 Score=363.63 Aligned_cols=294 Identities=16% Similarity=0.215 Sum_probs=257.9
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
.....++.+|.+.|++++|+|++.+|++|+.||+|+|||+.++..+..+..|...|.+++|+|+ +.+|++|+.|+.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~d~~ 120 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS----GNYVACGGLDNI 120 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT----SSEEEEEETTCE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC----CCEEEEEeCCCe
Confidence 3567789999999999999999999999999999999999999999999999999999999994 489999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
|++|++.+..... .....+.+|...|.++.|++++. |++|+.||.|++||+. ....+..+.+|.+.|.
T Consensus 121 v~iw~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~---~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 121 CSIYNLKTREGNV--------RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE---TGQQTTTFTGHTGDVM 188 (340)
T ss_dssp EEEEETTTCSBSC--------EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT---TTEEEEEECCCSSCEE
T ss_pred EEEEECccCCCcc--------eeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECC---CCcEEEEEcCCCCceE
Confidence 9999997753211 11223456788999999998875 8899999999999993 4456778899999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy9598 668 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747 (1915)
Q Consensus 668 sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~ 747 (1915)
+++|+|++.+|++|+.||+|++||+.++..... ...|...|++++|+|++.+|++++. ||.|+
T Consensus 189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~----------------~~~h~~~v~~v~~~p~~~~l~s~s~-d~~v~ 251 (340)
T 1got_B 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT----------------FTGHESDINAICFFPNGNAFATGSD-DATCR 251 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEE----------------ECCCSSCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE----------------EcCCcCCEEEEEEcCCCCEEEEEcC-CCcEE
Confidence 999999999999999999999999998765432 2346778999999999999999998 99999
Q ss_pred EEECCCCceEEEeeC--CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 748 IWDAFNGDLVQVLKG--HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 748 vwD~~tg~~i~~l~g--H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
+||+.++..+..+.. +...|++++|+| ++.+|++|+.||.|+|||+.++.. +..+. .|.+.|.+++|+|+
T Consensus 252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~--~~~~~-----~h~~~v~~~~~s~d 323 (340)
T 1got_B 252 LFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADR--AGVLA-----GHDNRVSCLGVTDD 323 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE--EEEEE-----CCSSCEEEEEECTT
T ss_pred EEECCCCcEEEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcE--eeEee-----cCCCcEEEEEEcCC
Confidence 999999988877753 335799999999 999999999999999999988877 55554 56789999999999
Q ss_pred CCEEEEEeCCCeEEEEe
Q psy9598 826 GTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 826 g~~Lasg~~dG~I~Iwd 842 (1915)
|.+||+|+.||.|+||+
T Consensus 324 g~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 324 GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCccEEecC
Confidence 99999999999999996
No 23
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-36 Score=413.26 Aligned_cols=362 Identities=11% Similarity=0.089 Sum_probs=267.6
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg 550 (1915)
...||.+.|+||+|+|+|.+||+|+.||+|+||+..++.++..+ .|...|.+|+|+| |.+|++|+.|++|+|||+.++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 34599999999999999999999999999999999888777665 4888999999999 889999999999999999999
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG- 629 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd- 629 (1915)
+++..+. |.+.|++++|+|+ +.+|++|+.||+|++||+.++... .............+..|.+.|.+++|+|+
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~----g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~ 163 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDAS----LDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRD 163 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTT----CSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred cEEEEEc-CCCCEEEEEECCC----CCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCC
Confidence 9998886 7789999999994 589999999999999999877532 11110000000223567889999999996
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccC------------------CCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH------------------SDKVDSIQWSHSHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h------------------~~~V~sl~fspdg~~L~sgs~DG~I~IWD 691 (1915)
+..|++|+.||.| |||+.. ...+..+..| ...|.+++|+|+|.+|++|+.||+|+|||
T Consensus 164 ~~~l~~g~~dg~v-lWd~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 164 IGTVLISYEYVTL-TYSLVE---NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp EEEEEEECSSCEE-EEETTT---TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCEEEEEeCCCcE-EEECCC---CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 5789999999999 999943 3344445444 57899999999999999999999999999
Q ss_pred ccCCceEEeeec----ccc------------c------------CCC--Cccccc-c-----------------------
Q psy9598 692 YKCSQWRFIRLD----MNT------------C------------LPH--TKETSD-E----------------------- 717 (1915)
Q Consensus 692 l~~~~~~~~~~~----~~~------------~------------~~~--~~~~~~-~----------------------- 717 (1915)
+.+++.+..... ... . .+. ...... .
T Consensus 240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~ 319 (902)
T 2oaj_A 240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT 319 (902)
T ss_dssp TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGC
T ss_pred CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcccc
Confidence 988876542100 000 0 000 000000 0
Q ss_pred -------------------ccccccEEEEEECC----------CCCEEEEEEecCCeEEEEECCCCceEEE---------
Q psy9598 718 -------------------TNKKIKVTMVAWDA----------SDRWVITAINFNFQIKIWDAFNGDLVQV--------- 759 (1915)
Q Consensus 718 -------------------~~~~~~V~~va~sp----------dg~~L~t~s~~Dg~I~vwD~~tg~~i~~--------- 759 (1915)
..+...|..+++.+ +...+++++. ||.|++||+.+|.....
T Consensus 320 s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~-dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 320 SYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG-NGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp CHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET-TSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred chhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC-CCcEEEEECCCCCcccccccCCCccc
Confidence 01123344555443 2335666665 88899999877643321
Q ss_pred --------------------------------eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeee
Q psy9598 760 --------------------------------LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN 807 (1915)
Q Consensus 760 --------------------------------l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~ 807 (1915)
+.||...+.+++|+| ++++|+||+.||+|++||+.++.......+..
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~ 477 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEV 477 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEE
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEe
Confidence 234444455556677 88999999999999999999885421122221
Q ss_pred ee----cCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 808 IV----EGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 808 ~~----~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
.+ ...|...|++++|+|||++||+|+.||+|+||++.++
T Consensus 478 ~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 478 NLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp EHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred echhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 11 1145678999999999999999999999999999876
No 24
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=100.00 E-value=5.3e-38 Score=371.78 Aligned_cols=239 Identities=21% Similarity=0.292 Sum_probs=180.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q psy9598 1365 EWPQGDRDATCEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAAN 1444 (1915)
Q Consensus 1365 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~N 1444 (1915)
+|........+..++..+.. .++.++++|+.||++..+|+||+||++||||+||++|| ..+|.++++|.+||+|||.|
T Consensus 23 ~~~~p~~~~~~~~~L~~~~~-~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl-~~y~~s~~~f~~D~~li~~N 100 (311)
T 2r0y_A 23 DWHIPKFNRFISFTLDVLID-KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKN 100 (311)
T ss_dssp CCCCTTHHHHHHHHHHHHHH-HSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC-CCSTTHHHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHHHHHHHH-cCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH-hcccCCHHHHHHHHHHHHHH
Confidence 44444445555566665554 57789999999999999999999999999999999999 34444899999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHhCCCCCCccchhhhhcccccCCCChhhhhhhhhhhccccCCcchhhhhHHHhhh
Q psy9598 1445 AEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQ 1524 (1915)
Q Consensus 1445 a~~yN~~~s~i~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1524 (1915)
|++||+++|.|+++|+.|.++|.+.+..... ....... . + +.+ .+........
T Consensus 101 a~~yN~~~s~i~~~A~~l~~~~~~~~~k~k~---------~~~~~~i-~---~---~~k-----------~~l~~~~~~l 153 (311)
T 2r0y_A 101 CQAYNEYDSLIVKNSMQVVMLIEFEVLKAKN---------LKRNYLI-N---S---EVK-----------AKLLHYLNKL 153 (311)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHT---------GGGCCBC-C---H---HHH-----------HHHHHHHHHH
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHhhccc---------CCCCCCC-C---h---HHH-----------HHHHHHHHHH
Confidence 9999999999999999999999887764210 0000000 0 0 000 0000000000
Q ss_pred hhcCCchhhHHHHHHHHHHHH-------cCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHH
Q psy9598 1525 KKLKRPFNWKNECREVLETLW-------VCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597 (1915)
Q Consensus 1525 ~~~~~~~~~~~~~~~ll~~l~-------~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv 1597 (1915)
.... ...+..++.... .++.++||+.||++.++||||+||++||||+||++||++|.|.++++|..||
T Consensus 154 -~~~~----~~~i~~~l~~~r~~k~~~~~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv 228 (311)
T 2r0y_A 154 -VDAT----EKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDM 228 (311)
T ss_dssp -HHCC----HHHHHHHHHGGGSCSSCCCSSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHH
T ss_pred -Hhhh----HHHHHHHHhccccccccccCCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHH
Confidence 0000 011122221111 3567999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH-HHHHhh
Q psy9598 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRR-LTVRWN 1638 (1915)
Q Consensus 1598 ~lif~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~-~~~~~~ 1638 (1915)
+|||+||++||+++ |.||.+|..|+++|++++++ +...+.
T Consensus 229 ~Lif~N~~~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~p~~~ 269 (311)
T 2r0y_A 229 LLVFQNAHIFNDPS-ALIYKDATTLTNYFNYLIQKEFFPELQ 269 (311)
T ss_dssp HHHHHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 99999999999987 99999999999999999998 344433
No 25
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-36 Score=412.75 Aligned_cols=416 Identities=13% Similarity=0.056 Sum_probs=299.2
Q ss_pred ccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEE
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 525 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~La 525 (1915)
..++|+.++.+.+|+... ...... ..|...|++|+|+| |++||+|+.|++|+|||+.+++++.++. |.+.|++++
T Consensus 31 ~lAsgs~Dg~I~lw~~~~--~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~ 105 (902)
T 2oaj_A 31 LLAIATVTGEVHIYGQQQ--VEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSID 105 (902)
T ss_dssp EEEEEETTSEEEEECSTT--CEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEE
T ss_pred EEEEEeCCCEEEEEeCCC--cEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEE
Confidence 456788999999997543 333333 46889999999999 8899999999999999999999999987 778999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceE-----------EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLAPI-----------SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~~~-----------~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~ 594 (1915)
|+|++.+|++|+.||+|++||+.++.+. ..+.+|.+.|++|+|+|. +...|++|+.||+| +||+.
T Consensus 106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~---~~~~l~~g~~dg~v-lWd~~ 181 (902)
T 2oaj_A 106 TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR---DIGTVLISYEYVTL-TYSLV 181 (902)
T ss_dssp CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT---EEEEEEEECSSCEE-EEETT
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC---CCCEEEEEeCCCcE-EEECC
Confidence 9999999999999999999999988764 234679999999999994 34789999999999 99999
Q ss_pred cCccccceeccCccccc------cccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE--Ee---cc--
Q psy9598 595 LDIDISKTVFHEPVMFN------ERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL--EV---EE-- 661 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~------~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~--~l---~~-- 661 (1915)
++..+..+..+.+.... .....|...|.+++|+|+|.+|++|+.||.|+|||+... ..+. .+ ..
T Consensus 182 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g---~~~~~r~l~~~~~~~ 258 (902)
T 2oaj_A 182 ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG---HMIMARTVFETEINV 258 (902)
T ss_dssp TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC---CEEEEECSSCSCTTS
T ss_pred CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---cEEEEEeecccccCC
Confidence 88655444322100000 112234578999999999999999999999999999542 2222 12 11
Q ss_pred -----------CCCCeeEEEEcC----CC-CEEEEEeCC-----CcEEEEEccC------------------CceEEee-
Q psy9598 662 -----------HSDKVDSIQWSH----SH-LRFVSGSRD-----GTALIWYYKC------------------SQWRFIR- 701 (1915)
Q Consensus 662 -----------h~~~V~sl~fsp----dg-~~L~sgs~D-----G~I~IWDl~~------------------~~~~~~~- 701 (1915)
|...|.+++|++ ++ .+|++|+.| +.+.+|++.. .......
T Consensus 259 ~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 338 (902)
T 2oaj_A 259 PQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFP 338 (902)
T ss_dssp CCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEEC
T ss_pred CCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEe
Confidence 345799999954 33 466777665 3788887420 0000000
Q ss_pred -----------ecc---------c-----------cc------CCCCcc------cc-----------------------
Q psy9598 702 -----------LDM---------N-----------TC------LPHTKE------TS----------------------- 715 (1915)
Q Consensus 702 -----------~~~---------~-----------~~------~~~~~~------~~----------------------- 715 (1915)
... . .. ..+... ..
T Consensus 339 ~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~ 418 (902)
T 2oaj_A 339 LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWL 418 (902)
T ss_dssp CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHH
T ss_pred cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHH
Confidence 000 0 00 000000 00
Q ss_pred -----------ccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE----EE--ee-----CCCCCeEEEEEc
Q psy9598 716 -----------DETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV----QV--LK-----GHTNEVFVLESH 773 (1915)
Q Consensus 716 -----------~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i----~~--l~-----gH~~~V~sl~~s 773 (1915)
...+|...+.+++|+|++++|++++. |++|++||+.++.+. .. +. +|...|++|+|+
T Consensus 419 ~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~-DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafs 497 (902)
T 2oaj_A 419 GALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHS-NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA 497 (902)
T ss_dssp HHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEET-TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEE
T ss_pred HHHhcccCCCCcccCCcCCCCcccccccCcEEEEecC-CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEec
Confidence 01122333444566789999999998 999999999887531 11 11 899999999999
Q ss_pred cCCCCEEEEEecCceEEEEECCCCcccc----------------------------------------ceeeeeeecCCC
Q psy9598 774 PFDSRVLLSAGHDGLIIIWDILSSKQRG----------------------------------------YKWFHNIVEGQG 813 (1915)
Q Consensus 774 p~dg~~LaSgs~DG~I~IWdl~s~~~~~----------------------------------------~~~~~~~~~~~~ 813 (1915)
| ++.+||+|+.||+|+||++.+++..+ ...+ ..+ ..|
T Consensus 498 p-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~l-~~h 574 (902)
T 2oaj_A 498 A-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS-TAV-HAN 574 (902)
T ss_dssp T-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE-EEE-CCC
T ss_pred C-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee-EEE-EcC
Confidence 9 99999999999999999998763100 0001 112 237
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc-----ccC-------CCceeec-----CCC---CeeeecC-CCc
Q psy9598 814 EGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRP-----QNI-------PRELFFH-----TDY---RTLNRPN-GLF 872 (1915)
Q Consensus 814 ~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~-----~~l-------~~~~~F~-----~d~---~~Lv~~~-~~~ 872 (1915)
.+.|++++||||| +||+|+.||+|+|||+.+...+ ..+ ...+.|+ +|+ +.|+..+ .+.
T Consensus 575 ~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t 653 (902)
T 2oaj_A 575 KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE 653 (902)
T ss_dssp SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence 7899999999999 9999999999999999876543 122 2368899 886 6666443 455
Q ss_pred cceeec
Q psy9598 873 EPTYDE 878 (1915)
Q Consensus 873 ~~v~D~ 878 (1915)
+.+||+
T Consensus 654 v~~wd~ 659 (902)
T 2oaj_A 654 VITYKI 659 (902)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 789998
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.2e-35 Score=353.72 Aligned_cols=298 Identities=24% Similarity=0.406 Sum_probs=256.8
Q ss_pred CceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q psy9598 464 SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 543 (1915)
Q Consensus 464 ~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIr 543 (1915)
..+.+..++.||...|++++|+|+|++||+|+.||.|+||++.++.....+.+|...|.+++|+|++++|++|+.|+.|+
T Consensus 11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 544 VWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
|||+.++.++..+.+|...|.+++|+|. +.+|++|+.||+|++||+.++..+.. +..|...|.+
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~------------~~~~~~~v~~ 154 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQ----SNLIVSGSFDESVRIWDVKTGKCLKT------------LPAHSDPVSA 154 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSS----SSEEEEEETTSCEEEEETTTCCEEEE------------ECCCSSCEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCEEEEE------------ecCCCCcEEE
Confidence 9999999999999999999999999994 48999999999999999987754322 2346688999
Q ss_pred EEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe-ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 624 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 624 l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
++|+|++.+|++|+.||.|++||+.. ...+..+ ..+...+.+++|+|++.+|++++.||.|++||+.++.......
T Consensus 155 ~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 155 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT---CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC---CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 99999999999999999999999943 2333333 4567789999999999999999999999999999887544321
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
... .....+......+++.+|++++. ||.|++||+.+++++..+.+|...|.+++|+| ++.+|++
T Consensus 232 ~~~-------------~~~~~~~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s 296 (312)
T 4ery_A 232 GHK-------------NEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIAS 296 (312)
T ss_dssp SSC-------------CSSSCCCEEEECSSSCEEEECCT-TSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEE
T ss_pred ecC-------------CceEEEEEEEEeCCCcEEEEECC-CCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEE
Confidence 100 01112223334467888888887 99999999999999999999999999999999 9999999
Q ss_pred Ee--cCceEEEEECC
Q psy9598 783 AG--HDGLIIIWDIL 795 (1915)
Q Consensus 783 gs--~DG~I~IWdl~ 795 (1915)
++ .||+|+||+..
T Consensus 297 ~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 297 AALENDKTIKLWKSD 311 (312)
T ss_dssp EECTTTCCEEEEECC
T ss_pred EEccCCccEEEecCC
Confidence 87 69999999864
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-35 Score=373.58 Aligned_cols=299 Identities=25% Similarity=0.374 Sum_probs=248.5
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC------------------CEEEEEEeCCCCEEE
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSG------------------EISDIAIDNRNILLA 534 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~------------------~I~~Lafspdg~~La 534 (1915)
.+|.+.|+|++|+|+|++||+|+ ++.|+||++.++..+..+.+|.. .|++++|+|+|++||
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 37999999999999999999987 67999999999999988876643 399999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccccc
Q psy9598 535 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI 614 (1915)
Q Consensus 535 Sgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~ 614 (1915)
+|+.|++|+|||+.+++.+..+.+|...|++++|+|+ +.+|++|+.|++|++||+.++.....+.
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~----~~~l~s~s~d~~v~iwd~~~~~~~~~~~----------- 204 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS----GDKLVSGSGDRTVRIWDLRTGQCSLTLS----------- 204 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT----SSEEEEEETTSEEEEEETTTTEEEEEEE-----------
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC----CCEEEEecCCCcEEEEECCCCeeEEEEE-----------
Confidence 9999999999999999999999999999999999994 4899999999999999998876433322
Q ss_pred CCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEe-------ccCCCCeeEEEEcCCCCEEEEEeCCCc
Q psy9598 615 RPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEV-------EEHSDKVDSIQWSHSHLRFVSGSRDGT 686 (1915)
Q Consensus 615 ~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-------~~h~~~V~sl~fspdg~~L~sgs~DG~ 686 (1915)
+...+.+++|+| ++.+|++|+.||.|+|||+... ..+..+ .+|...|.+++|+|+|.+|++|+.||+
T Consensus 205 --~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 205 --IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG---FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp --CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC---CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred --cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC---cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 236789999999 8999999999999999998432 333333 579999999999999999999999999
Q ss_pred EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCC
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNE 766 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~ 766 (1915)
|++||+.+........ ............+|...|.+++|++++.+|++++. |+.|++||+.++.++..+.+|.+.
T Consensus 280 v~~wd~~~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-D~~v~iwd~~~~~~~~~l~~h~~~ 354 (393)
T 1erj_A 280 VKLWNLQNANNKSDSK----TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKSGNPLLMLQGHRNS 354 (393)
T ss_dssp EEEEEC-------------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEEEECCCCCCccccc----CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEECCCCCC
Confidence 9999998654221100 00001111233467788999999999999999998 999999999999999999999999
Q ss_pred eEEEEEccC-----CCCEEEEEecCceEEEEECCCC
Q psy9598 767 VFVLESHPF-----DSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 767 V~sl~~sp~-----dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
|.+++|++. ++.+|+||+.||+|+||++...
T Consensus 355 v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 355 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999862 5789999999999999998643
No 28
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=363.80 Aligned_cols=316 Identities=20% Similarity=0.255 Sum_probs=255.2
Q ss_pred CcEEEEEeCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE---EeecCCCCeEEEEeccCccCCCcEEEEEe
Q psy9598 508 GKLLATLRGCSG-EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS---VLVGHQGIITGVNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 508 g~~~~~l~gH~~-~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~---~l~~h~~~V~sl~fsp~~~~d~~~L~sgs 583 (1915)
..++.++.+|.. .|.+|+|+|+|.+||+|+.|++|+|||+.++.... ...+|...|++++|+|+ +.+|++|+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~----g~~l~s~s 80 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC----GNYLASAS 80 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT----SSEEEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC----CCEEEEEE
Confidence 357788999988 99999999999999999999999999998876432 23689999999999994 58999999
Q ss_pred CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC
Q psy9598 584 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~ 663 (1915)
.|++|++|++..+... ....+.+|...|.+++|+|+|.+|++|+.|+.|+|||+........+..+.+|.
T Consensus 81 ~D~~v~iw~~~~~~~~----------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~ 150 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFE----------CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT 150 (345)
T ss_dssp TTSCEEEEEECCC-EE----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC
T ss_pred CCCcEEEEEccCCCeE----------EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC
Confidence 9999999998765321 112344678999999999999999999999999999996555455667788999
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
..|.+++|+|++.+|++|+.||+|++||+..+.+.... ...+|...|++++|+|+|.+|++++. |
T Consensus 151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~--------------~~~~h~~~v~~l~~sp~g~~l~s~s~-D 215 (345)
T 3fm0_A 151 QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA--------------TLEGHESTVWSLAFDPSGQRLASCSD-D 215 (345)
T ss_dssp SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE--------------EECCCSSCEEEEEECTTSSEEEEEET-T
T ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE--------------EecCCCCceEEEEECCCCCEEEEEeC-C
Confidence 99999999999999999999999999999877643211 13357788999999999999999998 9
Q ss_pred CeEEEEECCC---------------CceEEEeeC-CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc--ceee
Q psy9598 744 FQIKIWDAFN---------------GDLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG--YKWF 805 (1915)
Q Consensus 744 g~I~vwD~~t---------------g~~i~~l~g-H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~--~~~~ 805 (1915)
++|+||+... ..++..+.+ |...|++++|+| ++.+|++++.|+.|+||++..+.... ...+
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 294 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSL 294 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence 9999999632 134556665 889999999999 88999999999999999997654211 1112
Q ss_pred eeeecCCCCcceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 806 HNIVEGQGEGALFDGKWSPDG-TTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 806 ~~~~~~~~~~~V~~vafSpdg-~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
.......|.+.|.+++|+|++ .+||+|+.||.|+||++.+.+.+...+
T Consensus 295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 222234567899999999998 599999999999999999887665443
No 29
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.8e-36 Score=371.89 Aligned_cols=324 Identities=16% Similarity=0.149 Sum_probs=237.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC------CCcEEEEECCCCce--
Q psy9598 481 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV------DKTIRIWNLQTLAP-- 552 (1915)
Q Consensus 481 ~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~------DgtIrVWDl~tg~~-- 552 (1915)
.+.+.+++.+ +.++.+.....|++.... ..+|...|++|+|+|||++||+|+. |+.|++|+..++.+
T Consensus 10 g~d~g~~~~~-~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 10 GVDLGTENLY-FQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCCCccceE-EecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 3455555545 444556788999975433 3579999999999999999999997 77899999887654
Q ss_pred --EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 553 --ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 553 --~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
.....+|...|++++|+|+ ..+++++.||+|+|||+.++.......+ ...+|...|.+++|+|+|
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d-----~~~l~~s~dg~v~lWd~~~~~~~~~~~~--------~~~~h~~~V~~v~~spdg 151 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSE-----KGILVASDSGAVELWEILEKESLLVNKF--------AKYEHDDIVKTLSVFSDG 151 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETT-----TEEEEEETTSCEEEC--------CCCCE--------EECCCSSCEEEEEECSSS
T ss_pred eEecccCCCCCCEEEEEEcCC-----CCEEEEECCCEEEEeeccccceeEEEee--------ccCCCCCCEEEEEECCCC
Confidence 3344578999999999994 3567788999999999988754332221 233678899999999999
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 631 LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 631 ~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
.+|++|+.||.|+|||+ .....+..+.+|...|.+|+|++++. +|++++.||+|+|||+++++....
T Consensus 152 ~~l~sgs~dg~v~iwd~---~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--------- 219 (357)
T 4g56_B 152 TQAVSGGKDFSVKVWDL---SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--------- 219 (357)
T ss_dssp SEEEEEETTSCEEEEET---TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB---------
T ss_pred CEEEEEeCCCeEEEEEC---CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee---------
Confidence 99999999999999998 34567778899999999999999875 789999999999999987763221
Q ss_pred CCccccccccccccEEEEEECCCC-CEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCce
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASD-RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGL 788 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg-~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~ 788 (1915)
.....+...+.+++|+|++ .+|++++. |+.|++||+.+++++..+.+|...|++|+|+|.++.+|++|+.||+
T Consensus 220 -----~~~~~~~~~v~~v~~sp~~~~~la~g~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 220 -----IDFCASDTIPTSVTWHPEKDDTFACGDE-TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp -----CCCTTCCSCEEEEEECTTSTTEEEEEES-SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred -----eeeccccccccchhhhhcccceEEEeec-ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 1123356779999999985 56666666 9999999999999999999999999999999944578999999999
Q ss_pred EEEEECCCCccccceeeeeeecCCCCcceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcc
Q psy9598 789 IIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 789 I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp-dg~~Lasg~~dG~I~Iwdl~s~~~ 848 (1915)
|+|||+.+++. +..+ .|.+.|++++|+| ++.+||+|+.||.|++|++.+...
T Consensus 294 i~iwd~~~~~~--~~~~------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 294 VAVLDADFSEV--FRDL------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEEECTTSCEE--EEEC------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEEECCCCcE--eEEC------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 99999998876 4332 4678999999998 899999999999999999976543
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.7e-35 Score=356.45 Aligned_cols=294 Identities=21% Similarity=0.281 Sum_probs=252.4
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
.+..+|.+|.+.|++|+|+|++.+|++|+.||+|+|||+.++..+..+.+|...|.+++|+|+ +++|++|+.|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~s~d~~i 79 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR----KNWIIVGSDDFRI 79 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG----GTEEEEEETTSEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC----CCEEEEECCCCEE
Confidence 456789999999999999999999999999999999999999999999999999999999995 4899999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
++||+.++..+.. +..|...|.+++|+|++.+|++|+.||+|++||+... ......+.+|...|.+
T Consensus 80 ~vwd~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~--~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 80 RVFNYNTGEKVVD------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--WALEQTFEGHEHFVMC 145 (304)
T ss_dssp EEEETTTCCEEEE------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT--TEEEEEECCCCSCEEE
T ss_pred EEEECCCCcEEEE------------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC--cchhhhhcccCCcEEE
Confidence 9999988764332 2356789999999999999999999999999999532 2344567899999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECC--CCCEEEEEEecCCe
Q psy9598 669 IQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA--SDRWVITAINFNFQ 745 (1915)
Q Consensus 669 l~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp--dg~~L~t~s~~Dg~ 745 (1915)
++|+| ++.+|++|+.||+|++||+......... ...+...+..++|++ ++.+|++++. |+.
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~~l~s~s~-D~~ 209 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---------------TTGQERGVNYVDYYPLPDKPYMITASD-DLT 209 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---------------ECCCTTCEEEEEECCSTTCCEEEEEET-TSE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---------------ccCCcCcEEEEEEEEcCCCCEEEEEcC-CCe
Confidence 99999 6789999999999999999765522211 123456788889886 6789999988 999
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 746 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
|++||+.+++++..+.+|...|.+++|+| ++.+|+||+.||+|+|||+.+++. +..+. .+...+++++|+|+
T Consensus 210 i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~--~~~~~-----~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKV--EKTLN-----VGLERSWCIATHPT 281 (304)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE--EEEEC-----CSSSSEEEEEECTT
T ss_pred EEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCce--eeecc-----CCCccEEEEEECCC
Confidence 99999999999999999999999999999 899999999999999999999887 65554 45678999999998
Q ss_pred CC--EEEEEeCCCeEEEEeCCC
Q psy9598 826 GT--TCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 826 g~--~Lasg~~dG~I~Iwdl~s 845 (1915)
+. +||+|+.+ .+.+|++..
T Consensus 282 ~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 282 GRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp CGGGCEEEEETT-EEEEEECC-
T ss_pred CCceEEEEecCC-ceEEEEecc
Confidence 75 46766654 577887764
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.5e-36 Score=376.36 Aligned_cols=318 Identities=17% Similarity=0.223 Sum_probs=266.4
Q ss_pred cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcE
Q psy9598 499 LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNY 578 (1915)
Q Consensus 499 ~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~ 578 (1915)
.+.+|+..+..+..+|.||.+.|++|+|+|++.+|+||+.||+|+|||+.++..+..+.+|...|.+++|+|+ +.+
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~----g~~ 122 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN----GQS 122 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT----SSE
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC----CCE
Confidence 3456777778888999999999999999999999999999999999999999999999999999999999994 589
Q ss_pred EEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeE
Q psy9598 579 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGIL 657 (1915)
Q Consensus 579 L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~ 657 (1915)
|++|+.|++|++|++.+..... ........+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.. ...+.
T Consensus 123 las~~~d~~v~iw~~~~~~~~~-----~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~---~~~~~ 194 (380)
T 3iz6_a 123 VACGGLDSACSIFNLSSQADRD-----GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT---GQRIS 194 (380)
T ss_dssp EEECCSSSCCEEEECCCCSSCC-----CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT---CCEEE
T ss_pred EEEeeCCCcEEEEECCCCcccc-----CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC---CcEEE
Confidence 9999999999999997643110 111122345678899999999997 45799999999999999943 33444
Q ss_pred Ee-----ccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECC
Q psy9598 658 EV-----EEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA 731 (1915)
Q Consensus 658 ~l-----~~h~~~V~sl~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp 731 (1915)
.+ .+|...|.+++|++ ++.+|++|+.||+|++||++.... ......+|...|++++|+|
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~---------------~~~~~~~h~~~v~~v~~~p 259 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR---------------AVRTYHGHEGDINSVKFFP 259 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC---------------CCEEECCCSSCCCEEEECT
T ss_pred EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc---------------ceEEECCcCCCeEEEEEec
Confidence 44 67999999999987 789999999999999999974321 1112345788899999999
Q ss_pred CCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC-------CeEEEEEccCCCCEEEEEecCceEEEEECCCCcccccee
Q psy9598 732 SDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN-------EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKW 804 (1915)
Q Consensus 732 dg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~-------~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~ 804 (1915)
++.+|++++. ||+|+|||+.++.++..+..|.. .|++++|+| ++.+|++|+.||.|+|||+.++.. +..
T Consensus 260 ~~~~l~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~--~~~ 335 (380)
T 3iz6_a 260 DGQRFGTGSD-DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEM--VLN 335 (380)
T ss_dssp TSSEEEEECS-SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCE--EEE
T ss_pred CCCeEEEEcC-CCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCce--EEE
Confidence 9999999998 99999999999999988876533 489999999 999999999999999999988776 444
Q ss_pred eeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q psy9598 805 FHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 805 ~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~ 848 (1915)
+.. +...|.+.|.+++|+|+|.+|++|+.||.|+||++.+.+.
T Consensus 336 ~~~-~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 336 LGT-LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp ECC-SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred Eec-ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 422 2235678999999999999999999999999999987643
No 32
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.6e-35 Score=401.13 Aligned_cols=375 Identities=14% Similarity=0.221 Sum_probs=308.2
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVW 545 (1915)
+...+.|.+|.+.|+|++|+|+|.+||+|+.||.|+|||+.++..+..+.+|.+.|++++|+|++.+|++|+.||.|+||
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 546 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 546 Dl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
|+.++..+..+.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++.... ..+..|...|.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~vw~~~~~~~~~-----------~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPT----KPYVLSGSDDLTVKLWNWENNWALE-----------QTFEGHEHFVMCVA 147 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSS----SSEEEEEETTSEEEEEEGGGTSEEE-----------EEEECCSSCEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCC----CCEEEEEcCCCEEEEEECCCCceEE-----------EEEcCCCCcEEEEE
Confidence 99999999999999999999999995 4899999999999999998762211 12335678899999
Q ss_pred ECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEecc-CCCCeeEEEEcC--CCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 626 FSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-HSDKVDSIQWSH--SHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 626 fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-h~~~V~sl~fsp--dg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
|+| ++..|++|+.||.|++||+... .....+.. |...|.+++|+| ++.+|++|+.||.|++||+.++......
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQS---TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCS---SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC---cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 999 8899999999999999999432 22333444 448999999999 9999999999999999999887644321
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC-EE
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VL 780 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~-~L 780 (1915)
..|...|.+++|+|++.+|++++. ||.|++||+.++..+..+..|...|++++|+| ++. ++
T Consensus 225 ----------------~~~~~~v~~~~~~~~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~ 286 (814)
T 3mkq_A 225 ----------------EGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTYKVEKTLNVGLERSWCIATHP-TGRKNY 286 (814)
T ss_dssp ----------------ECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTCSEEEEECCSSSSEEEEEECT-TCGGGE
T ss_pred ----------------cCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEEEeecCCCcEEEEEEcc-CCCceE
Confidence 236678999999999999999998 99999999999999999999999999999999 654 33
Q ss_pred EEEecCceEEEEECCCCccccceeee--------------------e------------------eecCCCCcceEEEEE
Q psy9598 781 LSAGHDGLIIIWDILSSKQRGYKWFH--------------------N------------------IVEGQGEGALFDGKW 822 (1915)
Q Consensus 781 aSgs~DG~I~IWdl~s~~~~~~~~~~--------------------~------------------~~~~~~~~~V~~vaf 822 (1915)
++++.++.+.+|++..+.. ...+. . .....+...+.+++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (814)
T 3mkq_A 287 IASGFDNGFTVLSLGNDEP--TLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAH 364 (814)
T ss_dssp EEEEETTEEEEEECSCCSC--CEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEE
T ss_pred EEEEeCCCEEEEEcCCCCc--eeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEE
Confidence 5555577888999865433 11110 0 000123346789999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCcccc-cCCCceeecCCCCeeeec-CCCccceeecc
Q psy9598 823 SPDGTTCALTDSYGHLLVYGLGGFKRPQ-NIPRELFFHTDYRTLNRP-NGLFEPTYDEV 879 (1915)
Q Consensus 823 Spdg~~Lasg~~dG~I~Iwdl~s~~~~~-~l~~~~~F~~d~~~Lv~~-~~~~~~v~D~~ 879 (1915)
+|+|++|++++ +|.+.||++....... .-...+.|++|++.++.. ..+.+.+|+..
T Consensus 365 spdg~~la~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~ 422 (814)
T 3mkq_A 365 SPNGRFVTVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNF 422 (814)
T ss_dssp CTTSSEEEEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETT
T ss_pred CCCCCEEEEec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECC
Confidence 99999999998 8999999986543221 223368899999988754 44556788643
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.8e-35 Score=359.96 Aligned_cols=323 Identities=12% Similarity=0.154 Sum_probs=276.2
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce--
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAP-- 552 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~-- 552 (1915)
|.+.|++++|+|+|++|+++..++.+.+|............+|...|++++|+|++.+|++++ ||.|+|||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 457899999999999999998888888877666555555568999999999999999999999 99999999987653
Q ss_pred -EEEee--cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 553 -ISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 553 -~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
+..+. +|...|.+++|+|+ +.+|++++.||.|++||+.++...... .+..|...|.+++|+|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~~~d~~~~~~~~~~----------~~~~~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPD----GCTLIVGGEASTLSIWDLAAPTPRIKA----------ELTSSAPACYALAISPD 152 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTT----SSEEEEEESSSEEEEEECCCC--EEEE----------EEECSSSCEEEEEECTT
T ss_pred eeecccccCCCCcEEEEEEcCC----CCEEEEEcCCCcEEEEECCCCCcceee----------ecccCCCceEEEEECCC
Confidence 33443 79999999999994 489999999999999999876421111 22346678999999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
+.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++++.||.|++||+.++......
T Consensus 153 ~~~l~~~~~dg~v~~~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------- 221 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLH---NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------- 221 (337)
T ss_dssp SSEEEEEETTSCEEEEETT---TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------
T ss_pred CCEEEEEeCCCcEEEEeCC---CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee--------
Confidence 9999999999999999994 34567778889999999999999999999999999999999987744321
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceE
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLI 789 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I 789 (1915)
.+...+.+++|+|++.+|++++. ++.|++||+.++.. ..+.+|...|.+++|+| ++.+|++++.||.|
T Consensus 222 ---------~~~~~v~~~~~s~~~~~l~~~~~-~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 289 (337)
T 1gxr_A 222 ---------DFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLL 289 (337)
T ss_dssp ---------ECSSCEEEEEECTTSSEEEEEET-TSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred ---------cCCCceEEEEECCCCCEEEEEcC-CCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcE
Confidence 24567899999999999999988 99999999988775 46778999999999999 99999999999999
Q ss_pred EEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 790 IIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 790 ~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
++|++.++.. +... .+...|.+++|+|++.+|++++.||.|++|++
T Consensus 290 ~~~~~~~~~~--~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 290 NAWRTPYGAS--IFQS------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTTCCE--EEEE------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEECCCCeE--EEEe------cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999998877 4322 35678999999999999999999999999986
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-35 Score=358.84 Aligned_cols=307 Identities=21% Similarity=0.289 Sum_probs=239.3
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC--cEEEEE-eC-CCCCEEEEEEeCCCCEEEEEeCCC
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG--KLLATL-RG-CSGEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg--~~~~~l-~g-H~~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
.+.+...|.||.+.|++++|+++ +||+|+.||+|+||++.++ .++..+ .+ |...|.+|+|+|++.+||+|+.|+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 34567789999999999999987 9999999999999999875 556666 45 999999999999999999999999
Q ss_pred cEEEEECCC-------CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccc
Q psy9598 541 TIRIWNLQT-------LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 541 tIrVWDl~t-------g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
+|+|||+.. ..++..+.+|.+.|++++|+|+ +.+|++|+.|++|++||+....... .....
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~----g~~las~s~D~~v~iwd~~~~~~~~--------~~~~~ 148 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND----GYYLATCSRDKSVWIWETDESGEEY--------ECISV 148 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTT----SCEEEEEETTSCEEEEECCTTCCCC--------EEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEeccCCCCCe--------EEEEE
Confidence 999999853 4567888999999999999994 5899999999999999995432110 11123
Q ss_pred cCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC--CCEEEEEeCCCcEEEEE
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS--HLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd--g~~L~sgs~DG~I~IWD 691 (1915)
+..|...|.+++|+|++.+|++|+.|++|+|||+... ....+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||
T Consensus 149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD-DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEE
Confidence 4467889999999999999999999999999998432 22466788999999999999998 67899999999999999
Q ss_pred ccCCceEEeeecccccCCCCcccccc-ccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc--eEEE-eeCCCC-C
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDE-TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD--LVQV-LKGHTN-E 766 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~--~i~~-l~gH~~-~ 766 (1915)
+..+.... .......... ..|...|.+++|++++ +|++++. ||.|+||+..++. .+.. +.+|.. .
T Consensus 228 ~~~~~~~~--------~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~h~~~~ 297 (330)
T 2hes_X 228 YMGDDEDD--------QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA-DGVLAVYEEVDGEWKVFAKRALCHGVYE 297 (330)
T ss_dssp EEEECTTS--------CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET-TSCEEEEEEETTEEEEEEEESCTTTTSC
T ss_pred ecCCCccc--------cceeEEeeecccccccceEEEEEcCCC-EEEEEeC-CCEEEEEEcCCCceEEEeccccccccce
Confidence 87542000 0000000011 2267889999999665 7788887 9999999998774 3333 467887 8
Q ss_pred eEEEEEccC-CCCEEEEEecCceEEEEECCC
Q psy9598 767 VFVLESHPF-DSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 767 V~sl~~sp~-dg~~LaSgs~DG~I~IWdl~s 796 (1915)
|++++|+|. ++.+|+||+.||+|+||++..
T Consensus 298 v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 298 INVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999999995 578999999999999999864
No 35
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.4e-35 Score=371.41 Aligned_cols=326 Identities=24% Similarity=0.432 Sum_probs=283.0
Q ss_pred eeEEecCCCCcE-EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 468 QHYVNLGHLSAV-FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 468 ~~~~l~gH~~~V-~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
....+.||.+.| +|+.+ +|++|++|+.||+|+|||+.+++++.++.+|.+.|.+++|+ +.+|++|+.||+|++||
T Consensus 110 ~~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eeEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 345788999875 66555 58999999999999999999999999999999999999998 56999999999999999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
+.++.++..+.+|...|.++.|++ ..|++|+.||+|++||+.++..+..+ ..|...|.+++|
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~------~~l~s~s~dg~i~~wd~~~~~~~~~~------------~~~~~~v~~~~~ 247 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE------KRVVSGSRDATLRVWDIETGQCLHVL------------MGHVAAVRCVQY 247 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEESSSCCEEEEE------------ECCSSCEEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEecC------CEEEEEeCCCEEEEEECCCCcEEEEE------------cCCcccEEEEEE
Confidence 999999999999999999999975 68999999999999999887543322 346788999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 627 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
++.+|++|+.||.|++||+. ....+..+.+|...|.+++| ++.+|++|+.||.|++||+.+++.....
T Consensus 248 --~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~----- 315 (445)
T 2ovr_B 248 --DGRRVVSGAYDFMVKVWDPE---TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL----- 315 (445)
T ss_dssp --CSSCEEEEETTSCEEEEEGG---GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE-----
T ss_pred --CCCEEEEEcCCCEEEEEECC---CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE-----
Confidence 78899999999999999984 34567788899999999999 7889999999999999999988754322
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC---CCCCeEEEEEccCCCCEEEEE
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG---HTNEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g---H~~~V~sl~~sp~dg~~LaSg 783 (1915)
..+...+.++.+ ++.+|++++. ||.|++||+.+++++..+.+ |...|++++|++ .+|++|
T Consensus 316 -----------~~~~~~v~~~~~--~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~ 378 (445)
T 2ovr_B 316 -----------TGHQSLTSGMEL--KDNILVSGNA-DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITS 378 (445)
T ss_dssp -----------CCCCSCEEEEEE--ETTEEEEEET-TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEE
T ss_pred -----------cCCcccEEEEEE--eCCEEEEEeC-CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEE
Confidence 235566777777 4678998888 99999999999999999987 888999999964 899999
Q ss_pred ecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCe----EEEEeCCCC
Q psy9598 784 GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGH----LLVYGLGGF 846 (1915)
Q Consensus 784 s~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~----I~Iwdl~s~ 846 (1915)
+.||.|+|||+.+++. +..+.......+.+.|++++|+|+|.+||+|+.||. |.|||+...
T Consensus 379 ~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 379 SDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp ETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eCCCeEEEEECCCCce--eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 9999999999999987 666644344566789999999999999999999998 999998753
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-37 Score=384.28 Aligned_cols=343 Identities=11% Similarity=0.218 Sum_probs=279.6
Q ss_pred CCCcEEEEEEcCCCC-EEEEE----------ECCCcEEEEECCCCc---EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy9598 475 HLSAVFCVLFDKLGE-VIVTG----------ADDLLIKLWRARDGK---LLATLRGCSGEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 475 H~~~V~~vafspdg~-~LaTG----------s~Dg~I~IWd~~tg~---~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
|...|+|++|+|+|. +||+| +.||.|+||++.++. ++..+ .|...|++++|+|++.+|++|+.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 345788999999987 99999 899999999999875 44444 5889999999999999999999999
Q ss_pred cEEEEECCC----CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 541 TIRIWNLQT----LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 541 tIrVWDl~t----g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
.|+|||+.+ ...+..+.+|...|++++|+|+ ++.+|++|+.||+|++||+.++....... ..........
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~ 163 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK---QDNVLASGGNNGEIFIWDMNKCTESPSNY---TPLTPGQSMS 163 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS---STTBEEEECSSSCEEBCBTTTTSSCTTTC---CCBCCCCSCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCC---CCCEEEEEcCCCeEEEEECCCCccccccc---cccccccccC
Confidence 999999987 4588899999999999999994 25899999999999999998875211000 0000112345
Q ss_pred CCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccC------CCCeeEEEEcCCC-CEEEEEeCCC---
Q psy9598 617 GNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH------SDKVDSIQWSHSH-LRFVSGSRDG--- 685 (1915)
Q Consensus 617 ~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h------~~~V~sl~fspdg-~~L~sgs~DG--- 685 (1915)
|...|.+++|+|+ +.+|++|+.||.|++||+.. ...+..+..| ...|.+++|+|++ .+|++++.||
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~ 240 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA---KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT---TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC---CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence 7788999999999 78999999999999999943 3455556555 7899999999997 6899999999
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccc-cccccEEEEEECC-CCCEEEEEEecCCeEEEEECCCCceEEEeeCC
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDET-NKKIKVTMVAWDA-SDRWVITAINFNFQIKIWDAFNGDLVQVLKGH 763 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~va~sp-dg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH 763 (1915)
.|++||++++... ..... .|...|.+++|+| ++.+|++++. ||.|++||+.+++++..+.+|
T Consensus 241 ~i~~~d~~~~~~~---------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 241 SILIWDLRNANTP---------------LQTLNQGHQKGILSLDWCHQDEHLLLSSGR-DNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp CCCEEETTSTTSC---------------SBCCCSCCSSCEEEEEECSSCSSCEEEEES-SSEEEEECSSSCCEEEEEECS
T ss_pred eEEEEeCCCCCCC---------------cEEeecCccCceeEEEeCCCCCCeEEEEeC-CCCEEEeeCCCCccceeecCC
Confidence 9999999875311 11122 5778899999999 8999999998 999999999999999999999
Q ss_pred CCCeEEEEEccCCC-CEEEEEecCceEEEEECCCCccccceeeee------------e------------------ecCC
Q psy9598 764 TNEVFVLESHPFDS-RVLLSAGHDGLIIIWDILSSKQRGYKWFHN------------I------------------VEGQ 812 (1915)
Q Consensus 764 ~~~V~sl~~sp~dg-~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~------------~------------------~~~~ 812 (1915)
...|++++|+| ++ .+|++++.||.|+||++.+... ...... + ....
T Consensus 305 ~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (416)
T 2pm9_A 305 GNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTN--TLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW 381 (416)
T ss_dssp SSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCC--SSCC----------------------CCSCCCSSCCCCCST
T ss_pred CCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCC--CcccccccccccCCcccccccccccccccccccccccCCcc
Confidence 99999999999 66 8999999999999999988764 111100 0 0001
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 813 GEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 813 ~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+...+.+++|+|+|++||+++.||.|+||++.+.
T Consensus 382 ~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 382 YGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 3456778999999999999999999999998764
No 37
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-34 Score=353.52 Aligned_cols=305 Identities=21% Similarity=0.315 Sum_probs=255.8
Q ss_pred EEEecccCCceeeeEEecCCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCCC-----cEEEEEeCCCCCEEEEEEeCC
Q psy9598 456 LMISSHKYSNLRQHYVNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRARDG-----KLLATLRGCSGEISDIAIDNR 529 (1915)
Q Consensus 456 ~~i~~~~~~~~~~~~~l~gH~~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~tg-----~~~~~l~gH~~~I~~Lafspd 529 (1915)
+.++......+.+..+|.||.+.|+||+|+|+ +++|||||.||+|+|||+.++ .+..++.+|...|++++|+|+
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d 97 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 97 (340)
T ss_dssp --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT
T ss_pred EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC
Confidence 33444556677788899999999999999997 689999999999999998764 367789999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccc
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM 609 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~ 609 (1915)
+.+|++|+.|+.|++|+...+........+...+..+.+++. +.+|++|+.|+.+++||+......
T Consensus 98 g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~s~s~d~~~~~~d~~~~~~~---------- 163 (340)
T 4aow_A 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD----NRQIVSGSRDKTIKLWNTLGVCKY---------- 163 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT----SSCEEEEETTSCEEEECTTSCEEE----------
T ss_pred CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeec----CccceeecCCCeEEEEEeCCCceE----------
Confidence 999999999999999999999999999999999999999984 489999999999999998754321
Q ss_pred cccccCCCCCceEEEEECCCC--cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcE
Q psy9598 610 FNERIRPGNAHILCSSFSPGG--LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTA 687 (1915)
Q Consensus 610 ~~~~~~~~~~~V~~l~fspdg--~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I 687 (1915)
......|...+.+++|++++ .++++|+.|+.|++||+. ....+..+.+|.+.|.+|+|+|++.+|++|+.||.|
T Consensus 164 -~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i 239 (340)
T 4aow_A 164 -TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA---NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA 239 (340)
T ss_dssp -EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT---TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred -EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC---CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 11233567889999999865 578899999999999993 455677889999999999999999999999999999
Q ss_pred EEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee------
Q psy9598 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK------ 761 (1915)
Q Consensus 688 ~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~------ 761 (1915)
++||+.+....... .+...|.+++|+|++.+++ ++. |+.|+|||+.++.++..+.
T Consensus 240 ~iwd~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~-~~~-d~~i~iwd~~~~~~~~~~~~~~~~~ 300 (340)
T 4aow_A 240 MLWDLNEGKHLYTL-----------------DGGDIINALCFSPNRYWLC-AAT-GPSIKIWDLEGKIIVDELKQEVIST 300 (340)
T ss_dssp EEEETTTTEEEEEE-----------------ECSSCEEEEEECSSSSEEE-EEE-TTEEEEEETTTTEEEEEECCC----
T ss_pred EEEEeccCceeeee-----------------cCCceEEeeecCCCCceee-ccC-CCEEEEEECCCCeEEEeccccceee
Confidence 99999987754422 1335689999999886654 555 9999999999887776654
Q ss_pred ---CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCc
Q psy9598 762 ---GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 762 ---gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
+|...|++|+|+| ++.+|+||+.||+|+|||+.+|.
T Consensus 301 ~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 301 SSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ---CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEC--
T ss_pred eccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCcC
Confidence 6888999999999 99999999999999999998875
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=100.00 E-value=2.3e-37 Score=375.54 Aligned_cols=239 Identities=21% Similarity=0.287 Sum_probs=180.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCccccccCCCCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q psy9598 1365 EWPQGDRDATCEKIITGLEEVMGLSVAEPFLVPVDISQYPAYAYVVEYPVDLTTLRARFQNRFYRRITSAQFDVRYLAAN 1444 (1915)
Q Consensus 1365 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~rl~~~~Y~~~~~~~~D~~l~~~N 1444 (1915)
+|.-..-...|..++..+.. .++.++++|+.||+...+||||+||++||||+||++|| ..+|.++++|.+||+|||+|
T Consensus 73 ~~~~~~~~~~~~~~l~~l~~-~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl-~~y~~~~~~f~~D~~li~~N 150 (361)
T 2r10_A 73 DWHIPKFNRFISFTLDVLID-KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKN 150 (361)
T ss_dssp CCCCTTHHHHHHHHHHHHHH-HTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC-CCSTTHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHH-cCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh-hccCCCHHHHHHHHHHHHHH
Confidence 45444456677777776654 35678999999999999999999999999999999999 34444899999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHhCCCCCCccchhhhhcccccCCCChhhhhhhhhhhccccCCcchhhhhHHHhhh
Q psy9598 1445 AEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSEEEEEEDSKSRQRRVRPTAVTRAQREAMNQ 1524 (1915)
Q Consensus 1445 a~~yN~~~s~i~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1524 (1915)
|.+||+++|.|+++|..|.++|.+.+...... ...... . . + .+ .+........
T Consensus 151 a~~yN~~~s~i~~~a~~l~~~~~~~~~k~k~~---------~~~~~i-~-~---~--~k-----------~~l~~~~~~l 203 (361)
T 2r10_A 151 CQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNL---------KRNYLI-N-S---E--VK-----------AKLLHYLNKL 203 (361)
T ss_dssp HHHHBCSSSHHHHHHHHHHHHHHHHHHHHHTT---------TTCCBC-C-H---H--HH-----------HHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHhhcccc---------CCcCcC-C-H---H--HH-----------HHHHHHHHHh
Confidence 99999999999999999999998877642100 000000 0 0 0 00 0000000000
Q ss_pred hhcCCchhhHHHHHHHHHHH-------HcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHH
Q psy9598 1525 KKLKRPFNWKNECREVLETL-------WVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDV 1597 (1915)
Q Consensus 1525 ~~~~~~~~~~~~~~~ll~~l-------~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv 1597 (1915)
.... ...+..++... ..++.++||+.|||..++||||+||++||||+||++||++|.|.++++|..||
T Consensus 204 -~~~~----~~~i~~~~~~~r~~~~~~~~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv 278 (361)
T 2r10_A 204 -VDAT----EKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDM 278 (361)
T ss_dssp -HHCC----HHHHHHHHHGGGCCSSCCCSSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHH
T ss_pred -hccc----hHHHHHHHhccccccccccCCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 0000 00111111111 13577999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH-HHHHhh
Q psy9598 1598 KRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRR-LTVRWN 1638 (1915)
Q Consensus 1598 ~lif~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~-~~~~~~ 1638 (1915)
+|||+||++||+++ |.||.+|..|+++|+.++++ +...+.
T Consensus 279 ~Lif~N~~~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~p~~~ 319 (361)
T 2r10_A 279 LLVFQNAHIFNDPS-ALIYKDATTLTNYFNYLIQKEFFPELQ 319 (361)
T ss_dssp HHHHHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 99999999999987 99999999999999999998 344443
No 39
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-34 Score=357.98 Aligned_cols=296 Identities=16% Similarity=0.205 Sum_probs=257.3
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
....+|.||.+.|++|+|+|++.+||||+.||+|+|||+.++.....+..|...|.+++|+|+ +.+|++|+.|+.|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~----g~~lasg~~d~~i 130 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS----GCAIACGGLDNKC 130 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT----SSEEEEESTTSEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC----CCEEEEeeCCCCE
Confidence 466789999999999999999999999999999999999999999999999999999999994 5899999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
++|++......... .....+..|...|.+++|+|++..|++|+.||+|++||+. ....+..+.+|...|.+
T Consensus 131 ~v~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~---~~~~~~~~~~h~~~v~~ 201 (354)
T 2pbi_B 131 SVYPLTFDKNENMA------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE---SGQLLQSFHGHGADVLC 201 (354)
T ss_dssp EEEECCCCTTCCSG------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT---TCCEEEEEECCSSCEEE
T ss_pred EEEEEecccccccc------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC---CCeEEEEEcCCCCCeEE
Confidence 99998754321110 1122334678899999999999999999999999999994 44567788999999999
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 669 IQWSH--SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 669 l~fsp--dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
++|+| +|.+|++|+.||+|++||++++++... ...|...|++++|+|++.+|++++. |++|
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~----------------~~~h~~~v~~v~~~p~~~~l~s~s~-D~~v 264 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA----------------FETHESDVNSVRYYPSGDAFASGSD-DATC 264 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE----------------ECCCSSCEEEEEECTTSSEEEEEET-TSCE
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE----------------ecCCCCCeEEEEEeCCCCEEEEEeC-CCeE
Confidence 99987 478999999999999999998875432 2347788999999999999999998 9999
Q ss_pred EEEECCCCceEEEeeCC--CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 747 KIWDAFNGDLVQVLKGH--TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~gH--~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
++||+.++..+..+..+ ...+.+++|+| ++.+|++|+.||+|+|||+.++.. +..+. .|.+.|.+++|+|
T Consensus 265 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~--~~~l~-----~h~~~v~~l~~sp 336 (354)
T 2pbi_B 265 RLYDLRADREVAIYSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSR--VSILF-----GHENRVSTLRVSP 336 (354)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSE--EEEEC-----CCSSCEEEEEECT
T ss_pred EEEECCCCcEEEEEcCCCcccceeEEEEeC-CCCEEEEEECCCcEEEEECCCCce--EEEEE-----CCCCcEEEEEECC
Confidence 99999999888777644 34789999999 999999999999999999988876 54443 5678999999999
Q ss_pred CCCEEEEEeCCCeEEEEe
Q psy9598 825 DGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 825 dg~~Lasg~~dG~I~Iwd 842 (1915)
+|.+||+|+.||.|+||+
T Consensus 337 dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEcCCCCEEecC
Confidence 999999999999999995
No 40
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7e-35 Score=400.88 Aligned_cols=386 Identities=18% Similarity=0.190 Sum_probs=313.5
Q ss_pred ccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEE
Q psy9598 446 REYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 525 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~La 525 (1915)
..++|+.++.+.+|+... ......+.+|.+.|++++|+|+|.+||+|+.||.|+|||+.++..+.++.+|.+.|++++
T Consensus 27 ~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 104 (814)
T 3mkq_A 27 WVLTTLYSGRVEIWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA 104 (814)
T ss_dssp EEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEEeCCCEEEEEECCC--CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEE
Confidence 345677889999997543 456678889999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCC-ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTL-APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 604 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg-~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~ 604 (1915)
|+|++.+|++|+.||+|+|||+.++ .....+.+|...|.+++|+|. ++..|++++.||+|++||+.++........
T Consensus 105 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 181 (814)
T 3mkq_A 105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK---DPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181 (814)
T ss_dssp ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT---EEEEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCcceeEEec
Confidence 9999999999999999999999987 677888999999999999992 348999999999999999987654332221
Q ss_pred cCccccccccCCCCCceEEEEECC--CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe
Q psy9598 605 HEPVMFNERIRPGNAHILCSSFSP--GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~V~~l~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 682 (1915)
.+...+.+++|+| ++.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+
T Consensus 182 -----------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 182 -----------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp -----------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT---TTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred -----------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC---CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 2336789999999 99999999999999999983 3456777889999999999999999999999
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE-EEEEecCCeEEEEECCCCceEE---
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV-ITAINFNFQIKIWDAFNGDLVQ--- 758 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L-~t~s~~Dg~I~vwD~~tg~~i~--- 758 (1915)
.||.|++||+.++...... ..+...+.+++|+|++..+ ++++. ++.+.+|++..+....
T Consensus 248 ~dg~v~vwd~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 310 (814)
T 3mkq_A 248 EDGTLKIWNSSTYKVEKTL----------------NVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLD 310 (814)
T ss_dssp TTSCEEEEETTTCSEEEEE----------------CCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEEC
T ss_pred CCCeEEEEECCCCcEEEEe----------------ecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEEC
Confidence 9999999999887644322 2345689999999999743 44455 7889999876432211
Q ss_pred ----------------------------------------EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCc
Q psy9598 759 ----------------------------------------VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 759 ----------------------------------------~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
.+..|...+.+++|+| ++.+|++++ ||.+.||++....
T Consensus 311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~ 388 (814)
T 3mkq_A 311 PVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWR 388 (814)
T ss_dssp SSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTE
T ss_pred CCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccc
Confidence 1123455688999999 999999998 8999999985433
Q ss_pred cccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCCceeecCCC----CeeeecCCCccc
Q psy9598 799 QRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDY----RTLNRPNGLFEP 874 (1915)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~~~~F~~d~----~~Lv~~~~~~~~ 874 (1915)
. .+.+.|.+++|+|+|++||+++.+|.|.+|+.-.+.. .....+.|++++ ..+.....+.+.
T Consensus 389 ~------------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~--~~v~~~~~s~dg~~~~~l~~~~~d~~v~ 454 (814)
T 3mkq_A 389 N------------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVT--SWSVPMHSAIDRLFSGALLGVKSDGFVY 454 (814)
T ss_dssp E------------EEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECT--TCCCCCSSCCCEEECSSSEEEEETTEEE
T ss_pred c------------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCcc--ceEEcCCcCccceecceEEEEecCCEEE
Confidence 2 1236788999999999999999999999997543321 223456788987 444445556677
Q ss_pred eeecccCCC
Q psy9598 875 TYDEVTNLP 883 (1915)
Q Consensus 875 v~D~~t~~~ 883 (1915)
+||+.++..
T Consensus 455 ~~d~~~~~~ 463 (814)
T 3mkq_A 455 FFDWDNGTL 463 (814)
T ss_dssp EECTTTCCE
T ss_pred EEECCcCcE
Confidence 999877643
No 41
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-34 Score=351.94 Aligned_cols=306 Identities=17% Similarity=0.259 Sum_probs=267.6
Q ss_pred eeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
.....|.||.+.|+||+|+|+|.+||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++.+|++|+.||.|+|||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 33457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC-----CeEEEEecccCccccceeccCccccccccCCCCC--
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA-- 619 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D-----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~-- 619 (1915)
+.++.++..+. |...|.+++|+|. +.+|++++.+ |.|.+||+.............. .....+..+..
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~----~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPC----GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE-EPIHKIITHEGLD 176 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTT----SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS-SCSEEEECCTTCC
T ss_pred CCCCcEEEEee-cCCCeEEEEEccC----CCEEEEecCCccCCCCEEEEEEecCCccceeeccccc-ceeeeccCCcCcc
Confidence 99999999888 8899999999994 4899999999 9999999988765433322211 11112223334
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEE
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~ 699 (1915)
.+.+++|+|++.+|++|+.||.|++||+... ...+..+..|...|.+++|+|++.+|++++.||.|++||+.++....
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCC--cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 8999999999999999999999999999431 45667788899999999999999999999999999999999887554
Q ss_pred eeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--------------eEEEEECCCCceEEEeeCCCC
Q psy9598 700 IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--------------QIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--------------~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
... +...+.+++|+|++.++++++. ++ .|++||+.+++.+..+.+|..
T Consensus 255 ~~~-----------------~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 316 (369)
T 3zwl_B 255 KYE-----------------TDCPLNTAVITPLKEFIILGGG-QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG 316 (369)
T ss_dssp EEE-----------------CSSCEEEEEECSSSSEEEEEEC-CC-------------CEEEEEETTTCCEEEEEECCSS
T ss_pred eec-----------------CCCCceeEEecCCCceEEEeec-CCCceEEEEecCCCcceeEEEecCCCcchhheecccC
Confidence 321 4567899999999999999998 66 899999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 766 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
.|++++|+| ++.+|++|+.||.|+||++..+..
T Consensus 317 ~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 317 PLNTVAISP-QGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEEECHHHH
T ss_pred cEEEEEECC-CCCEEEEEcCCCeEEEEECccccc
Confidence 999999999 999999999999999999987554
No 42
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=361.19 Aligned_cols=305 Identities=15% Similarity=0.155 Sum_probs=236.8
Q ss_pred EEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-----------CceEEEeecCCCCeEEEEe
Q psy9598 500 IKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-----------LAPISVLVGHQGIITGVNF 568 (1915)
Q Consensus 500 I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t-----------g~~~~~l~~h~~~V~sl~f 568 (1915)
.+.|++....+ ..|...|.+++|+|||++|++++ |+++++||... .........|...|++++|
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence 45677654432 35778899999999999999888 77888887321 1111222346678999999
Q ss_pred ccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEec
Q psy9598 569 CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMD 648 (1915)
Q Consensus 569 sp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~ 648 (1915)
+|+ ..|++|+.||+|+|||+.++..+..... ...+|...|++++|+|+|.+|++|+.||+|+|||+
T Consensus 91 s~d-----~~l~~~s~dg~v~lWd~~~~~~~~~~~~--------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~- 156 (344)
T 4gqb_B 91 VGE-----RGILVASDSGAVELWELDENETLIVSKF--------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL- 156 (344)
T ss_dssp ETT-----TEEEEEETTSEEEEEEECTTSSCEEEEE--------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-
T ss_pred eCC-----CeEEEEECCCEEEEEeccCCCceeEeec--------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC-
Confidence 984 4789999999999999998865433322 23467899999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEE
Q psy9598 649 GVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 649 ~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 727 (1915)
.....+..+.+|.+.|.+++|++++. +|++|+.||+|+|||+++++..... ....+...+.++
T Consensus 157 --~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--------------~~~~~~~~~~~~ 220 (344)
T 4gqb_B 157 --AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI--------------GCSAPGYLPTSL 220 (344)
T ss_dssp --TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC--------------C----CCCEEEE
T ss_pred --CCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee--------------ecceeeccceee
Confidence 34567888999999999999999985 7899999999999999988744321 112345578999
Q ss_pred EECCCC-CEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 728 AWDASD-RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 728 a~spdg-~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
+|+|++ .+|++++. ||.|+|||+.+++++..+.+|...|++|+|+|....+|+||+.||+|+|||+.+++. +. +
T Consensus 221 ~~~p~~~~~l~sg~~-dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~--~~-~- 295 (344)
T 4gqb_B 221 AWHPQQSEVFVFGDE-NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL--FR-S- 295 (344)
T ss_dssp EECSSCTTEEEEEET-TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE--EE-E-
T ss_pred eecCCCCcceEEecc-CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE--EE-E-
Confidence 999965 56667776 999999999999999999999999999999993347899999999999999988765 22 2
Q ss_pred eeecCCCCcceEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcc
Q psy9598 807 NIVEGQGEGALFDGKWSPDGT-TCALTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 807 ~~~~~~~~~~V~~vafSpdg~-~Lasg~~dG~I~Iwdl~s~~~ 848 (1915)
..|.+.|++++|+|++. +|++|+.||.|++|++.+...
T Consensus 296 ----~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 296 ----QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp ----CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred ----cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 25678999999999986 677899999999999987543
No 43
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-34 Score=381.84 Aligned_cols=362 Identities=12% Similarity=0.088 Sum_probs=288.0
Q ss_pred CeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEEeCCCC---CEEEEEEeCC
Q psy9598 454 RSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRARDGKLLATLRGCSG---EISDIAIDNR 529 (1915)
Q Consensus 454 ~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~-~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~---~I~~Lafspd 529 (1915)
+.+.+|+ .-.....+.+|...|++++|+|++. +|++|+.||.|+|||+.+++++..+.+|.. .|++++|+|+
T Consensus 142 ~~v~~~d----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 217 (615)
T 1pgu_A 142 GVFISWD----SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 217 (615)
T ss_dssp EEEEETT----TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred cEEEEEE----CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCC
Confidence 4666665 2345678899999999999999998 899999999999999999999999999999 9999999999
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceEEEe-e---cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec
Q psy9598 530 -NILLAAGTVDKTIRIWNLQTLAPISVL-V---GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 604 (1915)
Q Consensus 530 -g~~LaSgs~DgtIrVWDl~tg~~~~~l-~---~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~ 604 (1915)
+.+|++|+.||.|+|||+.+++.+..+ . +|...|.+++|+ ++ .+|++++.||.|++||+.++..+..+..
T Consensus 218 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 218 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS----QKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS----SEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC----CEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 999999999999999999999999999 6 899999999998 54 8999999999999999998765444433
Q ss_pred cCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEE-------------
Q psy9598 605 HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQW------------- 671 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~f------------- 671 (1915)
.. ......+.++.|+ ++.+|++|+.+|.|++||+.. ...+..+.+|...|.+++|
T Consensus 293 ~~--------~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~---~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~ 360 (615)
T 1pgu_A 293 DK--------QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH---DEVLKTISGHNKGITALTVNPLISGSYDGRIM 360 (615)
T ss_dssp CT--------TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE---EEEEEEECCCSSCEEEEETTTTEEEETTSCEE
T ss_pred CC--------CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC---CcEEEEEeCCCCCEEEEEecCcEEECCCCeEE
Confidence 21 1223567888886 888999999999999999842 3344455555555554444
Q ss_pred -------------------cCCCCEEEEEeCCCcEEEEEccCCce----------------------------------E
Q psy9598 672 -------------------SHSHLRFVSGSRDGTALIWYYKCSQW----------------------------------R 698 (1915)
Q Consensus 672 -------------------spdg~~L~sgs~DG~I~IWDl~~~~~----------------------------------~ 698 (1915)
.+++..|++++.||.|++|++.++.. .
T Consensus 361 ~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (615)
T 1pgu_A 361 EWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 440 (615)
T ss_dssp ETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCcee
Confidence 03366777777788887777653210 0
Q ss_pred Eeee------------------cc-cccCC-----CCccc-cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC
Q psy9598 699 FIRL------------------DM-NTCLP-----HTKET-SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 699 ~~~~------------------~~-~~~~~-----~~~~~-~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t 753 (1915)
.... .. ...+. ..... .....|...|++++|+|++.+|++++. ||.|++||+.+
T Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~ 519 (615)
T 1pgu_A 441 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV-MGKILLYDLQS 519 (615)
T ss_dssp EEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTT
T ss_pred eecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC-CCeEEEeeCCC
Confidence 0000 00 00000 00000 234557889999999999999999998 99999999999
Q ss_pred CceEEEeeC-CCCCeEEEEEccC---------CCCEEEEEecCceEEEEECCCC-ccccceeeeeeecCCCCcceEEEEE
Q psy9598 754 GDLVQVLKG-HTNEVFVLESHPF---------DSRVLLSAGHDGLIIIWDILSS-KQRGYKWFHNIVEGQGEGALFDGKW 822 (1915)
Q Consensus 754 g~~i~~l~g-H~~~V~sl~~sp~---------dg~~LaSgs~DG~I~IWdl~s~-~~~~~~~~~~~~~~~~~~~V~~vaf 822 (1915)
++++..+.+ |...|++++|+|. ++.+|++|+.||.|+|||+.++ .. +..+. .|.+.|.+++|
T Consensus 520 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~-----~h~~~v~~l~~ 592 (615)
T 1pgu_A 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI--IKALN-----AHKDGVNNLLW 592 (615)
T ss_dssp TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC--EEETT-----SSTTCEEEEEE
T ss_pred CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCcee--chhhh-----cCccceEEEEE
Confidence 999999998 9999999999994 7899999999999999999987 44 33332 56789999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 823 SPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 823 Spdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
+|+|. |++++.||.|+||++..
T Consensus 593 s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 593 ETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EETTE-EEEEETTSCEEEEEEC-
T ss_pred cCCCC-eEEecCCceEEEEeeec
Confidence 99999 99999999999999875
No 44
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.4e-35 Score=363.18 Aligned_cols=291 Identities=12% Similarity=0.191 Sum_probs=231.9
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEEC------CCcEEEEECCCCcEE----EEEeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGAD------DLLIKLWRARDGKLL----ATLRGCSGEISDIAIDNRNILLAAGTVDKT 541 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~------Dg~I~IWd~~tg~~~----~~l~gH~~~I~~Lafspdg~~LaSgs~Dgt 541 (1915)
..+|...|+||+|||||++||+|+. |+.|++|+..++... ....+|...|++|+|+|++. |++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 4589999999999999999999997 778999998877543 34457999999999999986 556788999
Q ss_pred EEEEECCCCceEE----EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 542 IRIWNLQTLAPIS----VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 542 IrVWDl~tg~~~~----~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
|+|||+.+++... ...+|.+.|++|+|+|+ +.+|++|+.||+|++||+.++..+.. +..|
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~l~sgs~dg~v~iwd~~~~~~~~~------------~~~h 180 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD----GTQAVSGGKDFSVKVWDLSQKAVLKS------------YNAH 180 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSS----SSEEEEEETTSCEEEEETTTTEEEEE------------ECCC
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCC----CCEEEEEeCCCeEEEEECCCCcEEEE------------EcCC
Confidence 9999998876543 44589999999999994 58999999999999999988754332 2356
Q ss_pred CCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEccCC
Q psy9598 618 NAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 618 ~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~~ 695 (1915)
...|.+++|++++. +|++++.||.|+|||+.... ......+..|...|.+|+|+|++ .+|++|+.|+.|++||+.++
T Consensus 181 ~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~-~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~ 259 (357)
T 4g56_B 181 SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK-PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP 259 (357)
T ss_dssp SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS-CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred CCCEEEEEEccCCCceeeeeccCCceEEEECCCCc-eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC
Confidence 78999999999875 78999999999999995432 23333455678889999999974 68899999999999999877
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
.... ....+...|++++|+|++. +|++++. |++|+|||+.+++++..+ +|.+.|++|+|+|
T Consensus 260 ~~~~----------------~~~~~~~~v~~l~~sp~~~~~lasgs~-D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP 321 (357)
T 4g56_B 260 DSAQ----------------TSAVHSQNITGLAYSYHSSPFLASISE-DCTVAVLDADFSEVFRDL-SHRDFVTGVAWSP 321 (357)
T ss_dssp GGCE----------------EECCCSSCEEEEEECSSSSCCEEEEET-TSCEEEECTTSCEEEEEC-CCSSCEEEEEECS
T ss_pred cEeE----------------EEeccceeEEEEEEcCCCCCEEEEEeC-CCEEEEEECCCCcEeEEC-CCCCCEEEEEEeC
Confidence 6332 1234677899999999984 6777776 999999999999887765 8999999999999
Q ss_pred CCCCEEEEEecCceEEEEECCCCc
Q psy9598 775 FDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
.++.+|+|||.||+|+||++.+..
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCEEEEEcCCCeEEEEECCCCC
Confidence 789999999999999999997643
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.9e-34 Score=343.53 Aligned_cols=295 Identities=20% Similarity=0.348 Sum_probs=257.1
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
..+..++.+|...|++++|+|++.+|++|+.||.|+||++.++.....+.+|...|.+++|+|+ +.+|++|+.||.
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~d~~ 88 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD----SNLLVSASDDKT 88 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT----SSEEEEEETTSE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC----CCEEEEECCCCE
Confidence 4567789999999999999999999999999999999999999999999999999999999994 489999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
|++||+.++..+.. +..|...|.+++|+|++.+|++|+.||.|++||+. ....+..+..|...|.
T Consensus 89 i~vwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~ 153 (312)
T 4ery_A 89 LKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK---TGKCLKTLPAHSDPVS 153 (312)
T ss_dssp EEEEETTTCCEEEE------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEE
T ss_pred EEEEECCCCcEEEE------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCEEEEEecCCCCcEE
Confidence 99999988754332 23567889999999999999999999999999994 3456778889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy9598 668 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747 (1915)
Q Consensus 668 sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~ 747 (1915)
+++|++++.+|++|+.||.|++||+.+++..... ...+...+.+++|+|++.+|++++. ||.|+
T Consensus 154 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~ 217 (312)
T 4ery_A 154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---------------IDDDNPPVSFVKFSPNGKYILAATL-DNTLK 217 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---------------CCSSCCCEEEEEECTTSSEEEEEET-TTEEE
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE---------------eccCCCceEEEEECCCCCEEEEEcC-CCeEE
Confidence 9999999999999999999999999987754322 1124567899999999999999998 99999
Q ss_pred EEECCCCceEEEeeCCCCCeEE--EEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 748 IWDAFNGDLVQVLKGHTNEVFV--LESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 748 vwD~~tg~~i~~l~gH~~~V~s--l~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
+||+.+++++..+.+|...+.+ ..+++.++.+|++|+.||.|+|||+.++.. +..+. .|...|.+++|+|+
T Consensus 218 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~-----~h~~~v~~~~~~p~ 290 (312)
T 4ery_A 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQ-----GHTDVVISTACHPT 290 (312)
T ss_dssp EEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE--EEEEC-----CCSSCEEEEEECSS
T ss_pred EEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh--hhhhh-----ccCCcEEEEeecCc
Confidence 9999999999999998765432 345544789999999999999999998877 55554 56789999999999
Q ss_pred CCEEEEEe--CCCeEEEEeCC
Q psy9598 826 GTTCALTD--SYGHLLVYGLG 844 (1915)
Q Consensus 826 g~~Lasg~--~dG~I~Iwdl~ 844 (1915)
+.+|++++ .||.|+||...
T Consensus 291 ~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 291 ENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSEEEEEECTTTCCEEEEECC
T ss_pred CCceEEEEccCCccEEEecCC
Confidence 99999987 69999999875
No 46
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.9e-35 Score=358.37 Aligned_cols=288 Identities=15% Similarity=0.201 Sum_probs=228.1
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC-----------CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD-----------GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKT 541 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t-----------g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dgt 541 (1915)
.+|...|.+++|+|||++|++|+ |+++++||... .........|...|++|+|++++ .|++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 35778899999999999999888 66888887321 01111222356789999999986 6889999999
Q ss_pred EEEEECCCCceEEE----eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 542 IRIWNLQTLAPISV----LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 542 IrVWDl~tg~~~~~----l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
|+|||+.+++.+.. +.+|.+.|++|+|+|+ +.+|++|+.||+|++||+.++..+.. +.+|
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd----g~~l~sgs~d~~i~iwd~~~~~~~~~------------~~~h 168 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSS----GTQAVSGSKDICIKVWDLAQQVVLSS------------YRAH 168 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTTEEEEE------------ECCC
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCC----CCEEEEEeCCCeEEEEECCCCcEEEE------------EcCc
Confidence 99999999876543 4589999999999994 58999999999999999988754332 3467
Q ss_pred CCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEE--eccCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEcc
Q psy9598 618 NAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILE--VEEHSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 618 ~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~--l~~h~~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~ 693 (1915)
...|.+++|++++. +|++|+.||+|+|||+... ..+.. ...|...+.+++|+|+ +.+|++|+.||+|+|||++
T Consensus 169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP---KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS---SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred CCceEEEEecCCCCCceeeecccccccccccccc---ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 88999999999884 7899999999999999533 33333 3456678999999985 5688999999999999999
Q ss_pred CCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEE
Q psy9598 694 CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 772 (1915)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~ 772 (1915)
+++.+.. ..+|...|++++|+|++. +|++++. |++|+|||+.+++++ .+.+|.+.|++|+|
T Consensus 246 ~~~~~~~----------------~~~h~~~v~~v~fsp~g~~~lasgs~-D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~ 307 (344)
T 4gqb_B 246 STSCVLS----------------SAVHSQCVTGLVFSPHSVPFLASLSE-DCSLAVLDSSLSELF-RSQAHRDFVRDATW 307 (344)
T ss_dssp C--CCEE----------------EECCSSCEEEEEECSSSSCCEEEEET-TSCEEEECTTCCEEE-EECCCSSCEEEEEE
T ss_pred CCcEEEE----------------EcCCCCCEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCcEE-EEcCCCCCEEEEEE
Confidence 8764332 235778899999999984 6777777 999999999988765 57899999999999
Q ss_pred ccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 773 HPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 773 sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+|.+..+|+|||.||+|++|++.+...
T Consensus 308 sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 308 SPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp CSSSTTEEEEEETTSCEEEEECCC---
T ss_pred eCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 994456888999999999999976543
No 47
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.6e-34 Score=347.40 Aligned_cols=296 Identities=18% Similarity=0.242 Sum_probs=250.8
Q ss_pred cEEEEEeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCC-----CceEEEeecCCCCeEEEEeccCccCCCcEEEEE
Q psy9598 509 KLLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQT-----LAPISVLVGHQGIITGVNFCPLEVNGFNYLAST 582 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~t-----g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg 582 (1915)
.+..+|.||.+.|++|+|++++ .+|+||+.|++|++|++.+ +.++..+.+|...|++++|+|+ +.+|++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d----g~~l~s~ 83 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD----GAYALSA 83 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT----SSEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC----CCEEEEE
Confidence 4567899999999999999965 8999999999999999864 3457789999999999999994 5899999
Q ss_pred eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC
Q psy9598 583 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH 662 (1915)
Q Consensus 583 s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h 662 (1915)
+.||+|++||+.++..+.. +.+|...|.+++|+|++.+|++|+.|++|+|||+. ...+..+.+|
T Consensus 84 s~D~~v~~wd~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~----~~~~~~~~~h 147 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQR------------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK----GQCLATLLGH 147 (319)
T ss_dssp ETTSEEEEEETTTTEEEEE------------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT----SCEEEEECCC
T ss_pred eCCCEEEEEECCCCCeeEE------------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeEEEEecc
Confidence 9999999999988754322 33577899999999999999999999999999984 3467788899
Q ss_pred CCCeeEEEEcCC------CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE
Q psy9598 663 SDKVDSIQWSHS------HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 736 (1915)
Q Consensus 663 ~~~V~sl~fspd------g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L 736 (1915)
...|.+++|+|. +..|++|+.||.|++||+.+.+.... ..+|...|.+++|+|+|.+|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----------------~~~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD----------------FIGHNSNINTLTASPDGTLI 211 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE----------------ECCCCSCEEEEEECTTSSEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee----------------ecCCCCcEEEEEEcCCCCEE
Confidence 999999999985 44899999999999999987764321 23577889999999999999
Q ss_pred EEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeec---CCC
Q psy9598 737 ITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVE---GQG 813 (1915)
Q Consensus 737 ~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~---~~~ 813 (1915)
++++. ||.|+|||+.+++++..+..| ..|.+++|+| ++.+|++++.+ .|++|++..... +..+..... ..+
T Consensus 212 ~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp-~~~~la~~~~~-~i~v~~~~~~~~--~~~~~~~~~~~~~~~ 285 (319)
T 3frx_A 212 ASAGK-DGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP-NRYWLAAATAT-GIKVFSLDPQYL--VDDLRPEFAGYSKAA 285 (319)
T ss_dssp EEEET-TCEEEEEETTTTEEEEEEECC-SCEEEEEECS-SSSEEEEEETT-EEEEEEETTEEE--EEEECCCCTTCCGGG
T ss_pred EEEeC-CCeEEEEECCCCcEEEEecCC-CcEEEEEEcC-CCCEEEEEcCC-CcEEEEeCcCee--eeccCccccccccCc
Confidence 99998 999999999999999999865 5799999999 89988888755 599999987655 333321111 123
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 814 EGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 814 ~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
...+.+++|+|||++|++|+.||.|+||++.++
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 467899999999999999999999999998764
No 48
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=346.36 Aligned_cols=308 Identities=20% Similarity=0.291 Sum_probs=238.1
Q ss_pred CCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceEEEe-ec-CCCCeEEEEeccCccCCCcEEEE
Q psy9598 506 RDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL--APISVL-VG-HQGIITGVNFCPLEVNGFNYLAS 581 (1915)
Q Consensus 506 ~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg--~~~~~l-~~-h~~~V~sl~fsp~~~~d~~~L~s 581 (1915)
.+.+++.++.+|.+.|.+++|+++ +||+|+.|++|+|||+.++ ..+..+ .+ |.+.|++|+|+|+ +.+|++
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~----~~~las 75 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH----TSLLAA 75 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT----SSEEEE
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC----CCEEEE
Confidence 356788899999999999999988 9999999999999999875 445556 44 9999999999994 489999
Q ss_pred EeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCC-CCCceeEEec
Q psy9598 582 TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGV-DSPLGILEVE 660 (1915)
Q Consensus 582 gs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~-~~~~~i~~l~ 660 (1915)
|+.|++|++||+....... ........+.+|...|.+++|+|+|.+|++|+.|++|+|||+... .....+..+.
T Consensus 76 ~s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRT-----FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp EETTSCEEEEEC------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred EeCCCcEEEEEcccCcCcc-----ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 9999999999986432100 001112334578899999999999999999999999999999432 3345667789
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC--CCEEEE
Q psy9598 661 EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS--DRWVIT 738 (1915)
Q Consensus 661 ~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd--g~~L~t 738 (1915)
+|...|.+|+|+|++.+|++|+.||+|+|||+.++.+... ....+|...|.+++|+|+ +.+|++
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~--------------~~~~~h~~~v~~~~~~~~~~~~~l~s 216 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV--------------AVLNGHEGTVWSSDFDKTEGVFRLCS 216 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE--------------EEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE--------------EEccCCCCcEEEEEecCCCCeeEEEE
Confidence 9999999999999999999999999999999876642211 123457789999999998 678888
Q ss_pred EEecCCeEEEEECCCC--------ceEEEeeC-CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeee
Q psy9598 739 AINFNFQIKIWDAFNG--------DLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIV 809 (1915)
Q Consensus 739 ~s~~Dg~I~vwD~~tg--------~~i~~l~g-H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~ 809 (1915)
++. |++|++||+.++ .++..+.+ |...|++++|++ + .+|++|+.||+|+||++.++.. ..+....
T Consensus 217 ~s~-D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~-~~l~s~~~dg~v~iw~~~~~~~---~~~~~~~ 290 (330)
T 2hes_X 217 GSD-DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-N-GLIASVGADGVLAVYEEVDGEW---KVFAKRA 290 (330)
T ss_dssp EET-TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-T-SCEEEEETTSCEEEEEEETTEE---EEEEEES
T ss_pred EeC-CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-C-CEEEEEeCCCEEEEEEcCCCce---EEEeccc
Confidence 888 999999998754 45556665 999999999997 4 4899999999999999976642 1111111
Q ss_pred cCCCCc-ceEEEEEcC--CCCEEEEEeCCCeEEEEeCCC
Q psy9598 810 EGQGEG-ALFDGKWSP--DGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 810 ~~~~~~-~V~~vafSp--dg~~Lasg~~dG~I~Iwdl~s 845 (1915)
. .|.. .|.+++|+| ++.+||+|+.||.|+||++..
T Consensus 291 ~-~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 291 L-CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp C-TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred c-ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2 3344 899999999 799999999999999999864
No 49
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-33 Score=382.35 Aligned_cols=293 Identities=22% Similarity=0.326 Sum_probs=250.6
Q ss_pred eeeEEecCCCCcEEEEEEcCCC-CEEEEEECCCcEEEEECCC-----CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLG-EVIVTGADDLLIKLWRARD-----GKLLATLRGCSGEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg-~~LaTGs~Dg~I~IWd~~t-----g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
.+...|.+|.+.|+||+|++++ .+|+||+.||+|+||++.+ +.....+.+|...|++++|++++++|+||+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4455788999999999999864 7999999999999999875 346778999999999999999999999999999
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
+|+|||+.++.++..+.+|...|++++|+|+ +.+|++|+.|++|++||+...... . ......+|...
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~s~D~~i~iwd~~~~~~~---~------~~~~~~~h~~~ 519 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD----NRQIVSASRDRTIKLWNTLGECKY---T------ISEGGEGHRDW 519 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTT----SSCEEEEETTSCEEEECTTSCEEE---E------ECSSTTSCSSC
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCC----CCEEEEEeCCCEEEEEECCCCcce---e------eccCCCCCCCc
Confidence 9999999999999999999999999999994 489999999999999997643211 1 11122357788
Q ss_pred eEEEEECCCC--cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceE
Q psy9598 621 ILCSSFSPGG--LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 698 (1915)
Q Consensus 621 V~~l~fspdg--~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~ 698 (1915)
|.|++|+|++ ..|++|+.||+|+|||+. .......+.+|.+.|.+|+|+|+|.+|++|+.||+|+|||+.++..+
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~---~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLS---NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECC---CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 9999999987 589999999999999994 34566778999999999999999999999999999999999988744
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC--------------
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT-------------- 764 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~-------------- 764 (1915)
... .+...|.+++|+|++.+|++++ ++.|+|||+.++.++..+..|.
T Consensus 597 ~~~-----------------~~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (694)
T 3dm0_A 597 YSL-----------------EANSVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAA 657 (694)
T ss_dssp ECC-----------------BCSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEEEEECCCCC-------------
T ss_pred EEe-----------------cCCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCChhhhcccccccccccccccccc
Confidence 311 1235689999999998887765 6789999999999888776432
Q ss_pred -----CCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 765 -----NEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 765 -----~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
..|++++|+| ++.+|+||+.||+|+||++.
T Consensus 658 ~~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 658 TKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ---CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred CCceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 1378999999 99999999999999999985
No 50
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.4e-33 Score=359.52 Aligned_cols=335 Identities=21% Similarity=0.349 Sum_probs=275.9
Q ss_pred eEEecCCCCcE-EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 469 HYVNLGHLSAV-FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 469 ~~~l~gH~~~V-~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
...+.||...| +|+.|+ +.+|++|+.||+|+|||+.+++++..+.+|.+.|++++|++++ +|++|+.||+|+|||+
T Consensus 114 ~~~l~~h~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 44788999884 677775 7799999999999999999999999999999999999999988 9999999999999999
Q ss_pred CCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc-----------CccccccccCC
Q psy9598 548 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH-----------EPVMFNERIRP 616 (1915)
Q Consensus 548 ~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~-----------~~~~~~~~~~~ 616 (1915)
.++.++..+.+|.+.|.+++|++.. ++.+|++|+.||+|++||+.++......... ........+.+
T Consensus 191 ~~~~~~~~~~~h~~~v~~l~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 191 KKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEESS--SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred CCCcEEEEECCCCCccEEEEEecCC--CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 9999999999999999999999743 5689999999999999999887543221111 00112334556
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~ 696 (1915)
|...|.++ ++++.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+.||.|++||+.+++
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVA---QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEETTSCEEEEETT---TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccceEEEE--cCCCCEEEEEeCCCeEEEEECC---CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 77778776 5678899999999999999993 456677889999999999999999999999999999999999887
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCC
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFD 776 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~d 776 (1915)
.... ...|...|.+++|+ +.+|++++. ||.|++||+.++.....+. |...+..++|++ +
T Consensus 344 ~~~~----------------~~~h~~~v~~~~~~--~~~l~s~s~-dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~ 402 (464)
T 3v7d_B 344 LMYT----------------LQGHTALVGLLRLS--DKFLVSAAA-DGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-S 402 (464)
T ss_dssp EEEE----------------ECCCSSCEEEEEEC--SSEEEEEET-TSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-C
T ss_pred EEEE----------------EeCCCCcEEEEEEc--CCEEEEEeC-CCcEEEEECCCCceeeeec-CCCCccEEEEEe-C
Confidence 5432 23467789999997 588999988 9999999999988776664 666788889999 8
Q ss_pred CCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy9598 777 SRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 777 g~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwd 842 (1915)
+.+|++|+ ||.|+|||+.+++. +..+. ..+.+.|.+++|+ +..++++++.+|.+.+|-
T Consensus 403 ~~~l~~~~-dg~i~iwd~~~g~~--~~~~~----~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 403 DNILVSGS-ENQFNIYNLRSGKL--VHANI----LKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp SSEEEEEE-TTEEEEEETTTCCE--EESCT----TTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCEEEEec-CCeEEEEECCCCcE--Eehhh----ccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 99999988 99999999999887 43321 2456889999997 445566667777666554
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.5e-34 Score=362.98 Aligned_cols=331 Identities=14% Similarity=0.090 Sum_probs=267.8
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
..+++++|+|+|++|++|+.||.|++||+.++.....+.+| ..+....|++++.+|++|+.||.|+|||+.++.....+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 34558999999999999999999999999888776666666 44555678999999999999999999999999999988
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++..+.. +..|...|.+++|+|++.+|++|
T Consensus 136 ~~h~~~v~~~~~~~~----~~~l~s~s~d~~i~iwd~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~s~ 199 (420)
T 3vl1_A 136 QAHVSEITKLKFFPS----GEALISSSQDMQLKIWSVKDGSNPRT------------LIGHRATVTDIAIIDRGRNVLSA 199 (420)
T ss_dssp TSSSSCEEEEEECTT----SSEEEEEETTSEEEEEETTTCCCCEE------------EECCSSCEEEEEEETTTTEEEEE
T ss_pred ccccCccEEEEECCC----CCEEEEEeCCCeEEEEeCCCCcCceE------------EcCCCCcEEEEEEcCCCCEEEEE
Confidence 999999999999994 48999999999999999988754332 23567899999999999999999
Q ss_pred eCCCeEEEEEecCCCCCceeEEecc---CCCC---------------------eeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEE---HSDK---------------------VDSIQWSHSHLRFVSGSRDGTALIWYY 692 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~---h~~~---------------------V~sl~fspdg~~L~sgs~DG~I~IWDl 692 (1915)
+.||.|++||+.. ...+..+.. |... |.+++|+|++.+|++|+.||.|++||+
T Consensus 200 ~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 276 (420)
T 3vl1_A 200 SLDGTIRLWECGT---GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV 276 (420)
T ss_dssp ETTSCEEEEETTT---TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEET
T ss_pred cCCCcEEEeECCC---CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEEC
Confidence 9999999999943 344444543 3344 444555789999999999999999999
Q ss_pred cCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCCCce-EEEeeC-CCCCeEE
Q psy9598 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFNGDL-VQVLKG-HTNEVFV 769 (1915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I~vwD~~tg~~-i~~l~g-H~~~V~s 769 (1915)
.++...... ...+...|.+++|+|++. +|++++. ||.|++||+.++.. +..+.+ |...|.+
T Consensus 277 ~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 340 (420)
T 3vl1_A 277 FSKEQTIQL---------------PSKFTCSCNSLTVDGNNANYIYAGYE-NGMLAQWDLRSPECPVGEFLINEGTPINN 340 (420)
T ss_dssp TTCCEEEEE---------------CCTTSSCEEEEEECSSCTTEEEEEET-TSEEEEEETTCTTSCSEEEEESTTSCEEE
T ss_pred CCCceeEEc---------------ccccCCCceeEEEeCCCCCEEEEEeC-CCeEEEEEcCCCcCchhhhhccCCCCceE
Confidence 987744322 123667899999999999 8888887 99999999998754 777776 6778888
Q ss_pred EEEccCCCCEEEEEecCceEEEEECCCCcccc-ceeee-eeecCCCCcceEEEEEcCCCC---EEEEEeCCCeEEEEeCC
Q psy9598 770 LESHPFDSRVLLSAGHDGLIIIWDILSSKQRG-YKWFH-NIVEGQGEGALFDGKWSPDGT---TCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~-~~~~~-~~~~~~~~~~V~~vafSpdg~---~Lasg~~dG~I~Iwdl~ 844 (1915)
+.+ + ++.+|++|+.||.|+||++....... +..+. ......+.+.|.+++|+|++. .|++++.+|.+.+|++.
T Consensus 341 ~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 341 VYF-A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEE-E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred EEe-C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 855 4 57899999999999999998743310 10000 011234668899999999999 78888889999999986
Q ss_pred C
Q psy9598 845 G 845 (1915)
Q Consensus 845 s 845 (1915)
.
T Consensus 419 ~ 419 (420)
T 3vl1_A 419 N 419 (420)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.1e-33 Score=354.11 Aligned_cols=313 Identities=13% Similarity=0.139 Sum_probs=259.5
Q ss_pred eeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc------EEEEEeCCCCCEEEEEEeCC----C---CE
Q psy9598 466 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK------LLATLRGCSGEISDIAIDNR----N---IL 532 (1915)
Q Consensus 466 ~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~------~~~~l~gH~~~I~~Lafspd----g---~~ 532 (1915)
+.....+.+|.+.|+||+|+| .+||+|+.||.|+||++.++. ++..+.+|...|++++|+++ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 445678899999999999998 799999999999999999988 78889999999999999999 9 99
Q ss_pred EEEEeCCCcEEEEECCCCce-----EEEeecC-----CCCeEEEEec----cCccCCCcE-EEEEeCCCeEEEEeccc--
Q psy9598 533 LAAGTVDKTIRIWNLQTLAP-----ISVLVGH-----QGIITGVNFC----PLEVNGFNY-LASTSTDGCIGFWKYKL-- 595 (1915)
Q Consensus 533 LaSgs~DgtIrVWDl~tg~~-----~~~l~~h-----~~~V~sl~fs----p~~~~d~~~-L~sgs~DgtI~iWDl~~-- 595 (1915)
|++|+.||.|+||++.++.. +..+.+| ...|++++|+ |. +.+ |++|+.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL----LSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--------CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC----CceEEEEEeCCCcEEEEeCCccc
Confidence 99999999999999999887 8889989 5999999999 74 478 99999999999999988
Q ss_pred ----Ccccc-----ceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc---C-
Q psy9598 596 ----DIDIS-----KTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE---H- 662 (1915)
Q Consensus 596 ----~~~~~-----~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~---h- 662 (1915)
+..+. .+... ......|...|.+++|+|++ +|++|+.||.|++||+. ....+..+.. |
T Consensus 160 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGT-----VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS---TLRPLYNFESQHSMI 230 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEE-----ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT---TTEEEEEEECCC---
T ss_pred cccccceeeccCcceeeee-----eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC---CCceeEEEecccccc
Confidence 54333 11100 00113467889999999999 99999999999999994 3456677777 8
Q ss_pred --CCCeeEEEEcCCCCEEEEEeCC---CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEE
Q psy9598 663 --SDKVDSIQWSHSHLRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 737 (1915)
Q Consensus 663 --~~~V~sl~fspdg~~L~sgs~D---G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~ 737 (1915)
...|.+++|+|++.+|++++.| |.|++||+.+++......... ...........|...|.+++|+|++.+|+
T Consensus 231 ~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 231 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT---HSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------CCBSBSSCEEEEEECSSSSEEE
T ss_pred ccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCc---ccccccccccccCCcEEEEEECCCCCEEE
Confidence 9999999999999999999999 999999999887554321100 00000011122678899999999999999
Q ss_pred EEEecCCeEEEEECCCCceEEEee------CC---------------CCCeEEEEEccCCC----------CEEEEEecC
Q psy9598 738 TAINFNFQIKIWDAFNGDLVQVLK------GH---------------TNEVFVLESHPFDS----------RVLLSAGHD 786 (1915)
Q Consensus 738 t~s~~Dg~I~vwD~~tg~~i~~l~------gH---------------~~~V~sl~~sp~dg----------~~LaSgs~D 786 (1915)
+++. ||.|+|||+.+++++..+. +| ...|++++|+| ++ .+|++|+.|
T Consensus 308 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 308 SAGW-DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp EEET-TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCTTSCEEEEEETT
T ss_pred EEeC-CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc-ccccccccccccceEEEecCC
Confidence 9998 9999999999999999999 88 99999999999 76 799999999
Q ss_pred ceEEEEECCCCc
Q psy9598 787 GLIIIWDILSSK 798 (1915)
Q Consensus 787 G~I~IWdl~s~~ 798 (1915)
|.|+||++.+++
T Consensus 386 g~i~iw~~~~g~ 397 (397)
T 1sq9_A 386 RSIRWFREAGGK 397 (397)
T ss_dssp TEEEEEEEEC--
T ss_pred CcEEEEEcCCCC
Confidence 999999998763
No 53
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.8e-33 Score=339.03 Aligned_cols=303 Identities=20% Similarity=0.260 Sum_probs=249.1
Q ss_pred CCCCcEEEEEeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCc-----eEEEeecCCCCeEEEEeccCccCCCcE
Q psy9598 505 ARDGKLLATLRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQTLA-----PISVLVGHQGIITGVNFCPLEVNGFNY 578 (1915)
Q Consensus 505 ~~tg~~~~~l~gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~tg~-----~~~~l~~h~~~V~sl~fsp~~~~d~~~ 578 (1915)
..+..+..+|.||.+.|++|+|+|+ +.+|||||.|++|+|||+.++. +...+.+|...|++++|+|+ +.+
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d----g~~ 100 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD----GQF 100 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT----SSE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC----CCE
Confidence 3445677789999999999999997 6899999999999999997643 56788999999999999994 589
Q ss_pred EEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEE
Q psy9598 579 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 579 L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~ 658 (1915)
|++|+.||.|++|+........... .+...+.++.+++++.+|++|+.|+.+++||+.. .......
T Consensus 101 l~s~~~d~~i~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~--~~~~~~~ 166 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTTGTTTRRFV------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG--VCKYTVQ 166 (340)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEEC
T ss_pred EEEEcccccceEEeecccceeeeec------------CCCCceeEEEEeecCccceeecCCCeEEEEEeCC--CceEEEE
Confidence 9999999999999988764322222 3346788999999999999999999999999842 2233445
Q ss_pred eccCCCCeeEEEEcCCC--CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE
Q psy9598 659 VEEHSDKVDSIQWSHSH--LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 736 (1915)
Q Consensus 659 l~~h~~~V~sl~fspdg--~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L 736 (1915)
..+|...|.+++|++++ .++++++.|+.|++||+.++..... ..+|...|++++|+|++.+|
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~----------------~~~h~~~v~~~~~s~~~~~l 230 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN----------------HIGHTGYLNTVTVSPDGSLC 230 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE----------------ECCCSSCEEEEEECTTSSEE
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE----------------ecCCCCcEEEEEECCCCCEE
Confidence 67899999999999875 4788999999999999998775432 23467789999999999999
Q ss_pred EEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeee----ecCC
Q psy9598 737 ITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNI----VEGQ 812 (1915)
Q Consensus 737 ~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~----~~~~ 812 (1915)
++++. ||.|++||+.++.++..+.++ ..|.+++|+| ++. +++++.||.|+|||+.++.. +..+... ....
T Consensus 231 ~s~s~-Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~-~~~-~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~ 304 (340)
T 4aow_A 231 ASGGK-DGQAMLWDLNEGKHLYTLDGG-DIINALCFSP-NRY-WLCAATGPSIKIWDLEGKII--VDELKQEVISTSSKA 304 (340)
T ss_dssp EEEET-TCEEEEEETTTTEEEEEEECS-SCEEEEEECS-SSS-EEEEEETTEEEEEETTTTEE--EEEECCC-------C
T ss_pred EEEeC-CCeEEEEEeccCceeeeecCC-ceEEeeecCC-CCc-eeeccCCCEEEEEECCCCeE--EEeccccceeeeccC
Confidence 99998 999999999999999998866 4799999999 654 56677899999999988765 4333211 1224
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 813 GEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 813 ~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
+...|++++|+|||++||+|+.||.|+||++.+|.
T Consensus 305 h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 305 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 56789999999999999999999999999999875
No 54
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.3e-33 Score=344.05 Aligned_cols=297 Identities=17% Similarity=0.284 Sum_probs=239.5
Q ss_pred cEEEEEeCCCCCEEEEEE-----eC-CCCEEEEEeCCCcEEEEECCC-------CceEEEeecCCCCeEEEEeccCccCC
Q psy9598 509 KLLATLRGCSGEISDIAI-----DN-RNILLAAGTVDKTIRIWNLQT-------LAPISVLVGHQGIITGVNFCPLEVNG 575 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Laf-----sp-dg~~LaSgs~DgtIrVWDl~t-------g~~~~~l~~h~~~V~sl~fsp~~~~d 575 (1915)
.+..+|.||.+.|++|+| ++ ++.+||||+.|++|+|||+.+ +.+...+.+|...|++++|+|.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~---- 87 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE---- 87 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS----
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC----
Confidence 456789999999999999 76 899999999999999999974 3467788999999999999994
Q ss_pred CcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCce
Q psy9598 576 FNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLG 655 (1915)
Q Consensus 576 ~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~ 655 (1915)
+.+|++|+.||+|++||+.++..+.. +.+|...|.+++|+|++.+|++|+.|+.|++||+.. ..
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~------------~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~----~~ 151 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKR------------FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG----EC 151 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEE------------EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS----CE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEE------------EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC----Cc
Confidence 48999999999999999988754322 235678999999999999999999999999999842 12
Q ss_pred eEEe---ccCCCCeeEEEEcCCC----------CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccc
Q psy9598 656 ILEV---EEHSDKVDSIQWSHSH----------LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKI 722 (1915)
Q Consensus 656 i~~l---~~h~~~V~sl~fspdg----------~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1915)
.... .+|...|.+++|+|++ .+|++|+.||+|++||.. ..... ....|..
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~----------------~~~~h~~ 214 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRY----------------TFKAHES 214 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEE----------------EEECCSS
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeE----------------EEcCccc
Confidence 2222 3789999999999987 789999999999999943 22111 1234677
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCC-CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc
Q psy9598 723 KVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG 801 (1915)
Q Consensus 723 ~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~ 801 (1915)
.|.+++|+|+|.+|++++. ||.|++||+.+ ......+ .+...|.+++|+| ++.+|+ ++.|+.|+||++.++....
T Consensus 215 ~v~~~~~s~~g~~l~sgs~-dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp-~~~~la-~~~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 215 NVNHLSISPNGKYIATGGK-DKKLLIWDILNLTYPQREF-DAGSTINQIAFNP-KLQWVA-VGTDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp CEEEEEECTTSSEEEEEET-TCEEEEEESSCCSSCSEEE-ECSSCEEEEEECS-SSCEEE-EEESSCEEEEESSSCCSCS
T ss_pred cceEEEECCCCCEEEEEcC-CCeEEEEECCCCcccceee-cCCCcEEEEEECC-CCCEEE-EECCCCEEEEEeCCCCCCc
Confidence 8999999999999999998 99999999944 4444444 3556799999999 787765 5568899999998876522
Q ss_pred ceeeeeee------cCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 802 YKWFHNIV------EGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 802 ~~~~~~~~------~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+..+.... ...+...|.+++|+|+|.+||+|+.||.|+||++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 291 VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 11222000 0134568999999999999999999999999998765
No 55
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-33 Score=350.42 Aligned_cols=292 Identities=18% Similarity=0.262 Sum_probs=242.6
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCC------------------CeEEEEeccCccCCCc
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQG------------------IITGVNFCPLEVNGFN 577 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~------------------~V~sl~fsp~~~~d~~ 577 (1915)
+|.+.|+|++|+|+|.+||+|+ +++|+||++.++..+..+.+|.. .|++++|+|+ +.
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d----g~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD----GK 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT----SS
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC----CC
Confidence 6999999999999999999987 78999999999999888876542 3999999994 58
Q ss_pred EEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE
Q psy9598 578 YLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL 657 (1915)
Q Consensus 578 ~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~ 657 (1915)
+|++|+.||+|++||+.++..+. .+.+|...|.+++|+|++.+|++|+.|++|++||+.. .....
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~------------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~---~~~~~ 201 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVM------------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSL 201 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEE------------EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC---CeeEE
Confidence 99999999999999998764322 2346778999999999999999999999999999943 33333
Q ss_pred EeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE
Q psy9598 658 EVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 736 (1915)
Q Consensus 658 ~l~~h~~~V~sl~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L 736 (1915)
.+ .+...|.+++|+| ++.+|++|+.||.|++||+.++........ ......+|...|.+++|+|+|.+|
T Consensus 202 ~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~---------~~~~~~~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 202 TL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS---------ENESGTGHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp EE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------------CCCSSCEEEEEECTTSSEE
T ss_pred EE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc---------cccCCCCCCCCEEEEEECCCCCEE
Confidence 33 3667899999999 899999999999999999998875432210 011124578899999999999999
Q ss_pred EEEEecCCeEEEEECCC------------CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccccee
Q psy9598 737 ITAINFNFQIKIWDAFN------------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKW 804 (1915)
Q Consensus 737 ~t~s~~Dg~I~vwD~~t------------g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~ 804 (1915)
++++. |+.|++||+.+ +.+...+.+|...|.+++|+| ++.+|++|+.||.|+|||+.++.. +..
T Consensus 272 ~s~s~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~--~~~ 347 (393)
T 1erj_A 272 VSGSL-DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNP--LLM 347 (393)
T ss_dssp EEEET-TSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCE--EEE
T ss_pred EEEeC-CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeE--EEE
Confidence 99998 99999999875 346678889999999999999 999999999999999999999887 555
Q ss_pred eeeeecCCCCcceEEEEEcC------CCCEEEEEeCCCeEEEEeCCCC
Q psy9598 805 FHNIVEGQGEGALFDGKWSP------DGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 805 ~~~~~~~~~~~~V~~vafSp------dg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+. .|.+.|.+++|++ ++.+||+|+.||.|+||++...
T Consensus 348 l~-----~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 348 LQ-----GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EE-----CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EC-----CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 54 5678999999986 6899999999999999998643
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-32 Score=343.72 Aligned_cols=309 Identities=14% Similarity=0.146 Sum_probs=246.8
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCC-CEEEEEECCCcEEEEECCCCcEEEEEe--CCCCCEEEEEEeC-CCCEEEEEeCCC
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLG-EVIVTGADDLLIKLWRARDGKLLATLR--GCSGEISDIAIDN-RNILLAAGTVDK 540 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg-~~LaTGs~Dg~I~IWd~~tg~~~~~l~--gH~~~I~~Lafsp-dg~~LaSgs~Dg 540 (1915)
.+.+...+.+|.+.|+|++|+|+| .+||+|+.||.|+|||+.++.....+. +|.+.|++++|+| ++.+|++|+.|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 456677889999999999999999 999999999999999999988877775 7999999999999 789999999999
Q ss_pred cEEEEECCCCceEEEeecC---CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 541 TIRIWNLQTLAPISVLVGH---QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h---~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
.|+|||+.+ ..+..+..| ...|.+++|+|+ +.+|++|+.||.|++||+. +..+. .+..|
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~i~d~~-~~~~~------------~~~~h 203 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVS----RQMLATGDSTGRLLLLGLD-GHEIF------------KEKLH 203 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETT----TTEEEEEETTSEEEEEETT-SCEEE------------EEECS
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCC----CCEEEEECCCCCEEEEECC-CCEEE------------EeccC
Confidence 999999985 556666544 488999999994 4899999999999999984 32211 22356
Q ss_pred CCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEccCC
Q psy9598 618 NAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 618 ~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~DG~I~IWDl~~~ 695 (1915)
...|.+++|+|++. +|++|+.||.|++||+.............+|...|.+++|+| ++.+|++++.||.|+|||+.++
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence 78999999999999 999999999999999965333222333337999999999999 9999999999999999999987
Q ss_pred ceEEeeecccccCCC-CccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC--CCCCeEEEEE
Q psy9598 696 QWRFIRLDMNTCLPH-TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG--HTNEVFVLES 772 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g--H~~~V~sl~~ 772 (1915)
............... .............+..++|+|++.+ +++. ||.|+|||+.+++++..+.+ |...+.+++|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~-d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~ 360 (383)
T 3ei3_B 284 SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND-KRTIDIYDANSGGLVHQLRDPNAAGIISLNKF 360 (383)
T ss_dssp TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC-CCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred ccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC-CCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence 643322211110000 0000111112345666778888877 5555 99999999999999999987 5677888899
Q ss_pred ccCCCCEEEEEecCceEEEEECCC
Q psy9598 773 HPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 773 sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
+| ++.+|++|+ ||.|+|||+.+
T Consensus 361 s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 361 SP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CT-TSSEEEEEE-TTEEEEEECC-
T ss_pred ec-CccEEEEec-CCcEEEEecCC
Confidence 99 999999997 99999999864
No 57
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.1e-33 Score=345.77 Aligned_cols=341 Identities=15% Similarity=0.193 Sum_probs=245.1
Q ss_pred eeEEecCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCcEEEEEe-------------CCCCCEEEEEEeC-CCCE
Q psy9598 468 QHYVNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDGKLLATLR-------------GCSGEISDIAIDN-RNIL 532 (1915)
Q Consensus 468 ~~~~l~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~-------------gH~~~I~~Lafsp-dg~~ 532 (1915)
....+.+|.+.|+||+|+| ++.+||+|+.||.|+|||+.++.....+. +|...|++++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3457789999999999999 99999999999999999999876544432 6999999999999 7889
Q ss_pred EEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccc
Q psy9598 533 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 533 LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~ 612 (1915)
|++|+.||.|++||+.++..+..+. +...+.++.|++.. .++.+|++|+.||.|++||+.++..+..
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~d~~~~~~~~~----------- 181 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVS-TKHCLVAVGTRGPKVQLCDLKSGSCSHI----------- 181 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSC-SSCCEEEEEESSSSEEEEESSSSCCCEE-----------
T ss_pred EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCC-CCCcEEEEEcCCCeEEEEeCCCcceeee-----------
Confidence 9999999999999999999888876 78889999999965 3556999999999999999987754332
Q ss_pred ccCCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCcee-------------EEeccCCCCeeEEEEcCCCCEE
Q psy9598 613 RIRPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGI-------------LEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i-------------~~l~~h~~~V~sl~fspdg~~L 678 (1915)
+..|...|.+++|+|++. +|++|+.||.|++||+......... ....+|...|.+++|+|++.+|
T Consensus 182 -~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 182 -LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260 (408)
T ss_dssp -ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred -ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence 235678899999999998 5899999999999999643321111 1125789999999999999999
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
++|+.||.|++||+.++.......... .......+........+..+++++. ++.|++||+.+++++.
T Consensus 261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 261 LTVGTDNRMRLWNSSNGENTLVNYGKV-----------CNNSKKGLKFTVSCGCSSEFVFVPY-GSTIAVYTVYSGEQIT 328 (408)
T ss_dssp EEEETTSCEEEEETTTCCBCCCCCCCC-----------CCCCSSCCCCEECCSSSSCEEEEEE-TTEEEEEETTTCCEEE
T ss_pred EEecCCCeEEEEECCCCccceeccccc-----------cccccccceeEEecCCCceEEEEec-CCEEEEEECcCCccee
Confidence 999999999999999876432111000 0001111122222334455666666 9999999999999999
Q ss_pred EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC-CCCEEEEEeCCCe
Q psy9598 759 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGH 837 (1915)
Q Consensus 759 ~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp-dg~~Lasg~~dG~ 837 (1915)
.+.+|.+.|++++|+| ++.+|++|+.||.|+||++.+++. +..... ......+.+ ....+++++.+|.
T Consensus 329 ~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 397 (408)
T 4a11_B 329 MLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEP--VPDDDE--------TTTKSQLNPAFEDAWSSSDEEGG 397 (408)
T ss_dssp EECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred eeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCc--cCCCCc--------eEeccccccccceeecccCccCc
Confidence 9999999999999999 999999999999999999998877 433221 111122333 3445566778899
Q ss_pred EEEEeCCC
Q psy9598 838 LLVYGLGG 845 (1915)
Q Consensus 838 I~Iwdl~s 845 (1915)
+.+|+...
T Consensus 398 ~~~W~~~~ 405 (408)
T 4a11_B 398 TSAWSHPQ 405 (408)
T ss_dssp --------
T ss_pred eeecCCcc
Confidence 99998653
No 58
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.3e-33 Score=343.89 Aligned_cols=298 Identities=15% Similarity=0.182 Sum_probs=252.4
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
+..|.++|+|++|+|+|.+||+|+.||.|+|||+.++. .+..+.+|...|++|+|+|++.+|++|+.||.|+|||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 44699999999999999999999999999999999987 8899999999999999999999999999999999999998
Q ss_pred CceEEE--eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 550 LAPISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 550 g~~~~~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
+..... +..|...|.+++|+|+ +.+|++|+.||.|++||+..+...... .....+|...|.+++|+
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~v~i~d~~~~~~~~~~--------~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPN----EKKFAVGSGSRVISICYFEQENDWWVC--------KHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTT----SSEEEEEETTSSEEEEEEETTTTEEEE--------EEECTTCCSCEEEEEEC
T ss_pred CeeeeeEEeecCCCceeEEEECCC----CCEEEEEeCCCEEEEEEecCCCcceee--------eeeecccCCCeeEEEEc
Confidence 875544 4679999999999994 489999999999999999876531111 11123567889999999
Q ss_pred CCCcEEEEEeCCCeEEEEEecC---------------CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy9598 628 PGGLFLATGSGDHHVRVYKMDG---------------VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 692 (1915)
Q Consensus 628 pdg~~Lasgs~Dg~I~IwDl~~---------------~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl 692 (1915)
|++.+|++|+.||.|++||+.. ......+..+.+|...|.+++|+|++.+|++++.||.|++||+
T Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999999999999999999732 1234567778899999999999999999999999999999999
Q ss_pred cCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC--Cce--------------
Q psy9598 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN--GDL-------------- 756 (1915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t--g~~-------------- 756 (1915)
.+++..... ..+...|.+++|+|++.+|+++ . |+.|++|++.+ +..
T Consensus 232 ~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
T 1k8k_C 232 DKKMAVATL----------------ASETLPLLAVTFITESSLVAAG-H-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 293 (372)
T ss_dssp GGTTEEEEE----------------ECSSCCEEEEEEEETTEEEEEE-T-TSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred CCCceeEEE----------------ccCCCCeEEEEEecCCCEEEEE-e-CCeEEEEEccCcCceEEEeeccCccccchh
Confidence 988754322 2356689999999999988777 5 99999999987 421
Q ss_pred ------------------E------EEe-eCCCCCeEEEEEccCCC---CEEEEEecCceEEEEECCCCcc
Q psy9598 757 ------------------V------QVL-KGHTNEVFVLESHPFDS---RVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 757 ------------------i------~~l-~gH~~~V~sl~~sp~dg---~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
. ..+ .+|...|++++|++.++ .+|+||+.||.|+||++.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 294 RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp ---CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred hhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 0 233 49999999999886577 9999999999999999977554
No 59
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=344.53 Aligned_cols=310 Identities=15% Similarity=0.150 Sum_probs=264.5
Q ss_pred ccccccCCCeEEEecc----cCCce----eeeEEecC----------CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy9598 446 REYSGPLSRSLMISSH----KYSNL----RQHYVNLG----------HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD 507 (1915)
Q Consensus 446 r~~tg~~d~~~~i~~~----~~~~~----~~~~~l~g----------H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t 507 (1915)
..++|+.++.+.+|.. ..... .....+.. |.+.|+|++|+|+|.+|++|+.||.|+||+ .+
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~ 138 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KT 138 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TT
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CC
Confidence 3567888999999977 43331 02223333 788999999999999999999999999999 78
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCC---------------eEEEEeccCc
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI---------------ITGVNFCPLE 572 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~---------------V~sl~fsp~~ 572 (1915)
+..+..+.+|...|.+++|+|++.+|++++.|+.|++||+.++..+..+..|... |.+++|++.
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD- 217 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET-
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-
Confidence 8999999999999999999999999999999999999999999999999888877 999999984
Q ss_pred cCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC
Q psy9598 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 652 (1915)
Q Consensus 573 ~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~ 652 (1915)
..+++++.+|.|++||+.++..+.. +..|...|.+++|+|++.+|++|+.||.|++||+..
T Consensus 218 ----~~~~~~~~~g~i~~~d~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--- 278 (425)
T 1r5m_A 218 ----DKFVIPGPKGAIFVYQITEKTPTGK------------LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN--- 278 (425)
T ss_dssp ----TEEEEECGGGCEEEEETTCSSCSEE------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS---
T ss_pred ----CEEEEEcCCCeEEEEEcCCCceeee------------eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC---
Confidence 4699999999999999988754322 224668899999999999999999999999999843
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC
Q psy9598 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 732 (1915)
Q Consensus 653 ~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd 732 (1915)
...+..+.+|...|.+++|+|++ +|++++.||.|++||+.++...... ..+...|.+++|+|+
T Consensus 279 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~----------------~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 279 GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS----------------IVDGVPIFAGRISQD 341 (425)
T ss_dssp BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE----------------ECTTCCEEEEEECTT
T ss_pred CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec----------------ccCCccEEEEEEcCC
Confidence 34566678899999999999999 9999999999999999887754322 235678999999999
Q ss_pred CCEEEEEEecCCeEEEEECCCCc--------------------eEEEeeCCCC--CeEEEEEccCCCCEEEEEecCceEE
Q psy9598 733 DRWVITAINFNFQIKIWDAFNGD--------------------LVQVLKGHTN--EVFVLESHPFDSRVLLSAGHDGLII 790 (1915)
Q Consensus 733 g~~L~t~s~~Dg~I~vwD~~tg~--------------------~i~~l~gH~~--~V~sl~~sp~dg~~LaSgs~DG~I~ 790 (1915)
+.+|++++. ||.|++||+.++. ++..+.+|.. .|++++|+| ++.+|++|+.||.|+
T Consensus 342 ~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 342 GQKYAVAFM-DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGS 419 (425)
T ss_dssp SSEEEEEET-TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCE
T ss_pred CCEEEEEEC-CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEE
Confidence 999999998 9999999999888 8999999976 999999999 999999999999999
Q ss_pred EEECC
Q psy9598 791 IWDIL 795 (1915)
Q Consensus 791 IWdl~ 795 (1915)
||++.
T Consensus 420 iw~~~ 424 (425)
T 1r5m_A 420 VVAIP 424 (425)
T ss_dssp EEECC
T ss_pred EEeec
Confidence 99985
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-32 Score=327.44 Aligned_cols=290 Identities=19% Similarity=0.233 Sum_probs=253.2
Q ss_pred CCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcE
Q psy9598 463 YSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTI 542 (1915)
Q Consensus 463 ~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtI 542 (1915)
+..+++...|.+|.+.|+||+| +++.+|++|+.||.|+|||+.++.....+.+|...|.+++|+|++.+|++|+.||.|
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 4456778899999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCC---ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 543 RIWNLQTL---APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 543 rVWDl~tg---~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
++|++... ..+..+.+|...|.++.|.. .+|++++.||.|++|| .+... ..+..|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~l~~~~~d~~i~~~d--~~~~~------------~~~~~~~~ 143 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQD------GVVISGSWDKTAKVWK--EGSLV------------YNLQAHNA 143 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEEET------TEEEEEETTSEEEEEE--TTEEE------------EEEECCSS
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEecC------CEEEEEeCCCCEEEEc--CCcEE------------EecccCCC
Confidence 99998654 66788899999999999953 7999999999999999 22211 12235678
Q ss_pred ceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCce
Q psy9598 620 HILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 697 (1915)
Q Consensus 620 ~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~ 697 (1915)
.+.+++|++ ++.+|++|+.||.|++||. ...+..+.. |...|.+++|++++. |++|+.||.|++||+.+++.
T Consensus 144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~-----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTASADKTIKLWQN-----DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEEEEET-----TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred ceeEEEEccCCCCEEEEEECCCCEEEEec-----CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence 899999998 8999999999999999994 234555666 999999999999998 99999999999999998775
Q ss_pred EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCC
Q psy9598 698 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDS 777 (1915)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg 777 (1915)
.... ..|...|.+++|+|++ .|++++. ||.|++||+.+++++..+..|...|++++|+| ++
T Consensus 218 ~~~~----------------~~~~~~i~~~~~~~~~-~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~ 278 (313)
T 3odt_A 218 LRTY----------------EGHESFVYCIKLLPNG-DIVSCGE-DRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NG 278 (313)
T ss_dssp EEEE----------------ECCSSCEEEEEECTTS-CEEEEET-TSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TS
T ss_pred hhhh----------------hcCCceEEEEEEecCC-CEEEEec-CCEEEEEECCCCceeEEEeccCceEEEEEEcc-CC
Confidence 4322 2467789999999999 5777777 99999999999999999999999999999999 77
Q ss_pred CEEEEEecCceEEEEECCCCcc
Q psy9598 778 RVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 778 ~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
. +++|+.||.|+||++.++..
T Consensus 279 ~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 279 D-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp C-EEEEETTSCEEEEESCGGGC
T ss_pred C-EEEEeCCCcEEEEeCCCCce
Confidence 7 66799999999999998776
No 61
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.6e-33 Score=358.76 Aligned_cols=312 Identities=13% Similarity=0.122 Sum_probs=234.8
Q ss_pred eEEecCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEE
Q psy9598 469 HYVNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRI 544 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrV 544 (1915)
...+.+|...|+||+|+| ++.+||+|+.||+|+|||+.++. .+..+.+|.+.|++|+|+| ++.+|+||+.||+|+|
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 345668999999999999 56799999999999999998775 4455679999999999998 6889999999999999
Q ss_pred EECCCCceEEEeecC--CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 545 WNLQTLAPISVLVGH--QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 545 WDl~tg~~~~~l~~h--~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
||+.++........| ...+.+++|+|+ +.+|++|+.||+|++||+.+.. + ..+..|...|.
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~g~~dg~i~~wd~~~~~-~------------~~~~~h~~~v~ 254 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSAS----SRMVVTGDNVGNVILLNMDGKE-L------------WNLRMHKKKVT 254 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETT----TTEEEEECSSSBEEEEESSSCB-C------------CCSBCCSSCEE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCC----CCEEEEEeCCCcEeeeccCcce-e------------EEEecccceEE
Confidence 999876544444333 346789999984 5899999999999999986432 1 12346778999
Q ss_pred EEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 623 CSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 623 ~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
+++|+|++. +|++|+.||.|+|||+........+....+|...|.+|+|+|+|.+|++|+.||+|+|||+.++......
T Consensus 255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred eeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence 999999876 7889999999999999765544455556789999999999999999999999999999999987755433
Q ss_pred ecccccCCCC-ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-CCCCCeEEE-EEccCCCC
Q psy9598 702 LDMNTCLPHT-KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-GHTNEVFVL-ESHPFDSR 778 (1915)
Q Consensus 702 ~~~~~~~~~~-~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-gH~~~V~sl-~~sp~dg~ 778 (1915)
.......... ............+..+++++++..+++++..++.|++||+.+++++..+. +|...|.++ +|+| ++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~ 413 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGD 413 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSS
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCC
Confidence 2111100000 00000011122233344444444444444435689999999999998875 788888887 6999 999
Q ss_pred EEEEEecCceEEEEECCCCcc
Q psy9598 779 VLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 779 ~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+|++|+ |++|+||++.+++.
T Consensus 414 ~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 414 TLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CEEEEC-SSEEEECCCC----
T ss_pred EEEEEc-CCcEEEEECCcCee
Confidence 998876 88999999998765
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=330.83 Aligned_cols=298 Identities=14% Similarity=0.173 Sum_probs=258.5
Q ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 509 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 509 ~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
.....+.+|.+.|++|+|+|++.+|++|+.||.|+|||+.++..+..+.+|.+.|++++|+|+ +.+|++++.||+|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~dg~i 98 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF----TKYCVTGSADYSI 98 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT----SSEEEEEETTTEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC----CCEEEEEeCCCeE
Confidence 345678999999999999999999999999999999999999999999999999999999994 4899999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC-----CeEEEEEecCCCCC--------ce
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD-----HHVRVYKMDGVDSP--------LG 655 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~--------~~ 655 (1915)
++||+.++..+.... +...|.+++|+|++.+|++++.+ |.|.+||+...... ..
T Consensus 99 ~iwd~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 99 KLWDVSNGQCVATWK-------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp EEEETTTCCEEEEEE-------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred EEEECCCCcEEEEee-------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 999999876544332 34789999999999999999999 99999999654321 13
Q ss_pred eEEeccCCC--CeeEEEEcCCCCEEEEEeCCCcEEEEEccC-CceEEeeecccccCCCCccccccccccccEEEEEECCC
Q psy9598 656 ILEVEEHSD--KVDSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 732 (1915)
Q Consensus 656 i~~l~~h~~--~V~sl~fspdg~~L~sgs~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd 732 (1915)
+..+..|.+ .|.+++|+|++.+|++|+.||.|++||+.+ ...... ...+...|.+++|+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------~~~~~~~v~~~~~~~~ 229 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS----------------IDLHEKSISDMQFSPD 229 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE----------------EECCSSCEEEEEECTT
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE----------------EecCCCceeEEEECCC
Confidence 334556666 999999999999999999999999999987 332221 2236678999999999
Q ss_pred CCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCc--------------eEEEEECCCCc
Q psy9598 733 DRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG--------------LIIIWDILSSK 798 (1915)
Q Consensus 733 g~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG--------------~I~IWdl~s~~ 798 (1915)
+.+|++++. ||.|++||+.++.++..+. +...+.+++|+| ++.+|++++.++ .|++||+.++.
T Consensus 230 ~~~l~~~~~-d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 230 LTYFITSSR-DTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp SSEEEEEET-TSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred CCEEEEecC-CceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 999999988 9999999999999999988 778899999999 999999999988 89999999988
Q ss_pred cccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc
Q psy9598 799 QRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRP 849 (1915)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~ 849 (1915)
. +..+. .|.+.|.+++|+|+|.+|++++.||.|+||++..+...
T Consensus 307 ~--~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 307 E--IGRVQ-----GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp E--EEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred c--hhhee-----cccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence 7 55554 46789999999999999999999999999999876543
No 63
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.8e-32 Score=328.42 Aligned_cols=284 Identities=14% Similarity=0.210 Sum_probs=245.5
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcE---EEEEe--CCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL---LATLR--GCSGEISDIAIDNRNILLAAGTVDKTIRI 544 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~---~~~l~--gH~~~I~~Lafspdg~~LaSgs~DgtIrV 544 (1915)
..+.+|...|++++|+|++++|++|+ ||.|+||++.++.. +..+. +|...|.+++|+|++.+|++|+.|+.|++
T Consensus 45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 34458999999999999999999999 99999999987752 33333 89999999999999999999999999999
Q ss_pred EECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 545 WNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 545 WDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
||+.++. ....+.+|...|.+++|+|. +.+|++++.||.|++||+.++..+.. +..|...|.
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~v~~~d~~~~~~~~~------------~~~~~~~i~ 187 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPD----SKVCFSCCSDGNIAVWDLHNQTLVRQ------------FQGHTDGAS 187 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCEE
T ss_pred EECCCCCcceeeecccCCCceEEEEECCC----CCEEEEEeCCCcEEEEeCCCCceeee------------eecccCceE
Confidence 9999887 66778899999999999994 48999999999999999987653322 234668899
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 623 CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 623 ~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
+++|+|++.+|++++.||.|++||+.. ...+.. ..|...|.+++|+|++.+|++++.||.|++||+.+.....
T Consensus 188 ~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~--- 260 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGLDNTVRSWDLRE---GRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ--- 260 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTT---TEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---
T ss_pred EEEECCCCCEEEEEecCCcEEEEECCC---CceEee-ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---
Confidence 999999999999999999999999943 233333 3578899999999999999999999999999998776322
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEE
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaS 782 (1915)
...+...|.+++|+|++.+|++++. ||.|++||+.+++.+..+ .|...|++++|+| ++.+|++
T Consensus 261 --------------~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~ 323 (337)
T 1gxr_A 261 --------------LHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVT 323 (337)
T ss_dssp --------------ECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEE
T ss_pred --------------EcCCccceeEEEECCCCCEEEEecC-CCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEE
Confidence 2246678999999999999999998 999999999999888554 5888999999999 9999999
Q ss_pred EecCceEEEEEC
Q psy9598 783 AGHDGLIIIWDI 794 (1915)
Q Consensus 783 gs~DG~I~IWdl 794 (1915)
++.||.|++|++
T Consensus 324 ~~~dg~i~iw~~ 335 (337)
T 1gxr_A 324 GSGDKKATVYEV 335 (337)
T ss_dssp EETTSCEEEEEE
T ss_pred ecCCCeEEEEEE
Confidence 999999999997
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.3e-32 Score=337.80 Aligned_cols=300 Identities=17% Similarity=0.243 Sum_probs=247.0
Q ss_pred EEECCCCcEEEEEeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceEEEee--cCCCCeEEEEeccCccCCCcE
Q psy9598 502 LWRARDGKLLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQTLAPISVLV--GHQGIITGVNFCPLEVNGFNY 578 (1915)
Q Consensus 502 IWd~~tg~~~~~l~gH~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~tg~~~~~l~--~h~~~V~sl~fsp~~~~d~~~ 578 (1915)
+|++.+..+...+.+|...|++|+|+|++ .+||+|+.||.|+|||+.++.....+. +|.+.|++++|+|. ++.+
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF---NTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT---EEEE
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC---CCCE
Confidence 44556677888899999999999999999 999999999999999999988887775 69999999999993 3489
Q ss_pred EEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEE
Q psy9598 579 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 579 L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~ 658 (1915)
|++++.||+|++||+.+.. +..+. ....+...|.+++|+|++.+|++|+.||.|++||+. ...+..
T Consensus 134 l~s~~~d~~i~iwd~~~~~-~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~ 199 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGSV-IQVFA---------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD----GHEIFK 199 (383)
T ss_dssp EEEEETTTEEEEEETTSCE-EEEEE---------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT----SCEEEE
T ss_pred EEEEeCCCEEEEEECCCCc-eEEEe---------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC----CCEEEE
Confidence 9999999999999998532 11111 112345789999999999999999999999999983 346778
Q ss_pred eccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCc----eEEeeecccccCCCCccccccccccccEEEEEECC-C
Q psy9598 659 VEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQ----WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA-S 732 (1915)
Q Consensus 659 l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp-d 732 (1915)
+.+|...|.+++|+|++. +|++|+.||.|++||+.+.. +.. ...+...|.+++|+| +
T Consensus 200 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------------~~~~~~~v~~~~~s~~~ 262 (383)
T 3ei3_B 200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA-----------------EMPHEKPVNAAYFNPTD 262 (383)
T ss_dssp EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE-----------------EEECSSCEEEEEECTTT
T ss_pred eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE-----------------EecCCCceEEEEEcCCC
Confidence 889999999999999999 99999999999999998733 211 113678899999999 9
Q ss_pred CCEEEEEEecCCeEEEEECCCCceEEEeeCCC-----------------CCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 733 DRWVITAINFNFQIKIWDAFNGDLVQVLKGHT-----------------NEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 733 g~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~-----------------~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
+.+|++++. |+.|++||+.++..+..+.+|. +.+..++|+| ++.+ +|+.||.|+|||+.
T Consensus 263 ~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 263 STKLLTTDQ-RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDAN 338 (383)
T ss_dssp SCEEEEEES-SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETT
T ss_pred CCEEEEEcC-CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecC
Confidence 999999998 9999999999998877777653 2344466666 5555 77899999999999
Q ss_pred CCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 796 SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 796 s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
+++. +..+. ...+.+.+..++|+|+|.+||+|+ ||.|+||++.+
T Consensus 339 ~~~~--~~~l~---~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 SGGL--VHQLR---DPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCE--EEEEC---BTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCce--eeeec---CCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 9887 55543 112346677789999999999997 89999999875
No 65
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-31 Score=339.62 Aligned_cols=285 Identities=21% Similarity=0.324 Sum_probs=244.3
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe--CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR--GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~--gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
-+++|+||++ ++||+|. |++|+|||+.+|+++..+. +|...|++|+|+|+|.+||+|+.||+|+|||+.+++++..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3567999975 5788776 8999999999999887665 6778899999999999999999999999999999999999
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 635 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 635 (1915)
+.+|...|.++.|++ .+|++|+.|+.+++||....... ...+..|...+.++.|+++|.+|++
T Consensus 185 ~~~h~~~v~~~s~~~------~~l~sgs~d~~i~~~d~~~~~~~-----------~~~~~~h~~~~~~~~~~~~g~~l~s 247 (420)
T 4gga_A 185 MTSHSARVGSLSWNS------YILSSGSRSGHIHHHDVRVAEHH-----------VATLSGHSQEVCGLRWAPDGRHLAS 247 (420)
T ss_dssp ECCCSSCEEEEEEET------TEEEEEETTSEEEEEETTSSSCE-----------EEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EeCCCCceEEEeeCC------CEEEEEeCCCceeEeeeccccee-----------eEEecccccceeeeeecCCCCeeee
Confidence 999999999999875 79999999999999998765321 1223467788999999999999999
Q ss_pred EeCCCeEEEEEecCCC-CCceeEEeccCCCCeeEEEEcCCCC-EEEE--EeCCCcEEEEEccCCceEEeeecccccCCCC
Q psy9598 636 GSGDHHVRVYKMDGVD-SPLGILEVEEHSDKVDSIQWSHSHL-RFVS--GSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 711 (1915)
Q Consensus 636 gs~Dg~I~IwDl~~~~-~~~~i~~l~~h~~~V~sl~fspdg~-~L~s--gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~ 711 (1915)
++.||.|+||++.... ....+.....|...|.+++|+|.+. .|++ |+.||+|+|||+.++.+....
T Consensus 248 ~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~---------- 317 (420)
T 4gga_A 248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---------- 317 (420)
T ss_dssp EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE----------
T ss_pred eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee----------
Confidence 9999999999986433 2334566788999999999999765 4444 457999999999988755432
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEe-cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEE
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAIN-FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLII 790 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~-~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~ 790 (1915)
.....+.++.|++++..++++++ .|+.|+|||+.+++++..+.+|.+.|++|+|+| ++.+|||||.||+|+
T Consensus 318 -------~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvr 389 (420)
T 4gga_A 318 -------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLR 389 (420)
T ss_dssp -------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEE
T ss_pred -------ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEE
Confidence 13456889999999999988763 489999999999999999999999999999999 999999999999999
Q ss_pred EEECCCCcc
Q psy9598 791 IWDILSSKQ 799 (1915)
Q Consensus 791 IWdl~s~~~ 799 (1915)
|||+....+
T Consensus 390 iWdv~~~~~ 398 (420)
T 4gga_A 390 LWRCFELDP 398 (420)
T ss_dssp EECCSCSSC
T ss_pred EEECCCCCc
Confidence 999987655
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=332.94 Aligned_cols=305 Identities=16% Similarity=0.194 Sum_probs=243.8
Q ss_pred eEEecCCCCcEEEEEEcCCCCEE-EEEEC---CCcEEEEECCCCcEEEEE-eCCCCCEEEEEEeCC---CCEEEEEeCCC
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVI-VTGAD---DLLIKLWRARDGKLLATL-RGCSGEISDIAIDNR---NILLAAGTVDK 540 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~L-aTGs~---Dg~I~IWd~~tg~~~~~l-~gH~~~I~~Lafspd---g~~LaSgs~Dg 540 (1915)
...+.+|.+.|++|+|+|++..| ++|+. ||.|+||++.++...... .+|...|++++|+|+ +.+|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34567899999999999999655 56665 899999999999876543 379999999999998 69999999999
Q ss_pred cEEEEECCCCc-eEEEeecCCCCeEEEEeccC--ccCCCcEEEEEeCCCeEEEEecccCc-cccceeccCccccccccCC
Q psy9598 541 TIRIWNLQTLA-PISVLVGHQGIITGVNFCPL--EVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 541 tIrVWDl~tg~-~~~~l~~h~~~V~sl~fsp~--~~~d~~~L~sgs~DgtI~iWDl~~~~-~~~~~~~~~~~~~~~~~~~ 616 (1915)
.|++||+.++. ++..+.+|...|.++.|.+. -..++.+|++|+.||.|++||+.++. .+..+..+ ...
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--------~~~ 162 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV--------QGE 162 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC--------TTS
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc--------CCC
Confidence 99999999988 89999999999999976541 11256899999999999999998875 22222111 011
Q ss_pred CCCceEEEE----ECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC---CCCEEEEEeCCCcEEE
Q psy9598 617 GNAHILCSS----FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH---SHLRFVSGSRDGTALI 689 (1915)
Q Consensus 617 ~~~~V~~l~----fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp---dg~~L~sgs~DG~I~I 689 (1915)
+...+.+++ |++++.+|++|+.||.|++||+... . ......|...|.+++|+| ++.+|++|+.||.|++
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM---A-LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT---E-EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC---c-eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 134788888 7899999999999999999999432 2 234567899999999999 8999999999999999
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCCC--------------
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFNG-------------- 754 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I~vwD~~tg-------------- 754 (1915)
||+.++...... .......|...|++++|+|++. +|++++. ||.|++||+.++
T Consensus 239 ~d~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 239 FDMRTQHPTKGF-----------ASVSEKAHKSTVWQVRHLPQNRELFLTAGG-AGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp EEEEEEETTTEE-----------EEEEEECCSSCEEEEEEETTEEEEEEEEET-TSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred EeCcCCCcccce-----------eeeccCCCcCCEEEEEECCCCCcEEEEEeC-CCcEEEeecCCCcccccccCCCCccc
Confidence 999865421100 0001225778999999999999 6777777 999999998754
Q ss_pred -----ceEEEeeCCCCCeEEEEEccCCCCEEE-EEecCceEEEEECCCCc
Q psy9598 755 -----DLVQVLKGHTNEVFVLESHPFDSRVLL-SAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 755 -----~~i~~l~gH~~~V~sl~~sp~dg~~La-Sgs~DG~I~IWdl~s~~ 798 (1915)
.++..+.+|...|++++|+| ++.+|+ +|+.||.|+|||+.+..
T Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 307 VAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred cccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 46788899999999999999 777777 89999999999997654
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-32 Score=338.67 Aligned_cols=308 Identities=17% Similarity=0.229 Sum_probs=247.5
Q ss_pred EEecCCCCcEEEEEEcCC----CCEEEEEECCCcEEEEECCCCcEEEEEeC-----CCCCEEEEEEeCC----CCEEEEE
Q psy9598 470 YVNLGHLSAVFCVLFDKL----GEVIVTGADDLLIKLWRARDGKLLATLRG-----CSGEISDIAIDNR----NILLAAG 536 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspd----g~~LaTGs~Dg~I~IWd~~tg~~~~~l~g-----H~~~I~~Lafspd----g~~LaSg 536 (1915)
..+.||.+.|+||+|+|+ ..++++++.++.|+||++.++..+..+.. |...|++++|+++ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345699999999999984 55677777777999999998887776654 5678999999999 6799999
Q ss_pred eCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 537 TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 537 s~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
+.||.|+|||+.++..+..+.+|...|++++|+|. ++.+|++|+.||+|++||+.++..+..+. .+..
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~ 159 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR---DPNLLLSVSKDHALRLWNIQTDTLVAIFG---------GVEG 159 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS---CTTEEEEEETTSCEEEEETTTTEEEEEEC---------STTS
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC---CCCEEEEEeCCCeEEEEEeecCeEEEEec---------cccc
Confidence 99999999999999999999999999999999982 34899999999999999998775432221 1235
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCC-------------------------ceeEEeccCCCCeeEEEE
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP-------------------------LGILEVEEHSDKVDSIQW 671 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~-------------------------~~i~~l~~h~~~V~sl~f 671 (1915)
|...|.+++|+|++.+|++|+.||.|++||+...... .......+|...|.+++|
T Consensus 160 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 6789999999999999999999999999998532100 012233459999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC--CCEEEEEEecCCeEEEE
Q psy9598 672 SHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS--DRWVITAINFNFQIKIW 749 (1915)
Q Consensus 672 spdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd--g~~L~t~s~~Dg~I~vw 749 (1915)
+ +.+|++++.||.|++||+.+......... ..............+...|++++|+|+ +.+|++++. ||.|++|
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~-dg~i~vw 314 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIK--PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ-VGKLYVW 314 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCC--TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT-TSCEEEE
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccc--cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec-CCcEEEE
Confidence 8 77999999999999999987653111000 000000112233456677889999999 999999988 9999999
Q ss_pred ECCCCc----eEEEeeCC--CCCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 750 DAFNGD----LVQVLKGH--TNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 750 D~~tg~----~i~~l~gH--~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
|+.+++ .+..+.+| ...|++++|+| ++.+|++|+.||.|+|||+.
T Consensus 315 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 315 DLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECCSSSGGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred ECCCCCCccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence 999876 44578888 78999999999 99999999999999999985
No 68
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=363.76 Aligned_cols=310 Identities=11% Similarity=0.062 Sum_probs=228.6
Q ss_pred CEEEEEECCCcEEEEECCCCcE----EEEEeCCCCCEEEEEEeCC------CCEEEEEeCCCcEEEEECCCCce------
Q psy9598 489 EVIVTGADDLLIKLWRARDGKL----LATLRGCSGEISDIAIDNR------NILLAAGTVDKTIRIWNLQTLAP------ 552 (1915)
Q Consensus 489 ~~LaTGs~Dg~I~IWd~~tg~~----~~~l~gH~~~I~~Lafspd------g~~LaSgs~DgtIrVWDl~tg~~------ 552 (1915)
.+|++|+.|++|+||++.++++ ..++.+|.+.|.+|+|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 3444466889999999988764 3457788999999999996 57999999999999999987642
Q ss_pred -----EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE--E
Q psy9598 553 -----ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS--S 625 (1915)
Q Consensus 553 -----~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l--~ 625 (1915)
...+.+|...|++++|++. ..|++|+.||+|++||+.++.... ..+..|...|.++ +
T Consensus 254 ~~~~p~~~l~~h~~~v~sv~~s~~-----~~lasgs~DgtV~lWD~~~~~~~~-----------~~~~~H~~~V~sv~~~ 317 (524)
T 2j04_B 254 MCEKPSLTLSLADSLITTFDFLSP-----TTVVCGFKNGFVAEFDLTDPEVPS-----------FYDQVHDSYILSVSTA 317 (524)
T ss_dssp CCCSCSEEECCTTTCEEEEEESSS-----SEEEEEETTSEEEEEETTBCSSCS-----------EEEECSSSCEEEEEEE
T ss_pred eecCceEEEEcCCCCEEEEEecCC-----CeEEEEeCCCEEEEEECCCCCCce-----------EEeecccccEEEEEEE
Confidence 3478899999999999972 489999999999999998753211 1133577899999 5
Q ss_pred ECCCC-cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC--CeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 626 FSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD--KVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 626 fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~--~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
|+++| .+||+|+.||+|+|||++. ...+..+.+|.. .|.+|+|+|++..|++++.|++|+|||++++.+...
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~---~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~-- 392 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKD---IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP-- 392 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGG---HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE--
T ss_pred cCCCCCeEEEEeccCCeEEEEECCC---CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee--
Confidence 78888 8999999999999999953 233334556653 588999999999999999999999999988763221
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC-----CCCCeEEEEEccCCC
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-----HTNEVFVLESHPFDS 777 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g-----H~~~V~sl~~sp~dg 777 (1915)
..+|...|++|+|+|+|.+|++|+. ||+|++||+..+ ++..+.. +...|++++|+| ++
T Consensus 393 --------------l~gH~~~V~sva~Sp~g~~l~Sgs~-Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g 455 (524)
T 2j04_B 393 --------------LVSRETTITAIGVSRLHPMVLAGSA-DGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-KD 455 (524)
T ss_dssp --------------EEECSSCEEEEECCSSCCBCEEEET-TTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-SS
T ss_pred --------------eecCCCceEEEEeCCCCCeEEEEEC-CCEEEEEechHh-hccccccCccceeeeEEEEeccCC-CC
Confidence 2347889999999999999999988 999999998654 2222211 112478999999 77
Q ss_pred CEEEEEecCceEEEEECC-CCccccceeeeeeecCCCCcceEEEEEcCCC---CEEEEEeCCCeEEEEeCCCC
Q psy9598 778 RVLLSAGHDGLIIIWDIL-SSKQRGYKWFHNIVEGQGEGALFDGKWSPDG---TTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 778 ~~LaSgs~DG~I~IWdl~-s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg---~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
..+ .... .+.+|+.. ++.+ +..+. .|.+.|.+|+|+|++ ..||+|+.+|.|+||++...
T Consensus 456 ~~~-~~~~--~~~~~~~~~~g~~--~~~l~-----gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 456 DKY-RIDS--SYEVYPLTVNDVS--KAKID-----AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CEE-EECC--CCCCCC--------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CeE-EccC--CceecccccCCcc--eeeec-----CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 744 2222 23344332 2333 33332 466899999999995 49999999999999998754
No 69
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-33 Score=352.63 Aligned_cols=318 Identities=12% Similarity=0.137 Sum_probs=261.2
Q ss_pred cCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC----CcEEEEEeCCCCCEEEEEE
Q psy9598 451 PLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD----GKLLATLRGCSGEISDIAI 526 (1915)
Q Consensus 451 ~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t----g~~~~~l~gH~~~I~~Laf 526 (1915)
+.++.+.+|+.............+|...|+|++|+|++.+|++|+.||.|+||++.+ ...+..+.+|...|++|+|
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 121 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF 121 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEE
Confidence 788899999876543221222347999999999999999999999999999999988 4588999999999999999
Q ss_pred eCC-CCEEEEEeCCCcEEEEECCCCc------eEE---EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccC
Q psy9598 527 DNR-NILLAAGTVDKTIRIWNLQTLA------PIS---VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596 (1915)
Q Consensus 527 spd-g~~LaSgs~DgtIrVWDl~tg~------~~~---~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~ 596 (1915)
+|+ +.+|++|+.|+.|+|||+.++. ... .+.+|...|.+++|+|. ++.+|++++.||.|++||+.++
T Consensus 122 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~ 198 (416)
T 2pm9_A 122 NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQS---LAHVFASAGSSNFASIWDLKAK 198 (416)
T ss_dssp CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSS---CTTEEEEESSSSCEEEEETTTT
T ss_pred cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCC---CCcEEEEEcCCCCEEEEECCCC
Confidence 998 8999999999999999999876 333 34679999999999994 2589999999999999999987
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCC-cEEEEEeCCC---eEEEEEecCCCCCceeEEec-cCCCCeeEEEE
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDH---HVRVYKMDGVDSPLGILEVE-EHSDKVDSIQW 671 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~Dg---~I~IwDl~~~~~~~~i~~l~-~h~~~V~sl~f 671 (1915)
..+..+.... ...+|...|.+++|+|++ .+|++|+.|+ .|++||+.... ..+..+. +|...|.+++|
T Consensus 199 ~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 199 KEVIHLSYTS------PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN--TPLQTLNQGHQKGILSLDW 270 (416)
T ss_dssp EEEEEECCCC------CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT--SCSBCCCSCCSSCEEEEEE
T ss_pred CcceEEeccc------cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC--CCcEEeecCccCceeEEEe
Confidence 6544433221 112346889999999997 6899999999 99999995432 3344566 89999999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC-CEEEEEEecCCeEEEE
Q psy9598 672 SH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD-RWVITAINFNFQIKIW 749 (1915)
Q Consensus 672 sp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg-~~L~t~s~~Dg~I~vw 749 (1915)
+| ++.+|++++.||.|++||+.+++..... ..|...|.+++|+|++ .+|++++. |+.|+||
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~----------------~~~~~~v~~~~~s~~~~~~l~s~~~-d~~i~iw 333 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQF----------------PARGNWCFKTKFAPEAPDLFACASF-DNKIEVQ 333 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCEEEEE----------------ECSSSCCCCEEECTTCTTEEEECCS-SSEEEEE
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCccceee----------------cCCCCceEEEEECCCCCCEEEEEec-CCcEEEE
Confidence 99 8999999999999999999987754322 2366788999999999 78888887 9999999
Q ss_pred ECCCCceEEEee-----------------------------------CCCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 750 DAFNGDLVQVLK-----------------------------------GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 750 D~~tg~~i~~l~-----------------------------------gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
++.++....... .|...|.+++|+| ++.+|++|+.||+|+||++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 334 TLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp ESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBCTTSSCBCCBCC
T ss_pred EccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEeCCCCeEEEEEe
Confidence 998765322211 1677888999999 9999999999999999999
Q ss_pred CCC
Q psy9598 795 LSS 797 (1915)
Q Consensus 795 ~s~ 797 (1915)
.+.
T Consensus 413 ~~~ 415 (416)
T 2pm9_A 413 KIS 415 (416)
T ss_dssp CCC
T ss_pred ccC
Confidence 764
No 70
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-32 Score=346.91 Aligned_cols=342 Identities=10% Similarity=0.086 Sum_probs=252.9
Q ss_pred eeeEEe-cCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCC---Cc---EEEEEeCCCCCEEEEEEeCCCCEEEEEeC
Q psy9598 467 RQHYVN-LGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARD---GK---LLATLRGCSGEISDIAIDNRNILLAAGTV 538 (1915)
Q Consensus 467 ~~~~~l-~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~t---g~---~~~~l~gH~~~I~~Lafspdg~~LaSgs~ 538 (1915)
+++..+ .+|.+.|+||+|+| +|.+||||+.||+|+|||+.+ +. ....+ +|.+.|++|+|++++.+|++|+.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 445567 89999999999999 999999999999999999876 43 23333 59999999999999999999999
Q ss_pred CCcEEEEECC---CCceEEEeecC------------CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 539 DKTIRIWNLQ---TLAPISVLVGH------------QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 539 DgtIrVWDl~---tg~~~~~l~~h------------~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
||+|+|||+. ++..+..+.+| ...+.++.+... .++.+|++|+.||+|++||+.++..+..+.
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN--EEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC--SSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 9999999994 66666555443 344555553321 156899999999999999999876544433
Q ss_pred ccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec-cCCCCeeEEEEcC----CCCEE
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE-EHSDKVDSIQWSH----SHLRF 678 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~-~h~~~V~sl~fsp----dg~~L 678 (1915)
.. .|...|.+++|+|++.+|++|+.||.|++||+. ....+..+. .|...|.+++|+| ++.+|
T Consensus 210 ~~----------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l 276 (437)
T 3gre_A 210 NS----------PRHGAVSSICIDEECCVLILGTTRGIIDIWDIR---FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIV 276 (437)
T ss_dssp CC----------GGGCCEEEEEECTTSCEEEEEETTSCEEEEETT---TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEE
T ss_pred cC----------CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC---CccEEEEEecCCCCceEEEEeccccCCCccEE
Confidence 21 156789999999999999999999999999994 345555554 7888999996664 57799
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCcc--------ccccc--cccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE--------TSDET--NKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
++|+.||.|+|||+.++.+................ ..... .+...|++++|+ ++.+|++++. ||.|++
T Consensus 277 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~-d~~i~~ 354 (437)
T 3gre_A 277 VGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA-TSSIVM 354 (437)
T ss_dssp EEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG-GTEEEE
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC-CCeEEE
Confidence 99999999999999988876654432211110000 00112 277889999999 7888888888 999999
Q ss_pred EECCCCceEEEeeCCCC---CeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 749 WDAFNGDLVQVLKGHTN---EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 749 wD~~tg~~i~~l~gH~~---~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
||+.+++++..+.+|.. .+..+.+++ ...+++.. |+...... ...+ ..|...|.+++|+++
T Consensus 355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~--~~~~-----~~h~~~I~~i~~~~~ 418 (437)
T 3gre_A 355 FSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHS--VDDS-----LYHHDIINSISTCEV 418 (437)
T ss_dssp EETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC--------------------CCCEEEEEEEES
T ss_pred EECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccc--cCcc-----cccccceeeEeeecc
Confidence 99999999999998754 344444554 33333333 22222222 2111 246789999999998
Q ss_pred --CCEEEEEeCCCeEEEEe
Q psy9598 826 --GTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 826 --g~~Lasg~~dG~I~Iwd 842 (1915)
+.+|++|+.||.|+||.
T Consensus 419 ~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 419 DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSEEEEEEETTSCEEEEC
T ss_pred CCceEEEEEcCCceEEEeC
Confidence 88999999999999995
No 71
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-33 Score=347.00 Aligned_cols=295 Identities=15% Similarity=0.156 Sum_probs=229.9
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC--cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG--KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg--~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
+..|.++|+|++|+|+|++||+|+.||.|+||++.++ .++..+.+|...|++++|+|++.+|++|+.|++|+|||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3446789999999999999999999999999999998 78888999999999999999999999999999999999998
Q ss_pred Cc---eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCC-CCCceEEEE
Q psy9598 550 LA---PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP-GNAHILCSS 625 (1915)
Q Consensus 550 g~---~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~ 625 (1915)
+. +...+.+|...|++++|+|+ +.+|++|+.||+|++||+.++...... ..+.. |...|.+++
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~---------~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPN----EDKFAVGSGARVISVCYFEQENDWWVS---------KHLKRPLRSTILSLD 153 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTT----SSCCEEEESSSCEEECCC-----CCCC---------EEECSSCCSCEEEEE
T ss_pred CCceeeeeEecccCCceEEEEECCC----CCEEEEEecCCeEEEEEECCcccceee---------eEeecccCCCeEEEE
Confidence 77 77888899999999999994 489999999999999999877521111 11223 678999999
Q ss_pred ECCCCcEEEEEeCCCeEEEEEecCCC---------------CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy9598 626 FSPGGLFLATGSGDHHVRVYKMDGVD---------------SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 690 (1915)
Q Consensus 626 fspdg~~Lasgs~Dg~I~IwDl~~~~---------------~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IW 690 (1915)
|+|++.+|++|+.||.|++||+.... ....+..+ +|...|.+++|+|++.+|++|+.||.|+||
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIA 232 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 99999999999999999999984211 12334445 899999999999999999999999999999
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc--e------------
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD--L------------ 756 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~--~------------ 756 (1915)
|+.++..... .......|...|.+++|+|++.+|++++. ++.+ +|+..... .
T Consensus 233 d~~~~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 233 YPSAPEQPPR------------ALITVKLSQLPLRSLLWANESAIVAAGYN-YSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp EECSTTSCEE------------ECCCEECSSSCEEEEEEEETTEEEEEESS-SSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred ECCCCCCcce------------eeEeecCCCCceEEEEEcCCCCEEEEEcC-CcEE-EEEeCCCceEEEeeecccccccc
Confidence 9988763110 01223457788999999999999888764 5555 77654211 0
Q ss_pred -------------E---------EEe----------------eCCCCCeEEEEEccCCCC---EEEEEecCceEEEEEC
Q psy9598 757 -------------V---------QVL----------------KGHTNEVFVLESHPFDSR---VLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 757 -------------i---------~~l----------------~gH~~~V~sl~~sp~dg~---~LaSgs~DG~I~IWdl 794 (1915)
. ..+ .+|.+.|++|++.+.++. .|+|||.||.|+|||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 111 139999999998763444 7999999999999986
No 72
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-31 Score=334.34 Aligned_cols=311 Identities=15% Similarity=0.148 Sum_probs=251.6
Q ss_pred EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc------eEEEeecCCCCeEEEEeccCccCCC---cEEE
Q psy9598 510 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA------PISVLVGHQGIITGVNFCPLEVNGF---NYLA 580 (1915)
Q Consensus 510 ~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~------~~~~l~~h~~~V~sl~fsp~~~~d~---~~L~ 580 (1915)
....+.+|.+.|++|+|+| .+|++|+.||+|+||++.++. .+..+.+|...|++++|+|....++ .+|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 4556789999999999998 799999999999999999988 7889999999999999999411126 8999
Q ss_pred EEeCCCeEEEEecccCccccceeccCccccccccCCC-----CCceEEEEEC----CCCcE-EEEEeCCCeEEEEEecC-
Q psy9598 581 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG-----NAHILCSSFS----PGGLF-LATGSGDHHVRVYKMDG- 649 (1915)
Q Consensus 581 sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~V~~l~fs----pdg~~-Lasgs~Dg~I~IwDl~~- 649 (1915)
+++.||.|++|++.++....... ...+..| ...|.+++|+ |++.+ |++|+.||.|++||+..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 158 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVI-------FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 158 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEE-------EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred EEcCCCCEEEEEccCCccccccc-------ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence 99999999999998875411110 1112233 4889999999 99999 99999999999999965
Q ss_pred -----CCCCc--eeEEe-------ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccc
Q psy9598 650 -----VDSPL--GILEV-------EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETS 715 (1915)
Q Consensus 650 -----~~~~~--~i~~l-------~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~ 715 (1915)
..... ....+ ..|...|.+++|+|++ +|++|+.||.|++||+.++........
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~------------ 225 (397)
T 1sq9_A 159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES------------ 225 (397)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC------------
T ss_pred ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec------------
Confidence 22211 11134 4589999999999999 999999999999999998765432211
Q ss_pred ccccc---cccEEEEEECCCCCEEEEEEecC---CeEEEEECCCCceEEEeeC-------------CCCCeEEEEEccCC
Q psy9598 716 DETNK---KIKVTMVAWDASDRWVITAINFN---FQIKIWDAFNGDLVQVLKG-------------HTNEVFVLESHPFD 776 (1915)
Q Consensus 716 ~~~~~---~~~V~~va~spdg~~L~t~s~~D---g~I~vwD~~tg~~i~~l~g-------------H~~~V~sl~~sp~d 776 (1915)
...| ...|.+++|+|++.+|++++. | |.|++||+.+++++..+.+ |...|++++|+| +
T Consensus 226 -~~~h~~~~~~i~~i~~~~~~~~l~~~~~-d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 302 (397)
T 1sq9_A 226 -QHSMINNSNSIRSVKFSPQGSLLAIAHD-SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-S 302 (397)
T ss_dssp -CC---CCCCCEEEEEECSSTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-S
T ss_pred -cccccccCCccceEEECCCCCEEEEEec-CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-C
Confidence 0124 678999999999999999998 8 9999999999999999999 999999999999 9
Q ss_pred CCEEEEEecCceEEEEECCCCccccceeeeeeecC-CC---------------CcceEEEEEcCCC----------CEEE
Q psy9598 777 SRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEG-QG---------------EGALFDGKWSPDG----------TTCA 830 (1915)
Q Consensus 777 g~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~-~~---------------~~~V~~vafSpdg----------~~La 830 (1915)
+.+|++|+.||.|+|||+.+++. +..+...... .+ ...|.+++|+|+| .+|+
T Consensus 303 ~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC 380 (397)
T ss_dssp SSEEEEEETTSEEEEEETTTTEE--EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred CCEEEEEeCCCeEEEEEcCCCce--eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence 99999999999999999998877 5555411110 22 6889999999999 7999
Q ss_pred EEeCCCeEEEEeCCCCc
Q psy9598 831 LTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 831 sg~~dG~I~Iwdl~s~~ 847 (1915)
+++.||.|+||++.+++
T Consensus 381 s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 381 CVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEETTTEEEEEEEEC--
T ss_pred EecCCCcEEEEEcCCCC
Confidence 99999999999998763
No 73
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-31 Score=317.74 Aligned_cols=294 Identities=18% Similarity=0.200 Sum_probs=250.9
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
.+++.++.+|.+.|++|+| +++.+|++|+.||.|+|||+.++.....+..|...|.+++|+|+ +.+|++|+.||.
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~ 82 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE----KELLLFGGKDTM 82 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETT----TTEEEEEETTSC
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCC----CCEEEEecCCCe
Confidence 3788899999999999999 99999999999999999999999999999999999999999994 589999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
|++|++....... ....+..|...|.+++| ++.+|++|+.||.|++||. ...+..+..|...|.
T Consensus 83 i~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~-----~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 83 INGVPLFATSGED---------PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE-----GSLVYNLQAHNASVW 146 (313)
T ss_dssp EEEEETTCCTTSC---------C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET-----TEEEEEEECCSSCEE
T ss_pred EEEEEeeecCCCC---------cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC-----CcEEEecccCCCcee
Confidence 9999987653211 11223467789999999 5779999999999999992 355677889999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 668 SIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 668 sl~fsp-dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
+++|++ ++.+|++++.||.|++||.... .... ...+...|.+++|++++. +++++. ||.|
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~---------------~~~~~~~i~~~~~~~~~~-~~~~~~-dg~i 207 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQNDKV--IKTF---------------SGIHNDVVRHLAVVDDGH-FISCSN-DGLI 207 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTEE--EEEE---------------CSSCSSCEEEEEEEETTE-EEEEET-TSEE
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecCce--EEEE---------------eccCcccEEEEEEcCCCe-EEEccC-CCeE
Confidence 999988 8999999999999999993321 1111 112667899999999998 777777 9999
Q ss_pred EEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCC
Q psy9598 747 KIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg 826 (1915)
++||+.+++++..+.+|.+.|++++|+| ++ .|++|+.||.|+|||+.+++. +..+. .+...|.+++|+|+|
T Consensus 208 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~--~~~~~-----~~~~~i~~~~~~~~~ 278 (313)
T 3odt_A 208 KLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSL--KQVIT-----LPAISIWSVDCMSNG 278 (313)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCE--EEEEE-----CSSSCEEEEEECTTS
T ss_pred EEEECCchhhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCce--eEEEe-----ccCceEEEEEEccCC
Confidence 9999999999999999999999999999 76 589999999999999999887 55554 456789999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCccccc
Q psy9598 827 TTCALTDSYGHLLVYGLGGFKRPQN 851 (1915)
Q Consensus 827 ~~Lasg~~dG~I~Iwdl~s~~~~~~ 851 (1915)
. |++++.||.|+||++.++.....
T Consensus 279 ~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 279 D-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp C-EEEEETTSCEEEEESCGGGCCC-
T ss_pred C-EEEEeCCCcEEEEeCCCCceeeh
Confidence 8 66799999999999998766543
No 74
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.2e-31 Score=326.45 Aligned_cols=310 Identities=18% Similarity=0.234 Sum_probs=236.7
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC----cEEEEEeCCCCCEEEEEEeC--CCCEEEEEeCCCcEE
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG----KLLATLRGCSGEISDIAIDN--RNILLAAGTVDKTIR 543 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg----~~~~~l~gH~~~I~~Lafsp--dg~~LaSgs~DgtIr 543 (1915)
..+.||.+.|+||+|+|+|.+||+|+.||.|+|||+.++ .++..+.+|...|++|+|++ ++.+|++|+.||+|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 357899999999999999999999999999999999877 57788899999999999999 699999999999999
Q ss_pred EEECCCC---------ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccc-cccc
Q psy9598 544 IWNLQTL---------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM-FNER 613 (1915)
Q Consensus 544 VWDl~tg---------~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~-~~~~ 613 (1915)
|||+.++ .++..+.+|.+.|.+++|+|.. .+.+|++|+.||.|++||+.++..+.......... ....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH--LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCC--CCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 9999887 5688889999999999999951 15899999999999999999887665544321111 1112
Q ss_pred cCCCCCceEEEEECCC---CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC----CEEEEEeCCCc
Q psy9598 614 IRPGNAHILCSSFSPG---GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH----LRFVSGSRDGT 686 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspd---g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg----~~L~sgs~DG~ 686 (1915)
...+...+.+++|+|+ +.+|++|+.++.+.+|+. .......+..+.+|...|.+++|+|++ .+|++|+.||.
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG-KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEEC-TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEcc-CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 2356788999999997 899999999999977776 333444567788999999999999998 89999999999
Q ss_pred EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe---cCCeEEEEECCCCceEEEeeCC
Q psy9598 687 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---FNFQIKIWDAFNGDLVQVLKGH 763 (1915)
Q Consensus 687 I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---~Dg~I~vwD~~tg~~i~~l~gH 763 (1915)
|++||+..+....... .....+....+++....+..+.. ....+.+|+..++.++..+.+|
T Consensus 242 i~iwd~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 305 (351)
T 3f3f_A 242 IRIFKITEKLSPLASE----------------ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305 (351)
T ss_dssp EEEEEEEECC-------------------------------------------------------CCSEEEEEEEEECTT
T ss_pred EEEEeCCCCcCccccC----------------CcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence 9999998765322110 01111222222222222222221 1456677777778889999999
Q ss_pred CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 764 TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 764 ~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
...|++++|+| ++.+|++|+.||.|+||++.++..
T Consensus 306 ~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 306 NGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp SSCEEEEEECS-SSCCEEEEETTSCEEEEEECTTSC
T ss_pred cccEEEEEEcC-CCCEEEEecCCCcEEEEecCcCcc
Confidence 99999999999 999999999999999999998776
No 75
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.3e-31 Score=318.36 Aligned_cols=283 Identities=21% Similarity=0.327 Sum_probs=240.8
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe--CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR--GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~--gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
+++|+||+++ +||+|. |++|+|||+.+|+++..+. +|...|++|+|+|++++||+|+.||+|+|||+.+++++..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999876 777765 8999999999999888775 67788999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
.+|...+.++.+.+ ..|++|+.++.+++|+........ ..+..|...+.++.|++++.+|++|
T Consensus 106 ~~h~~~~~~~~~~~------~~l~s~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~s~ 168 (318)
T 4ggc_A 106 TSHSARVGSLSWNS------YILSSGSRSGHIHHHDVRVAEHHV-----------ATLSGHSQEVCGLRWAPDGRHLASG 168 (318)
T ss_dssp ECCSSCEEEEEEET------TEEEEEETTSEEEEEETTSSSCEE-----------EEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cCccceEEEeecCC------CEEEEEecCCceEeeecCCCceeE-----------EEEcCccCceEEEEEcCCCCEEEEE
Confidence 99999998887765 799999999999999987654211 1233567889999999999999999
Q ss_pred eCCCeEEEEEecCCCC-CceeEEeccCCCCeeEEEEcCCCCEE---EEEeCCCcEEEEEccCCceEEeeecccccCCCCc
Q psy9598 637 SGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSHLRF---VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 712 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fspdg~~L---~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~ 712 (1915)
+.||.|+|||+..... .........|.+.|.++++++.+..+ ++++.+++|++||.........
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~------------ 236 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA------------ 236 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE------------
T ss_pred ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc------------
Confidence 9999999999964332 23345567788999999999987633 4667889999999987764432
Q ss_pred cccccccccccEEEEEECCCCCEEEEEEe-cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEE
Q psy9598 713 ETSDETNKKIKVTMVAWDASDRWVITAIN-FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIII 791 (1915)
Q Consensus 713 ~~~~~~~~~~~V~~va~spdg~~L~t~s~-~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~I 791 (1915)
..+...+..++|++++..+++++. .|+.|+|||+.+++++..+.+|.+.|++|+|+| ++.+|+|||.||+|+|
T Consensus 237 -----~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 237 -----VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRL 310 (318)
T ss_dssp -----EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEE
T ss_pred -----ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEE
Confidence 124567899999999999887753 489999999999999999999999999999999 9999999999999999
Q ss_pred EECCCCc
Q psy9598 792 WDILSSK 798 (1915)
Q Consensus 792 Wdl~s~~ 798 (1915)
||+....
T Consensus 311 Wd~~~~d 317 (318)
T 4ggc_A 311 WRCFELD 317 (318)
T ss_dssp ECCSCCC
T ss_pred EECCCCC
Confidence 9997643
No 76
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.3e-32 Score=348.07 Aligned_cols=299 Identities=18% Similarity=0.200 Sum_probs=235.0
Q ss_pred EEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCce--EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 511 LATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTLAP--ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg~~--~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
.....+|...|+||+|+| ++.+||+|+.||+|+|||+.++.. +..+.+|.+.|++|+|+|. ++.+|++|+.||+
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~---~~~~l~s~s~D~~ 188 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL---NTNQFYASSMEGT 188 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS---CTTEEEEECSSSC
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC---CCCEEEEEeCCCE
Confidence 344567889999999999 567999999999999999987754 4455689999999999983 4589999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
|++||+.++...... ....+...+.+++|+|++.+|++|+.||.|++||+.+ ..+..+.+|...|.
T Consensus 189 v~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~----~~~~~~~~h~~~v~ 254 (435)
T 4e54_B 189 TRLQDFKGNILRVFA----------SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG----KELWNLRMHKKKVT 254 (435)
T ss_dssp EEEEETTSCEEEEEE----------CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS----CBCCCSBCCSSCEE
T ss_pred EEEeeccCCceeEEe----------ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc----ceeEEEecccceEE
Confidence 999999765321111 1113345678999999999999999999999999853 34556789999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 668 SIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 668 sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
+|+|+|++. +|++|+.||+|+|||+++..... .......|...|++++|+|+|.+|++++. ||.|
T Consensus 255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-------------~~~~~~~h~~~v~~~~~spdg~~l~s~~~-D~~i 320 (435)
T 4e54_B 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-------------SFLYSLPHRHPVNAACFSPDGARLLTTDQ-KSEI 320 (435)
T ss_dssp EEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-------------CCSBCCBCSSCEEECCBCTTSSEEEEEES-SSCE
T ss_pred eeeecCCCceEEEEecCcceeeEEecccccccc-------------eEEEeeeccccccceeECCCCCeeEEEcC-CCEE
Confidence 999999986 78899999999999998765211 11223457889999999999999999998 9999
Q ss_pred EEEECCCCceEEEeeCCCC------CeEEEEEccCCCCEEEEEe------------cCceEEEEECCCCccccceeeeee
Q psy9598 747 KIWDAFNGDLVQVLKGHTN------EVFVLESHPFDSRVLLSAG------------HDGLIIIWDILSSKQRGYKWFHNI 808 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~gH~~------~V~sl~~sp~dg~~LaSgs------------~DG~I~IWdl~s~~~~~~~~~~~~ 808 (1915)
+|||+.++.+...+.+|.. .+..+.|+| ++.++++++ .++.|+|||+.++.. +..+.
T Consensus 321 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~--~~~l~-- 395 (435)
T 4e54_B 321 RVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM--MCQLY-- 395 (435)
T ss_dssp EEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE--EEEEC--
T ss_pred EEEECCCCccceEEecccccccccceeEEEEEcC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE--EEEEe--
Confidence 9999999999888877753 234456777 566666554 345799999999887 44432
Q ss_pred ecCCCCcceEEE-EEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q psy9598 809 VEGQGEGALFDG-KWSPDGTTCALTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 809 ~~~~~~~~V~~v-afSpdg~~Lasg~~dG~I~Iwdl~s~~~ 848 (1915)
..+...|.++ +|+|+|.+||+|+ |+.|+||++..++.
T Consensus 396 --~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 396 --DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp --CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred --CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 3456678776 6999999999876 78999999998764
No 77
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.3e-31 Score=337.70 Aligned_cols=303 Identities=16% Similarity=0.261 Sum_probs=257.8
Q ss_pred cCccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEE
Q psy9598 444 RSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD 523 (1915)
Q Consensus 444 ~~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~ 523 (1915)
....++|+.++.+.+|+... ......+.+|.+.|++++|++++ +|++|+.||+|+|||+.++.++..+.+|.+.|.+
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~--~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 208 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSIN--KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 208 (464)
T ss_dssp TTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCEEEEEcCCCcEEEEECCC--CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEE
Confidence 45677899999999997543 45667889999999999999988 9999999999999999999999999999999999
Q ss_pred EEEe--CCCCEEEEEeCCCcEEEEECCCCc-----------------------eEEEeecCCCCeEEEEeccCccCCCcE
Q psy9598 524 IAID--NRNILLAAGTVDKTIRIWNLQTLA-----------------------PISVLVGHQGIITGVNFCPLEVNGFNY 578 (1915)
Q Consensus 524 Lafs--pdg~~LaSgs~DgtIrVWDl~tg~-----------------------~~~~l~~h~~~V~sl~fsp~~~~d~~~ 578 (1915)
++|+ +++.+|++|+.||+|++||+.++. .+..+.+|...|.++... +.+
T Consensus 209 l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~ 282 (464)
T 3v7d_B 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH------GNI 282 (464)
T ss_dssp EEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE------TTE
T ss_pred EEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC------CCE
Confidence 9998 578899999999999999998765 256778899999988543 389
Q ss_pred EEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEE
Q psy9598 579 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 579 L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~ 658 (1915)
|++|+.||.|++||+.++..+.. +.+|...|.+++|+|++.+|++|+.||.|++||+. ....+..
T Consensus 283 l~~~~~d~~i~vwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~---~~~~~~~ 347 (464)
T 3v7d_B 283 VVSGSYDNTLIVWDVAQMKCLYI------------LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE---NGELMYT 347 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEE------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT---TTEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEE------------ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCcEEEE
Confidence 99999999999999987754322 23567889999999999999999999999999994 4567788
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEE
Q psy9598 659 VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT 738 (1915)
Q Consensus 659 l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t 738 (1915)
+.+|...|.+++|+ +.+|++|+.||.|++||+.+....... .+...+..++|++++.+|++
T Consensus 348 ~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~ 408 (464)
T 3v7d_B 348 LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-----------------HHTNLSAITTFYVSDNILVS 408 (464)
T ss_dssp ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-----------------ECTTCCCEEEEEECSSEEEE
T ss_pred EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-----------------cCCCCccEEEEEeCCCEEEE
Confidence 89999999999997 579999999999999999887643321 13445677899999999888
Q ss_pred EEecCCeEEEEECCCCceEEE-eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEE
Q psy9598 739 AINFNFQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793 (1915)
Q Consensus 739 ~s~~Dg~I~vwD~~tg~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWd 793 (1915)
++ ||.|++||+.+++++.. +.+|...|++++|+. ..++++++.||.+.+|-
T Consensus 409 ~~--dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~--~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 409 GS--ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EE--TTEEEEEETTTCCEEESCTTTTCSEEEEEEEET--TEEEEEEEETTEEEEEE
T ss_pred ec--CCeEEEEECCCCcEEehhhccCCCcEEEEEecC--CEEEEEEEeCCeEEEEE
Confidence 76 89999999999999986 678999999999974 56666777788776654
No 78
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5e-31 Score=336.47 Aligned_cols=306 Identities=21% Similarity=0.375 Sum_probs=265.7
Q ss_pred ccCccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEE
Q psy9598 443 LRSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEIS 522 (1915)
Q Consensus 443 l~~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~ 522 (1915)
.....++|+.++.+.+|+... ......+.+|.+.|++++|+ +.+|++|+.||+|+|||+.+++++.++.+|...|.
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 203 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR 203 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred cCCEEEEEECCCcEEEEECCC--CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE
Confidence 345667899999999997643 45667899999999999998 67999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccce
Q psy9598 523 DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT 602 (1915)
Q Consensus 523 ~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~ 602 (1915)
+++|+ +.+|++|+.||+|++||+.++.++..+.+|...|.+++|. +.+|++|+.||.|++||+.++..+..
T Consensus 204 ~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~- 274 (445)
T 2ovr_B 204 CMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD------GRRVVSGAYDFMVKVWDPETETCLHT- 274 (445)
T ss_dssp EEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC------SSCEEEEETTSCEEEEEGGGTEEEEE-
T ss_pred EEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC------CCEEEEEcCCCEEEEEECCCCcEeEE-
Confidence 99996 5689999999999999999999999999999999999993 37899999999999999987754322
Q ss_pred eccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe
Q psy9598 603 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 682 (1915)
+..|...|.+++| ++.+|++|+.||.|++||+. ....+..+.+|...+.++.++ +.+|++|+
T Consensus 275 -----------~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 336 (445)
T 2ovr_B 275 -----------LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE---TGNCIHTLTGHQSLTSGMELK--DNILVSGN 336 (445)
T ss_dssp -----------ECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT---TCCEEEEECCCCSCEEEEEEE--TTEEEEEE
T ss_pred -----------ecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC---CCCEEEEEcCCcccEEEEEEe--CCEEEEEe
Confidence 2356688999999 78899999999999999994 445677888999999998875 66999999
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe--
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL-- 760 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l-- 760 (1915)
.||.|++||+.+++...... ....+...|.+++|+ +.+|++++. ||.|++||+.+++.+..+
T Consensus 337 ~dg~i~vwd~~~~~~~~~~~-------------~~~~~~~~v~~~~~~--~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~ 400 (445)
T 2ovr_B 337 ADSTVKIWDIKTGQCLQTLQ-------------GPNKHQSAVTCLQFN--KNFVITSSD-DGTVKLWDLKTGEFIRNLVT 400 (445)
T ss_dssp TTSCEEEEETTTCCEEEEEC-------------STTSCSSCEEEEEEC--SSEEEEEET-TSEEEEEETTTCCEEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEc-------------cCCCCCCCEEEEEEC--CCEEEEEeC-CCeEEEEECCCCceeeeeec
Confidence 99999999998887544321 112366789999995 678999988 999999999999999988
Q ss_pred ---eCCCCCeEEEEEccCCCCEEEEEecCce----EEEEECCC
Q psy9598 761 ---KGHTNEVFVLESHPFDSRVLLSAGHDGL----IIIWDILS 796 (1915)
Q Consensus 761 ---~gH~~~V~sl~~sp~dg~~LaSgs~DG~----I~IWdl~s 796 (1915)
.+|.+.|++++|+| ++.+|++|+.||+ |.|||+..
T Consensus 401 ~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 47889999999999 9999999999998 99999965
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.6e-31 Score=327.44 Aligned_cols=318 Identities=16% Similarity=0.125 Sum_probs=251.1
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEE
Q psy9598 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 591 (1915)
Q Consensus 514 l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iW 591 (1915)
+..|.+.|++++|+|++.+|++|+.|+.|+|||+.++. .+..+.+|...|++++|+|+ +.+|++++.||.|++|
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD----SNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT----TTEEEEEETTSCEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC----CCEEEEEcCCCeEEEE
Confidence 45699999999999999999999999999999999987 88899999999999999994 4899999999999999
Q ss_pred ecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE-EeccCCCCeeEEE
Q psy9598 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL-EVEEHSDKVDSIQ 670 (1915)
Q Consensus 592 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~-~l~~h~~~V~sl~ 670 (1915)
|+.++....... +..|...|.+++|+|++.+|++|+.||.|++||+.......... ...+|...|.+++
T Consensus 80 d~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 149 (372)
T 1k8k_C 80 TLKGRTWKPTLV----------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 149 (372)
T ss_dssp EEETTEEEEEEE----------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred ECCCCeeeeeEE----------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence 997764322221 23466889999999999999999999999999996543322222 3367899999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceEEeee--cccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL--DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
|+|++.+|++|+.||.|++||+.......... .................+...|.+++|+|++.+|++++. ||.|++
T Consensus 150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i 228 (372)
T 1k8k_C 150 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-DSTVCL 228 (372)
T ss_dssp ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-TTEEEE
T ss_pred EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC-CCEEEE
Confidence 99999999999999999999975322100000 000000011112223357788999999999999999998 999999
Q ss_pred EECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC--Cccccceee---------------------
Q psy9598 749 WDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS--SKQRGYKWF--------------------- 805 (1915)
Q Consensus 749 wD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s--~~~~~~~~~--------------------- 805 (1915)
||+.+++++..+.+|...|++++|+| ++.+|++| .||.|++|++.+ +....+..+
T Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (372)
T 1k8k_C 229 ADADKKMAVATLASETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 306 (372)
T ss_dssp EEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred EECCCCceeEEEccCCCCeEEEEEec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc
Confidence 99999999999999999999999999 88877777 999999999987 421000000
Q ss_pred -----e------eeecCCCCcceEEEEEc-CCC---CEEEEEeCCCeEEEEeCCCCcc
Q psy9598 806 -----H------NIVEGQGEGALFDGKWS-PDG---TTCALTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 806 -----~------~~~~~~~~~~V~~vafS-pdg---~~Lasg~~dG~I~Iwdl~s~~~ 848 (1915)
. ..+...|.+.|++++|+ ++| .+|++|+.||.|+||++.+++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 307 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 0 11223567899999976 677 9999999999999999987543
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-31 Score=333.47 Aligned_cols=291 Identities=17% Similarity=0.308 Sum_probs=245.0
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG-CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~g-H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
...+|...+++.++++++..|++|+.||.|+||++.++.....+.. |...|++++|+|++.+|++|+.||.|+|||+.+
T Consensus 86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 4557877655544444456788899999999999999999888876 889999999999999999999999999999999
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
+..+..+.+|...|.+++|++ .+|++|+.||.|++||+...... ...+..|...|.+++|+|+
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~~v~~~~~~~~ 228 (401)
T 4aez_A 166 QTKLRTMAGHQARVGCLSWNR------HVLSSGSRSGAIHHHDVRIANHQ-----------IGTLQGHSSEVCGLAWRSD 228 (401)
T ss_dssp CCEEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEETTSSSCE-----------EEEEECCSSCEEEEEECTT
T ss_pred CeEEEEecCCCCceEEEEECC------CEEEEEcCCCCEEEEecccCcce-----------eeEEcCCCCCeeEEEEcCC
Confidence 999999999999999999965 79999999999999999854321 1123357789999999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEe--CCCcEEEEEccCCceEEeeecccc
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGS--RDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs--~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
+.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++. +|++|+ .||.|++||+.++......
T Consensus 229 ~~~l~s~~~d~~v~iwd~~---~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~----- 300 (401)
T 4aez_A 229 GLQLASGGNDNVVQIWDAR---SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV----- 300 (401)
T ss_dssp SSEEEEEETTSCEEEEETT---CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-----
T ss_pred CCEEEEEeCCCeEEEccCC---CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-----
Confidence 9999999999999999994 3556777889999999999999775 555654 7999999999988754422
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEE-ecCCeEEEEECCCCceEE--EeeCCCCCeEEEEEccCCCCEEEEE
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAI-NFNFQIKIWDAFNGDLVQ--VLKGHTNEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s-~~Dg~I~vwD~~tg~~i~--~l~gH~~~V~sl~~sp~dg~~LaSg 783 (1915)
.+...|.+++|++++.+|++++ ..||.|+|||+.++.... .+.+|.+.|++++|+| ++.+|++|
T Consensus 301 ------------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~ 367 (401)
T 4aez_A 301 ------------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTA 367 (401)
T ss_dssp ------------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEE
T ss_pred ------------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEE
Confidence 1345799999999999999965 239999999999876554 4679999999999999 99999999
Q ss_pred ecCceEEEEECCCCcc
Q psy9598 784 GHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 784 s~DG~I~IWdl~s~~~ 799 (1915)
+.||.|+||++.+++.
T Consensus 368 ~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 368 ASDENLKFWRVYDGDH 383 (401)
T ss_dssp CTTSEEEEEECCC---
T ss_pred eCCCcEEEEECCCCcc
Confidence 9999999999998876
No 81
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=354.55 Aligned_cols=315 Identities=13% Similarity=0.092 Sum_probs=233.3
Q ss_pred cccccCCCeEEEecccCCcee--eeEEecCCCCcEEEEEEcCC------CCEEEEEECCCcEEEEECCCCcE--------
Q psy9598 447 EYSGPLSRSLMISSHKYSNLR--QHYVNLGHLSAVFCVLFDKL------GEVIVTGADDLLIKLWRARDGKL-------- 510 (1915)
Q Consensus 447 ~~tg~~d~~~~i~~~~~~~~~--~~~~l~gH~~~V~~vafspd------g~~LaTGs~Dg~I~IWd~~tg~~-------- 510 (1915)
.++|+.++++.+|........ ...++.+|.+.|++|+|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 367889999999986554432 23457789999999999996 57999999999999999987642
Q ss_pred ---EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceEEEeecCCCCeEEE--EeccCccCCC-cEEEEEe
Q psy9598 511 ---LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL-APISVLVGHQGIITGV--NFCPLEVNGF-NYLASTS 583 (1915)
Q Consensus 511 ---~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg-~~~~~l~~h~~~V~sl--~fsp~~~~d~-~~L~sgs 583 (1915)
..++.+|...|++++|++++ .||+|+.||+|+|||+.++ .+...+.+|.+.|++| +|+| ++ .+|++||
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~----~g~~~laS~S 330 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD----FEDTVVSTVA 330 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT----TSCCEEEEEE
T ss_pred cCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC----CCCeEEEEec
Confidence 24788999999999999864 8999999999999999976 4566789999999999 4565 44 7999999
Q ss_pred CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC
Q psy9598 584 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~ 663 (1915)
.||+|+|||++++..+..+..+. ....|.+++|+|++..|++|+.|++|+|||++. ..++..+.+|.
T Consensus 331 ~D~tvklWD~~~~~~~~~~~~~~----------~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~---~~~~~~l~gH~ 397 (524)
T 2j04_B 331 VDGYFYIFNPKDIATTKTTVSRF----------RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA---AFAVHPLVSRE 397 (524)
T ss_dssp TTSEEEEECGGGHHHHCEEEEEC----------SCCSCCCEEEETTTTEEEEECSSSEEEEEETTC---TTCCEEEEECS
T ss_pred cCCeEEEEECCCCCccccccccc----------ccCcccceEeCCCcCeEEEeCCCCcEEEEECcc---cccceeeecCC
Confidence 99999999998876543332220 113478999999999999999999999999943 34456678999
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
+.|++|+|+|+|.+|++|+.||+|+|||+....+ ..... .........|.+++|+|++..+.. .
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~-----------~~~~~-~~~~~~~~~v~~v~~sp~g~~~~~--~-- 461 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARRLL-----------HGIKN-SSATQKSLRLWKWDYSIKDDKYRI--D-- 461 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT-----------TCC-------CCCCEEEECBCCSSSCEEEE--C--
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechHhhc-----------ccccc-CccceeeeEEEEeccCCCCCeEEc--c--
Confidence 9999999999999999999999999999754310 00000 000112235789999999985522 2
Q ss_pred CeEEEEECC-CCceEEEeeCCCCCeEEEEEccCC---CCEEEEEecCceEEEEECCC
Q psy9598 744 FQIKIWDAF-NGDLVQVLKGHTNEVFVLESHPFD---SRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 744 g~I~vwD~~-tg~~i~~l~gH~~~V~sl~~sp~d---g~~LaSgs~DG~I~IWdl~s 796 (1915)
..+.+|+.. ++.++..+.+|...|++|+|+| + +.+||+|+.||.|+||++..
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 234444443 5778889999999999999999 6 45999999999999999864
No 82
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-31 Score=329.33 Aligned_cols=311 Identities=13% Similarity=0.120 Sum_probs=246.9
Q ss_pred EEeCCCCCEEEEEEeCC----CCEEEEEeCCCcEEEEECCCCceEEEeec-----CCCCeEEEEeccCccCCCcEEEEEe
Q psy9598 513 TLRGCSGEISDIAIDNR----NILLAAGTVDKTIRIWNLQTLAPISVLVG-----HQGIITGVNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 513 ~l~gH~~~I~~Lafspd----g~~LaSgs~DgtIrVWDl~tg~~~~~l~~-----h~~~V~sl~fsp~~~~d~~~L~sgs 583 (1915)
...+|.+.|++|+|+|+ ...+++++.++.|+|||+.++..+..+.. |...|++++|+|....++.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 45666677778999999998888777764 5578999999997533368999999
Q ss_pred CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEe---
Q psy9598 584 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEV--- 659 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l--- 659 (1915)
.||.|++||+.++..+.. +..|...|.+++|+| ++.+|++|+.||.|++||+.. ...+..+
T Consensus 93 ~dg~i~v~d~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~ 157 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKH------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT---DTLVAIFGGV 157 (366)
T ss_dssp TTCEEEEECTTTCCEEEE------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT---TEEEEEECST
T ss_pred CCCEEEEEEchhceEeee------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec---CeEEEEeccc
Confidence 999999999987754332 235678999999999 899999999999999999943 3455555
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC------------CCCccccccccccccEEEE
Q psy9598 660 EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL------------PHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 660 ~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~V~~v 727 (1915)
.+|...|.+++|+|++.+|++|+.||.|++||+.++............. ...........+...|.++
T Consensus 158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 237 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 237 (366)
T ss_dssp TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence 6899999999999999999999999999999998765322110000000 0000111223378889999
Q ss_pred EECCCCCEEEEEEecCCeEEEEECCCCce--------------EEEeeCCCCCeEEEEEccCC--CCEEEEEecCceEEE
Q psy9598 728 AWDASDRWVITAINFNFQIKIWDAFNGDL--------------VQVLKGHTNEVFVLESHPFD--SRVLLSAGHDGLIII 791 (1915)
Q Consensus 728 a~spdg~~L~t~s~~Dg~I~vwD~~tg~~--------------i~~l~gH~~~V~sl~~sp~d--g~~LaSgs~DG~I~I 791 (1915)
+|+ +.+|++++. ||.|++||+.++.. +..+.+|...|++++|+| + +.+|++|+.||.|+|
T Consensus 238 ~~~--~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~v 313 (366)
T 3k26_A 238 RWL--GDLILSKSC-ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYV 313 (366)
T ss_dssp EEE--TTEEEEECS-SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEE
T ss_pred EEc--CCEEEEEec-CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEE
Confidence 998 778998888 99999999987744 888899999999999999 7 999999999999999
Q ss_pred EECCCCccccceeeeeeecCC-CCcceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 792 WDILSSKQRGYKWFHNIVEGQ-GEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 792 Wdl~s~~~~~~~~~~~~~~~~-~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
||+.++.. .......+.++ +.+.|.+++|+|+|.+|++++.||.|+||++.
T Consensus 314 wd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 314 WDLEVEDP--HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECCSSSG--GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EECCCCCC--ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999876 33222222222 25899999999999999999999999999985
No 83
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.5e-31 Score=359.38 Aligned_cols=297 Identities=21% Similarity=0.268 Sum_probs=241.0
Q ss_pred EEEEeCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCC-----CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC
Q psy9598 511 LATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQT-----LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST 584 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~t-----g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~ 584 (1915)
...+.+|.+.|++|+|++++ .+|+|||.|++|+||++.+ +.....+.+|...|++++|+|+ +.+|++|+.
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----g~~l~sgs~ 450 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD----GQFALSGSW 450 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT----SSEEEEEET
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC----CCEEEEEeC
Confidence 44688999999999999874 7999999999999999975 3456788999999999999994 589999999
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD 664 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~ 664 (1915)
||+|++||+.++..... +.+|...|.+++|+|++.+|++|+.|++|+|||+.+...........+|..
T Consensus 451 Dg~v~vwd~~~~~~~~~------------~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRR------------FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp TSEEEEEETTTTEEEEE------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred CCcEEEEECCCCcceeE------------EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999988754322 336778999999999999999999999999999742211111111257899
Q ss_pred CeeEEEEcCCC--CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 665 KVDSIQWSHSH--LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 665 ~V~sl~fspdg--~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
.|.+++|+|++ ..|++|+.||+|+|||+.+...... ..+|...|++++|+|++.+|++++.
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~----------------~~~h~~~v~~v~~spdg~~l~sg~~- 581 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST----------------LAGHTGYVSTVAVSPDGSLCASGGK- 581 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE----------------ECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE----------------EcCCCCCEEEEEEeCCCCEEEEEeC-
Confidence 99999999987 5899999999999999988764432 2347788999999999999999998
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecC-----------
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEG----------- 811 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~----------- 811 (1915)
||.|+|||+.+++++..+..+ ..|.+++|+| ++.+|++++ |+.|+|||+.++.. +..+......
T Consensus 582 Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp-~~~~l~~~~-~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 656 (694)
T 3dm0_A 582 DGVVLLWDLAEGKKLYSLEAN-SVIHALCFSP-NRYWLCAAT-EHGIKIWDLESKSI--VEDLKVDLKAEAEKADNSGPA 656 (694)
T ss_dssp TSBCEEEETTTTEEEECCBCS-SCEEEEEECS-SSSEEEEEE-TTEEEEEETTTTEE--EEEECCCCC------------
T ss_pred CCeEEEEECCCCceEEEecCC-CcEEEEEEcC-CCcEEEEEc-CCCEEEEECCCCCC--hhhhccccccccccccccccc
Confidence 999999999999999888654 5799999999 877776665 66799999998876 4443211100
Q ss_pred ---CCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 812 ---QGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 812 ---~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
.+...+++++|||+|.+|++|+.||.|+||++..
T Consensus 657 ~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 657 ATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 0112478899999999999999999999999863
No 84
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=336.28 Aligned_cols=329 Identities=14% Similarity=0.151 Sum_probs=257.0
Q ss_pred CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceEEEee-------------cCCCC
Q psy9598 497 DLLIKLWRARDGKLLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTLAPISVLV-------------GHQGI 562 (1915)
Q Consensus 497 Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg~~~~~l~-------------~h~~~ 562 (1915)
++.++||++.++.....+.+|.+.|++|+|+| ++.+||+|+.||.|+|||+.++.....+. +|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45688899888888899999999999999999 99999999999999999999876654443 59999
Q ss_pred eEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC---CcEEEEEeCC
Q psy9598 563 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATGSGD 639 (1915)
Q Consensus 563 V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd---g~~Lasgs~D 639 (1915)
|++++|+|. ++.+|++++.||.|++||+.++....... +...+.++.|++. +.+|++|+.+
T Consensus 102 v~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 102 VETVQWYPH---DTGMFTSSSFDKTLKVWDTNTLQTADVFN-------------FEETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp EEEEEECTT---CTTCEEEEETTSEEEEEETTTTEEEEEEE-------------CSSCEEEEEECSSCSSCCEEEEEESS
T ss_pred EEEEEEccC---CCcEEEEEeCCCeEEEeeCCCCccceecc-------------CCCceeeeEeecCCCCCcEEEEEcCC
Confidence 999999993 35799999999999999999876443332 2367889999985 4599999999
Q ss_pred CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 640 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 640 g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
|.|++||+.. ...+..+.+|...|.+++|+|++. +|++|+.||.|++||+++........................
T Consensus 166 ~~v~~~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 4a11_B 166 PKVQLCDLKS---GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242 (408)
T ss_dssp SSEEEEESSS---SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred CeEEEEeCCC---cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence 9999999943 345667889999999999999998 589999999999999987652222211111111122223345
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC----CeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN----EVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~----~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
.+...|.+++|+|++.+|++++. ||.|++||+.++..+..+.++.. ....+.+....+..+++++.||.|++||+
T Consensus 243 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~ 321 (408)
T 4a11_B 243 AHNGKVNGLCFTSDGLHLLTVGT-DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV 321 (408)
T ss_dssp SCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred cccCceeEEEEcCCCCEEEEecC-CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence 68889999999999999999998 99999999999887665543321 11112222224566778888999999999
Q ss_pred CCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccC
Q psy9598 795 LSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 795 ~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l 852 (1915)
.++.. +..+. .|.+.|.+++|+|+|.+|++++.||.|+||++.+++.+...
T Consensus 322 ~~~~~--~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 322 YSGEQ--ITMLK-----GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp TTCCE--EEEEC-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred cCCcc--eeeec-----cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence 99887 65554 56789999999999999999999999999999998776544
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.1e-31 Score=319.61 Aligned_cols=257 Identities=22% Similarity=0.322 Sum_probs=214.7
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC--CcEEEEEeCCCCCEEEEEEeCC--CCEEEEEeCCCcEEEE
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD--GKLLATLRGCSGEISDIAIDNR--NILLAAGTVDKTIRIW 545 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t--g~~~~~l~gH~~~I~~Lafspd--g~~LaSgs~DgtIrVW 545 (1915)
..+.||.+.|++++|+|+|++||||+.|++|+||++.+ +.++.++.+|.+.|++|+|+++ +.+||||+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 46789999999999999999999999999999999974 4678899999999999999864 8999999999999999
Q ss_pred ECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 546 NLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 546 Dl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
|+.++. .+..+.+|...|.+++|+|.. .+.+|++|+.||+|++||+..+..... ..+..|...|.+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~--~g~~l~s~s~d~~v~~wd~~~~~~~~~----------~~~~~h~~~v~~ 150 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHE--YGPMLLVASSDGKVSVVEFKENGTTSP----------IIIDAHAIGVNS 150 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGG--GCSEEEEEETTSEEEEEEBCSSSCBCC----------EEEECCSSCEEE
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCC--CCcEEEEEECCCcEEEEEecCCCceee----------eeeecccCccce
Confidence 999874 567788999999999999952 257999999999999999987532111 123367788999
Q ss_pred EEECCC-------------CcEEEEEeCCCeEEEEEecCCCC-CceeEEeccCCCCeeEEEEcCCC---CEEEEEeCCCc
Q psy9598 624 SSFSPG-------------GLFLATGSGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSH---LRFVSGSRDGT 686 (1915)
Q Consensus 624 l~fspd-------------g~~Lasgs~Dg~I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fspdg---~~L~sgs~DG~ 686 (1915)
++|+|+ +.+|++|+.|+.|+|||+..... ......+.+|...|.+|+|+|++ .+|++|+.||+
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence 999997 57999999999999999964332 12456788999999999999985 79999999999
Q ss_pred EEEEEccCCc--eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 687 ALIWYYKCSQ--WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 687 I~IWDl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
|+|||+.... +.... .....+...|.+++|+|+|.+|++++. |+.|+||+..
T Consensus 231 v~iWd~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~s~~g~~las~~~-D~~v~lw~~~ 284 (297)
T 2pm7_B 231 CIIWTQDNEQGPWKKTL-------------LKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 284 (297)
T ss_dssp EEEEEESSTTSCCEEEE-------------SSSSCCSSCEEEEEECSSSCCEEEEET-TSCEEEEEEC
T ss_pred EEEEEeCCCCCccceee-------------eecccCCCcEEEEEECCCCCEEEEEcC-CCcEEEEEEC
Confidence 9999987643 11100 011235678999999999999999998 9999999975
No 86
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.5e-31 Score=333.16 Aligned_cols=326 Identities=13% Similarity=0.116 Sum_probs=259.7
Q ss_pred cCccccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEE
Q psy9598 444 RSREYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD 523 (1915)
Q Consensus 444 ~~r~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~ 523 (1915)
....++|+.++.+.+|+.... .....+.+| ..+.+.+|+++|.+||+|+.||.|+|||+.++.++..+.+|.+.|++
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 144 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIR--DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITK 144 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSE--ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEE
T ss_pred CCeEEEEEcCCcEEEEEeccc--ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEE
Confidence 345677888999999975433 333345566 55666678999999999999999999999999999998999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 524 IAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 524 Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
|+|+|++.+|++|+.|++|+|||+.++..+..+.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++..+..+.
T Consensus 145 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 220 (420)
T 3vl1_A 145 LKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR----GRNVLSASLDGTIRLWECGTGTTIHTFN 220 (420)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT----TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC----CCEEEEEcCCCcEEEeECCCCceeEEee
Confidence 999999999999999999999999999999999999999999999994 4899999999999999999886655443
Q ss_pred ccCccc----c--------ccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEE-eccCCCCeeEEE
Q psy9598 604 FHEPVM----F--------NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE-VEEHSDKVDSIQ 670 (1915)
Q Consensus 604 ~~~~~~----~--------~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~-l~~h~~~V~sl~ 670 (1915)
.+.... . ......+...+.+++|+|+|.+|++|+.||.|++||+... ..+.. ...|...|.+++
T Consensus 221 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~ 297 (420)
T 3vl1_A 221 RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTCSCNSLT 297 (420)
T ss_dssp BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSSCEEEEE
T ss_pred cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCCCceeEE
Confidence 321000 0 0001123356677778999999999999999999999532 33333 356889999999
Q ss_pred EcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy9598 671 WSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749 (1915)
Q Consensus 671 fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vw 749 (1915)
|+|++. +|++|+.||.|++||+.++..... .....+...|.++.| +++.+|++++. ||.|++|
T Consensus 298 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~v~~~~~-~~~~~l~s~~~-d~~v~iw 361 (420)
T 3vl1_A 298 VDGNNANYIYAGYENGMLAQWDLRSPECPVG--------------EFLINEGTPINNVYF-AAGALFVSSGF-DTSIKLD 361 (420)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSE--------------EEEESTTSCEEEEEE-ETTEEEEEETT-TEEEEEE
T ss_pred EeCCCCCEEEEEeCCCeEEEEEcCCCcCchh--------------hhhccCCCCceEEEe-CCCCEEEEecC-CccEEEE
Confidence 999999 999999999999999987652110 001124567888865 47788888887 9999999
Q ss_pred ECCCC---------ceEEEeeCCCCCeEEEEEccCCCC---EEEEEecCceEEEEECCC
Q psy9598 750 DAFNG---------DLVQVLKGHTNEVFVLESHPFDSR---VLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 750 D~~tg---------~~i~~l~gH~~~V~sl~~sp~dg~---~LaSgs~DG~I~IWdl~s 796 (1915)
++... .....+.+|.+.|.+++|+| ++. .|+++|.+|.+.+|++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 362 IISDPESERPAIEFETPTFLVSNDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEESCC
T ss_pred eccCCCCCccceeccCccEEccCCcceEEEEEcc-CCCCcceEEEEcCCceEEEEeccC
Confidence 98763 23345678999999999999 777 788888899999999864
No 87
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-30 Score=318.97 Aligned_cols=294 Identities=13% Similarity=0.104 Sum_probs=243.8
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc---EEEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEE
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK---LLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRI 544 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~---~~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrV 544 (1915)
.....+|.+.|+|++|+|++.+|++|+.||.|+||++.++. ....+.+|...|++++|++++. +|++|+.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456999999999999999999999999999999998887 3455668999999999999999 9999999999999
Q ss_pred EEC-CCCceEEEeec--CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc---------CccccceeccCcccccc
Q psy9598 545 WNL-QTLAPISVLVG--HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL---------DIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 545 WDl-~tg~~~~~l~~--h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~---------~~~~~~~~~~~~~~~~~ 612 (1915)
||+ .++.. ..+.+ |...|++++|+| . .+|++++.||.|++||+.+ +..+..+
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------- 147 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-D----DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---------- 147 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-T----TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----------
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-C----CEEEEEcCCCeEEEEcccccccccccccCCeeeEE----------
Confidence 999 87754 77888 999999999998 5 7999999999999999986 3322211
Q ss_pred ccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEE
Q psy9598 613 RIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~DG~I~IWD 691 (1915)
.+...|.+++|++++ |++|+.+|.|++||+..............|...|.+++|+| ++.+|++|+.||.|+||+
T Consensus 148 ---~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 148 ---KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp ---SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred ---eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 255789999999987 99999999999999964122223334567889999999999 999999999999999999
Q ss_pred ccCC------ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC-C
Q psy9598 692 YKCS------QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH-T 764 (1915)
Q Consensus 692 l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH-~ 764 (1915)
+... ........ .........+...|.+++|+|++.+|++++. ||.|++||+.+++++..+.+| .
T Consensus 223 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~ 294 (342)
T 1yfq_A 223 FDDQGDDYNSSKRFAFRC-------HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DGIISCWNLQTRKKIKNFAKFNE 294 (342)
T ss_dssp CCTTCCSTTCTTCEEEEC-------CCCCTTCCSSCCCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEECCCCSS
T ss_pred EcCCCcccccccceeeec-------ccccccccccceeEEEEEEcCCCCEEEEecC-CceEEEEcCccHhHhhhhhcccC
Confidence 9875 32211110 0000011235568999999999999999998 999999999999999999998 9
Q ss_pred CCeEEEEEccCCCCEEEEEecCce-EEEEEC
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGL-IIIWDI 794 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~-I~IWdl 794 (1915)
..|++++ | ++.+|++|+.||+ .+.|..
T Consensus 295 ~~v~~~~--~-~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 295 DSVVKIA--C-SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SEEEEEE--E-CSSEEEEEEECTHHHHCSSS
T ss_pred CCceEec--C-CCCeEEEEecCCcccccccc
Confidence 9999999 7 8999999999998 555553
No 88
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.8e-31 Score=334.41 Aligned_cols=281 Identities=22% Similarity=0.427 Sum_probs=242.3
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg 550 (1915)
...+|...|+|++| ++.+|++|+.||.|+|||+.+++.+..+.+|.+.|++++| ++.+|++|+.||+|+|||+.++
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 34578889999988 6999999999999999999999999999999999999999 7889999999999999999999
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
..+..+.+|...|.+++|++ .+|++|+.||+|++||+.++..... ...+.+|...|.+++| ++
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~---------~~~~~~~~~~v~~~~~--~~ 266 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN------GMMVTCSKDRSIAVWDMASPTDITL---------RRVLVGHRAAVNVVDF--DD 266 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT------TEEEEEETTSCEEEEECSSSSCCEE---------EEEECCCSSCEEEEEE--ET
T ss_pred cEEEEEcCCCCcEEEEEEcC------CEEEEeeCCCcEEEEeCCCCCCcee---------eeEecCCCCcEEEEEe--CC
Confidence 99999999999999999976 6999999999999999987754321 1223467789999999 78
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCC
Q psy9598 631 LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPH 710 (1915)
Q Consensus 631 ~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~ 710 (1915)
.+|++|+.||.|++||+. ....+..+.+|...|.+++|+ +.+|++|+.||.|++||+.++.....
T Consensus 267 ~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~---------- 331 (435)
T 1p22_A 267 KYIVSASGDRTIKVWNTS---TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV---------- 331 (435)
T ss_dssp TEEEEEETTSEEEEEETT---TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE----------
T ss_pred CEEEEEeCCCeEEEEECC---cCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEE----------
Confidence 899999999999999994 446677888999999999994 67999999999999999998875432
Q ss_pred CccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc---------eEEEeeCCCCCeEEEEEccCCCCEEE
Q psy9598 711 TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD---------LVQVLKGHTNEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 711 ~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~---------~i~~l~gH~~~V~sl~~sp~dg~~La 781 (1915)
...|...|.+++| ++.+|++++. ||.|++||+.++. ++..+.+|.+.|++++| ++.+|+
T Consensus 332 ------~~~h~~~v~~~~~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~ 399 (435)
T 1p22_A 332 ------LEGHEELVRCIRF--DNKRIVSGAY-DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIV 399 (435)
T ss_dssp ------ECCCSSCEEEEEC--CSSEEEEEET-TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---CSSCEE
T ss_pred ------EeCCcCcEEEEEe--cCCEEEEEeC-CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---CCCEEE
Confidence 2246778999998 7889999988 9999999987766 89999999999999999 457899
Q ss_pred EEecCceEEEEECCCCcc
Q psy9598 782 SAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 782 Sgs~DG~I~IWdl~s~~~ 799 (1915)
+|+.||+|+|||+.+...
T Consensus 400 s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 400 SSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp ECCSSSEEEEEC------
T ss_pred EEeCCCEEEEEECCCCCC
Confidence 999999999999987665
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.98 E-value=7.2e-31 Score=322.46 Aligned_cols=302 Identities=16% Similarity=0.212 Sum_probs=238.4
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEE-EEEeC---CCcEEEEECCCCceEEEe-ecCCCCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 511 LATLRGCSGEISDIAIDNRNILL-AAGTV---DKTIRIWNLQTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg~~L-aSgs~---DgtIrVWDl~tg~~~~~l-~~h~~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
...+.+|...|++|+|+|++..| ++|+. |+.|+|||+.++...... .+|...|++++|+|.. .++.+|++|+.|
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~d 89 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATS-LQQRYLATGDFG 89 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCC-TTTCCEEEEETT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCC-CCCceEEEecCC
Confidence 34567899999999999998655 56665 899999999998876543 3799999999999952 125899999999
Q ss_pred CeEEEEecccCc-cccceeccCccccccccCCCCCceEEEE------ECCCCcEEEEEeCCCeEEEEEecCCCCCceeEE
Q psy9598 586 GCIGFWKYKLDI-DISKTVFHEPVMFNERIRPGNAHILCSS------FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 586 gtI~iWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~l~------fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~ 658 (1915)
|.|++||+.++. .+ ..+..|...|.++. |++++.+|++|+.||.|++||+..... .+..
T Consensus 90 g~i~iwd~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~ 155 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPV------------YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--PVAN 155 (357)
T ss_dssp SCEEEECTTSCSSCS------------EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS--CSEE
T ss_pred CeEEEEeCCCCCccE------------EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC--ccee
Confidence 999999998775 22 12335778899995 578999999999999999999954332 3444
Q ss_pred eccCCC----CeeEEE----EcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC
Q psy9598 659 VEEHSD----KVDSIQ----WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 730 (1915)
Q Consensus 659 l~~h~~----~V~sl~----fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s 730 (1915)
+..|.+ .|.+++ |++++.+|++|+.||.|++||+.++..... ..+...|.+++|+
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------------~~~~~~v~~~~~~ 218 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-----------------TNIKNGVCSLEFD 218 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-----------------EECSSCEEEEEES
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-----------------cCCCCceEEEEcC
Confidence 544444 899998 788999999999999999999998774321 2356789999999
Q ss_pred C---CCCEEEEEEecCCeEEEEECCCCceEEEee-----CCCCCeEEEEEccCCCC-EEEEEecCceEEEEECCCCcccc
Q psy9598 731 A---SDRWVITAINFNFQIKIWDAFNGDLVQVLK-----GHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSSKQRG 801 (1915)
Q Consensus 731 p---dg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-----gH~~~V~sl~~sp~dg~-~LaSgs~DG~I~IWdl~s~~~~~ 801 (1915)
| ++.+|++++. ||.|++||+.++..+..+. +|...|++++|+| ++. +|++|+.||.|+|||+..+....
T Consensus 219 ~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~ 296 (357)
T 3i2n_A 219 RKDISMNKLVATSL-EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRS 296 (357)
T ss_dssp CSSSSCCEEEEEES-TTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC-
T ss_pred CCCCCCCEEEEECC-CCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccc
Confidence 9 9999999988 9999999998876655444 9999999999999 777 89999999999999998754410
Q ss_pred --------------ceeeeeeecCCCCcceEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcc
Q psy9598 802 --------------YKWFHNIVEGQGEGALFDGKWSPDGTTCA-LTDSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 802 --------------~~~~~~~~~~~~~~~V~~vafSpdg~~La-sg~~dG~I~Iwdl~s~~~ 848 (1915)
...+. ....|.+.|.+++|+|+|.+|+ +++.||.|+||++.+...
T Consensus 297 ~~~~~g~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 297 KKDSEGIEMGVAGSVSLLQ--NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp -CCTTSCCCCCCCEEEEEE--EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cccCCCCccccccccceee--ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 01111 1124568999999999999998 799999999999987543
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=2.3e-31 Score=323.83 Aligned_cols=258 Identities=21% Similarity=0.302 Sum_probs=208.7
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeC--CCCEEEEEeCCCcEEEEE
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDN--RNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafsp--dg~~LaSgs~DgtIrVWD 546 (1915)
.+.||.+.|++|+|+|+|++||||+.|++|+|||+.++. ++.++.+|.+.|++|+|++ ++.+|+||+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 567999999999999999999999999999999998875 5678999999999999986 489999999999999999
Q ss_pred CCCC--ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 547 LQTL--APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 547 l~tg--~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
+.++ ..+..+.+|...|++++|+|.. .+.+|++|+.||+|++||+..+.... ....+..|...|.++
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~--~g~~lasgs~D~~i~lwd~~~~~~~~---------~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHD--YGLILACGSSDGAISLLTYTGEGQWE---------VKKINNAHTIGCNAV 156 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTT--TCSCEEEECSSSCEEEEEECSSSCEE---------ECCBTTSSSSCBCCC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCC--CCcEEEEEcCCCCEEEEecCCCCCcc---------eeeeeccccCCcceE
Confidence 9987 4677888999999999999953 35899999999999999997653110 011233567788999
Q ss_pred EECCC-----------------CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCC----CEEEEEeC
Q psy9598 625 SFSPG-----------------GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH----LRFVSGSR 683 (1915)
Q Consensus 625 ~fspd-----------------g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg----~~L~sgs~ 683 (1915)
+|+|+ +.+|++|+.|+.|+|||+........+..+.+|...|.+++|+|++ .+|++|+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence 99997 4689999999999999995333334566788999999999999986 78999999
Q ss_pred CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 684 DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 684 DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
||+|+||++.+..... ........+...|.+++|+|++.+|++++. |+.|+||+..
T Consensus 237 D~~v~iw~~~~~~~~~------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~-D~~v~lw~~~ 292 (316)
T 3bg1_A 237 DGRVFIWTCDDASSNT------------WSPKLLHKFNDVVWHVSWSITANILAVSGG-DNKVTLWKES 292 (316)
T ss_dssp TCEEEEEECSSTTCCC------------CBCCEEEECSSCEEEEEECTTTCCEEEEES-SSCEEEEEEC
T ss_pred CCeEEEEEccCccccc------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcC-CCeEEEEEEC
Confidence 9999999987632000 000011235678999999999999999998 9999999975
No 91
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=9e-31 Score=324.13 Aligned_cols=264 Identities=22% Similarity=0.300 Sum_probs=223.1
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC--CCcEEEEEeCCCCCEEEEEEeCC--CCEEEEEeCCCcEEE
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR--DGKLLATLRGCSGEISDIAIDNR--NILLAAGTVDKTIRI 544 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~--tg~~~~~l~gH~~~I~~Lafspd--g~~LaSgs~DgtIrV 544 (1915)
...+.||.+.|+|++|+|+|.+||+|+.||.|+||++. ++..+..+.+|.+.|++|+|+++ +.+|++|+.||.|+|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 45678999999999999999999999999999999998 66788899999999999999987 999999999999999
Q ss_pred EECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 545 WNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 545 WDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
||+.++. .+..+.+|...|++++|+|.. .+.+|++++.||.|++||+.......... +..|...|.
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----------~~~~~~~v~ 151 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHE--YGPLLLVASSDGKVSVVEFKENGTTSPII----------IDAHAIGVN 151 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETTSEEEEEECCTTSCCCEEE----------EECCTTCEE
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCC--CCCEEEEecCCCcEEEEecCCCCceeeEE----------ecCCCCceE
Confidence 9999987 778888999999999999951 15899999999999999998774332222 235678899
Q ss_pred EEEECC-------------CCcEEEEEeCCCeEEEEEecCCCC-CceeEEeccCCCCeeEEEEcCC---CCEEEEEeCCC
Q psy9598 623 CSSFSP-------------GGLFLATGSGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHS---HLRFVSGSRDG 685 (1915)
Q Consensus 623 ~l~fsp-------------dg~~Lasgs~Dg~I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fspd---g~~L~sgs~DG 685 (1915)
+++|+| ++.+|++|+.||.|++||+..... ...+..+.+|...|.+++|+|+ +.+|++++.||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg 231 (379)
T 3jrp_A 152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231 (379)
T ss_dssp EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence 999999 699999999999999999964432 2345578899999999999999 89999999999
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL 756 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~ 756 (1915)
.|+|||+.++..... ........+...|++++|+|++.+|++++. ||.|++|++..+..
T Consensus 232 ~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 232 TCIIWTQDNEQGPWK-----------KTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGK 290 (379)
T ss_dssp CEEEEEESSTTSCCE-----------EEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEEETTE
T ss_pred EEEEEeCCCCCccce-----------eeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCCCCCc
Confidence 999999987641110 011122346778999999999999999998 99999999875543
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.98 E-value=1.5e-31 Score=332.66 Aligned_cols=313 Identities=13% Similarity=0.082 Sum_probs=234.0
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEE
Q psy9598 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL--APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 591 (1915)
Q Consensus 514 l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg--~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iW 591 (1915)
+..|.+.|++++|+|++.+||+|+.|+.|+|||+.++ .++..+.+|.+.|++++|+|+ +.+|++|+.||+|++|
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK----SNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT----TCCEEEEETTSSEEEC
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC----CCEEEEEeCCCeEEEE
Confidence 4457789999999999999999999999999999988 778889999999999999994 4899999999999999
Q ss_pred ecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc-CCCCeeEEE
Q psy9598 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-HSDKVDSIQ 670 (1915)
Q Consensus 592 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-h~~~V~sl~ 670 (1915)
|+.++.... ....+..|...|.+++|+|++.+|++|+.||.|++||+...........+.+ |...|.+++
T Consensus 83 d~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 83 EKRPDGTWK---------QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp ------CCC---------CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred EcCCCCcee---------eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence 998875111 1122345778999999999999999999999999999965443334566777 999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceEEeeecc--cccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM--NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
|+|++.+|++|+.||.|++||+............ ....+........ .|...|.+++|+|++.+|++++. ||.|++
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i 231 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH-DSSVTI 231 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET-TTEEC-
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC-CCcEEE
Confidence 9999999999999999999999754321100000 0000001111222 68889999999999999999998 999999
Q ss_pred EECCCCce----EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccc----------------------
Q psy9598 749 WDAFNGDL----VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGY---------------------- 802 (1915)
Q Consensus 749 wD~~tg~~----i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~---------------------- 802 (1915)
||+.++.. +..+.+|...|++++|+| ++.+|++|+.++.+ +|+.........
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGR 309 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEE-TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCC
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccc
Confidence 99999988 888999999999999999 89999988877666 666642210000
Q ss_pred ------------eeeee-----------eecCCCCcceEEEEEcCC-CC---EEEEEeCCCeEEEEeC
Q psy9598 803 ------------KWFHN-----------IVEGQGEGALFDGKWSPD-GT---TCALTDSYGHLLVYGL 843 (1915)
Q Consensus 803 ------------~~~~~-----------~~~~~~~~~V~~vafSpd-g~---~Lasg~~dG~I~Iwdl 843 (1915)
..|.. .+...|.+.|+++++.+. +. .|++|+.||.|+||++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 310 EEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00100 011236788999997664 33 6999999999999986
No 93
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.97 E-value=3e-32 Score=318.31 Aligned_cols=185 Identities=24% Similarity=0.404 Sum_probs=155.1
Q ss_pred ChHHHHhhcccccCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhccccCCCCCc
Q psy9598 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSE 80 (1915)
Q Consensus 1 L~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~p~s~I~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1915)
|+||++||+++.|.++++|++||+|||+||++||+++|.|+.+|+.|.+++.+.+++.... ......
T Consensus 57 L~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~-----~~~~ek-------- 123 (265)
T 3uv5_A 57 LQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDK-----LARLEK-------- 123 (265)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHH-----HHHHHH--------
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhh-----hhhhhh--------
Confidence 6899999999999999999999999999999999999999999999999999877763210 000000
Q ss_pred ccccccccccccccCCCCcchhhhhhhhccccCCchhHHHHHHHHHHH-HhcCCCCCCCCCCCCCCCCCCccccCCCcCC
Q psy9598 81 EEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLET-LWVCPDSEPFRKPVDKLDHPDYDKIVIAPMD 159 (1915)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~-l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmd 159 (1915)
...|..... ....+...|..++.. |++++.++||++|||...+||||+||++|||
T Consensus 124 ------------~i~p~~dd~------------~~~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmd 179 (265)
T 3uv5_A 124 ------------AINPLLDDD------------DQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMD 179 (265)
T ss_dssp ------------HHSTTTTCH------------HHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCC
T ss_pred ------------hhhhccccc------------hhhHHHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCccc
Confidence 000000000 012345556666654 8889999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 160 LGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 160 l~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
|+||++||.+|.|.++++|..||+|||.||++||+++ |.||.+|..|+++|++.|+++...+.
T Consensus 180 l~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~-s~~~~~A~~l~~~~~~~~~~~~~~~~ 242 (265)
T 3uv5_A 180 LETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE-SQYTKTAQEIVNVCYQTLTEYDEHLT 242 (265)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999977 99999999999999999999987764
No 94
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.4e-30 Score=323.87 Aligned_cols=287 Identities=13% Similarity=0.081 Sum_probs=222.1
Q ss_pred CCcEEEEEEcCCCCEEEEEECCC-------cEEEEECCCCc----------EEEEEeCCCCCEEEEEEeCCCCEEEEEe-
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDL-------LIKLWRARDGK----------LLATLRGCSGEISDIAIDNRNILLAAGT- 537 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg-------~I~IWd~~tg~----------~~~~l~gH~~~I~~Lafspdg~~LaSgs- 537 (1915)
..+|+||+|+|+|++||+||.|. .|+||++..+. ....|.+|...|++++++. ..+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--GIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--TEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--CEEEEEEC
Confidence 36899999999999999998654 49999987653 1235678999999888764 4666654
Q ss_pred ----------CCCcEEEEECCCCceEE----Ee-----ecCCCCeEEEEeccCccCCCcEEEE--EeCCCeEEEEecccC
Q psy9598 538 ----------VDKTIRIWNLQTLAPIS----VL-----VGHQGIITGVNFCPLEVNGFNYLAS--TSTDGCIGFWKYKLD 596 (1915)
Q Consensus 538 ----------~DgtIrVWDl~tg~~~~----~l-----~~h~~~V~sl~fsp~~~~d~~~L~s--gs~DgtI~iWDl~~~ 596 (1915)
.|++|++|++.++.... .. ..+...+.+++|+|+ +.+|++ ++.|++|+|||+.++
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD----g~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE----GTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT----SSCEEEEESCSSCEEEEEETTTT
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC----CCEEEEEECCCCCEEEEeECCCC
Confidence 47789999987653221 11 124456899999995 477654 457899999999887
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL 676 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~ 676 (1915)
..+..+ .|...|.+++|+|+|.+|++++.++ +.+|+... ..........+|...|.+++|+|++.
T Consensus 168 ~~~~~~-------------~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~-~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 168 TEKFEI-------------ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVT-GSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp EEEEEE-------------ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTT-CCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred cEEEEe-------------CCCCceEEEEEccCCceEEecccee-EEEEEecc-CcceeeeecCCCCCCEEEEEEcCCCC
Confidence 643332 1346799999999999999998665 55555422 22222234567889999999999999
Q ss_pred EEEEEeCCC----cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 677 RFVSGSRDG----TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 677 ~L~sgs~DG----~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
+|++++.|+ .+++|++.......... .....+...|++++|+|+|++|++|+. |++|+|||+.
T Consensus 233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~------------~~~~~~~~~V~~~~~Spdg~~lasgs~-D~~V~iwd~~ 299 (365)
T 4h5i_A 233 VLIAASLKKGKGIVLTKISIKSGNTSVLRS------------KQVTNRFKGITSMDVDMKGELAVLASN-DNSIALVKLK 299 (365)
T ss_dssp EEEEEEESSSCCEEEEEEEEETTEEEEEEE------------EEEESSCSCEEEEEECTTSCEEEEEET-TSCEEEEETT
T ss_pred EEEEEecCCcceeEEeecccccceecceee------------eeecCCCCCeEeEEECCCCCceEEEcC-CCEEEEEECC
Confidence 999999887 68889887665332111 123346778999999999999999998 9999999999
Q ss_pred CCceEEEe-eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCC
Q psy9598 753 NGDLVQVL-KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 753 tg~~i~~l-~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
+++++..+ .+|...|++|+|+| ++.+|||||.|++|+||++...
T Consensus 300 ~~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 300 DLSMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTEEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred CCcEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 99999875 79999999999999 9999999999999999999654
No 95
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3.9e-30 Score=316.73 Aligned_cols=311 Identities=12% Similarity=0.197 Sum_probs=244.3
Q ss_pred cCCceeeeEEecCCCCcEEEEEEcCC---CCEEEEEECCCcEEEEECCC-CcEE-EEEeCCCCCEEEEEEeCCCCEEEEE
Q psy9598 462 KYSNLRQHYVNLGHLSAVFCVLFDKL---GEVIVTGADDLLIKLWRARD-GKLL-ATLRGCSGEISDIAIDNRNILLAAG 536 (1915)
Q Consensus 462 ~~~~~~~~~~l~gH~~~V~~vafspd---g~~LaTGs~Dg~I~IWd~~t-g~~~-~~l~gH~~~I~~Lafspdg~~LaSg 536 (1915)
....+.....+.+|.+.|+||+|+|+ |.+|++|+.||.|+|||+.+ +..+ ..+.+|.+.|++|+|+|++.+|++|
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 34456667788999999999999999 69999999999999999997 5555 7889999999999999999999999
Q ss_pred eCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 537 TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 537 s~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
+.||.|+|||+.++..+. +.+|...|++++|++.. ++.+|++|+.||.|++||+.++..+..+..+
T Consensus 105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------- 170 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP--NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP----------- 170 (368)
T ss_dssp ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS--SCEEEEEEETTSEEEEECSSCSSCSEEEECS-----------
T ss_pred cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC--CCCEEEEccCCCcEEEEECCCCcEEEEEecC-----------
Confidence 999999999999988766 56799999999994322 5589999999999999999988655444332
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCE----EEEEeCCCcEEEEEc
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR----FVSGSRDGTALIWYY 692 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~----L~sgs~DG~I~IWDl 692 (1915)
..+.++.+.+ ..+++++.++.+.+|++..... ........+...+.++++.+++.. |++|+.||.|++|++
T Consensus 171 --~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~ 245 (368)
T 3mmy_A 171 --ERCYCADVIY--PMAVVATAERGLIVYQLENQPS-EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI 245 (368)
T ss_dssp --SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCE-EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES
T ss_pred --CCceEEEecC--CeeEEEeCCCcEEEEEeccccc-hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec
Confidence 4566666664 4788999999999999954321 111122334556677777665554 999999999999999
Q ss_pred cCCce---EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEE
Q psy9598 693 KCSQW---RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 769 (1915)
Q Consensus 693 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~s 769 (1915)
..... ........ ..........+...|++++|+|++.+|++++. ||.|+|||+.+++++..+.+|...|++
T Consensus 246 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~ 320 (368)
T 3mmy_A 246 NPPNPAKDNFTFKCHR----SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DGRFSFWDKDARTKLKTSEQLDQPISA 320 (368)
T ss_dssp SCSCHHHHSEEEECSE----EC----CCCEEECCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEECCCCSSCEEE
T ss_pred CCCCccccceeeeeee----cccccccccccccceEEEEEecCCCEEEEEcc-CCeEEEEECCCCcEEEEecCCCCCceE
Confidence 87631 11110000 00001112234457999999999999999998 999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEecCceEEEEECCCC
Q psy9598 770 LESHPFDSRVLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~DG~I~IWdl~s~ 797 (1915)
++|+| ++.+|++|+.|+..+.|++...
T Consensus 321 ~~~s~-~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 321 CCFNH-NGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEECT-TSSCEEEEECCCSTTCGGGCCT
T ss_pred EEECC-CCCeEEEEecccccccccccCC
Confidence 99999 9999999999987766665543
No 96
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.7e-29 Score=314.02 Aligned_cols=293 Identities=13% Similarity=0.069 Sum_probs=225.3
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCC-------cEEEEECCCCce----------EEEeecCCCCeEEEEeccCccCCCcEEE
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDK-------TIRIWNLQTLAP----------ISVLVGHQGIITGVNFCPLEVNGFNYLA 580 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~Dg-------tIrVWDl~tg~~----------~~~l~~h~~~V~sl~fsp~~~~d~~~L~ 580 (1915)
..+|+|++|+|++++||+|+.+. .|+||++..+.. ...+.+|...|.++++.. ..++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~------~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK------GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET------TEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC------CEEE
Confidence 45899999999999999998643 599999875432 234678888999998865 4555
Q ss_pred EE-----------eCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEe
Q psy9598 581 ST-----------STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKM 647 (1915)
Q Consensus 581 sg-----------s~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--~Dg~I~IwDl 647 (1915)
+| +.|++|++|++............ . .......+...+.+++|||||++|++++ .|++|+|||+
T Consensus 88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~ 164 (365)
T 4h5i_A 88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS--V-DFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDP 164 (365)
T ss_dssp EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE--E-CSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEET
T ss_pred EEECCCccEEEEecCCCcEEEEEecCCCceEEEeee--e-ceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeEC
Confidence 54 45788999998765432211111 0 0111223446789999999999987544 6899999998
Q ss_pred cCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEE
Q psy9598 648 DGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 648 ~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 727 (1915)
. ....+..+ .|.+.|.+|+|+|+|.+|++++.+ .+.+|+..++...... ....+...|.++
T Consensus 165 ~---~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~v~~v 225 (365)
T 4h5i_A 165 S---DLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARK--------------TDFDKNWSLSKI 225 (365)
T ss_dssp T---TTEEEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEE--------------CCCCTTEEEEEE
T ss_pred C---CCcEEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeee--------------ecCCCCCCEEEE
Confidence 4 34455555 478889999999999999999855 5666766666543211 123467789999
Q ss_pred EECCCCCEEEEEEecCC----eEEEEECCCCce----EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 728 AWDASDRWVITAINFNF----QIKIWDAFNGDL----VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 728 a~spdg~~L~t~s~~Dg----~I~vwD~~tg~~----i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+|+|++.++++++. ++ .+++|++..+.. ...+.+|...|++|+|+| ++.+||+|+.||+|+|||+.++++
T Consensus 226 ~fspdg~~l~~~s~-d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 226 NFIADDTVLIAASL-KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSM 303 (365)
T ss_dssp EEEETTEEEEEEEE-SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEE
T ss_pred EEcCCCCEEEEEec-CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcE
Confidence 99999999999987 66 688999876643 456789999999999999 999999999999999999999887
Q ss_pred ccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 800 RGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 800 ~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+..+. ..|.+.|++++|||||++||+|+.|++|+||++...
T Consensus 304 --~~~~~----~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 304 --SKIFK----QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp --EEEET----TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred --EEEec----CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 55432 356789999999999999999999999999999643
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=5.9e-30 Score=325.46 Aligned_cols=305 Identities=15% Similarity=0.216 Sum_probs=229.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc-----------EEEEEeCCC------------CCEEEEEEeCCC
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-----------LLATLRGCS------------GEISDIAIDNRN 530 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~-----------~~~~l~gH~------------~~I~~Lafspdg 530 (1915)
.|.+.|+||+|+|+|.+||+|+.||.|+||++.++. ++..+.+|. +.|++|+|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 468999999999999999999999999999999887 688899998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEECCCCceE---------------------------------------EE-eecCCCCeEEEEe
Q psy9598 531 --ILLAAGTVDKTIRIWNLQTLAPI---------------------------------------SV-LVGHQGIITGVNF 568 (1915)
Q Consensus 531 --~~LaSgs~DgtIrVWDl~tg~~~---------------------------------------~~-l~~h~~~V~sl~f 568 (1915)
.+|++|+.|++|+|||+.++... .. +.+|...|++++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 89999999999999999764432 12 3689999999999
Q ss_pred ccCccCCCcEEEEEeCCCeEEEEecccCc-cccceeccCccccccccCCCCCceEEEEECCCC-cEEEEEeCCCeEEEEE
Q psy9598 569 CPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYK 646 (1915)
Q Consensus 569 sp~~~~d~~~L~sgs~DgtI~iWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs~Dg~I~IwD 646 (1915)
+|+ +.+|++| .||+|++||+.... .+..+... ...+..|...|.+++|+|++ .+|++|+.||.|++||
T Consensus 186 ~~~----~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 186 NSD----YETYLSA-DDLRINLWHLEITDRSFNIVDIK-----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp CTT----SSEEEEE-CSSEEEEEETTEEEEEEEEEECC-----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred cCC----CCEEEEe-CCCeEEEEECCCCCceeeeeecc-----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence 994 4899998 79999999998432 22111111 11244677899999999998 9999999999999999
Q ss_pred ecCCCC-CceeEEeccCCC------------CeeEEEEcCCCCEEEEEeCCCcEEEEEccC-CceEEeeecccccCCCCc
Q psy9598 647 MDGVDS-PLGILEVEEHSD------------KVDSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTK 712 (1915)
Q Consensus 647 l~~~~~-~~~i~~l~~h~~------------~V~sl~fspdg~~L~sgs~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~ 712 (1915)
+..... ...+..+.+|.. .|.+++|+|+|.+|++++. |.|+|||+.+ +............. ...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~-~~l 333 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR-SKL 333 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT-TTH
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc-ccc
Confidence 954331 112466777775 9999999999999999999 9999999986 44222111000000 000
Q ss_pred cccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC-----------------------------
Q psy9598 713 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH----------------------------- 763 (1915)
Q Consensus 713 ~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH----------------------------- 763 (1915)
...........+..++|+|++.+|++++. ||.|+|||+.+++.+. +.+|
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSY-NNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVD 411 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECS-TTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred cccccccccccceEEEECCCCCEEEEecc-CCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccc
Confidence 00000001112345999999999999988 9999999999988763 3322
Q ss_pred ----CCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 764 ----TNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 764 ----~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
...|..++|+| ++.+||+|+.++ ++||..
T Consensus 412 ~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 412 SLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp GCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred ccccCCceeEEEECC-CCCEEEEEecce-eeeecc
Confidence 35688999999 999999998775 778764
No 98
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=1e-29 Score=306.31 Aligned_cols=258 Identities=22% Similarity=0.303 Sum_probs=211.5
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC--CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT--LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t--g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
..+.+|.+.|++++|+++|++||+|+.|++|+|||+.+ +.++.++.+|.+.|++++|++.. ++.+|++|+.||+|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~--~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVM 80 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG--GCSEEEEEETTTEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC--cCCEEEEEcCCCEEE
Confidence 46789999999999999999999999999999999974 46788999999999999998632 358999999999999
Q ss_pred EEecccCccccceeccCccccccccCCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 590 iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
+||+.++..... ..+..|...|.+++|+|+ |.+|++|+.||.|++||+..... .....+.+|...|.
T Consensus 81 iWd~~~~~~~~~----------~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~-~~~~~~~~h~~~v~ 149 (297)
T 2pm7_B 81 IWKEENGRWSQI----------AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVN 149 (297)
T ss_dssp EEEBSSSCBCCC----------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC-BCCEEEECCSSCEE
T ss_pred EEEcCCCceEEE----------EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc-eeeeeeecccCccc
Confidence 999987632111 122356788999999997 88999999999999999954322 22356789999999
Q ss_pred EEEEcCC-------------CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC-
Q psy9598 668 SIQWSHS-------------HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD- 733 (1915)
Q Consensus 668 sl~fspd-------------g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg- 733 (1915)
+++|+|+ +.+|++|+.||+|+|||+.++..... ......+|...|.+++|+|++
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~------------~~~~l~~H~~~V~~v~~sp~~~ 217 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------LESTLEGHSDWVRDVAWSPTVL 217 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE------------EEEEECCCSSCEEEEEECCCCS
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE------------EEEEecCCCCceEEEEECCCCC
Confidence 9999997 56999999999999999987652110 011234578899999999995
Q ss_pred --CEEEEEEecCCeEEEEECCCCc---eEEEe--eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 734 --RWVITAINFNFQIKIWDAFNGD---LVQVL--KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 734 --~~L~t~s~~Dg~I~vwD~~tg~---~i~~l--~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
.+|++++. |++|+|||+.++. ....+ .+|...|++++|+| ++.+|++|+.||+|+||+...
T Consensus 218 ~~~~las~s~-D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 218 LRSYMASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSEEEEEEET-TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEECT
T ss_pred CceEEEEEEC-CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEECC
Confidence 78888887 9999999997743 22333 57888999999999 999999999999999999863
No 99
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.5e-29 Score=316.32 Aligned_cols=297 Identities=19% Similarity=0.282 Sum_probs=238.5
Q ss_pred EEEEeCCCCC--EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeec-CCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 511 LATLRGCSGE--ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 511 ~~~l~gH~~~--I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
+....+|... +.+++|++ ..|++++.|+.|+|||+.++.....+.. |...|++++|+|+ +.+|++|+.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~----~~~l~~~~~dg~ 157 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD----GSFLSVGLGNGL 157 (401)
T ss_dssp EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT----SSEEEEEETTSC
T ss_pred eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC----CCEEEEECCCCe
Confidence 3344566655 45566665 4578888999999999999998887776 8899999999994 589999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCee
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 667 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~ 667 (1915)
|++||+.++..+.. +..|...|.+++| ++.+|++|+.||.|++||+.. ....+..+.+|.+.|.
T Consensus 158 i~iwd~~~~~~~~~------------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~ 221 (401)
T 4aez_A 158 VDIYDVESQTKLRT------------MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRI--ANHQIGTLQGHSSEVC 221 (401)
T ss_dssp EEEEETTTCCEEEE------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS--SSCEEEEEECCSSCEE
T ss_pred EEEEECcCCeEEEE------------ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEeccc--CcceeeEEcCCCCCee
Confidence 99999987754332 2356789999999 567999999999999999953 2345677889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe--cCCe
Q psy9598 668 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN--FNFQ 745 (1915)
Q Consensus 668 sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~--~Dg~ 745 (1915)
+++|+|++.+|++|+.||.|++||+.++..... ...+...|.+++|+|++..++++++ .|+.
T Consensus 222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~----------------~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT----------------KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCSSEEEE----------------ECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE----------------ecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence 999999999999999999999999998764432 2236778999999998765555442 4999
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEE--ecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 746 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA--GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSg--s~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
|++||+.++.++..+. |...|.+++|+| ++.+|+++ +.||.|+||++.++.. ...+. ...|.+.|.+++|+
T Consensus 286 i~i~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~--~~~~~---~~~h~~~v~~~~~s 358 (401)
T 4aez_A 286 IHFWNAATGARVNTVD-AGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGL--TKQVD---IPAHDTRVLYSALS 358 (401)
T ss_dssp EEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEE--EEEEE---EECCSSCCCEEEEC
T ss_pred EEEEECCCCCEEEEEe-CCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccc--eeEEE---ecCCCCCEEEEEEC
Confidence 9999999999999886 567899999999 88999885 4899999999988765 22221 12466889999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCcccccC
Q psy9598 824 PDGTTCALTDSYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 824 pdg~~Lasg~~dG~I~Iwdl~s~~~~~~l 852 (1915)
|+|.+|++++.||.|+||++.+++.+...
T Consensus 359 ~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 359 PDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp TTSSEEEEECTTSEEEEEECCC-------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 99999999999999999999988766543
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=5.5e-30 Score=325.76 Aligned_cols=313 Identities=15% Similarity=0.205 Sum_probs=233.9
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-----------eEEEeecCC------------CCeEEEEeccCcc
Q psy9598 517 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA-----------PISVLVGHQ------------GIITGVNFCPLEV 573 (1915)
Q Consensus 517 H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~-----------~~~~l~~h~------------~~V~sl~fsp~~~ 573 (1915)
|.+.|++|+|+|+|.+||+|+.||.|+|||+.++. ++..+.+|. +.|++++|+|.+
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~- 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK- 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC-
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC-
Confidence 57899999999999999999999999999999877 578899998 889999999943
Q ss_pred CCCcEEEEEeCCCeEEEEecccCccccc-------------------eeccC--c-------cccccccCCCCCceEEEE
Q psy9598 574 NGFNYLASTSTDGCIGFWKYKLDIDISK-------------------TVFHE--P-------VMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 574 ~d~~~L~sgs~DgtI~iWDl~~~~~~~~-------------------~~~~~--~-------~~~~~~~~~~~~~V~~l~ 625 (1915)
+..+|++++.||+|++||+.++..... +.+.. + ........+|...|.+++
T Consensus 106 -~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 106 -NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp -SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred -CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 226899999999999999976432100 00000 0 000011357889999999
Q ss_pred ECCCCcEEEEEeCCCeEEEEEecCCCCCceeE-----EeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEEccCCce--
Q psy9598 626 FSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL-----EVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCSQW-- 697 (1915)
Q Consensus 626 fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~-----~l~~h~~~V~sl~fspdg-~~L~sgs~DG~I~IWDl~~~~~-- 697 (1915)
|+|++.+|++| .||.|+|||+........+. .+.+|...|.+++|+|++ .+|++|+.||.|++||++++..
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999998 79999999994222111111 356899999999999998 9999999999999999998763
Q ss_pred --EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-CceEEEeeCCCCC--------
Q psy9598 698 --RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDLVQVLKGHTNE-------- 766 (1915)
Q Consensus 698 --~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~~i~~l~gH~~~-------- 766 (1915)
........ ..........+...|.+++|+|+|.+|++++. +.|+|||+.+ +.++..+.+|...
T Consensus 264 ~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 264 RHSKLFEEPE----DPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp TTCEEECCC---------CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred ceeeEeccCC----CccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeeccccccccccccc
Confidence 11110000 00000111223458999999999999998764 9999999997 8999999998642
Q ss_pred -------eEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeee----------------------------ecC
Q psy9598 767 -------VFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNI----------------------------VEG 811 (1915)
Q Consensus 767 -------V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~----------------------------~~~ 811 (1915)
++.++|+| ++.+|++|+.||.|+|||+.+++. +. +... ...
T Consensus 338 ~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (447)
T 3dw8_B 338 ENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRD--IT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413 (447)
T ss_dssp HTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCE--EE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred cccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcc--ee-eeecccccccccccCCccccccCCccccccccccc
Confidence 33499999 999999999999999999998765 21 1100 011
Q ss_pred CCCcceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy9598 812 QGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 843 (1915)
Q Consensus 812 ~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl 843 (1915)
.....|.+++|+|+|.+||+++.++ +++|.-
T Consensus 414 ~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 414 DFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2235789999999999999998875 777753
No 101
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.3e-28 Score=311.87 Aligned_cols=288 Identities=18% Similarity=0.298 Sum_probs=235.6
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee--cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 597 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~ 597 (1915)
.++.|+||+++ +||+|. |++|+|||+.+|+++..+. +|...|++|+|+|+ +.+|++|+.||+|++||+.++.
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd----g~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE----GNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT----SSEEEEEETTSCEEEEETTTTE
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC----CCEEEEEECCCeEEEEEcCCCc
Confidence 46789999764 777775 9999999999999887665 67788999999994 5899999999999999998876
Q ss_pred cccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCE
Q psy9598 598 DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR 677 (1915)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~ 677 (1915)
.+.. +.+|...+.+++++ +.+|++|+.|+.+++||... ....+..+.+|...+..+.|++++.+
T Consensus 181 ~~~~------------~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~--~~~~~~~~~~h~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 181 RLRN------------MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV--AEHHVATLSGHSQEVCGLRWAPDGRH 244 (420)
T ss_dssp EEEE------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS--SSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEE------------EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc--cceeeEEecccccceeeeeecCCCCe
Confidence 4332 23566788888774 67999999999999999843 34556778899999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEE-EE-EecCCeEEEEECCCCc
Q psy9598 678 FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI-TA-INFNFQIKIWDAFNGD 755 (1915)
Q Consensus 678 L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~-t~-s~~Dg~I~vwD~~tg~ 755 (1915)
|++++.||.|+||++.++.... ........+...|.+++|+|.+..++ ++ ++.|++|++||+.++.
T Consensus 245 l~s~~~D~~v~i~~~~~~~~~~------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~ 312 (420)
T 4gga_A 245 LASGGNDNLVNVWPSAPGEGGW------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 312 (420)
T ss_dssp EEEEETTSCEEEEESSCCSSCS------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred eeeeeccccceEEeeccccccc------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence 9999999999999998765211 11122345778899999999766544 43 3358999999999999
Q ss_pred eEEEeeCCCCCeEEEEEccCCCCEEEEEe--cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe
Q psy9598 756 LVQVLKGHTNEVFVLESHPFDSRVLLSAG--HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 833 (1915)
Q Consensus 756 ~i~~l~gH~~~V~sl~~sp~dg~~LaSgs--~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~ 833 (1915)
++..+..|. .|.++.|++ ++..|++++ .||.|+|||+.++++ +..+. .|.+.|++++|+|||.+||+|+
T Consensus 313 ~~~~~~~~~-~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~~~--v~~l~-----gH~~~V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 313 CLSAVDAHS-QVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAK--VAELK-----GHTSRVLSLTMSPDGATVASAA 383 (420)
T ss_dssp EEEEEECSS-CEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCE--EEEEC-----CCSSCEEEEEECTTSSCEEEEE
T ss_pred cceeecccc-ceeeeeecC-CCCeEEEEEecCCCEEEEEECCCCcE--EEEEc-----CCCCCEEEEEEcCCCCEEEEEe
Confidence 999998765 588999999 777777664 699999999999888 66654 5778999999999999999999
Q ss_pred CCCeEEEEeCCCCcccc
Q psy9598 834 SYGHLLVYGLGGFKRPQ 850 (1915)
Q Consensus 834 ~dG~I~Iwdl~s~~~~~ 850 (1915)
.||+|+||++....+..
T Consensus 384 ~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 384 ADETLRLWRCFELDPAR 400 (420)
T ss_dssp TTTEEEEECCSCSSCC-
T ss_pred cCCeEEEEECCCCCccc
Confidence 99999999997655443
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=313.23 Aligned_cols=265 Identities=22% Similarity=0.316 Sum_probs=218.2
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC--CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~--tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
|.++..+.+|.+.|++|+|+|++.+||+|+.||.|+|||+. ++..+..+.+|.+.|++++|++.. ++.+|++|+.|
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~d 78 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYD 78 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETT
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC--CCCEEEEeccC
Confidence 45677889999999999999999999999999999999998 667788899999999999998742 35899999999
Q ss_pred CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC
Q psy9598 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 663 (1915)
Q Consensus 586 gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~ 663 (1915)
|.|++||+.++..... ..+..|...|.+++|+|+ +.+|++|+.||.|++||+.... ......+.+|.
T Consensus 79 g~v~iwd~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~ 147 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQI----------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-TTSPIIIDAHA 147 (379)
T ss_dssp SCEEEEEEETTEEEEE----------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS-CCCEEEEECCT
T ss_pred CEEEEEEcCCCceeEe----------eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC-ceeeEEecCCC
Confidence 9999999987642111 123356788999999999 9999999999999999995432 33445678899
Q ss_pred CCeeEEEEcC-------------CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC
Q psy9598 664 DKVDSIQWSH-------------SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 730 (1915)
Q Consensus 664 ~~V~sl~fsp-------------dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s 730 (1915)
..|.+++|+| ++.+|++|+.||.|++||+.++...... ......|...|.+++|+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------------ESTLEGHSDWVRDVAWS 215 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE------------EEEECCCSSCEEEEEEC
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee------------EEEEecccCcEeEEEEC
Confidence 9999999999 6999999999999999999876522111 11233577889999999
Q ss_pred CC---CCEEEEEEecCCeEEEEECCCCc---eEEEe--eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 731 AS---DRWVITAINFNFQIKIWDAFNGD---LVQVL--KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 731 pd---g~~L~t~s~~Dg~I~vwD~~tg~---~i~~l--~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
|+ +.+|++++. ||.|+|||+.++. ....+ ..|...|++++|+| ++.+|++++.||.|+||++..+..
T Consensus 216 p~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 216 PTVLLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp CCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCCCCCCeEEEEeC-CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCc
Confidence 99 888988888 9999999998864 22333 34889999999999 999999999999999999986544
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=7.3e-30 Score=310.57 Aligned_cols=256 Identities=20% Similarity=0.274 Sum_probs=205.4
Q ss_pred EEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 513 ~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
.+.+|.+.|++++|+++|++||+|+.|++|+|||+.++. ++..+.+|.+.|++++|++.. ++.+|++|+.|++|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~--~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM--YGNILASCSYDRKVII 85 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG--GSSCEEEEETTSCEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC--CCCEEEEEECCCEEEE
Confidence 467999999999999999999999999999999998875 467899999999999998631 3589999999999999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
||+.++..... ..+..|...|.+++|+|+ |.+|++|+.||.|++||+...........+.+|...|.+
T Consensus 86 Wd~~~~~~~~~----------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 86 WREENGTWEKS----------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp ECCSSSCCCEE----------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred EECCCCcceEE----------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 99987632111 123467789999999998 789999999999999999543222223456789999999
Q ss_pred EEEcCC-----------------CCEEEEEeCCCcEEEEEccCCc-eEEeeecccccCCCCccccccccccccEEEEEEC
Q psy9598 669 IQWSHS-----------------HLRFVSGSRDGTALIWYYKCSQ-WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 730 (1915)
Q Consensus 669 l~fspd-----------------g~~L~sgs~DG~I~IWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s 730 (1915)
++|+|+ +.+|++|+.||+|+|||+.... +.. .....+|...|.+++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~--------------~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE--------------EQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE--------------EECCBCCSSCEEEEECC
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccce--------------eeecccCCCceEEEEec
Confidence 999997 4689999999999999987542 111 11234578899999999
Q ss_pred CCC----CEEEEEEecCCeEEEEECCCC---c-eEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 731 ASD----RWVITAINFNFQIKIWDAFNG---D-LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 731 pdg----~~L~t~s~~Dg~I~vwD~~tg---~-~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
|++ .+|++++. |++|+||++.+. . ....+.+|...|++++|+| ++.+|++|+.||+|+||+...
T Consensus 222 p~~~~~~~~las~s~-D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQ-DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCSSCSCCEEEEEET-TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred CCCCCCCceEEEEcC-CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 987 78888888 999999998763 1 2345567899999999999 999999999999999999853
No 104
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.97 E-value=4.9e-31 Score=311.27 Aligned_cols=185 Identities=24% Similarity=0.419 Sum_probs=152.2
Q ss_pred ChHHHHhhcccccCCHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhccccCCCCCc
Q psy9598 1 LTTLRARFQNRFYRRITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSSE 80 (1915)
Q Consensus 1 L~tI~~kl~~~~Y~~~~ef~~D~~li~~Na~~yN~p~s~I~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1915)
|+||++||+++.|.++++|++||+|||+||++||+++|.|+.+|..|.+++.+.+++... .+...
T Consensus 90 L~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~--------~~~~~------- 154 (292)
T 3aad_A 90 LQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKED--------KLARL------- 154 (292)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHHHTHHHHTTTTTGGGSHH--------HHHHH-------
T ss_pred HHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhhcchh--------hhhhh-------
Confidence 689999999999999999999999999999999999999999999999998887765421 01000
Q ss_pred ccccccccccccccCCCCcchhhhhhhhccccCCchhHHHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCCccccCCCcCC
Q psy9598 81 EEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVL-ETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMD 159 (1915)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il-~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmd 159 (1915)
.+...|...... ...+...+..++ ..|++++.++||++|||...+||||+||++|||
T Consensus 155 ----------e~~i~Pl~dd~~------------~~~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~Pmd 212 (292)
T 3aad_A 155 ----------EKAINPLLDDDD------------QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMD 212 (292)
T ss_dssp ----------HHTTSSSTTCHH------------HHHHHHHHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCC
T ss_pred ----------hhccccccccch------------hHHHHHHHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCC
Confidence 000000000000 012333445544 458899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 160 LGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 160 l~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
|+||++||.++.|.++++|..||+|||.||++||+++ |.||.+|..|++.|++.++.+...+.
T Consensus 213 L~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~-s~i~~~A~~L~~~~~~~~~~~~~~l~ 275 (292)
T 3aad_A 213 LETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE-SQYTKTAQEIVNVCYQTLTEYDEHLT 275 (292)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999976 99999999999999999999887764
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=6.6e-29 Score=303.56 Aligned_cols=286 Identities=16% Similarity=0.087 Sum_probs=236.4
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc---eEEEeecCCCCeEEEEeccCccCCCc-EEEEEeCCCe
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA---PISVLVGHQGIITGVNFCPLEVNGFN-YLASTSTDGC 587 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~---~~~~l~~h~~~V~sl~fsp~~~~d~~-~L~sgs~Dgt 587 (1915)
....+|.+.|++++|+|++.+|++|+.|+.|+||++.++. ....+.+|...|++++|+|. +. +|++|+.||.
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN----TDLQIYVGTVQGE 80 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES----SSEEEEEEETTSC
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC----CCcEEEEEcCCCe
Confidence 3446899999999999999999999999999999998877 34556689999999999994 48 9999999999
Q ss_pred EEEEec-ccCccccceeccCccccccccCC--CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC------CceeEE
Q psy9598 588 IGFWKY-KLDIDISKTVFHEPVMFNERIRP--GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS------PLGILE 658 (1915)
Q Consensus 588 I~iWDl-~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~------~~~i~~ 658 (1915)
|++||+ .++.. ..+.. |...|.+++|+| +.+|++|+.||.|++||+..... ...+..
T Consensus 81 i~~wd~~~~~~~-------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 81 ILKVDLIGSPSF-------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp EEEECSSSSSSE-------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred EEEEEeccCCce-------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence 999999 76632 12234 778999999999 99999999999999999853100 122223
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC-CceEEeeecccccCCCCccccccccccccEEEEEECC-CCCEE
Q psy9598 659 VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA-SDRWV 736 (1915)
Q Consensus 659 l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp-dg~~L 736 (1915)
+. |...|.+++|++++ |++++.||.|++||+.+ +.... ......+...|.+++|+| ++.+|
T Consensus 147 ~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~--------------~~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNG--------------TIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp SS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCC--------------EEEECSCSSCEEEEEECSGGGCEE
T ss_pred Ee-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccc--------------eeeecCCCCceeEEEECCCCCCEE
Confidence 33 88999999999887 99999999999999987 44211 011223566899999999 99999
Q ss_pred EEEEecCCeEEEEECCCC------ceEEEeeCCCC---------CeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc
Q psy9598 737 ITAINFNFQIKIWDAFNG------DLVQVLKGHTN---------EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG 801 (1915)
Q Consensus 737 ~t~s~~Dg~I~vwD~~tg------~~i~~l~gH~~---------~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~ 801 (1915)
++++. ||.|++|++... ..+..+.+|.. .|++++|+| ++.+|++|+.||.|+|||+.+++.
T Consensus 210 ~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~-- 285 (342)
T 1yfq_A 210 ACSSI-DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKK-- 285 (342)
T ss_dssp EEEET-TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEE--
T ss_pred EEEec-CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhH--
Confidence 99998 999999999887 88889998865 999999999 999999999999999999998877
Q ss_pred ceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCe-EEEEe
Q psy9598 802 YKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGH-LLVYG 842 (1915)
Q Consensus 802 ~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~-I~Iwd 842 (1915)
+..+. ++|.+.|.+++ |+|.+|++++.||. ...|.
T Consensus 286 ~~~~~----~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 286 IKNFA----KFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEECC----CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred hhhhh----cccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 55443 33378899999 99999999999998 44444
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-30 Score=328.89 Aligned_cols=272 Identities=12% Similarity=0.086 Sum_probs=211.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS 554 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~ 554 (1915)
-...|.+|+|+|||++||||+.|++|+ |...++ .+.||...|.+++|+|+| .++++.+|+.... .+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~ 80 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLL 80 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEe
Confidence 357899999999999999999999999 766665 447999999999999998 4666666654322 222
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 634 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La 634 (1915)
.+ .|...|.+++|+| ++.+|++++.||+|++||..+ .+..+. +.. .-....|.+++|||+|++|+
T Consensus 81 ~~-~~~~~V~~vawSP----dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~-------~~~~~sv~svafSPDG~~LA 145 (588)
T 2j04_A 81 NS-QPVCYPRVCKPSP----IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG-------NLSSRTYHCFEWNPIESSIV 145 (588)
T ss_dssp TT-SCSCCEEEEEECS----SSSCEEEEETTSCEEEEETTE--EEEECC-CSS-------CSTTTCEEEEEECSSSSCEE
T ss_pred ec-CCCCcEEEEEECC----CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC-------ccccccEEEEEEcCCCCEEE
Confidence 22 5688999999999 459999999999999999543 111111 100 00013599999999999999
Q ss_pred EEeCCCeEEEEEecCCCC--C--ceeEEe----ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 635 TGSGDHHVRVYKMDGVDS--P--LGILEV----EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 635 sgs~Dg~I~IwDl~~~~~--~--~~i~~l----~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
+|+.||+|+|||+.+... + ..+..+ .+|.+.|.+|+|+|+| |++++.|++|++||+..+....
T Consensus 146 sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~------- 216 (588)
T 2j04_A 146 VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP------- 216 (588)
T ss_dssp EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC-------
T ss_pred EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc-------
Confidence 999999999999964321 1 134555 6788899999999999 8899999999999987765210
Q ss_pred cCCCCcccccc-ccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEE--ccCCCCEEEEE
Q psy9598 707 CLPHTKETSDE-TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES--HPFDSRVLLSA 783 (1915)
Q Consensus 707 ~~~~~~~~~~~-~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~--sp~dg~~LaSg 783 (1915)
..... ..|...|.+++|+ |..|++++ ++.|++||+.++.......+|.+.|+.++| +| ++..|+++
T Consensus 217 ------~~~tL~~~h~~~V~svaFs--g~~LASa~--~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a 285 (588)
T 2j04_A 217 ------VSRMIQNASRRKITDLKIV--DYKVVLTC--PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMS 285 (588)
T ss_dssp ------CEEEEECCCSSCCCCEEEE--TTEEEEEC--SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEEC
T ss_pred ------ceeeecccccCcEEEEEEE--CCEEEEEe--CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEE
Confidence 00001 2366789999999 68888775 699999999988875555589999999999 99 88999999
Q ss_pred ecCceEEEEECC
Q psy9598 784 GHDGLIIIWDIL 795 (1915)
Q Consensus 784 s~DG~I~IWdl~ 795 (1915)
+.||+ ++|...
T Consensus 286 ~edG~-klw~~d 296 (588)
T 2j04_A 286 NKTSY-KVLLED 296 (588)
T ss_dssp SSCEE-EEEESS
T ss_pred cCCCC-EEEeec
Confidence 99999 999975
No 107
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=3.5e-28 Score=293.59 Aligned_cols=283 Identities=18% Similarity=0.289 Sum_probs=228.6
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee--cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 521 I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
+++|+||+++ +||+|. |++|+|||+.+++++..+. +|...|++|+|+|. +++|++|+.||+|++||+.++..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~----~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE----GNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT----SSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC----CCEEEEEECCCcEEEeecCCcee
Confidence 5789999886 777765 9999999999999888775 67788999999994 58999999999999999998865
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L 678 (1915)
+.... +|...+.++++ ++..|++|+.++.+++|+... ....+..+.+|...+.++.|++++.+|
T Consensus 102 ~~~~~------------~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 102 LRNMT------------SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRV--AEHHVATLSGHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp EEEEE------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS--SSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEEec------------CccceEEEeec--CCCEEEEEecCCceEeeecCC--CceeEEEEcCccCceEEEEEcCCCCEE
Confidence 43332 44566665554 567999999999999999743 345567788999999999999999999
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEE--EEecCCeEEEEECCCCce
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT--AINFNFQIKIWDAFNGDL 756 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t--~s~~Dg~I~vwD~~tg~~ 756 (1915)
++++.||+|+|||+.+++... ........+...|.++++++++..++. ++..++.|++||...+..
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGW------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBS------------CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE
T ss_pred EEEecCcceeEEECCCCcccc------------cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc
Confidence 999999999999998765211 111223346678999999998765442 333488999999998887
Q ss_pred EEEeeCCCCCeEEEEEccCCCCEEEEEe--cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC
Q psy9598 757 VQVLKGHTNEVFVLESHPFDSRVLLSAG--HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 757 i~~l~gH~~~V~sl~~sp~dg~~LaSgs--~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~ 834 (1915)
..... |...+..+.|+| ++..+++++ .||.|+|||+.++++ +..+. .|.+.|++++|+|||.+||+|+.
T Consensus 234 ~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~--~~~l~-----gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 234 LSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAK--VAELK-----GHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCE--EEEEC-----CCSSCEEEEEECTTSSCEEEEET
T ss_pred ccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcE--EEEEc-----CCCCCEEEEEEcCCCCEEEEEec
Confidence 76654 666799999999 777666554 799999999999888 66654 57789999999999999999999
Q ss_pred CCeEEEEeCCCC
Q psy9598 835 YGHLLVYGLGGF 846 (1915)
Q Consensus 835 dG~I~Iwdl~s~ 846 (1915)
||+|+||++...
T Consensus 305 D~~v~iWd~~~~ 316 (318)
T 4ggc_A 305 DETLRLWRCFEL 316 (318)
T ss_dssp TTEEEEECCSCC
T ss_pred CCeEEEEECCCC
Confidence 999999998764
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.3e-28 Score=313.36 Aligned_cols=283 Identities=20% Similarity=0.332 Sum_probs=233.9
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc
Q psy9598 515 RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594 (1915)
Q Consensus 515 ~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~ 594 (1915)
.+|...|+|++| ++.+|++|+.||+|+|||+.++..+..+.+|.+.|++++|.. .+|++|+.||+|++||+.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~------~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE------RVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS------SEEEEEETTSCEEEEESS
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECC------CEEEEEcCCCeEEEEECC
Confidence 457778998887 788999999999999999999999999999999999999943 799999999999999998
Q ss_pred cCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC
Q psy9598 595 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd 674 (1915)
++..+.. +..|...|.+++|++ .+|++|+.||.|++||+...........+.+|...|.+++| +
T Consensus 202 ~~~~~~~------------~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~ 265 (435)
T 1p22_A 202 TGEMLNT------------LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--D 265 (435)
T ss_dssp SCCEEEE------------ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--E
T ss_pred CCcEEEE------------EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--C
Confidence 8754332 235678899999974 59999999999999999654444444678899999999999 6
Q ss_pred CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC
Q psy9598 675 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 675 g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg 754 (1915)
+.+|++|+.||.|++||+.++...... ..|...|.+++| ++.+|++++. ||.|++||+.++
T Consensus 266 ~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------~~~~~~v~~~~~--~~~~l~~g~~-dg~i~iwd~~~~ 326 (435)
T 1p22_A 266 DKYIVSASGDRTIKVWNTSTCEFVRTL----------------NGHKRGIACLQY--RDRLVVSGSS-DNTIRLWDIECG 326 (435)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEE----------------ECCSSCEEEEEE--ETTEEEEEET-TSCEEEEETTTC
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEE----------------cCCCCcEEEEEe--CCCEEEEEeC-CCeEEEEECCCC
Confidence 889999999999999999988754422 236677889988 4789999988 999999999999
Q ss_pred ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccc-------cceeeeeeecCCCCcceEEEEEcCCCC
Q psy9598 755 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR-------GYKWFHNIVEGQGEGALFDGKWSPDGT 827 (1915)
Q Consensus 755 ~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~-------~~~~~~~~~~~~~~~~V~~vafSpdg~ 827 (1915)
.++..+.+|...|.+++| ++.+|++|+.||.|+|||+.++... .+..+ ..|.+.|.+++| ++.
T Consensus 327 ~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~--~~~ 396 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-----VEHSGRVFRLQF--DEF 396 (435)
T ss_dssp CEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-----CCCSSCCCCEEE--CSS
T ss_pred CEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-----cCCCCCeEEEEe--CCC
Confidence 999999999999999998 4689999999999999999766510 02222 256789999999 789
Q ss_pred EEEEEeCCCeEEEEeCCCCcccc
Q psy9598 828 TCALTDSYGHLLVYGLGGFKRPQ 850 (1915)
Q Consensus 828 ~Lasg~~dG~I~Iwdl~s~~~~~ 850 (1915)
+|++|+.||.|+||++.+.....
T Consensus 397 ~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 397 QIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp CEEECCSSSEEEEEC--------
T ss_pred EEEEEeCCCEEEEEECCCCCCcc
Confidence 99999999999999998765443
No 109
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=320.87 Aligned_cols=310 Identities=16% Similarity=0.192 Sum_probs=240.3
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCcEEEEE-eCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCC---Cc---eEEE
Q psy9598 484 FDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQT---LA---PISV 555 (1915)
Q Consensus 484 fspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~t---g~---~~~~ 555 (1915)
|+|++..+++++ +|+ .+++++..+ .+|.+.|++|+|+| ++.+||+|+.||+|+|||+.+ +. +...
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 678888877765 488 578899999 89999999999999 999999999999999999976 43 2333
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc---cCccccceeccCccccccccCC--CCCceEEEE--ECC
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK---LDIDISKTVFHEPVMFNERIRP--GNAHILCSS--FSP 628 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~---~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~l~--fsp 628 (1915)
+ +|.+.|++++|+|. +.+|++|+.||+|++||+. .+........+. .....+.+ +...+.++. +++
T Consensus 108 ~-~h~~~v~~~~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPN----FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCEC--IRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp E-ECSSCEEEEEECTT----SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEE--EEEEEGGGGSSCCCEEEEEEEECS
T ss_pred c-cCCCCEEEEEEeCC----CCEEEEEeCCCEEEEEEeccccCCceeeccccce--eEEEEccCcccccCceEEEEEEcC
Confidence 3 59999999999984 4899999999999999995 443332222220 00111112 557788888 678
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCceeEEecc--CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE--HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~--h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
++.+|++|+.||.|++||+. ....+..+.+ |.+.|.+++|+|++.+|++|+.||.|++||++++.......
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---- 253 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIR---TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS---- 253 (437)
T ss_dssp SCEEEEEEETTSEEEEEETT---TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB----
T ss_pred CCCEEEEEeCCCeEEEEeCC---CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe----
Confidence 99999999999999999994 3455666777 89999999999999999999999999999999876543211
Q ss_pred cCCCCccccccccccccEEEEEECC----CCCEEEEEEecCCeEEEEECCCCceEEEeeCC-------------------
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDA----SDRWVITAINFNFQIKIWDAFNGDLVQVLKGH------------------- 763 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~sp----dg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH------------------- 763 (1915)
..+...|.+++|+| ++.+|++++. ||.|+|||+.+++++..+.+|
T Consensus 254 -----------~~~~~~v~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (437)
T 3gre_A 254 -----------FGDHAPITHVEVCQFYGKNSVIVVGGSS-KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL 321 (437)
T ss_dssp -----------CTTCEEEEEEEECTTTCTTEEEEEEEST-TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred -----------cCCCCceEEEEeccccCCCccEEEEEcC-CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccc
Confidence 13556899996664 5778888887 999999999999998888755
Q ss_pred -------CCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEE
Q psy9598 764 -------TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 832 (1915)
Q Consensus 764 -------~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg 832 (1915)
...|++++|++ +.+|++|+.||.|++||+.+++. +..+... ......+..+.+++...+++..
T Consensus 322 ~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 322 NFCGIRSLNALSTISVSN--DKILLTDEATSSIVMFSLNELSS--SKAVISP--SRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp CCCCCCSGGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGG--CEEEECC----CCCEEEEEEEETTEEEEEEE
T ss_pred eecccccCCceEEEEECC--ceEEEecCCCCeEEEEECCCccc--ceEEecc--cccCceEEEEEeecceEEEEEe
Confidence 44577888883 58999999999999999999887 5555411 1123456667777776666655
No 110
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=9.9e-29 Score=304.14 Aligned_cols=297 Identities=16% Similarity=0.142 Sum_probs=238.1
Q ss_pred EEECCCCcEEEEEeCCCCCEEEEEEeCC---CCEEEEEeCCCcEEEEECCC-CceE-EEeecCCCCeEEEEeccCccCCC
Q psy9598 502 LWRARDGKLLATLRGCSGEISDIAIDNR---NILLAAGTVDKTIRIWNLQT-LAPI-SVLVGHQGIITGVNFCPLEVNGF 576 (1915)
Q Consensus 502 IWd~~tg~~~~~l~gH~~~I~~Lafspd---g~~LaSgs~DgtIrVWDl~t-g~~~-~~l~~h~~~V~sl~fsp~~~~d~ 576 (1915)
.|+......+..+.+|.+.|++|+|+|+ |.+|++|+.||.|+|||+.+ +..+ ..+.+|.+.|++++|+|+ +
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~ 98 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD----G 98 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT----S
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC----C
Confidence 3456667788889999999999999999 59999999999999999997 5555 788899999999999994 5
Q ss_pred cEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE--CCCCcEEEEEeCCCeEEEEEecCCCCCc
Q psy9598 577 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF--SPGGLFLATGSGDHHVRVYKMDGVDSPL 654 (1915)
Q Consensus 577 ~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f--spdg~~Lasgs~Dg~I~IwDl~~~~~~~ 654 (1915)
.+|++|+.||.|++||+.++.... ...|...|.+++| ++++.+|++|+.||.|++||+.. ..
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~ 162 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQ-------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS---SN 162 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE-------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC---SS
T ss_pred CEEEEEcCCCcEEEEEcCCCCcee-------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC---Cc
Confidence 899999999999999998875322 1236688999999 99999999999999999999953 33
Q ss_pred eeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC
Q psy9598 655 GILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 734 (1915)
Q Consensus 655 ~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~ 734 (1915)
.+..+..|. .+.++.+. +..+++++.++.+.+|++.......... .......+.++++.++..
T Consensus 163 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRI--------------ESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp CSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEEC--------------CCSCSSCEEEEEEEECTT
T ss_pred EEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhc--------------cccccCCCceEEEcccCC
Confidence 445555553 56666665 4589999999999999998765332211 111223445555544443
Q ss_pred E----EEEEEecCCeEEEEECCCC---ceEEEeeCCCC------------CeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 735 W----VITAINFNFQIKIWDAFNG---DLVQVLKGHTN------------EVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 735 ~----L~t~s~~Dg~I~vwD~~tg---~~i~~l~gH~~------------~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
. +++++. ||.|++|++... ..+..+.+|.. .|++++|+| ++.+|++|+.||.|+|||+.
T Consensus 226 ~~~~~~~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 226 NKPTGFALGSI-EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp SCEEEEEEEET-TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETT
T ss_pred CCCCeEEEecC-CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECC
Confidence 3 788877 999999999987 67888888876 799999999 99999999999999999999
Q ss_pred CCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 796 SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 796 s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
++.+ +..+. .+.+.|.+++|+|+|.+||+++.||....|++-
T Consensus 304 ~~~~--~~~~~-----~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 304 ARTK--LKTSE-----QLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp TTEE--EEECC-----CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred CCcE--EEEec-----CCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 8877 55544 567899999999999999999999865555543
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-29 Score=341.76 Aligned_cols=263 Identities=22% Similarity=0.310 Sum_probs=219.7
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC--CCcEEEEEeCCCCCEEEEEEeCC--CCEEEEEeCCCcEEE
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR--DGKLLATLRGCSGEISDIAIDNR--NILLAAGTVDKTIRI 544 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~--tg~~~~~l~gH~~~I~~Lafspd--g~~LaSgs~DgtIrV 544 (1915)
..++.||.+.|+|++|+|+|.+|++|+.||.|+|||+. ++..+.++.+|.+.|++|+|+++ +.+|++|+.||+|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34688999999999999999999999999999999998 56788899999999999999988 999999999999999
Q ss_pred EECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 545 WNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 545 WDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
||+.++. .+..+.+|...|++++|+|.. ++.+|++|+.||+|++||+.++....... +..|...|.
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~~l~sgs~dg~I~vwdl~~~~~~~~~~----------~~~~~~~v~ 149 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHE--YGPLLLVASSDGKVSVVEFKENGTTSPII----------IDAHAIGVN 149 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETTSEEEEEECCSSSCCCCEE----------EECCSSCEE
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCC--CCCEEEEEeCCCcEEEEEeecCCCcceeE----------eecCCCceE
Confidence 9999987 778888999999999999951 25899999999999999998874332222 235678899
Q ss_pred EEEECC-------------CCcEEEEEeCCCeEEEEEecCCCCC-ceeEEeccCCCCeeEEEEcCC---CCEEEEEeCCC
Q psy9598 623 CSSFSP-------------GGLFLATGSGDHHVRVYKMDGVDSP-LGILEVEEHSDKVDSIQWSHS---HLRFVSGSRDG 685 (1915)
Q Consensus 623 ~l~fsp-------------dg~~Lasgs~Dg~I~IwDl~~~~~~-~~i~~l~~h~~~V~sl~fspd---g~~L~sgs~DG 685 (1915)
+++|+| ++.+|++|+.||.|++||+...... ..+..+.+|.+.|.+++|+|+ +.+|++|+.||
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 999999 5899999999999999999654322 455677899999999999999 89999999999
Q ss_pred cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy9598 686 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD 755 (1915)
Q Consensus 686 ~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~ 755 (1915)
.|++||+.++.... .........+...|++++|+|+|.+|++++. ||.|+||++.++.
T Consensus 230 ~I~iwd~~~~~~~~-----------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 230 TCIIWTQDNEQGPW-----------KKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEG 287 (753)
T ss_dssp CEEEEEESSSSSCC-----------BCCBSSSSCCSSCCCCEEECTTTCCEEEECS-SSCEECCBCCSSS
T ss_pred EEEEecCCCCCCcc-----------eeEEeccCCCCCceEEEEEcCCCCEEEEEcC-CCEEEEEecCCCC
Confidence 99999998764110 0111223446778999999999999999998 9999999998643
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=5.7e-29 Score=312.98 Aligned_cols=289 Identities=15% Similarity=0.156 Sum_probs=235.2
Q ss_pred cEEEEEEcCCCCEEE-EEECCCcEEEEECCCC----cEEEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCC-
Q psy9598 478 AVFCVLFDKLGEVIV-TGADDLLIKLWRARDG----KLLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTL- 550 (1915)
Q Consensus 478 ~V~~vafspdg~~La-TGs~Dg~I~IWd~~tg----~~~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg- 550 (1915)
...+++++|+...++ +|+.||.|+||++... ..+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 344688998765444 5788999999999664 23456789999999999999 9999999999999999999987
Q ss_pred ------ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 551 ------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 551 ------~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
.++..+.+|...|++++|+|.+ ..+|++|+.||+|++||+.++..+..+. ...|...|.++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~v~~~ 182 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTA---QNVLLSAGCDNVILVWDVGTGAAVLTLG----------PDVHPDTIYSV 182 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSB---TTEEEEEETTSCEEEEETTTTEEEEEEC----------TTTCCSCEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCC---CCEEEEEcCCCEEEEEECCCCCccEEEe----------cCCCCCceEEE
Confidence 6788999999999999999943 3699999999999999998875433221 03467889999
Q ss_pred EECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe-ccCCCC-eeEEEEcCCCCEEEEE---eCCCcEEEEEccCCceEE
Q psy9598 625 SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHSDK-VDSIQWSHSHLRFVSG---SRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 625 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-~~h~~~-V~sl~fspdg~~L~sg---s~DG~I~IWDl~~~~~~~ 699 (1915)
+|+|+|.+|++|+.||.|++||+. ....+..+ .+|.+. +.+++|++++.+|++| +.||.|++||+.+.....
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~ 259 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPR---KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL 259 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETT---TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS
T ss_pred EECCCCCEEEEEecCCcEEEEeCC---CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc
Confidence 999999999999999999999994 34456666 688776 8999999999999999 799999999998765211
Q ss_pred eeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce-EEEeeC--CCCCeEEEEEccCC
Q psy9598 700 IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL-VQVLKG--HTNEVFVLESHPFD 776 (1915)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~-i~~l~g--H~~~V~sl~~sp~d 776 (1915)
. .....+...+.+++|+|++.+|++++..||.|++||+.+++. +..+.. |...|.+++|+| +
T Consensus 260 ~--------------~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp-~ 324 (402)
T 2aq5_A 260 S--------------LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP-K 324 (402)
T ss_dssp E--------------EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC-G
T ss_pred e--------------EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec-c
Confidence 0 011224567899999999999987775599999999998874 555554 458999999999 8
Q ss_pred CCEEEEEecCceEEEEECCCCcc
Q psy9598 777 SRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 777 g~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+.++++ .++.+++|++.++..
T Consensus 325 ~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 325 RGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp GGSCGG--GTEEEEEEEEETTEE
T ss_pred ccccee--cceeEEEEEcCCCcE
Confidence 777664 577999999987654
No 113
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.96 E-value=1e-29 Score=301.08 Aligned_cols=177 Identities=24% Similarity=0.311 Sum_probs=139.3
Q ss_pred ChHHHHhhcccccC-CHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhccccCCCCC
Q psy9598 1 LTTLRARFQNRFYR-RITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSS 79 (1915)
Q Consensus 1 L~tI~~kl~~~~Y~-~~~ef~~D~~li~~Na~~yN~p~s~I~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1915)
|+||++|| +.|. ++++|++||+|||+||++||+++|.|+++|..|++++.+.+..... ....
T Consensus 73 L~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~k~---------~~~~------ 135 (311)
T 2r0y_A 73 INEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKN---------LKRN------ 135 (311)
T ss_dssp HHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHT---------GGGC------
T ss_pred HHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhhccc---------CCCC------
Confidence 68999999 3454 8999999999999999999999999999999999999886654210 0000
Q ss_pred cccccccccccccccCCCCcchhhhhhhhccccCCchhHHHHHHHHH-----------HHH-------hcCCCCCCCCCC
Q psy9598 80 EEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVL-----------ETL-------WVCPDSEPFRKP 141 (1915)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il-----------~~l-------~~~~~~~~F~~p 141 (1915)
.......+ ..+...|..++ ... ..|+.++||++|
T Consensus 136 -----------------~~i~~~~k-----------~~l~~~~~~l~~~~~~~i~~~l~~~r~~k~~~~~~~~s~~F~~p 187 (311)
T 2r0y_A 136 -----------------YLINSEVK-----------AKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMEL 187 (311)
T ss_dssp -----------------CBCCHHHH-----------HHHHHHHHHHHHCCHHHHHHHHHGGGSCSSCCCSSCTTGGGSSC
T ss_pred -----------------CCCChHHH-----------HHHHHHHHHHHhhhHHHHHHHHhccccccccccCCccHHHHhCC
Confidence 00000000 00111122221 111 146789999999
Q ss_pred CCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH-HH
Q psy9598 142 VDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL-TV 220 (1915)
Q Consensus 142 vd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~-~~ 220 (1915)
||...+||||+||++||||+||++||+++.|.++++|.+||+|||+||++||+++ |.||.+|..|+++|+++|++. ..
T Consensus 188 vd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~p 266 (311)
T 2r0y_A 188 VDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPS-ALIYKDATTLTNYFNYLIQKEFFP 266 (311)
T ss_dssp CCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999976 999999999999999999983 44
Q ss_pred hhh
Q psy9598 221 RWN 223 (1915)
Q Consensus 221 ~~~ 223 (1915)
.+.
T Consensus 267 ~~~ 269 (311)
T 2r0y_A 267 ELQ 269 (311)
T ss_dssp HHH
T ss_pred cch
Confidence 443
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-29 Score=316.44 Aligned_cols=325 Identities=11% Similarity=0.054 Sum_probs=242.5
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 595 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~ 595 (1915)
.-...|.+|+|+|||++|||++.|++|+ |...++.+ .+|...|++++|+|+ + .++.+.+|+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPd----g-------~~~~~~~~~~~~ 76 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPL----E-------FENKLDFELAQQ 76 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECC----C-------CCCTTTTSCCCS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCC----C-------CcceEEEEeCCC
Confidence 3467899999999999999999999999 76666544 799999999999994 2 445544444322
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC-----CeeEEE
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD-----KVDSIQ 670 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~-----~V~sl~ 670 (1915)
. ..+.+ .+...|.+++|||+|..||+++.||.|+||+..+ .+..+. |.. .|.+++
T Consensus 77 ~---~~~~~-----------~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~sva 136 (588)
T 2j04_A 77 N---GLLNS-----------QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFE 136 (588)
T ss_dssp S---CSSTT-----------SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEE
T ss_pred c---eEeec-----------CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEE
Confidence 1 11111 2357899999999999999999999999999622 455556 665 499999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
|||+|++|++|+.||+|+|||+.++...... ............+|...|.+++|+|+| +++++. |+.|++||
T Consensus 137 fSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~-----~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~-D~tVrlWd 208 (588)
T 2j04_A 137 WNPIESSIVVGNEDGELQFFSIRKNSENTPE-----FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS-NNSVFSMT 208 (588)
T ss_dssp ECSSSSCEEEEETTSEEEEEECCCCTTTCCC-----CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET-TCCEEEEC
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcccccc-----ceeeeeeecccccccccEEEEEEcCCc--EEEEeC-CCeEEEEE
Confidence 9999999999999999999999876420000 000000011123477899999999999 777777 99999999
Q ss_pred CCCCce---EEEe-eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE--cC
Q psy9598 751 AFNGDL---VQVL-KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW--SP 824 (1915)
Q Consensus 751 ~~tg~~---i~~l-~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf--Sp 824 (1915)
+..+.. ..++ .+|...|.+|+|+ +.+||+++ +|+|++||+.++.. .. + ..+|.+.|.+++| +|
T Consensus 209 ~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~--~~-~----~~gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 209 VSASSHQPVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSI--SS-L----KTGSLENFHIIPLNHEK 277 (588)
T ss_dssp CCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEE--EE-E----ECSCCSCCCEEEETTCS
T ss_pred CCCCccccceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeE--EE-E----EcCCCceEEEEEeeeCC
Confidence 988773 4567 4888999999998 48899887 69999999987665 22 1 1147789999999 99
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCcccccCCCceeecCCCCeeeecCCCccceeecccCCCCCcCCCCcccCCCCCCCCCCC
Q psy9598 825 DGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEV 904 (1915)
Q Consensus 825 dg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~~~~F~~d~~~Lv~~~~~~~~v~D~~t~~~p~~~~~pfl~~~~G~~ypp~~ 904 (1915)
|+..|++++.+|. +||.+. .+.|++|+..++.. ...+.+|+...+... .....|. +.|..++|++
T Consensus 278 d~~~La~a~edG~-klw~~d----------~~~~spd~~l~a~~-d~~v~lW~~~g~~l~-~~~~~~~--I~~va~SPdG 342 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLED----------ELHVTADNIIAPYL-EKKFKKWSTIWNEFN-NYETTLV--IHGISLSPDG 342 (588)
T ss_dssp SCEEEEECSSCEE-EEEESS----------SEEEECCCSSHHHH-HHHHHHTTTTTTSSS-SSCCEEE--EEEEEECTTS
T ss_pred CCCEEEEEcCCCC-EEEeec----------cEEECCCceEEEEc-CCEEEEEECCCCcee-eeccceE--EEEEEECCCC
Confidence 9999999999999 999988 25699999888754 444568876544311 1111211 4456778888
Q ss_pred cccccC
Q psy9598 905 QRLVPG 910 (1915)
Q Consensus 905 Q~lv~G 910 (1915)
+.++.+
T Consensus 343 ~~lA~~ 348 (588)
T 2j04_A 343 YSIAIV 348 (588)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 888765
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=9.4e-27 Score=290.77 Aligned_cols=335 Identities=10% Similarity=0.026 Sum_probs=254.7
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceEEEeecCCCCeEEE
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGV 566 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl 566 (1915)
+.++++++.|+.|++||+.+++++..+.+|. .+.+++|+|++.+| ++++.|++|++||+.+++.+..+..|. .|.++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 3468889999999999999999999998775 48999999999977 677789999999999999998887665 89999
Q ss_pred EeccCccCCCcEE-EEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEE-EEEeCCCeEEE
Q psy9598 567 NFCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL-ATGSGDHHVRV 644 (1915)
Q Consensus 567 ~fsp~~~~d~~~L-~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~L-asgs~Dg~I~I 644 (1915)
+|+|++ .+| ++++.++.|++||+.++..+.... +...+.+++|+|+|..| ++++.++.|++
T Consensus 80 ~~spdg----~~l~~~~~~~~~v~v~d~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 142 (391)
T 1l0q_A 80 AVSPDG----KQVYVTNMASSTLSVIDTTSNTVAGTVK-------------TGKSPLGLALSPDGKKLYVTNNGDKTVSV 142 (391)
T ss_dssp EECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEE-------------CSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EECCCC----CEEEEEECCCCEEEEEECCCCeEEEEEe-------------CCCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 999953 555 566678999999999875433322 12568999999999977 68888999999
Q ss_pred EEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE-EEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 645 YKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF-VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 645 wDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L-~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
||+. ....+..+..| ..+.+++|+|++.+| ++++.+|.|++||+.++...... .+...
T Consensus 143 ~d~~---~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-----------------~~~~~ 201 (391)
T 1l0q_A 143 INTV---TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-----------------KVEAA 201 (391)
T ss_dssp EETT---TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----------------ECSSE
T ss_pred EECC---CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE-----------------ecCCC
Confidence 9984 33444455444 567999999999877 67788999999999987654322 13346
Q ss_pred EEEEEECCCCCEEEEEEe--cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEE-EEEecCceEEEEECCCCccc
Q psy9598 724 VTMVAWDASDRWVITAIN--FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVL-LSAGHDGLIIIWDILSSKQR 800 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~--~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~L-aSgs~DG~I~IWdl~s~~~~ 800 (1915)
+.+++|+|++.+|++++. .++.|++||+.+++.+..+..|.. +.+++|+| ++.+| ++++.|+.|++||+.+++.
T Consensus 202 ~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~- 278 (391)
T 1l0q_A 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTI- 278 (391)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECT-TSSEEEEEETTTTEEEEEETTTTEE-
T ss_pred ccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcE-
Confidence 789999999999999884 489999999999999999988764 78999999 77766 6778899999999998876
Q ss_pred cceeeeeeecCCCCc----------ceEEEEEcCCC----------CEEEEEeCCCeEEEEeCCCCcccccCCCceeecC
Q psy9598 801 GYKWFHNIVEGQGEG----------ALFDGKWSPDG----------TTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHT 860 (1915)
Q Consensus 801 ~~~~~~~~~~~~~~~----------~V~~vafSpdg----------~~Lasg~~dG~I~Iwdl~s~~~~~~l~~~~~F~~ 860 (1915)
+..+.......+.+ .+....|+.+. ..|...+.+..+++|++.++...........|++
T Consensus 279 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~~~~~~~~~~~ 357 (391)
T 1l0q_A 279 -TATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKKQNPTHTYSE 357 (391)
T ss_dssp -EEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEECSSSCEECCSS
T ss_pred -EEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccCcCCCeEEeCC
Confidence 44443110000000 01112222221 3455566788899999988765433334567888
Q ss_pred CCCeee
Q psy9598 861 DYRTLN 866 (1915)
Q Consensus 861 d~~~Lv 866 (1915)
+|...+
T Consensus 358 ~g~y~~ 363 (391)
T 1l0q_A 358 TGIYTV 363 (391)
T ss_dssp CEEEEE
T ss_pred CceEEE
Confidence 887665
No 116
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=6.2e-28 Score=293.54 Aligned_cols=311 Identities=14% Similarity=0.149 Sum_probs=219.0
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL----APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg----~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
..+.+|.+.|++|+|+|++.+||+|+.||+|+|||+.++ ..+..+.+|...|++++|+|.. ++.+|++|+.||+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE--YGRIIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG--GCSEEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC--CCCEEEEEcCCCe
Confidence 356899999999999999999999999999999999876 4677788999999999999841 3589999999999
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeE--------
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGIL-------- 657 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~-------- 657 (1915)
|++||+.++...... ........+..|...|.+++|+|+ +.+|++|+.||.|++||+........+.
T Consensus 83 v~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 83 VKLWEEDPDQEECSG---RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EEEEEECTTSCTTSS---CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred EEEEecCCCcccccc---cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 999999876432110 001122334467889999999999 9999999999999999996543222211
Q ss_pred --EeccCCCCeeEEEEcCC---CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC
Q psy9598 658 --EVEEHSDKVDSIQWSHS---HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 732 (1915)
Q Consensus 658 --~l~~h~~~V~sl~fspd---g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd 732 (1915)
...+|...|.+++|+|+ +.+|++++.++.+.+|+...+..... .....|...|++++|+|+
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA--------------AKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE--------------EECCCCCSCEEEEEECCC
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee--------------eecCCCCcceeEEEECCC
Confidence 11268889999999997 89999999999998887776653221 123347789999999999
Q ss_pred C----CEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEe----cCceEEEEECCCCcccccee
Q psy9598 733 D----RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAG----HDGLIIIWDILSSKQRGYKW 804 (1915)
Q Consensus 733 g----~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs----~DG~I~IWdl~s~~~~~~~~ 804 (1915)
+ .+|++++. ||.|++||+.++........+...+....+++ ....++++. ..+.+.+|+...... +..
T Consensus 226 ~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 301 (351)
T 3f3f_A 226 IGRWYQLIATGCK-DGRIRIFKITEKLSPLASEESLTNSNMFDNSA-DVDMDAQGRSDSNTEEKAELQSNLQVEL--LSE 301 (351)
T ss_dssp SSCSSEEEEEEET-TSCEEEEEEEECC----------------------------------------CCSEEEEE--EEE
T ss_pred CCCcceEEEEEcC-CCeEEEEeCCCCcCccccCCcccceeccCCCc-ccccccccccccccceeeeecccccccE--EEE
Confidence 8 78888887 99999999988766555544444444444444 333344433 334455555444333 333
Q ss_pred eeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccc
Q psy9598 805 FHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQ 850 (1915)
Q Consensus 805 ~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~ 850 (1915)
+. .|.+.|++++|+|+|.+||+++.||.|+||++.++....
T Consensus 302 ~~-----~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 302 HD-----DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EC-----TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred Ee-----cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 32 466889999999999999999999999999999876543
No 117
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.96 E-value=3.6e-29 Score=303.77 Aligned_cols=177 Identities=23% Similarity=0.321 Sum_probs=139.1
Q ss_pred ChHHHHhhcccccC-CHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhccccCCCCC
Q psy9598 1 LTTLRARFQNRFYR-RITSAQFDVRYLAANAEKFNEPHSNIVKYARIITDLLLRIIKEPNPVDVPVVYHELLQNYETSSS 79 (1915)
Q Consensus 1 L~tI~~kl~~~~Y~-~~~ef~~D~~li~~Na~~yN~p~s~I~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1915)
|+||++|| +.|. ++++|++||+|||+||++||+++|.|+++|..|.++|.+.+...... ..
T Consensus 123 l~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~k~~---------~~------- 184 (361)
T 2r10_A 123 INEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNL---------KR------- 184 (361)
T ss_dssp HHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHHHHHHHHHHHHTT---------TT-------
T ss_pred HHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcccc---------CC-------
Confidence 68999999 3344 89999999999999999999999999999999999998866532100 00
Q ss_pred cccccccccccccccCCCCcchhhhhhhhccccCCchhHHHHHHHHHH--------HH----------hcCCCCCCCCCC
Q psy9598 80 EEEEEEDSKSRQRRVRPTAVTRAQREAMNQKKLKRPFNWKNECREVLE--------TL----------WVCPDSEPFRKP 141 (1915)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~--------~l----------~~~~~~~~F~~p 141 (1915)
+..+....+ ..+...|..|+. .+ ..|+.++||++|
T Consensus 185 ----------------~~~i~~~~k-----------~~l~~~~~~l~~~~~~~i~~~~~~~r~~~~~~~~~~~s~~F~~p 237 (361)
T 2r10_A 185 ----------------NYLINSEVK-----------AKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMEL 237 (361)
T ss_dssp ----------------CCBCCHHHH-----------HHHHHHHHHHHHCCHHHHHHHHHGGGCCSSCCCSSCTTGGGSSC
T ss_pred ----------------cCcCCHHHH-----------HHHHHHHHHhhccchHHHHHHHhccccccccccCCcchhcccCC
Confidence 000000000 001112222221 11 146789999999
Q ss_pred CCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH-HH
Q psy9598 142 VDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRL-TV 220 (1915)
Q Consensus 142 vd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~-~~ 220 (1915)
||...+||||+||++||||+||++||+++.|.++++|..||+|||.||++||+++ |.||.+|..|+++|+++|++. ..
T Consensus 238 vd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~p 316 (361)
T 2r10_A 238 VDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPS-ALIYKDATTLTNYFNYLIQKEFFP 316 (361)
T ss_dssp CCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999976 999999999999999999983 44
Q ss_pred hhh
Q psy9598 221 RWN 223 (1915)
Q Consensus 221 ~~~ 223 (1915)
.+.
T Consensus 317 ~~~ 319 (361)
T 2r10_A 317 ELQ 319 (361)
T ss_dssp HHH
T ss_pred cch
Confidence 443
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.8e-27 Score=299.56 Aligned_cols=300 Identities=11% Similarity=0.061 Sum_probs=234.5
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc---EEEEEeCC------------------------------------
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK---LLATLRGC------------------------------------ 517 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~---~~~~l~gH------------------------------------ 517 (1915)
.+|.||+|+++|++|++++ ++.|++||+.+|+ .+.++..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 5789999999999777664 7799999999998 77666543
Q ss_pred ------------------CCCEEEEEEeCCCCEE-EEEeCCCcEEEEECC--CCceEEEee--cCCCCeEEEEeccCccC
Q psy9598 518 ------------------SGEISDIAIDNRNILL-AAGTVDKTIRIWNLQ--TLAPISVLV--GHQGIITGVNFCPLEVN 574 (1915)
Q Consensus 518 ------------------~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~--tg~~~~~l~--~h~~~V~sl~fsp~~~~ 574 (1915)
.+.|++++|+|++.+| ++|+.||+|+|||+. ++.++..+. .|...|++++|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--- 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED--- 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT---
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC---
Confidence 3379999999999996 899999999999999 888888886 56789999999994
Q ss_pred CCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC---CcEEEEEeCCCeEEEEEecCCC
Q psy9598 575 GFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATGSGDHHVRVYKMDGVD 651 (1915)
Q Consensus 575 d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd---g~~Lasgs~Dg~I~IwDl~~~~ 651 (1915)
+.+|++|+.+|.|.+|++.++..... ....+.+|...|.+++|+|+ +.+|++|+.|+.|+|||+..
T Consensus 161 -~~~l~~~~~~g~v~~~~~~~~~~~~~--------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-- 229 (450)
T 2vdu_B 161 -DTTVIIADKFGDVYSIDINSIPEEKF--------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-- 229 (450)
T ss_dssp -SSEEEEEETTSEEEEEETTSCCCSSC--------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC--
T ss_pred -CCEEEEEeCCCcEEEEecCCcccccc--------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC--
Confidence 48999999999999999987653220 01123356788999999999 99999999999999999943
Q ss_pred CCceeEE-eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc---c-CCCC-----cccccccccc
Q psy9598 652 SPLGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT---C-LPHT-----KETSDETNKK 721 (1915)
Q Consensus 652 ~~~~i~~-l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~---~-~~~~-----~~~~~~~~~~ 721 (1915)
...+.. +.+|...|.+++|+ ++.+|++|+.||+|+|||+.++++......... . .... ..........
T Consensus 230 -~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 230 -CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp -TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred -CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 333444 56899999999999 999999999999999999999886554321100 0 0000 0000111345
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEEC--CCC---ceEEEeeCCCCCeEEEEEccCCCCEEEEEec-------CceE
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDA--FNG---DLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-------DGLI 789 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~--~tg---~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~-------DG~I 789 (1915)
..|.+++|+|++.+|++++..++.|+||++ .++ .++..+.+| +.|.+++|+| ++ ++++++. +..|
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~-~~v~~~~~~~~~~~~~~i 384 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN-DE-FQVTLDNKESSGVQKNFA 384 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET-TE-EEEEECCTTCCSSCCCSE
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC-Cc-EEEEEecccCCCCCCcce
Confidence 678999999999999999944999999999 566 778888888 8899999999 54 4554433 4568
Q ss_pred EEEECCC
Q psy9598 790 IIWDILS 796 (1915)
Q Consensus 790 ~IWdl~s 796 (1915)
.||.+..
T Consensus 385 ~v~~~~~ 391 (450)
T 2vdu_B 385 KFIEYNL 391 (450)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 8887754
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2.4e-27 Score=301.45 Aligned_cols=261 Identities=16% Similarity=0.285 Sum_probs=215.7
Q ss_pred EEEeCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCC----------CceEEEeecCCCCeEEEEeccCccCCCcEEE
Q psy9598 512 ATLRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQT----------LAPISVLVGHQGIITGVNFCPLEVNGFNYLA 580 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~t----------g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~ 580 (1915)
..+.+|.+.|++|+|+|+ +.+||+|+.||.|+||++.+ +.++..+.+|...|++|+|+|.+ ..+|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~ 198 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL---NGYLL 198 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS---TTEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC---CCeEE
Confidence 455679999999999997 78999999999999999986 67888999999999999999954 23999
Q ss_pred EEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEe
Q psy9598 581 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEV 659 (1915)
Q Consensus 581 sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l 659 (1915)
+|+.||+|++|++..+....... .....+..|...|.+++|+| ++.+|++|+.||.|++||++.......+..+
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVI-----DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEE-----ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred EEeCCCeEEEEeCCCCCCCCcee-----ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 99999999999998753221111 11223446788999999999 6789999999999999999755434566677
Q ss_pred ccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCE-EE
Q psy9598 660 EEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRW-VI 737 (1915)
Q Consensus 660 ~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~-L~ 737 (1915)
..|...|.+|+|+|++. +|++|+.||.|+|||++.... .......|...|++++|+|++.+ |+
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---------------~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---------------KLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---------------CSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---------------CeEEeecCCCCEEEEEECCCCCCEEE
Confidence 89999999999999987 688999999999999986431 11122346788999999999964 66
Q ss_pred EEEecCCeEEEEECCC--------------CceEEEeeCCCCCeEEEEEccCCCC-EEEEEecCceEEEEECCCC
Q psy9598 738 TAINFNFQIKIWDAFN--------------GDLVQVLKGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 738 t~s~~Dg~I~vwD~~t--------------g~~i~~l~gH~~~V~sl~~sp~dg~-~LaSgs~DG~I~IWdl~s~ 797 (1915)
+++. ||.|+|||+.. ..++..+.+|...|++++|+| ++. +|++++.||.|+||++...
T Consensus 339 s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 339 SSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEET-TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECHH
T ss_pred EEeC-CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC-CCCCEEEEEECCCCEEEeEcccc
Confidence 6666 99999999986 477888899999999999999 666 9999999999999999754
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.4e-26 Score=289.92 Aligned_cols=323 Identities=9% Similarity=0.058 Sum_probs=251.6
Q ss_pred CCCcEEEEE---EcCCCCEEEEE--------------ECCC--cEEEEECCCC--cEEEEEeCCCCCEEEEEEeCCCCEE
Q psy9598 475 HLSAVFCVL---FDKLGEVIVTG--------------ADDL--LIKLWRARDG--KLLATLRGCSGEISDIAIDNRNILL 533 (1915)
Q Consensus 475 H~~~V~~va---fspdg~~LaTG--------------s~Dg--~I~IWd~~tg--~~~~~l~gH~~~I~~Lafspdg~~L 533 (1915)
+...++.++ |+|++..+++. +.++ .|.+||..++ ..+..+..+. .+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence 345566677 77766665543 3333 4444455445 5666676554 46699999988888
Q ss_pred EEEeCCCcEEEEECCCCceEE-----EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcc
Q psy9598 534 AAGTVDKTIRIWNLQTLAPIS-----VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 534 aSgs~DgtIrVWDl~tg~~~~-----~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
++++.++.|++||+.+++.+. .+.+|.+.|++++|++. +.++++++.|+.|++||+.++..+..+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~s~~~d~~v~~~d~~~~~~~~~~~----- 208 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH----NELWVSQMQANAVHVFDLKTLAYKATVD----- 208 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG----TEEEEEEGGGTEEEEEETTTCCEEEEEE-----
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC----CEEEEEECCCCEEEEEECCCceEEEEEc-----
Confidence 888889999999999999887 34578999999999884 5899999999999999998775433322
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEE-EeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-----
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLAT-GSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS----- 682 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Las-gs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs----- 682 (1915)
.+...+.+++|+|++..|++ ++.++.|++||+.. ...+..+.. ...+.+++|+|+|.+|++++
T Consensus 209 -------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 209 -------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT---KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp -------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred -------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC---CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 34578999999999998854 55799999999843 334444444 45699999999999999888
Q ss_pred ---CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE
Q psy9598 683 ---RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV 759 (1915)
Q Consensus 683 ---~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~ 759 (1915)
.||.|++||+.+++..... .+...+.+++|+|++.++++++..++.|++||+.+++.+..
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTI-----------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEE-----------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccCCCeEEEEECCCCcEEeec-----------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 5899999999887644321 13446788999999988877765599999999999998888
Q ss_pred eeCCCCCeEEEEEccCCCCEEEEEec---------------CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 760 LKGHTNEVFVLESHPFDSRVLLSAGH---------------DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 760 l~gH~~~V~sl~~sp~dg~~LaSgs~---------------DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
+. |...+.+++|+| ++.+|++++. ||.|++||+.+++. +..+. +...+.+++|+|
T Consensus 341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~--~~~~~------~~~~~~~~~~s~ 410 (433)
T 3bws_A 341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV--KEFWE------AGNQPTGLDVSP 410 (433)
T ss_dssp EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE--EEEEE------CSSSEEEEEECT
T ss_pred ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcE--EEEec------CCCCCceEEEcC
Confidence 86 677899999999 8888888776 57999999998877 55544 245789999999
Q ss_pred CCCEEEEEeC-CCeEEEEeCCC
Q psy9598 825 DGTTCALTDS-YGHLLVYGLGG 845 (1915)
Q Consensus 825 dg~~Lasg~~-dG~I~Iwdl~s 845 (1915)
+|.+|++++. +|.|+||++..
T Consensus 411 dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCEEEEEETTTTEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEecC
Confidence 9999998875 99999999864
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=7.9e-27 Score=288.76 Aligned_cols=314 Identities=12% Similarity=0.062 Sum_probs=214.2
Q ss_pred EEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEE
Q psy9598 502 LWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAS 581 (1915)
Q Consensus 502 IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~s 581 (1915)
||++.+...+.++.+|...|++|+|+|+|++|++|+.++ ++||++.++..+.....+ .+..+++.+.. ..++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRT---NYVAFV 76 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTS---SEEEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCC---CEEEEE
Confidence 577778888888899999999999999999999998775 789999987766554333 47778887743 234467
Q ss_pred EeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc
Q psy9598 582 TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE 661 (1915)
Q Consensus 582 gs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~ 661 (1915)
|+.|++|++||+.++..+..+.+ ...|.+++|++++ ++++ .++.|+|||+.... ..+..+..
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~~-------------~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~--~~~~~~~~ 138 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIKV-------------DAPVKDLFLSREF--IVVS-YGDVISVFKFGNPW--KRITDDIR 138 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEEC-------------SSCEEEEEECSSE--EEEE-ETTEEEEEESSTTC--CBSSCCEE
T ss_pred ECCccEEEEEECCCCcEEEEEEC-------------CCceEEEEEcCCE--EEEE-EcCEEEEEECCCCc--eeeEEecc
Confidence 88899999999998865544332 3679999999874 3333 47899999995431 22222222
Q ss_pred CCCCeeEEEEcCCCCEEEE--EeCCCcEEEEEccCCceEEeeecccccCCCCcc-ccccccccccEEEEEECCCCCEEEE
Q psy9598 662 HSDKVDSIQWSHSHLRFVS--GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE-TSDETNKKIKVTMVAWDASDRWVIT 738 (1915)
Q Consensus 662 h~~~V~sl~fspdg~~L~s--gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~va~spdg~~L~t 738 (1915)
....+++++ .++++ |+.||.|++||+.++......... ........ .....+|...|++++|+|+|.+|++
T Consensus 139 ---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~-~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 139 ---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQG-VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp ---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccc-ccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence 444556676 55665 689999999999875411100000 00000001 2334568899999999999999999
Q ss_pred EEecCCe-EEEEECCCCceEEEee-C-CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeee--------
Q psy9598 739 AINFNFQ-IKIWDAFNGDLVQVLK-G-HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN-------- 807 (1915)
Q Consensus 739 ~s~~Dg~-I~vwD~~tg~~i~~l~-g-H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~-------- 807 (1915)
++. |++ |+|||+.+++++..+. + |...|++++|+| ++.+|++|+.||+|+|||+..+.......+..
T Consensus 213 ~s~-d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 290 (355)
T 3vu4_A 213 CSQ-DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQ 290 (355)
T ss_dssp EET-TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCC
T ss_pred EeC-CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccc
Confidence 998 998 9999999999999998 6 999999999999 99999999999999999998764311111100
Q ss_pred --------eecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 808 --------IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 808 --------~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
.+..........++|++||.+|++++.||.+.+|++..+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 291 SEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0111112334679999999999999999999999987654
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=1.9e-26 Score=285.29 Aligned_cols=286 Identities=11% Similarity=0.145 Sum_probs=216.9
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQ 548 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~ 548 (1915)
..+.+|.+.|+||+|+|+|.+||+|+.+| ++||++.++..+.....+ .+..+++.+++.++ ++|+.|++|+|||+.
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~ 89 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDV 89 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence 35678999999999999999999998775 789999988777665433 57888898888877 567788999999999
Q ss_pred CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccC-ccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD-IDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 549 tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
+++++..+. |...|.++.|++ ..++++ .++.|++||+.++ ..+..+.. ....++++
T Consensus 90 ~~~~~~~~~-~~~~v~~v~~~~------~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---------------~~~~~~~s 146 (355)
T 3vu4_A 90 KKQDVSRIK-VDAPVKDLFLSR------EFIVVS-YGDVISVFKFGNPWKRITDDIR---------------FGGVCEFS 146 (355)
T ss_dssp TTEEEEEEE-CSSCEEEEEECS------SEEEEE-ETTEEEEEESSTTCCBSSCCEE---------------EEEEEEEE
T ss_pred CCcEEEEEE-CCCceEEEEEcC------CEEEEE-EcCEEEEEECCCCceeeEEecc---------------CCceEEEE
Confidence 999999887 677999999987 344444 4789999999877 43322211 23345566
Q ss_pred CCCcEEEE--EeCCCeEEEEEecCCCCC------------c-eeEEeccCCCCeeEEEEcCCCCEEEEEeCCCc-EEEEE
Q psy9598 628 PGGLFLAT--GSGDHHVRVYKMDGVDSP------------L-GILEVEEHSDKVDSIQWSHSHLRFVSGSRDGT-ALIWY 691 (1915)
Q Consensus 628 pdg~~Las--gs~Dg~I~IwDl~~~~~~------------~-~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~-I~IWD 691 (1915)
+ .++++ |+.+|.|++||+...... . .+..+.+|.+.|.+++|+|+|.+|++|+.||+ |+|||
T Consensus 147 ~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 147 N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 6 45555 688999999999542200 1 15678999999999999999999999999998 99999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce--EEEee--------
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL--VQVLK-------- 761 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~--i~~l~-------- 761 (1915)
+.+++...... ...|...|.+++|+|+|.+|++++. |++|+|||+..+.. ...+.
T Consensus 225 ~~~~~~~~~~~--------------~g~h~~~v~~~~~s~~~~~l~s~s~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
T 3vu4_A 225 TEDGVLVREFR--------------RGLDRADVVDMKWSTDGSKLAVVSD-KWTLHVFEIFNDQDNKRHALKGWINMKYF 289 (355)
T ss_dssp TTTCCEEEEEE--------------CTTCCSCEEEEEECTTSCEEEEEET-TCEEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred CCCCcEEEEEE--------------cCCCCCcEEEEEECCCCCEEEEEEC-CCEEEEEEccCCCCcccccccceeecccc
Confidence 99887554221 0126788999999999999999998 99999999976531 11111
Q ss_pred -------------CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 762 -------------GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 762 -------------gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
.+......++|++ ++.+|++++.||.+++|++..+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~~-d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 290 QSEWSLCNFKLSVDKHVRGCKIAWIS-ESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCSSCSEEEECCCCTTCCCCEEEESS-SSEEEEEETTTTEEEEEEEEEETT
T ss_pred ccccceeEEEeccCCCCCceEEEEeC-CCCEEEEEeCCCeEEEEEEEcCCC
Confidence 1122346789999 999999999999999999876554
No 123
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=3.9e-27 Score=296.21 Aligned_cols=276 Identities=14% Similarity=0.191 Sum_probs=224.9
Q ss_pred ccccCCCeEEEecccCCce--eeeEEecCCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCC-------cEEEEEeCC
Q psy9598 448 YSGPLSRSLMISSHKYSNL--RQHYVNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDG-------KLLATLRGC 517 (1915)
Q Consensus 448 ~tg~~d~~~~i~~~~~~~~--~~~~~l~gH~~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~tg-------~~~~~l~gH 517 (1915)
++|+.++.+.+|....... .....+.+|.+.|++++|+| ++.+||+|+.||.|+||++.++ ..+..+.+|
T Consensus 51 ~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h 130 (402)
T 2aq5_A 51 CEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130 (402)
T ss_dssp BCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC
T ss_pred EEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC
Confidence 3567889999997643321 23456789999999999999 9999999999999999999988 678899999
Q ss_pred CCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceEEEe--ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc
Q psy9598 518 SGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQTLAPISVL--VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594 (1915)
Q Consensus 518 ~~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~tg~~~~~l--~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~ 594 (1915)
...|++|+|+|++ .+|++|+.||+|+|||+.++.++..+ .+|.+.|++++|+|+ +.+|++|+.||.|++||+.
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD----GALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT----SSCEEEEETTSEEEEEETT
T ss_pred CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC----CCEEEEEecCCcEEEEeCC
Confidence 9999999999998 69999999999999999999999999 889999999999994 5899999999999999998
Q ss_pred cCccccceeccCccccccccCCCCC-ceEEEEECCCCcEEEEE---eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEE
Q psy9598 595 LDIDISKTVFHEPVMFNERIRPGNA-HILCSSFSPGGLFLATG---SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~fspdg~~Lasg---s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~ 670 (1915)
++..+..+. ..|.+ .+.+++|+|++.+|++| +.|+.|++||+.......... ...|...|.+++
T Consensus 207 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~ 274 (402)
T 2aq5_A 207 KGTVVAEKD-----------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDTSSGVLLPF 274 (402)
T ss_dssp TTEEEEEEE-----------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-ECCCCSSCEEEE
T ss_pred CCceeeeec-----------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-eccCCCceeEEE
Confidence 875433321 12333 38899999999999999 799999999996544333333 235778899999
Q ss_pred EcCCCCEEEE-EeCCCcEEEEEccCCce-EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 671 WSHSHLRFVS-GSRDGTALIWYYKCSQW-RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 671 fspdg~~L~s-gs~DG~I~IWDl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
|+|++.+|++ |+.||.|++||+.++.. ..... ...+...|.+++|+|++.++++ . ++.+++
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~--------------~~~~~~~v~~~~~sp~~~~~~s--~-~~~~~~ 337 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS--------------MFSSKESQRGMGYMPKRGLEVN--K-CEIARF 337 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE--------------EECCSSCCSEEEECCGGGSCGG--G-TEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec--------------ccccCCcccceEEeccccccee--c-ceeEEE
Confidence 9999998864 55799999999988762 11110 1114577899999999998765 3 779999
Q ss_pred EECCCCce
Q psy9598 749 WDAFNGDL 756 (1915)
Q Consensus 749 wD~~tg~~ 756 (1915)
|++.++.+
T Consensus 338 ~~l~~~~~ 345 (402)
T 2aq5_A 338 YKLHERKC 345 (402)
T ss_dssp EEEETTEE
T ss_pred EEcCCCcE
Confidence 99987653
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.3e-26 Score=292.53 Aligned_cols=289 Identities=11% Similarity=0.003 Sum_probs=226.3
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc---eEEEeec-------------------------------------
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA---PISVLVG------------------------------------- 558 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~---~~~~l~~------------------------------------- 558 (1915)
.+|.+|+|+++|++|++++ ++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 4789999999999777664 7899999999998 6666553
Q ss_pred -----------------CCCCeEEEEeccCccCCCcEE-EEEeCCCeEEEEecc--cCccccceeccCccccccccCCCC
Q psy9598 559 -----------------HQGIITGVNFCPLEVNGFNYL-ASTSTDGCIGFWKYK--LDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 559 -----------------h~~~V~sl~fsp~~~~d~~~L-~sgs~DgtI~iWDl~--~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
|.+.|++++|+|+ +.+| ++|+.||+|++||+. ++..+..+... .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~----------~~~ 149 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSD----ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF----------CFS 149 (450)
T ss_dssp ----------------CCCCCEEEEEECTT----SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE----------ECS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCC----CCEEEEEECCCCeEEEEECcCCCCceeeeeecc----------cCC
Confidence 3337999999995 4675 899999999999998 66544333211 345
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCc-eeEEeccCCCCeeEEEEcCC---CCEEEEEeCCCcEEEEEccC
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPL-GILEVEEHSDKVDSIQWSHS---HLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~-~i~~l~~h~~~V~sl~fspd---g~~L~sgs~DG~I~IWDl~~ 694 (1915)
..|.+++|+|+|.+|++|+.+|.|++|++....... .+..+.+|...|.+|+|+|+ +.+|++|+.|+.|+|||+.+
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 789999999999999999999999999985544332 34466789999999999999 99999999999999999988
Q ss_pred CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC-----------
Q psy9598 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH----------- 763 (1915)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH----------- 763 (1915)
+...... ..+|...|.+++|+ ++.+|++++. |+.|+|||+.+++++..+..+
T Consensus 230 ~~~~~~~---------------~~~h~~~v~~~~~s-d~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (450)
T 2vdu_B 230 CFIVDKW---------------LFGHKHFVSSICCG-KDYLLLSAGG-DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH 292 (450)
T ss_dssp TTCEEEE---------------CCCCSSCEEEEEEC-STTEEEEEES-SSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred Cceeeee---------------ecCCCCceEEEEEC-CCCEEEEEeC-CCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence 7644321 23477889999999 9999999998 999999999999999888733
Q ss_pred --------------CCCeEEEEEccCCCCEEEEEe-cCceEEEEEC--CCCccccceeeeeeecCCCCcceEEEEEcCCC
Q psy9598 764 --------------TNEVFVLESHPFDSRVLLSAG-HDGLIIIWDI--LSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 764 --------------~~~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl--~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg 826 (1915)
...|.+|+|+| ++.+|++++ .|+.|+||++ .++.. +..+. .+.+ ++.|.+++|+|++
T Consensus 293 ~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~--l~~~~-~~~~--~~~v~~~~~~~~~ 366 (450)
T 2vdu_B 293 LAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGD--LALKQ-IITF--PYNVISLSAHNDE 366 (450)
T ss_dssp BC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTC--EEEEE-EEEC--SSCEEEEEEETTE
T ss_pred cccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCc--eeecc-Eecc--CCceEEEEecCCc
Confidence 35789999999 999999998 8999999999 44422 22222 1222 2789999999965
Q ss_pred CEEEEEeC------CCeEEEEeCCC
Q psy9598 827 TTCALTDS------YGHLLVYGLGG 845 (1915)
Q Consensus 827 ~~Lasg~~------dG~I~Iwdl~s 845 (1915)
.++++++. +..|.||.+..
T Consensus 367 ~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 367 FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEecccCCCCCCcceEEEEEEc
Confidence 44444332 44578887653
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=3.4e-26 Score=289.89 Aligned_cols=306 Identities=14% Similarity=0.085 Sum_probs=244.2
Q ss_pred ccCCCeEEEecccC--CceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE-----EEeCCCCCEE
Q psy9598 450 GPLSRSLMISSHKY--SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA-----TLRGCSGEIS 522 (1915)
Q Consensus 450 g~~d~~~~i~~~~~--~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~-----~l~gH~~~I~ 522 (1915)
|+.++...+|..+. ..+.....+..| ..+.+++|+|++.++++++.++.|++||+.+++.+. .+.+|.+.|.
T Consensus 95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~ 173 (433)
T 3bws_A 95 KPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE 173 (433)
T ss_dssp SGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred ccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee
Confidence 33444333443333 455666667666 446699999988888888889999999999999887 4458999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEE-EEEeCCCeEEEEecccCccccc
Q psy9598 523 DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 523 ~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L-~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
+++|++++.++++++.|+.|++||+.++..+..+..|...+.+++|+|++ ..| ++++.|+.|++||+.++..+..
T Consensus 174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR----DLVYCSNWISEDISVIDRKTKLEIRK 249 (433)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT----TEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC----CEEEEEecCCCcEEEEECCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999943 555 5666899999999987754322
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEe--------CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS--------GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--------~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp 673 (1915)
+. +...+.+++|+|+|.+|++++ .||.|++||+... .. .....|...+.+++|+|
T Consensus 250 ~~-------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~---~~-~~~~~~~~~~~~~~~~~ 312 (433)
T 3bws_A 250 TD-------------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE---KL-IDTIGPPGNKRHIVSGN 312 (433)
T ss_dssp CC-------------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT---EE-EEEEEEEECEEEEEECS
T ss_pred ec-------------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC---cE-EeeccCCCCcceEEECC
Confidence 21 125589999999999999888 5889999998432 22 23335667899999999
Q ss_pred CCCE-EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec----------
Q psy9598 674 SHLR-FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---------- 742 (1915)
Q Consensus 674 dg~~-L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---------- 742 (1915)
++.. +++++.|+.|++||+.+++..... .+...+.+++|+|+|.+|++++..
T Consensus 313 ~g~~l~~~~~~~~~v~v~d~~~~~~~~~~-----------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 375 (433)
T 3bws_A 313 TENKIYVSDMCCSKIEVYDLKEKKVQKSI-----------------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLK 375 (433)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEE-----------------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTS
T ss_pred CCCEEEEEecCCCEEEEEECCCCcEEEEe-----------------cCCCCCCeEEEcCCCCEEEEEecCCCcccccccc
Confidence 9975 566789999999999987644321 134568899999999999988763
Q ss_pred ----CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEec-CceEEEEECCC
Q psy9598 743 ----NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-DGLIIIWDILS 796 (1915)
Q Consensus 743 ----Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~-DG~I~IWdl~s 796 (1915)
||.|++||+.+++.+..+.++ ..+.+++|+| ++.+|++++. ||.|+||++..
T Consensus 376 ~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 376 KGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred ccccceEEEEEECCCCcEEEEecCC-CCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 469999999999999988874 4689999999 8998888775 99999999863
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.7e-27 Score=322.38 Aligned_cols=262 Identities=22% Similarity=0.297 Sum_probs=215.3
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC--CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeE
Q psy9598 511 LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 588 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~--tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI 588 (1915)
+.++.||.+.|++++|+|++.+|++|+.||+|+|||+. ++..+..+.+|.+.|++++|+|.. ++.+|++|+.||+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKV 79 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT--SCSEEEEEETTSCE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC--CCCEEEEEeCCCeE
Confidence 45678999999999999999999999999999999998 567788899999999999999852 36899999999999
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCe
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKV 666 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V 666 (1915)
++||+.++.... ...+..|...|.+++|+|+ +.+|++|+.||.|++||+.... ......+.+|...|
T Consensus 80 ~vwd~~~~~~~~----------~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~-~~~~~~~~~~~~~v 148 (753)
T 3jro_A 80 LIWKEENGRWSQ----------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-TTSPIIIDAHAIGV 148 (753)
T ss_dssp EEEEEETTEEEE----------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS-CCCCEEEECCSSCE
T ss_pred EEEECCCCcccc----------cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC-CcceeEeecCCCce
Confidence 999998764211 1223457789999999999 9999999999999999995432 23445678899999
Q ss_pred eEEEEcC-------------CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC-
Q psy9598 667 DSIQWSH-------------SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS- 732 (1915)
Q Consensus 667 ~sl~fsp-------------dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd- 732 (1915)
.+++|+| ++.+|++|+.||.|++||++++..... .......|...|++++|+|+
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~------------~~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------LESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEE------------EEEEECCCSSCEEEEEECCCC
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccce------------eeeeecCCCCcEEEEEeccCC
Confidence 9999999 589999999999999999987642211 11123457789999999999
Q ss_pred --CCEEEEEEecCCeEEEEECCCCc-----eEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 733 --DRWVITAINFNFQIKIWDAFNGD-----LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 733 --g~~L~t~s~~Dg~I~vwD~~tg~-----~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+.+|++++. ||.|++||+.++. .+....+|.+.|++++|+| ++.+|++|+.||.|+||++.++..
T Consensus 217 ~~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 217 LLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp SSSEEEEEEES-SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSSSC
T ss_pred CCCCEEEEEec-CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCCCC
Confidence 889999888 9999999998864 3344456889999999999 999999999999999999986543
No 127
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=6.3e-25 Score=274.18 Aligned_cols=330 Identities=10% Similarity=0.024 Sum_probs=249.7
Q ss_pred cccccCCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEE-EEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEE
Q psy9598 447 EYSGPLSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVI-VTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 525 (1915)
Q Consensus 447 ~~tg~~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~L-aTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~La 525 (1915)
.++++.++.+.+|+... .+....+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++++..+..|. .|.+++
T Consensus 5 ~vs~~~d~~v~v~d~~~--~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 5 YIANSESDNISVIDVTS--NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEETTTTEEEEEETTT--TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEcCCCCEEEEEECCC--CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 35677889999997643 34555677774 58999999999987 667789999999999999999988665 899999
Q ss_pred EeCCCCEEEEE-eCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEE-EEEeCCCeEEEEecccCcccccee
Q psy9598 526 IDNRNILLAAG-TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 526 fspdg~~LaSg-s~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L-~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
|+|++++|+++ +.++.|++||+.+++.+..+..| ..+.+++|+|++ ..| ++++.++.|++||+.++..+..+.
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg----~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 155 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG----KKLYVTNNGDKTVSVINTVTKAVINTVS 155 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC----CEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence 99999987554 56799999999999988888755 468999999943 555 788889999999998875443332
Q ss_pred ccCccccccccCCCCCceEEEEECCCCcEE-EEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSPGGLFL-ATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fspdg~~L-asgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs 682 (1915)
. ...+.+++|+|+|..| ++++.++.|++||+.. ...+..+ .+...+.+++|+|+|.+|++++
T Consensus 156 ~-------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 156 V-------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---NSVIDTV-KVEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp C-------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEE-ECSSEEEEEEECTTSSEEEEEE
T ss_pred c-------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---CeEEEEE-ecCCCccceEECCCCCEEEEEe
Confidence 2 2457899999999877 6778899999999843 2333333 4567899999999999999888
Q ss_pred ---CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE
Q psy9598 683 ---RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV 759 (1915)
Q Consensus 683 ---~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~ 759 (1915)
.++.|++||+.+++...... ....+.+++|+|+|.+|++++..|+.|++||+.+++++..
T Consensus 219 ~~~~~~~v~~~d~~~~~~~~~~~-----------------~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTNKITARIP-----------------VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp ECSSCCEEEEEETTTTEEEEEEE-----------------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCcCCCcEEEEECCCCeEEEEEe-----------------cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 68999999998876443221 1224688999999999976665599999999999999999
Q ss_pred eeCCCCCeE---EEE------------EccC-C------C--CEEEEEecCceEEEEECCCCccccceeeeeeecCCCCc
Q psy9598 760 LKGHTNEVF---VLE------------SHPF-D------S--RVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEG 815 (1915)
Q Consensus 760 l~gH~~~V~---sl~------------~sp~-d------g--~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~ 815 (1915)
+..|..+.. .+. |+.. . . -.|...+.|..+++|++..+.. . ....
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~--~---------~~~~ 350 (391)
T 1l0q_A 282 MAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS--S---------KKQN 350 (391)
T ss_dssp EECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE--E---------CSSS
T ss_pred EECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc--c---------CcCC
Confidence 887765421 112 2210 0 1 2355666788999999987654 1 0111
Q ss_pred ceEEEEEcCCCCEEEEE
Q psy9598 816 ALFDGKWSPDGTTCALT 832 (1915)
Q Consensus 816 ~V~~vafSpdg~~Lasg 832 (1915)
....|+++|.+.+..
T Consensus 351 --~~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 351 --PTHTYSETGIYTVRL 365 (391)
T ss_dssp --CEECCSSCEEEEEEE
T ss_pred --CeEEeCCCceEEEEE
Confidence 235788999887654
No 128
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=7.5e-26 Score=287.61 Aligned_cols=267 Identities=18% Similarity=0.279 Sum_probs=213.7
Q ss_pred EEecCCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCC----------CcEEEEEeCCCCCEEEEEEeCCCC-EEEEEe
Q psy9598 470 YVNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRARD----------GKLLATLRGCSGEISDIAIDNRNI-LLAAGT 537 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~t----------g~~~~~l~gH~~~I~~Lafspdg~-~LaSgs 537 (1915)
..+.+|.+.|++|+|+|+ +.+||+|+.||.|+||++.+ +..+..+.+|...|++|+|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 456689999999999997 78999999999999999987 678889999999999999999988 999999
Q ss_pred CCCcEEEEECCCCce-------EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccc
Q psy9598 538 VDKTIRIWNLQTLAP-------ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 610 (1915)
Q Consensus 538 ~DgtIrVWDl~tg~~-------~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~ 610 (1915)
.||+|+||++.++.. ...+.+|...|.+++|+|. ++.+|++++.||.|++||++++.....
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~---~~~~l~s~~~dg~i~i~d~~~~~~~~~--------- 269 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL---HESLFGSVADDQKLMIWDTRNNNTSKP--------- 269 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS---CTTEEEEEETTSEEEEEETTCSCSSSC---------
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC---CCCEEEEEeCCCeEEEEECCCCCCCcc---------
Confidence 999999999987432 4567789999999999994 358999999999999999987631111
Q ss_pred ccccCCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEE
Q psy9598 611 NERIRPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTAL 688 (1915)
Q Consensus 611 ~~~~~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~ 688 (1915)
...+..|...|.+++|+|++. +|++|+.||.|+|||++... ..+..+.+|...|.+|+|+|++. +|++|+.||.|+
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~ 347 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 347 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence 112235678899999999987 68899999999999996432 45667788999999999999985 699999999999
Q ss_pred EEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCC
Q psy9598 689 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 689 IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I~vwD~~t 753 (1915)
|||+............. ...........+|...|.+++|+|++. +|++++. ||.|+||++..
T Consensus 348 iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-dg~i~iw~~~~ 410 (430)
T 2xyi_A 348 VWDLSKIGEEQSTEDAE--DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE-DNIMQVWQMAE 410 (430)
T ss_dssp EEEGGGTTCCCCHHHHH--HCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET-TSEEEEEEECH
T ss_pred EEeCCCCccccCccccc--cCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC-CCCEEEeEccc
Confidence 99998632110000000 000012223455778899999999999 6777766 99999999864
No 129
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.2e-26 Score=281.63 Aligned_cols=275 Identities=14% Similarity=0.039 Sum_probs=209.7
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC---------CCce
Q psy9598 482 VLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ---------TLAP 552 (1915)
Q Consensus 482 vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~---------tg~~ 552 (1915)
..+.+++.+|++|+.||+|+|||+.+++.+..+. ...|.++.|+|+ |++|+.|++|++|+.. ++..
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3445678999999999999999999999888886 567888899988 9999999999999665 5554
Q ss_pred EEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 553 ISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 553 ~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
+..+. +|.+.|.+++|+|.. ++.+|++|+.||+|++||+.++....... ..+...|.+++|+|+|.
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----------~~~~~~i~~~~~~pdg~ 183 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEV--NTEYFIWADNRGTIGFQSYEDDSQYIVHS-----------AKSDVEYSSGVLHKDSL 183 (343)
T ss_dssp EEEEECCCSSCEEEEECCC-----CCEEEEEETTCCEEEEESSSSCEEEEEC-----------CCSSCCCCEEEECTTSC
T ss_pred eEEeecCCCCCEEEEEcCCCC--CCCEEEEEeCCCcEEEEECCCCcEEEEEe-----------cCCCCceEEEEECCCCC
Confidence 55544 677899999999921 24899999999999999999876422111 12345699999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCCCcee-EEecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 632 FLATGSGDHHVRVYKMDGVDSPLGI-LEVEE-HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~~~~~~~~i-~~l~~-h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
+|++|+.||.|+|||+... ..+ ..+.+ |.+.|.+|+|+|+|.+|++++ |+.|+|||+++........
T Consensus 184 ~lasg~~dg~i~iwd~~~~---~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~------- 252 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSP---DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP------- 252 (343)
T ss_dssp EEEEECTTSCEEEEESSCT---TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC-------
T ss_pred EEEEEcCCCEEEEEECCCC---CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec-------
Confidence 9999999999999999543 233 45666 999999999999999999999 5599999998876321110
Q ss_pred CCccccccccccccE--EEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccC--CCCEEEEEec
Q psy9598 710 HTKETSDETNKKIKV--TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPF--DSRVLLSAGH 785 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V--~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~--dg~~LaSgs~ 785 (1915)
....+...+ .+++|+|+|.+|++++..|+.|+||++.+....... ..+..++|++. +...|++++.
T Consensus 253 ------~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~ 322 (343)
T 3lrv_A 253 ------TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCG 322 (343)
T ss_dssp ------CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEE
T ss_pred ------ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEec
Confidence 000111222 579999999999998766899999998765443333 45667777752 5568999999
Q ss_pred CceEEEEECC
Q psy9598 786 DGLIIIWDIL 795 (1915)
Q Consensus 786 DG~I~IWdl~ 795 (1915)
||.+.++-..
T Consensus 323 d~~~~~~~~~ 332 (343)
T 3lrv_A 323 DGGIAAILKT 332 (343)
T ss_dssp TTEEEEEEEC
T ss_pred CCceEEEEec
Confidence 9999887543
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=6.3e-25 Score=286.66 Aligned_cols=356 Identities=12% Similarity=0.052 Sum_probs=267.6
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC--CCCceEEEeecCC
Q psy9598 483 LFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL--QTLAPISVLVGHQ 560 (1915)
Q Consensus 483 afspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl--~tg~~~~~l~~h~ 560 (1915)
+|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|+|++|++++.|++|.+||+ .+++++..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 3789999999999999999999999999999984333 899999999999999999999999999 8899988887 45
Q ss_pred CCeEEEEecc----CccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc-EEE
Q psy9598 561 GIITGVNFCP----LEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL-FLA 634 (1915)
Q Consensus 561 ~~V~sl~fsp----~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~-~La 634 (1915)
..+.+++|+| ++ ++|++++ .+++|.+||..++..+..+...........+ .....+.++.++|++. +++
T Consensus 222 ~~p~~va~sp~~~~dg----~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~-~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 222 IEARSVESSKFKGYED----RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY-HPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp SEEEEEEECCSTTCTT----TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE-ESCCCEEEEEECSSSSEEEE
T ss_pred CCcceEEeCCCcCCCC----CEEEEEEccCCeEEEEeccccccceeecccCcccCcccc-ccCCceEEEEECCCCCEEEE
Confidence 5679999998 54 7888877 5899999999888765554432100000000 0123688999999765 566
Q ss_pred EEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCcc
Q psy9598 635 TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 713 (1915)
Q Consensus 635 sgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~ 713 (1915)
++..++.|.+||+..... ..+..+ .+...+.+++|+|+|++|++++ .+++|.+||+.++++..... ..
T Consensus 297 s~~~~g~i~vvd~~~~~~-l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~-~g-------- 365 (543)
T 1nir_A 297 NVKETGKVLLVNYKDIDN-LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD-VG-------- 365 (543)
T ss_dssp EETTTTEEEEEECTTSSS-CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE-CS--------
T ss_pred EECCCCeEEEEEecCCCc-ceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec-cC--------
Confidence 777889999999954322 222233 3567788999999999876554 68999999999988654321 00
Q ss_pred ccccccccccEEEEEECCCCCEEE-EEEecCCeEEEEECCC-------CceEEEeeCCCCCeEEEEEccCCCCEEEEEe-
Q psy9598 714 TSDETNKKIKVTMVAWDASDRWVI-TAINFNFQIKIWDAFN-------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAG- 784 (1915)
Q Consensus 714 ~~~~~~~~~~V~~va~spdg~~L~-t~s~~Dg~I~vwD~~t-------g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs- 784 (1915)
...|......+ ++|++..++ ++...|++|.|||+.+ ++++.++.+|.+.+..|++|| ++++|++++
T Consensus 366 ---~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~ 440 (543)
T 1nir_A 366 ---KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTT 440 (543)
T ss_dssp ---SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCT
T ss_pred ---CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecC
Confidence 11122222223 467744444 4432389999999998 899999999999999999999 999999987
Q ss_pred ------cCceEEEEECCCCccccc-eeeeeee----cCCCCcceEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCcc
Q psy9598 785 ------HDGLIIIWDILSSKQRGY-KWFHNIV----EGQGEGALFDGKWSPDGTTCALTD-----SYGHLLVYGLGGFKR 848 (1915)
Q Consensus 785 ------~DG~I~IWdl~s~~~~~~-~~~~~~~----~~~~~~~V~~vafSpdg~~Lasg~-----~dG~I~Iwdl~s~~~ 848 (1915)
.+++|.|||+.+++. . ..+. +- ...+...+..+.|+|+|+.|+++. .++.|.|||..++++
T Consensus 441 ~~~~~~~~~~v~v~d~~~~~~--~~~~~~-v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKNLDA--KYQVLP-IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp TCSSHHHHTCEEEEETTCTTS--CCEEEC-HHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CCCCcccCceEEEEECCCCCC--CeEEee-chhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 378999999999887 4 2221 10 023356899999999999998773 379999999999999
Q ss_pred cccCCCceeecCCCCe
Q psy9598 849 PQNIPRELFFHTDYRT 864 (1915)
Q Consensus 849 ~~~l~~~~~F~~d~~~ 864 (1915)
...++..-.+.|+|.+
T Consensus 518 ~~~i~~~~~~~p~g~~ 533 (543)
T 1nir_A 518 KAVVKDPRLITPTGKF 533 (543)
T ss_dssp EEEECCTTCCSEEEEE
T ss_pred EEeecCCCccCCCeee
Confidence 9888875555565554
No 131
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.1e-25 Score=282.51 Aligned_cols=264 Identities=14% Similarity=0.090 Sum_probs=173.7
Q ss_pred cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC--------C
Q psy9598 558 GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP--------G 629 (1915)
Q Consensus 558 ~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp--------d 629 (1915)
.|...+....+.+ ++.+|++|+.|++|++||+.++....... ...+.+|...|++++|+| +
T Consensus 87 ~~~~~~~~~~~~~----~~~~las~~~d~~v~lw~~~~~~~~~~~~-------~~~~~gH~~~v~~v~~~p~~~~~~~~d 155 (393)
T 4gq1_A 87 LHDGDGNVNSSPV----YSLFLACVCQDNTVRLIITKNETIITQHV-------LGGKSGHHNFVNDIDIADVYSADNRLA 155 (393)
T ss_dssp ----------CCE----EEEEEEEEETTSCEEEEEEETTEEEEEEE-------ECTTTSCSSCEEEEEEEEEECTTCSEE
T ss_pred ccCCCcceeecCC----CCCEEEEEeCCCcEEEEECCCCccceeee-------ecccCCCCCceEEEEEccccccccCCC
Confidence 3444444455555 34899999999999999998775432221 224567899999999998 7
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccC
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~ 708 (1915)
|.+||+|+.|++|+|||+. ....+..+.+|...|.+++|+|++. +|++|+.||+|++||+.+++............
T Consensus 156 ~~~las~s~D~tv~~Wd~~---~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~ 232 (393)
T 4gq1_A 156 EQVIASVGDDCTLIIWRLT---DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK 232 (393)
T ss_dssp EEEEEEEETTSEEEEEEEE---TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred CCEEEEEECCCeEEEEECC---CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence 8999999999999999994 3345666778999999999999875 79999999999999999876433221110000
Q ss_pred ---------CCCccccccccccccEEEEEEC-CCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEc-----
Q psy9598 709 ---------PHTKETSDETNKKIKVTMVAWD-ASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH----- 773 (1915)
Q Consensus 709 ---------~~~~~~~~~~~~~~~V~~va~s-pdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~s----- 773 (1915)
..........++...+.++.|+ +++..|++++. |+.+++||+.++.....+.+|...+..+.+.
T Consensus 233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~-d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 311 (393)
T 4gq1_A 233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK-SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQG 311 (393)
T ss_dssp CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECT-TSEEEEEEC-------------------CCSCSEEE
T ss_pred cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeC-CCCEEEEECccCCCCceEeeecCccccEEEcccccc
Confidence 0000112234567788899986 79999999988 9999999999888777777776655544333
Q ss_pred -------------cC-CCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy9598 774 -------------PF-DSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLL 839 (1915)
Q Consensus 774 -------------p~-dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~ 839 (1915)
|. ++.++++|+.||+|+|||+.++.. ...+. .+..+|.+++|||||++||+++.+| +.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~-----~~~~~V~svafspdG~~LA~as~~G-v~ 383 (393)
T 4gq1_A 312 ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPI-----QLGMPIVDFCWHQDGSHLAIATEGS-VL 383 (393)
T ss_dssp ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEE-----ECSSCEEEEEECTTSSEEEEEESSE-EE
T ss_pred ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEec-----CCCCcEEEEEEcCCCCEEEEEeCCC-eE
Confidence 22 344677888999999999999887 44443 4567999999999999999998765 55
Q ss_pred EEeCC
Q psy9598 840 VYGLG 844 (1915)
Q Consensus 840 Iwdl~ 844 (1915)
+|.+.
T Consensus 384 lvrL~ 388 (393)
T 4gq1_A 384 LTRLM 388 (393)
T ss_dssp EEEEG
T ss_pred EEEEe
Confidence 55544
No 132
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=4.9e-26 Score=285.79 Aligned_cols=276 Identities=13% Similarity=0.071 Sum_probs=189.9
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE-----EEeCCCCCEEEEEEeC--------CCCEEEEEeC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA-----TLRGCSGEISDIAIDN--------RNILLAAGTV 538 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~-----~l~gH~~~I~~Lafsp--------dg~~LaSgs~ 538 (1915)
..+|...+....+++++.+||+|+.|++|+|||+.++.... .+.||.+.|++|+|+| ++++|||||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 34566666667777888899999999999999999886543 4679999999999998 7899999999
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc-------------
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH------------- 605 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~------------- 605 (1915)
|++|+|||+.++.++..+.+|...|.+++|+|.. ..+|++|+.||+|++||+.++.........
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~---~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSN---PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTE---EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCC---CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 9999999999999998899999999999999943 468999999999999999887643322111
Q ss_pred CccccccccCCCCCceEEEEEC-CCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC
Q psy9598 606 EPVMFNERIRPGNAHILCSSFS-PGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fs-pdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D 684 (1915)
.+........+|...+.++.|+ ++|..|++++.|+.|++||+... .....+..|...+..+.+.+++..+...
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 315 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN---NDYNEISDSTMKLGPKNLLPNVQGISLF--- 315 (393)
T ss_dssp GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSS---
T ss_pred ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC---CCCceEeeecCccccEEEcccccccccc---
Confidence 0111112234677888999987 79999999999999999999432 2334455677677776666653321110
Q ss_pred CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC
Q psy9598 685 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 685 G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
...+..+.+.+.+..++++++.||.|+|||+.++.++..+.+|.
T Consensus 316 ------------------------------------~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~ 359 (393)
T 4gq1_A 316 ------------------------------------PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG 359 (393)
T ss_dssp ------------------------------------CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred ------------------------------------CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 11112233334455555555559999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
..|.+|+|+| +|++||+++.+| |.+|.+
T Consensus 360 ~~V~svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 360 MPIVDFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred CcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 9999999999 999999998776 556655
No 133
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-25 Score=276.80 Aligned_cols=278 Identities=8% Similarity=-0.001 Sum_probs=211.4
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec
Q psy9598 525 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 604 (1915)
Q Consensus 525 afspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~ 604 (1915)
.+.+++.+|++|+.||+|+|||+.+++.+..+. ...|.++.|+| . +++|+.|++|++|+......+. ..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~------~-~~s~s~D~~i~~w~~~~~~~~~--~~ 111 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP------A-IISRGPCNRLLLLYPGNQITIL--DS 111 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC------S-EEEECSTTEEEEEETTTEEEEE--ET
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC------c-eEEecCCCeEEEEEccCceEEe--ec
Confidence 345678899999999999999999999988886 56788888988 2 9999999999999877532111 11
Q ss_pred cCccccccccCCCCCceEEEEECC--CCcEEEEEeCCCeEEEEEecCCCCCceeEEe-ccCCCCeeEEEEcCCCCEEEEE
Q psy9598 605 HEPVMFNERIRPGNAHILCSSFSP--GGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHSDKVDSIQWSHSHLRFVSG 681 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~V~~l~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-~~h~~~V~sl~fspdg~~L~sg 681 (1915)
............|...|.+++|+| ++.+|++|+.||.|++||+... ..+... ..|...|.+++|+|+|.+|++|
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD---SQYIVHSAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS---CEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC---cEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 111111122235667899999999 9999999999999999999532 333333 3456689999999999999999
Q ss_pred eCCCcEEEEEccCCceEEeeecccccCCCCccccccc-cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe
Q psy9598 682 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET-NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 760 (1915)
Q Consensus 682 s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l 760 (1915)
+.||.|+|||++++..... ... .|...|++++|+|+|.+|++++. +.|++||++++..+..+
T Consensus 189 ~~dg~i~iwd~~~~~~~~~---------------~~~~~h~~~v~~l~fs~~g~~l~s~~~--~~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASS---------------RFPVDEEAKIKEVKFADNGYWMVVECD--QTVVCFDLRKDVGTLAY 251 (343)
T ss_dssp CTTSCEEEEESSCTTSCCE---------------ECCCCTTSCEEEEEECTTSSEEEEEES--SBEEEEETTSSTTCBSS
T ss_pred cCCCEEEEEECCCCCCCcc---------------EEeccCCCCEEEEEEeCCCCEEEEEeC--CeEEEEEcCCCCcceee
Confidence 9999999999998763210 112 36789999999999999999984 49999999998876665
Q ss_pred eC---CCCCeE--EEEEccCCCCEEEEEec-CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC---CCCEEEE
Q psy9598 761 KG---HTNEVF--VLESHPFDSRVLLSAGH-DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP---DGTTCAL 831 (1915)
Q Consensus 761 ~g---H~~~V~--sl~~sp~dg~~LaSgs~-DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp---dg~~Las 831 (1915)
.. |...+. +++|+| ++.+|++|+. |+.|+||++..... . +. ..++..++|++ ++..|++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~--~--~~-------~~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTK--N--WT-------KDEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp CCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTC--S--EE-------EEEEEECCC----CCCCEEEE
T ss_pred cccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEccccc--c--eE-------ecCceeEecCccccccceeEE
Confidence 54 444444 699999 9999999998 99999999976654 2 11 04577888988 8999999
Q ss_pred EeCCCeEEEEeCCC
Q psy9598 832 TDSYGHLLVYGLGG 845 (1915)
Q Consensus 832 g~~dG~I~Iwdl~s 845 (1915)
++.||.+.++-...
T Consensus 320 ~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 320 VCGDGGIAAILKTN 333 (343)
T ss_dssp EEETTEEEEEEECS
T ss_pred EecCCceEEEEecC
Confidence 99999998885443
No 134
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=5.3e-24 Score=253.79 Aligned_cols=301 Identities=15% Similarity=0.129 Sum_probs=214.0
Q ss_pred CceeeeEEecCCCCc----EEEEEEcCCCC---EEEEEECCCcEEEEECCCC---cEEEEEeCCCCCEEEEEEeCCCCEE
Q psy9598 464 SNLRQHYVNLGHLSA----VFCVLFDKLGE---VIVTGADDLLIKLWRARDG---KLLATLRGCSGEISDIAIDNRNILL 533 (1915)
Q Consensus 464 ~~~~~~~~l~gH~~~----V~~vafspdg~---~LaTGs~Dg~I~IWd~~tg---~~~~~l~gH~~~I~~Lafspdg~~L 533 (1915)
.+++++..|..-.+. |.++-|-.-|- .|++++.. .|++|+..++ ++++++.+|..+|..|.|.||..-|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL 101 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce
Confidence 345555566543332 34444544333 57777765 9999999999 8999999999999999999985433
Q ss_pred EEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccc
Q psy9598 534 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 534 aSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
+... .=.-+...|.+|+|+|+...-+.++++++.+ +.+|++.
T Consensus 102 ~~~~-----------------~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~------------------- 143 (356)
T 2w18_A 102 VCVA-----------------LGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT------------------- 143 (356)
T ss_dssp EEEE-----------------ECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEET-------------------
T ss_pred eeee-----------------eccccccceEEEEECCCccccccEEEeCCCe--EEEEecC-------------------
Confidence 3211 1112566889999999522225889998844 7777643
Q ss_pred cCCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC---CCCEEEEEeCCCcEE
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH---SHLRFVSGSRDGTAL 688 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs--~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp---dg~~L~sgs~DG~I~ 688 (1915)
+|+++.+++ .|+.|++|++.. ....+..+.+|...+..++|++ ++.+|++|+.|++|+
T Consensus 144 ---------------~g~lv~ss~~g~d~~V~~~~~s~--dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk 206 (356)
T 2w18_A 144 ---------------KRRLVSSSGTLSDQQVEVMTFAE--DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIV 206 (356)
T ss_dssp ---------------TTEEEEEESSSTTCEEEEEEECT--TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEE
T ss_pred ---------------CCcEEEecccCCCCcEEEEEECC--CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEE
Confidence 333444433 588999999832 2345667778999999999999 779999999999999
Q ss_pred EEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEE-----------EEecCCeEEEEECCCCceE
Q psy9598 689 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT-----------AINFNFQIKIWDAFNGDLV 757 (1915)
Q Consensus 689 IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t-----------~s~~Dg~I~vwD~~tg~~i 757 (1915)
|||+.+++++..... ...+...+.+++|+|+|.++++ +++.|++|++||..++.++
T Consensus 207 IWDl~TGk~l~tL~g-------------~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l 273 (356)
T 2w18_A 207 IWNLKTGQLLKKMHI-------------DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV 273 (356)
T ss_dssp EEETTTCCEEEEEEC-------------CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEE
T ss_pred EEECCCCcEEEEEcC-------------CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE
Confidence 999999987664321 0112346788899999988743 2334999999999999988
Q ss_pred EEe-----eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCc-ceEEEEEcCCCCEEEE
Q psy9598 758 QVL-----KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEG-ALFDGKWSPDGTTCAL 831 (1915)
Q Consensus 758 ~~l-----~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~-~V~~vafSpdg~~Las 831 (1915)
.++ .+|...+.+..+ ++.++++|+.||+|+|||+.++++ +..+. .|.. .+..++|||||++||+
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~--l~tL~-----gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQC--TALLP-----PVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSE--EEEEC-----CC--CCCCEEEECSSSSEEEE
T ss_pred EEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcE--EEEec-----CCCCCeEEEEEECCCCCEEEE
Confidence 776 478776555444 368999999999999999999998 66654 3334 4456899999999999
Q ss_pred EeCCCeEEEEeC
Q psy9598 832 TDSYGHLLVYGL 843 (1915)
Q Consensus 832 g~~dG~I~Iwdl 843 (1915)
|+.|++|+||++
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999985
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=6.1e-24 Score=300.07 Aligned_cols=369 Identities=14% Similarity=0.079 Sum_probs=275.7
Q ss_pred CeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECC------CcEEEEECCCCcEEEEEeCCCCCE------
Q psy9598 454 RSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADD------LLIKLWRARDGKLLATLRGCSGEI------ 521 (1915)
Q Consensus 454 ~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~D------g~I~IWd~~tg~~~~~l~gH~~~I------ 521 (1915)
+.+.+|...... .+.|.+|...|.+++|||||++||+++.+ ..|.+|++.++. ...+.+|...+
T Consensus 33 ~~l~~~~~~gg~---~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~ 108 (1045)
T 1k32_A 33 DDLWEHDLKSGS---TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMF 108 (1045)
T ss_dssp TEEEEEETTTCC---EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEEC
T ss_pred CcEEEEECCCCc---EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccc
Confidence 456666543332 35678999999999999999999988654 379999998876 57788899888
Q ss_pred -EEEEEeCCCCEEEEEeCC------CcEEEEECCCCceE-----------------------------------------
Q psy9598 522 -SDIAIDNRNILLAAGTVD------KTIRIWNLQTLAPI----------------------------------------- 553 (1915)
Q Consensus 522 -~~Lafspdg~~LaSgs~D------gtIrVWDl~tg~~~----------------------------------------- 553 (1915)
.+++|+|||+++++++.+ ..|.+|++.++...
T Consensus 109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw 188 (1045)
T 1k32_A 109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW 188 (1045)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence 999999999988887754 35778887655422
Q ss_pred --------EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc-cccceeccCccccccccCCCCCceEEE
Q psy9598 554 --------SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 554 --------~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
..+.+|.+.+.++.|++ + .++++++.+|++.+|.+.... ....+ ..+ ..+.++
T Consensus 189 ~~~~~~~~~~l~~~~~~v~~~~~s~----d-~l~~~~~~dg~~~l~~~~~~g~~~~~l------------~~~-~~~~~~ 250 (1045)
T 1k32_A 189 IEVNSGAFKKIVDMSTHVSSPVIVG----H-RIYFITDIDGFGQIYSTDLDGKDLRKH------------TSF-TDYYPR 250 (1045)
T ss_dssp EEEETTEEEEEECCSSCCEEEEEET----T-EEEEEECTTSSCEEEEEETTSCSCEEC------------CCC-CSSCEE
T ss_pred EECCCCCeEECcCCCCcccceEEeC----C-EEEEEEeccCceEEEEEeCCCCcceEe------------cCC-CCccee
Confidence 12345677788888876 2 577778888999999876422 11111 112 235667
Q ss_pred EECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc-----------CCCCeeEEEEc-CCCCEEEEEeCCCcEEEEEc
Q psy9598 625 SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-----------HSDKVDSIQWS-HSHLRFVSGSRDGTALIWYY 692 (1915)
Q Consensus 625 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-----------h~~~V~sl~fs-pdg~~L~sgs~DG~I~IWDl 692 (1915)
+|+|+|.+|+++ .++.|.+|++.. ..+..+.+ |...+.+++|+ |+|.+|++++ ++.|.+|++
T Consensus 251 ~~SpDG~~la~~-~~~~i~~~d~~~----~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 251 HLNTDGRRILFS-KGGSIYIFNPDT----EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp EEEESSSCEEEE-ETTEEEEECTTT----CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred eEcCCCCEEEEE-eCCEEEEecCCc----eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 999999999887 489999999821 22233433 44579999999 9999999887 889999998
Q ss_pred cCCceEEeeecccccCCCCccccccccccc-cEEEEEECCCCCEEEEEEecCCeEE-EEECCCCceEEEeeCCCCCeEEE
Q psy9598 693 KCSQWRFIRLDMNTCLPHTKETSDETNKKI-KVTMVAWDASDRWVITAINFNFQIK-IWDAFNGDLVQVLKGHTNEVFVL 770 (1915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~va~spdg~~L~t~s~~Dg~I~-vwD~~tg~~i~~l~gH~~~V~sl 770 (1915)
..+.... ...+.. .+..++|+ +|..|++++. ++.|. +|++.++..... .+|...+..+
T Consensus 325 ~~~~~~~-----------------~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~l-~~~~~~~~~~ 384 (1045)
T 1k32_A 325 SGTYVLK-----------------VPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEKF-EENLGNVFAM 384 (1045)
T ss_dssp TSSBEEE-----------------CSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCEEEC-CCCCCSEEEE
T ss_pred CCCceEE-----------------ccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCceEe-cCCccceeee
Confidence 7765322 112334 78899999 9999999887 88899 999988766544 4888899999
Q ss_pred EEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCC----------eEEE
Q psy9598 771 ESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYG----------HLLV 840 (1915)
Q Consensus 771 ~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG----------~I~I 840 (1915)
+|+| ++++|++++.++.|++||+.+++. ...+. .+.+.+.+++|||||++||+++.++ .|++
T Consensus 385 ~~Sp-DG~~la~~~~~~~v~~~d~~tg~~--~~~~~-----~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 385 GVDR-NGKFAVVANDRFEIMTVDLETGKP--TVIER-----SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp EECT-TSSEEEEEETTSEEEEEETTTCCE--EEEEE-----CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred EECC-CCCEEEEECCCCeEEEEECCCCce--EEecc-----CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 9999 999999999999999999998876 33332 3567889999999999999887654 8999
Q ss_pred EeCCCCcccccCCC------ceeecCCCCeeeecC-CCccceeecc
Q psy9598 841 YGLGGFKRPQNIPR------ELFFHTDYRTLNRPN-GLFEPTYDEV 879 (1915)
Q Consensus 841 wdl~s~~~~~~l~~------~~~F~~d~~~Lv~~~-~~~~~v~D~~ 879 (1915)
|++.+++ ...+.. .+.|++|++.|+..+ .....+|+..
T Consensus 457 ~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 457 YDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred EECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 9999876 333322 467999999887433 2334456544
No 136
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.92 E-value=4e-25 Score=226.96 Aligned_cols=112 Identities=46% Similarity=0.913 Sum_probs=104.1
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy9598 114 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN 193 (1915)
....|++.|..||+.|++++.++||++||+...+||||+||++||||+||++||+++.|.++++|..||+|||.||+.||
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9598 194 QNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSH 225 (1915)
Q Consensus 194 ~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~ 225 (1915)
++++|.||.+|..|+++|+++|+.+...++..
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~ 118 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFKIG 118 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96459999999999999999999999998643
No 137
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.91 E-value=8e-25 Score=223.06 Aligned_cols=107 Identities=27% Similarity=0.405 Sum_probs=101.6
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q psy9598 113 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~y 192 (1915)
+......+.|..||+.|++++.++||.+|||...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.|
T Consensus 9 ~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (117)
T 3g0l_A 9 RDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETF 88 (117)
T ss_dssp CCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 193 NQNKRSKIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 193 N~~~~s~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
|+++ |.+|.+|..|+++|+++|+++..
T Consensus 89 N~~~-s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 89 NEDD-SDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SCSS-SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 9977 99999999999999999999864
No 138
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.91 E-value=4.7e-25 Score=230.53 Aligned_cols=113 Identities=47% Similarity=0.872 Sum_probs=107.1
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q psy9598 113 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~y 192 (1915)
.....|++.|..||+.|++++.++||.+|||...+||||+||++||||+||++||+++.|.++++|..||+|||.||++|
T Consensus 17 ~~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 96 (135)
T 3mb3_A 17 YDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAY 96 (135)
T ss_dssp CCSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9598 193 NQNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSH 225 (1915)
Q Consensus 193 N~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~ 225 (1915)
|++++|.||.+|..|+++|+++|+.+...++..
T Consensus 97 N~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~ 129 (135)
T 3mb3_A 97 TPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSA 129 (135)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997349999999999999999999999998643
No 139
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.91 E-value=6.8e-25 Score=221.55 Aligned_cols=105 Identities=30% Similarity=0.467 Sum_probs=100.9
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy9598 114 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN 193 (1915)
.+..|...|..||+.|++++.++||++|||..++||||+||++||||+||++||++|.|.++++|.+||+|||.||++||
T Consensus 4 ~~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 83 (112)
T 3d7c_A 4 DPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 194 QNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 194 ~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
+++ |.+|.+|..|++.|+++|+++.
T Consensus 84 ~~~-s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 84 PPD-SEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp CTT-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHCC
Confidence 977 9999999999999999998763
No 140
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=5.8e-23 Score=259.71 Aligned_cols=301 Identities=14% Similarity=0.074 Sum_probs=231.8
Q ss_pred CCcEEEEEEcCCCC-EEEEEE----CCC----cEEEEEC--CCCcEE--EEEeCCCCCEEEEEEeC--------------
Q psy9598 476 LSAVFCVLFDKLGE-VIVTGA----DDL----LIKLWRA--RDGKLL--ATLRGCSGEISDIAIDN-------------- 528 (1915)
Q Consensus 476 ~~~V~~vafspdg~-~LaTGs----~Dg----~I~IWd~--~tg~~~--~~l~gH~~~I~~Lafsp-------------- 528 (1915)
...|...+|++.|. ++++|+ .+| .|+|||+ .+++++ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35677888888774 666886 467 8999999 999887 55889999888888775
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC---eEEEEecccCccc
Q psy9598 529 RNILLAAGTVD------KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG---CIGFWKYKLDIDI 599 (1915)
Q Consensus 529 dg~~LaSgs~D------gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg---tI~iWDl~~~~~~ 599 (1915)
.+..|+.++.+ +.|++||+.. .....+.+|...|.+++|+|+ +..|++++.++ .|++||+.++...
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd----g~~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD----GSKLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT----SSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC----CCEEEEEEecCCCcEEEEEECCCCcEE
Confidence 15566666654 7999999974 556778889999999999994 58999999875 9999999887532
Q ss_pred cceeccCccccccccCCCCCceEEEEECCCCcEEE-EEeCCCe--EEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCC
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA-TGSGDHH--VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL 676 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La-sgs~Dg~--I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~ 676 (1915)
. +..+...+.+++|+|+|+.|+ +++.++. |++||+.+. ....+..|...+.+++|+|+|.
T Consensus 217 ~-------------l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~spdg~ 279 (415)
T 2hqs_A 217 Q-------------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----QIRQVTDGRSNNTEPTWFPDSQ 279 (415)
T ss_dssp E-------------EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC----CEEECCCCSSCEEEEEECTTSS
T ss_pred E-------------eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC----CEEeCcCCCCcccceEECCCCC
Confidence 1 112346789999999999887 6666654 889998432 2356778889999999999999
Q ss_pred EEEEEeC-CC--cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC--CeEEEEEC
Q psy9598 677 RFVSGSR-DG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN--FQIKIWDA 751 (1915)
Q Consensus 677 ~L~sgs~-DG--~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D--g~I~vwD~ 751 (1915)
+|++++. +| .|.+||+.++.... ...+...+.+++|+|+|++|++++..+ +.|++||+
T Consensus 280 ~l~~~s~~~g~~~i~~~d~~~~~~~~-----------------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 280 NLAFTSDQAGRPQVYKVNINGGAPQR-----------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCCEE-----------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred EEEEEECCCCCcEEEEEECCCCCEEE-----------------EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 9988886 45 57777877665221 112345688999999999999988732 58999999
Q ss_pred CCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCc---eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCC
Q psy9598 752 FNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG---LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 752 ~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG---~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg 826 (1915)
.++++. .+..|. .+.+++|+| ++.+|++++.++ .|++||+..+.. ..+. .+.+.|.+++|+|--
T Consensus 343 ~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~~---~~l~-----~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 343 ATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRFK---ARLP-----ATDGQVKFPAWSPYL 409 (415)
T ss_dssp TTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCCE---EECC-----CSSSEEEEEEECCCC
T ss_pred CCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCCcE---EEee-----CCCCCCcCCcccccc
Confidence 988874 455664 899999999 999999888877 899999975433 3332 456889999999964
No 141
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=220.11 Aligned_cols=108 Identities=26% Similarity=0.328 Sum_probs=103.0
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
..+|...|..||+.|++++.++||++|||...+||||+||++||||+||++||+++.|.++++|.+||+|||.||++||+
T Consensus 5 ~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNA 84 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
++ |.+|.+|..|++.|++.|+++....+
T Consensus 85 ~~-s~~~~~A~~L~~~~~~~l~~~~~~~~ 112 (121)
T 2d9e_A 85 KD-TIFYRAAVRLREQGGAVLRQARRQAE 112 (121)
T ss_dssp TT-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 99999999999999999999877654
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.1e-22 Score=276.91 Aligned_cols=340 Identities=9% Similarity=0.012 Sum_probs=243.0
Q ss_pred CCcEEEEEEcCCCCEEEEEEC-CC-----cEEEEECCCCcEEEEEeCCCC------------------------CEEEEE
Q psy9598 476 LSAVFCVLFDKLGEVIVTGAD-DL-----LIKLWRARDGKLLATLRGCSG------------------------EISDIA 525 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~-Dg-----~I~IWd~~tg~~~~~l~gH~~------------------------~I~~La 525 (1915)
...|.+++|||||++|++++. |+ .|.+||+.+++....+.+|.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 467999999999999999998 88 899999999998877765543 388999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCc--eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~--~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
|||||++|++++. +.|++||+.++. .+..+..|...+.+++|+|+ +++|++++ ++.|.+||+.++.......
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPD----G~~la~~~-~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPK----GGFVSFIR-GRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTT----SSEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCC----CCEEEEEe-CCcEEEEecCCCCEEEecc
Confidence 9999999999986 999999999883 44567778889999999994 58888887 4689999998765322111
Q ss_pred ccCcccccc----ccCCCCCceEEEEECCCCcEEEEEeCCC---------------------------------eEEEEE
Q psy9598 604 FHEPVMFNE----RIRPGNAHILCSSFSPGGLFLATGSGDH---------------------------------HVRVYK 646 (1915)
Q Consensus 604 ~~~~~~~~~----~~~~~~~~V~~l~fspdg~~Lasgs~Dg---------------------------------~I~IwD 646 (1915)
......... ........+.+++|||||++|++++.|+ .|.+||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 110000000 0000011247799999999999987765 788888
Q ss_pred ecC-CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-----CCcEEEEEccCCceEEeeecccccCCCCccccccccc
Q psy9598 647 MDG-VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-----DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720 (1915)
Q Consensus 647 l~~-~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-----DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1915)
+.+ .. ...+.....|...+.+++| |+|.+|++++. ++.|.+||+.++.+..+...... ..
T Consensus 270 ~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~------------~~ 335 (741)
T 2ecf_A 270 PAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP------------TW 335 (741)
T ss_dssp SSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS------------SC
T ss_pred CCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC------------Cc
Confidence 854 22 1111111257788999999 99999987764 57799999998876543321100 00
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEEeeCCCCCeEEE-EEccCCCCEEE-EEecCc--eEEEEECC
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQVLKGHTNEVFVL-ESHPFDSRVLL-SAGHDG--LIIIWDIL 795 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~-tg~~i~~l~gH~~~V~sl-~~sp~dg~~La-Sgs~DG--~I~IWdl~ 795 (1915)
...+..++|+|+|++++++.. +|.++||.+. ++. +..+..|...|..+ .|+| +++.|+ +++.++ .++||++.
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSER-TGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECT-TSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCcCCceEECCCCeEEEEecC-CCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEE
Confidence 013356899999997777665 8877777664 455 78888888889887 5999 777665 555555 89999986
Q ss_pred C-CccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCC----CeEEEEeCCCC
Q psy9598 796 S-SKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY----GHLLVYGLGGF 846 (1915)
Q Consensus 796 s-~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~d----G~I~Iwdl~s~ 846 (1915)
. +.. ...+. ....+.+++|||||++|++...+ +.+.+|++.++
T Consensus 413 ~~g~~--~~~l~------~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 413 LQGGQ--PQRLS------KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp TTCCC--CEECC------CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred cCCCC--eeecc------cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 4 433 33332 24567899999999999887554 46889987643
No 143
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=1e-22 Score=242.70 Aligned_cols=272 Identities=12% Similarity=0.003 Sum_probs=190.2
Q ss_pred ccCCCeEEEeccc-CCceeeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeC
Q psy9598 450 GPLSRSLMISSHK-YSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDN 528 (1915)
Q Consensus 450 g~~d~~~~i~~~~-~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafsp 528 (1915)
.+....+.+|... ...+...+++.+|..+|..|+|.||-.-|++..-. .-|...|.+|+|+|
T Consensus 59 ~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~sla~sp 121 (356)
T 2w18_A 59 TACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG-----------------NLEIREIRALFCSS 121 (356)
T ss_dssp EEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-----------------SSSEEEEEEECC--
T ss_pred EeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-----------------cccccceEEEEECC
Confidence 3445678888653 34568889999999999999999976544433211 22456799999999
Q ss_pred C----CCEEEEEeCCCcEEEEECCCCceEEE-eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 529 R----NILLAAGTVDKTIRIWNLQTLAPISV-LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 529 d----g~~LaSgs~DgtIrVWDl~tg~~~~~-l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
+ ++++++++.+ +.||++.+++.+.+ ..+|...|..++|+|++ +.+. ...
T Consensus 122 d~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG----~~~~--------------------s~~ 175 (356)
T 2w18_A 122 DDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG----GGKE--------------------NQF 175 (356)
T ss_dssp ----CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTS----CEEE--------------------EEE
T ss_pred CccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCC----ceee--------------------eec
Confidence 9 9999998844 88897766555544 24455555555554421 2222 111
Q ss_pred ccCccccccccCCCCCceEEEEECC---CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC---CCeeEEEEcCCCCE
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSP---GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS---DKVDSIQWSHSHLR 677 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fsp---dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~---~~V~sl~fspdg~~ 677 (1915)
.|...+..++|++ ++.+|++|+.|++|+|||+ .+...+.++.+|. ..|.+++|+|+|.+
T Consensus 176 ------------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl---~TGk~l~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 176 ------------LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL---KTGQLLKKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp ------------ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET---TTCCEEEEEECCC---CCCEEEEEEETTEE
T ss_pred ------------cCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC---CCCcEEEEEcCCCcceeeeEEEEECCCCCE
Confidence 2345567778888 7799999999999999999 4456677777654 36778899999987
Q ss_pred E------------EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy9598 678 F------------VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745 (1915)
Q Consensus 678 L------------~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~ 745 (1915)
+ ++|+.|++|++||..++..+....-. . ..+|...+.+..++ +.++++++. |++
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~---~--------p~Gh~~~~lsg~~s--g~~lASgS~-DgT 306 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC---L--------PPGQAGRFLEGDVK--DHCAAAILT-SGT 306 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEEC---C--------CTTCCCCEEEEEEE--TTEEEEEET-TSC
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee---c--------cCCCcceeEccccC--CCEEEEEcC-CCc
Confidence 6 56889999999999988765422100 0 11233334444444 778888877 999
Q ss_pred EEEEECCCCceEEEeeCCCCCeE-EEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 746 IKIWDAFNGDLVQVLKGHTNEVF-VLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~~V~-sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
|+|||+.+++++.+|.+|...+. +++|+| ++.+|+||+.|++|+|||+
T Consensus 307 IkIWDl~tGk~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTTCSEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 99999999999999999987665 589999 9999999999999999996
No 144
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.90 E-value=2.7e-24 Score=217.61 Aligned_cols=105 Identities=21% Similarity=0.338 Sum_probs=100.6
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
..++...|..||+.|++++.+++|..|||...+||||+||++||||+||++||++|.|.++++|.+||+|||.||++||+
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 85 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNK 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
++ |.+|.+|..|++.|+++++....
T Consensus 86 ~~-s~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 86 PE-TIYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp SS-SSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 99999999999999999988654
No 145
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.90 E-value=1.8e-24 Score=220.96 Aligned_cols=102 Identities=29% Similarity=0.547 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
++...|..||+.|++++.++||.+|||...+||||+||++||||+||++||++|.|.++++|.+||+|||.||++||+++
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 197 RSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
|.+|.+|..|+++|+++++.+.
T Consensus 93 -s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 93 -TSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp -SHHHHHHHHHHHHHHHHHHTSG
T ss_pred -CHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999873
No 146
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=1.4e-22 Score=264.54 Aligned_cols=321 Identities=15% Similarity=0.108 Sum_probs=242.9
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec--ccCcccccee
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY--KLDIDISKTV 603 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl--~~~~~~~~~~ 603 (1915)
|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+| ++++|++++.|++|.+||+ .++..+..+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~sp----dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA----SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECT----TSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECC----CCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 788999999999999999999999999999984333 88999999 4599999999999999999 6654333222
Q ss_pred ccCccccccccCCCCCceEEEEECC----CCcEEEEEeC-CCeEEEEEecCCCCCceeEEecc----------CCC-Cee
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSP----GGLFLATGSG-DHHVRVYKMDGVDSPLGILEVEE----------HSD-KVD 667 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fsp----dg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~~----------h~~-~V~ 667 (1915)
+...+..++|+| +|++|++++. +++|.|||..+ ...+..+.. |.. .+.
T Consensus 220 -------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t---~~~~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 220 -------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET---LEPKQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp -------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT---CCEEEEEECCEECSSSCCEESCCCEE
T ss_pred -------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc---cccceeecccCcccCccccccCCceE
Confidence 125678999999 9999998884 89999999843 334444432 223 789
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 668 SIQWSHSHLR-FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 668 sl~fspdg~~-L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
++.+++++.. ++++..+|.|.+||+.+....... ...+...+..++|+|+|++|++++..+++|
T Consensus 284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~---------------~i~~~~~~~~~~~spdg~~l~va~~~~~~v 348 (543)
T 1nir_A 284 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT---------------SIGAAPFLHDGGWDSSHRYFMTAANNSNKV 348 (543)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE---------------EEECCSSCCCEEECTTSCEEEEEEGGGTEE
T ss_pred EEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE---------------EeccCcCccCceECCCCCEEEEEecCCCeE
Confidence 9999997764 566778899999999876532210 001233456789999999998887668999
Q ss_pred EEEECCCCceEEEeeC----CCCCeEEEEEccCCCCEEEEEe-cCceEEEEECCC-------CccccceeeeeeecCCCC
Q psy9598 747 KIWDAFNGDLVQVLKG----HTNEVFVLESHPFDSRVLLSAG-HDGLIIIWDILS-------SKQRGYKWFHNIVEGQGE 814 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~g----H~~~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl~s-------~~~~~~~~~~~~~~~~~~ 814 (1915)
.+||+.+++++..+.. |.+....+ ++|..+.+++|++ .|++|.|||+.+ .++ +..+. .+.
T Consensus 349 ~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~--v~~l~-----~~g 420 (543)
T 1nir_A 349 AVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK--VAELQ-----GQG 420 (543)
T ss_dssp EEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE--EEEEE-----CSC
T ss_pred EEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE--EEEEE-----cCC
Confidence 9999999999998874 65544443 5773477777776 689999999988 444 55544 233
Q ss_pred cceEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCccc-ccC--------------CCceeecCCCCeeeec----
Q psy9598 815 GALFDGKWSPDGTTCALTD-------SYGHLLVYGLGGFKRP-QNI--------------PRELFFHTDYRTLNRP---- 868 (1915)
Q Consensus 815 ~~V~~vafSpdg~~Lasg~-------~dG~I~Iwdl~s~~~~-~~l--------------~~~~~F~~d~~~Lv~~---- 868 (1915)
+.+..++|+|+|++|++++ .+++|.|||+.+++.. ..+ +.++.|++|++.+...
T Consensus 421 ~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~ 500 (543)
T 1nir_A 421 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 500 (543)
T ss_dssp SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence 5678899999999999987 3679999999998876 333 1278899999988743
Q ss_pred --CCCccceeecccCCCCCcCCCC
Q psy9598 869 --NGLFEPTYDEVTNLPPHLMPPP 890 (1915)
Q Consensus 869 --~~~~~~v~D~~t~~~p~~~~~p 890 (1915)
..+-+.|||..|.......+++
T Consensus 501 ~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 501 KNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCCeEEEEECCCceEEEeecCC
Confidence 1355779999998666555444
No 147
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.90 E-value=2e-24 Score=229.58 Aligned_cols=108 Identities=28% Similarity=0.517 Sum_probs=101.2
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCC--CCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9598 113 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 190 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~--~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~ 190 (1915)
+....++..|..||+.|++++.++||++|||.. ++||||+||++||||+||++||+++.|.++++|..||+|||.||+
T Consensus 28 r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 28 RVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp CCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 445678888999999999999999999999955 899999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 191 NYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 221 (1915)
Q Consensus 191 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 221 (1915)
+||+++ +.||.+|..|+++|+++|+.+...
T Consensus 108 ~YN~~~-s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 108 IYNKPT-DDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HHSCTT-SHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHCCch
Confidence 999976 999999999999999999987544
No 148
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.90 E-value=3.2e-24 Score=220.22 Aligned_cols=114 Identities=45% Similarity=0.903 Sum_probs=104.1
Q ss_pred CchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhc
Q psy9598 1529 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608 (1915)
Q Consensus 1529 ~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN 1608 (1915)
....|+++|..||+.|++++.++||+.||+..++||||++|++||||+||++||.+|.|.++++|..||+|||.||+.||
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy9598 1609 QNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSHKN 1642 (1915)
Q Consensus 1609 ~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~~~ 1642 (1915)
++++|.||.+|..|+++|+++++++...++...+
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~~~ 120 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFKIGQK 120 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8734999999999999999999999998875543
No 149
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.90 E-value=2.6e-24 Score=218.95 Aligned_cols=102 Identities=30% Similarity=0.474 Sum_probs=97.5
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
..++.+.|..||+.|++++.++||.+|||...+||||+||++||||+||++||+++.|.++++|..||+|||.||++||+
T Consensus 14 ~~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 93 (116)
T 3nxb_A 14 LDDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93 (116)
T ss_dssp -CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRR 217 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~ 217 (1915)
++ |.||.+|..|+++|++.|.+
T Consensus 94 ~~-s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 94 ES-SEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHHHHHhh
Confidence 77 99999999999999999864
No 150
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=2.1e-24 Score=221.42 Aligned_cols=105 Identities=24% Similarity=0.368 Sum_probs=99.5
Q ss_pred CchhHHHHHHHHHHHHhcCC------CCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q psy9598 114 RPFNWKNECREVLETLWVCP------DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFH 187 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~------~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~ 187 (1915)
.+..+.+.|..||+.|++++ .++||++||+..++||||+||++||||+||++||+++.|.++++|.+||+|||.
T Consensus 10 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 10 NPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCH 89 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999986 489999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 188 NSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 188 N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
||++||+++ |.||.+|..|+++|+++++++.
T Consensus 90 Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 90 NAQTFNLEG-SQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHSCTT-SHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHCCCC-CHHHHHHHHHHHHHHHHHHHcC
Confidence 999999977 9999999999999999998764
No 151
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.90 E-value=3.7e-24 Score=220.34 Aligned_cols=105 Identities=32% Similarity=0.573 Sum_probs=99.0
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCCCCCCC--CCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q psy9598 113 KRPFNWKNECREVLETLWVCPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 190 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~--~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~ 190 (1915)
+....++..|..||+.|++++.++||.+|||. .++||||+||++||||+||++||++|.|.++++|.+||+|||.||+
T Consensus 17 r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 96 (127)
T 2oss_A 17 RQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCY 96 (127)
T ss_dssp CCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999994 5899999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 191 NYNQNKRSKIYIMTTRLSEFAEEHLRRL 218 (1915)
Q Consensus 191 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~ 218 (1915)
+||+++ |.||.+|..|+++|+++|+++
T Consensus 97 ~yN~~~-s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 97 IYNKPG-DDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp HHSCTT-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHC
Confidence 999977 999999999999999999876
No 152
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.90 E-value=5.9e-24 Score=217.31 Aligned_cols=109 Identities=35% Similarity=0.610 Sum_probs=102.1
Q ss_pred cCCchhHHHHHHHHHHHHhc-CCCCCCCCCCCCCC--CCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 112 LKRPFNWKNECREVLETLWV-CPDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 112 ~~~~~~~~~~~~~il~~l~~-~~~~~~F~~pvd~~--~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N 188 (1915)
...+.++++.|..+|..|++ ++.++||.+|||.. ++||||+||++||||+||++||+++.|.++++|..||+|||.|
T Consensus 6 ~~~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (119)
T 3p1f_A 6 IFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNN 85 (119)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999988 78999999999965 8999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 189 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 221 (1915)
Q Consensus 189 ~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 221 (1915)
|++||+++ |.||.+|..|+++|++.++.+...
T Consensus 86 a~~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 86 AWLYNRKT-SRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999976 999999999999999999998765
No 153
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.90 E-value=5.3e-24 Score=222.59 Aligned_cols=116 Identities=46% Similarity=0.838 Sum_probs=108.6
Q ss_pred cCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhh
Q psy9598 1527 LKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606 (1915)
Q Consensus 1527 ~~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~ 1606 (1915)
......|++.|..||+.|+.++.++||+.||+..++||||++|++||||+||++||.+|.|.++++|..||+|||.||+.
T Consensus 16 ~~~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (135)
T 3mb3_A 16 SYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKA 95 (135)
T ss_dssp -CCSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy9598 1607 YNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWNSHKN 1642 (1915)
Q Consensus 1607 yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~~~ 1642 (1915)
||++++|.||.+|..|+++|+++|..+...++...+
T Consensus 96 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~~r 131 (135)
T 3mb3_A 96 YTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALR 131 (135)
T ss_dssp HSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999733999999999999999999999998875544
No 154
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.90 E-value=3.6e-24 Score=220.21 Aligned_cols=108 Identities=27% Similarity=0.322 Sum_probs=100.4
Q ss_pred ccCCchhHHHHHHHHHHHHhc------CCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHH
Q psy9598 111 KLKRPFNWKNECREVLETLWV------CPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 184 (1915)
Q Consensus 111 ~~~~~~~~~~~~~~il~~l~~------~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~L 184 (1915)
+.+...+|++.|..||+.|++ ++.++||.+||+..++||||+||++||||+||++||+++.|.++++|..||+|
T Consensus 9 ~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~l 88 (124)
T 3mb4_A 9 KSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVM 88 (124)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344567899999999999998 44579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 185 VFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 185 if~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
||.||++||+++ |.||.+|..|+++|++.|+++.
T Consensus 89 i~~Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 89 MFNNACTYNEPE-SLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999977 9999999999999999999874
No 155
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.90 E-value=6.1e-24 Score=219.61 Aligned_cols=110 Identities=22% Similarity=0.350 Sum_probs=103.1
Q ss_pred CCchhHHHHHHHHHHHHhcCC-------CCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHH
Q psy9598 113 KRPFNWKNECREVLETLWVCP-------DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRV 185 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~-------~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Li 185 (1915)
..+..|.+.|..||+.|++++ .++||++||+...+||||+||++||||+||++||.++.|.++++|.+||+||
T Consensus 7 ~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 7 PNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 456789999999999999876 4799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 186 FHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 186 f~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
|.||++||+++ |.||.+|..|+++|+++|+++...-.
T Consensus 87 ~~Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~l~~~~~ 123 (129)
T 2grc_A 87 CQNAQTFNLEG-SLIYEDSIVLQSVFTSVRQKIEKEDD 123 (129)
T ss_dssp HHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 99999999977 99999999999999999999876543
No 156
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.90 E-value=4.6e-24 Score=220.61 Aligned_cols=107 Identities=27% Similarity=0.492 Sum_probs=97.6
Q ss_pred cCCchhHHHHHHHHHHHHhcCCC---CCCCCCCCCC--CCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q psy9598 112 LKRPFNWKNECREVLETLWVCPD---SEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVF 186 (1915)
Q Consensus 112 ~~~~~~~~~~~~~il~~l~~~~~---~~~F~~pvd~--~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif 186 (1915)
.++..+..+.|..||+.|+++++ +|||++|||. .++||||+||++||||+||++||+++.|.++++|.+||+|||
T Consensus 17 ~~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 96 (130)
T 2ouo_A 17 SSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMF 96 (130)
T ss_dssp --CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34455677899999999999875 8999999995 469999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 187 HNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 187 ~N~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
.||++||+++ |.||.+|..|+++|+++|+.+.
T Consensus 97 ~Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 97 SNCYKYNPPD-HEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp HHHHHHSCTT-SHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999977 9999999999999999998764
No 157
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.89 E-value=9e-24 Score=219.90 Aligned_cols=108 Identities=32% Similarity=0.496 Sum_probs=101.2
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHhh
Q psy9598 114 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG--DNYESPIDFVKDVKRVFHNSRN 191 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~--~~Y~~~~~f~~D~~Lif~N~~~ 191 (1915)
..+..++.|..||..|++|+.++||++||+. .+||||+||++||||+||++||++ +.|.++++|.+||+|||.||++
T Consensus 17 m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~ 95 (135)
T 2yyn_A 17 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAE 95 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHH
Confidence 4456778999999999999999999999998 799999999999999999999998 5899999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 192 YNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 192 yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
||+++ |.||.+|..|+++|+++|+++...+.
T Consensus 96 yN~~~-s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 96 FNEPD-SEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp HSCTT-SHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HCCCC-CHHHHHHHHHHHHHHHHHHHhccccC
Confidence 99977 99999999999999999999977654
No 158
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=1.1e-21 Score=277.11 Aligned_cols=369 Identities=11% Similarity=-0.024 Sum_probs=275.7
Q ss_pred eEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC-CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 469 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD-GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 469 ~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t-g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
...+.+|...|.+++|+++ .++++++.||.+.||.+.. +.....+.+|. .+.+++|+|+|++|++++ ++.|.+|++
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~ 272 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNP 272 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECT
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecC
Confidence 3456899999999999988 6777888899999998653 44455666665 467789999999998885 899999999
Q ss_pred CCCceEEEeec-----------CCCCeEEEEec-cCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccC
Q psy9598 548 QTLAPISVLVG-----------HQGIITGVNFC-PLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615 (1915)
Q Consensus 548 ~tg~~~~~l~~-----------h~~~V~sl~fs-p~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~ 615 (1915)
... .+..+.+ |...|.+++|+ |+ +.+|++++ ++.|.+|++.++.... +.
T Consensus 273 ~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd----G~~la~~~-~~~i~~~~~~~~~~~~-------------~~ 333 (1045)
T 1k32_A 273 DTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLD----GDLIAFVS-RGQAFIQDVSGTYVLK-------------VP 333 (1045)
T ss_dssp TTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECG----GGCEEEEE-TTEEEEECTTSSBEEE-------------CS
T ss_pred Cce-EeeeeccCcccccccccccccccceeeecCCC----CCEEEEEE-cCEEEEEcCCCCceEE-------------cc
Confidence 544 4445554 34579999999 95 47888887 8899999987664211 12
Q ss_pred CCCC-ceEEEEECCCCcEEEEEeCCCeEE-EEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 616 PGNA-HILCSSFSPGGLFLATGSGDHHVR-VYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 616 ~~~~-~V~~l~fspdg~~Lasgs~Dg~I~-IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
.+.. .+.+++|+ +|..|++++.++.|. +|++.+. ....+.+|...+.+++|+|+|.+|++++.++.|++||+.
T Consensus 334 ~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~----~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~ 408 (1045)
T 1k32_A 334 EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG----KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 408 (1045)
T ss_dssp CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC----CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC----CceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence 3344 78999999 999999999888888 8888432 123344788899999999999999999999999999999
Q ss_pred CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC---------CeEEEEECCCCceEEEeeCCC
Q psy9598 694 CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN---------FQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D---------g~I~vwD~~tg~~i~~l~gH~ 764 (1915)
+++..... ..+...+.+++|+|||++|++++..+ +.|++||+.+++ +..+..|.
T Consensus 409 tg~~~~~~----------------~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 409 TGKPTVIE----------------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp TCCEEEEE----------------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred CCceEEec----------------cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 88754422 12455678899999999998887622 489999999887 77788898
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc---cee----------------------------ee----ee-
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG---YKW----------------------------FH----NI- 808 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~---~~~----------------------------~~----~~- 808 (1915)
..+.+++|+| ++.+|++++.++...+|+........ ... +. ..
T Consensus 472 ~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 550 (1045)
T 1k32_A 472 SHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 550 (1045)
T ss_dssp SBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCE
T ss_pred cccCCceEcC-CCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceE
Confidence 8999999999 99999999998888888764322100 000 00 00
Q ss_pred ecCCCCcceEEEEEcCCCCEEEE-------------EeCCCeEEEEeCCCCccccc--CCCceeecCCCCeeeecCCCcc
Q psy9598 809 VEGQGEGALFDGKWSPDGTTCAL-------------TDSYGHLLVYGLGGFKRPQN--IPRELFFHTDYRTLNRPNGLFE 873 (1915)
Q Consensus 809 ~~~~~~~~V~~vafSpdg~~Las-------------g~~dG~I~Iwdl~s~~~~~~--l~~~~~F~~d~~~Lv~~~~~~~ 873 (1915)
....+.+.+.+++|+|||.++++ .+..+.|++||+.+++.... -...+.|++|++.|+......+
T Consensus 551 ~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v~~~~~S~DG~~l~~~~~~~i 630 (1045)
T 1k32_A 551 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGK 630 (1045)
T ss_dssp ECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSC
T ss_pred EcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecCcceEEECCCCCEEEEEcCCcE
Confidence 00113367889999999987875 12345789999988764321 1336789999999886655567
Q ss_pred ceeecccCC
Q psy9598 874 PTYDEVTNL 882 (1915)
Q Consensus 874 ~v~D~~t~~ 882 (1915)
.+||+.+..
T Consensus 631 ~~~d~~~~~ 639 (1045)
T 1k32_A 631 IYTFPLEKP 639 (1045)
T ss_dssp EEEEESSCT
T ss_pred EEEeCccCc
Confidence 799986653
No 159
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=214.58 Aligned_cols=104 Identities=21% Similarity=0.342 Sum_probs=99.3
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
..++++.|..||+.|++++.++||..|||...+||||+||++||||+||++||++|.|.++++|..||+|||.||++||+
T Consensus 11 ~~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (123)
T 3hme_A 11 STPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNR 90 (123)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
++ |.+|.+|..|++.|++.|.+..
T Consensus 91 ~~-s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 91 PD-TVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp TT-SHHHHHHHHHHHHHHHHTCHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 77 9999999999999999987653
No 160
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=217.12 Aligned_cols=108 Identities=25% Similarity=0.363 Sum_probs=103.0
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 194 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~ 194 (1915)
..++...|..||+.|++++.++||.+|||...+||||+||++||||+||++||++|.|.++++|..||+|||.||++||+
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNA 90 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 195 NKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 195 ~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
++ |.+|.+|..|++.|++.|+.+.....
T Consensus 91 ~~-s~~~~~A~~L~~~~~~~~~~~~~~~~ 118 (135)
T 3rcw_A 91 RD-TVFYRAAVRLRDQGGVVLRQARREVD 118 (135)
T ss_dssp TT-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 99999999999999999999876654
No 161
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.89 E-value=1.2e-23 Score=214.86 Aligned_cols=106 Identities=25% Similarity=0.417 Sum_probs=101.3
Q ss_pred chhHHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 115 PFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N 188 (1915)
+..|+..|..||+.|+++.+ +++|.+||+...+||||+||++||||+||++||.++.|.++++|..||+|||.|
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 85 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKN 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999877 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 189 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 221 (1915)
Q Consensus 189 ~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 221 (1915)
|++||+++ |.||.+|..|+++|+++|+++...
T Consensus 86 a~~yN~~~-s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 86 AKTYNEPG-SQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999977 999999999999999999998654
No 162
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.89 E-value=1.5e-23 Score=211.77 Aligned_cols=105 Identities=30% Similarity=0.467 Sum_probs=100.8
Q ss_pred CchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhc
Q psy9598 1529 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 1608 (1915)
Q Consensus 1529 ~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN 1608 (1915)
.+..|...|..||+.|++++.++||+.||++.++||||++|++||||+||++||++|.|.++++|..||+|||.||++||
T Consensus 4 ~~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 83 (112)
T 3d7c_A 4 DPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1609 QNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1609 ~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+++ |.+|.+|..|+++|+++++++.
T Consensus 84 ~~~-s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 84 PPD-SEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp CTT-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHCC
Confidence 988 9999999999999999998753
No 163
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=216.32 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q psy9598 116 FNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 189 (1915)
Q Consensus 116 ~~~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~ 189 (1915)
..+++.|..|++.|+++.+ ++||.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 87 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNA 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4688899999999998765 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 190 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 190 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
++||+++ |.+|.+|..|+++|++.++++...+.
T Consensus 88 ~~yN~~~-s~~~~~A~~L~~~f~~~~~~~~~~l~ 120 (126)
T 3mqm_A 88 EKYYGRK-SPVGRDVCRLRKAYYNARHEASAQID 120 (126)
T ss_dssp HHHHCTT-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999977 99999999999999999999988764
No 164
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.89 E-value=3.2e-23 Score=211.26 Aligned_cols=105 Identities=28% Similarity=0.405 Sum_probs=100.3
Q ss_pred chhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcC
Q psy9598 1530 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~ 1609 (1915)
.....+.|..||..|++++.++||+.||+...+||||++|++||||+||++||++|.|.++++|..||+|||.||+.||+
T Consensus 11 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (117)
T 3g0l_A 11 DSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNE 90 (117)
T ss_dssp CTTHHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1610 NKRSKIYIMTTRLSEFAEEHLRRLTV 1635 (1915)
Q Consensus 1610 ~~~s~i~~~a~~l~~~f~~~~~~~~~ 1635 (1915)
++ |.+|.+|..|+++|+++|+++..
T Consensus 91 ~~-s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 91 DD-SDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SS-SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 88 99999999999999999999863
No 165
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=1.2e-21 Score=247.51 Aligned_cols=279 Identities=11% Similarity=-0.010 Sum_probs=218.0
Q ss_pred CeEEEecc--cCCceeeeEEecCCCCcEEEEEEcC--------------CCCEEEEEECC------CcEEEEECCCCcEE
Q psy9598 454 RSLMISSH--KYSNLRQHYVNLGHLSAVFCVLFDK--------------LGEVIVTGADD------LLIKLWRARDGKLL 511 (1915)
Q Consensus 454 ~~~~i~~~--~~~~~~~~~~l~gH~~~V~~vafsp--------------dg~~LaTGs~D------g~I~IWd~~tg~~~ 511 (1915)
..+.+|+. ..........+.+|...|.++++++ .+..|+.++.+ +.|++||+.. ...
T Consensus 93 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~ 171 (415)
T 2hqs_A 93 VAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQ 171 (415)
T ss_dssp EEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSC
T ss_pred EEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCC
Confidence 38899987 5555444467899999999888875 25666666654 7999999974 456
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEE-EEeCCCe
Q psy9598 512 ATLRGCSGEISDIAIDNRNILLAAGTVDK---TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA-STSTDGC 587 (1915)
Q Consensus 512 ~~l~gH~~~I~~Lafspdg~~LaSgs~Dg---tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~-sgs~Dgt 587 (1915)
..+.+|...|.+++|+|+|++|++++.++ .|++||+.++++. .+..|.+.+.+++|+|+ +..|+ +++.+|.
T Consensus 172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spd----g~~la~~~~~~g~ 246 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPD----GSKLAFALSKTGS 246 (415)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTT----SSEEEEEECTTSS
T ss_pred EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCC----CCEEEEEEecCCC
Confidence 77888999999999999999999999875 9999999998875 56778889999999994 46666 6666654
Q ss_pred --EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-CC--eEEEEEecCCCCCceeEEeccC
Q psy9598 588 --IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DH--HVRVYKMDGVDSPLGILEVEEH 662 (1915)
Q Consensus 588 --I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg--~I~IwDl~~~~~~~~i~~l~~h 662 (1915)
|.+||+.++... .+..+...+.+++|+|+|.+|++++. ++ .|.+||+.+.. ...+..|
T Consensus 247 ~~i~~~d~~~~~~~-------------~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~----~~~l~~~ 309 (415)
T 2hqs_A 247 LNLYVMDLASGQIR-------------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----PQRITWE 309 (415)
T ss_dssp CEEEEEETTTCCEE-------------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----CEECCCS
T ss_pred ceEEEEECCCCCEE-------------eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC----EEEEecC
Confidence 999998876421 12234577999999999999988876 45 56677774322 3345567
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC---CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEE
Q psy9598 663 SDKVDSIQWSHSHLRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITA 739 (1915)
Q Consensus 663 ~~~V~sl~fspdg~~L~sgs~D---G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~ 739 (1915)
...+.+++|+|+|.+|++++.+ +.|.+||+.++....+ ..+ ..+.+++|+|+|++|+++
T Consensus 310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l-----------------~~~-~~~~~~~~spdg~~l~~~ 371 (415)
T 2hqs_A 310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-----------------SST-FLDETPSLAPNGTMVIYS 371 (415)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC-----------------CCS-SSCEEEEECTTSSEEEEE
T ss_pred CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe-----------------cCC-CCcCCeEEcCCCCEEEEE
Confidence 7789999999999999988864 5899999998774321 112 267889999999999998
Q ss_pred EecCC--eEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 740 INFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 740 s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
+..++ .|++||+. +..+..+.+|.+.|.+++|+|
T Consensus 372 s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 372 SSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp EEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECC
T ss_pred EcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccc
Confidence 87333 89999986 667888999999999999999
No 166
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.89 E-value=2.5e-23 Score=214.64 Aligned_cols=106 Identities=26% Similarity=0.447 Sum_probs=100.5
Q ss_pred chhHHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 115 PFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N 188 (1915)
...+..+|..|++.|.++.+ ++||++||+...+||||+||++||||+||++||+++.|.++++|..||+|||.|
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFEN 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 45788999999999998765 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 189 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 221 (1915)
Q Consensus 189 ~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 221 (1915)
|++||+++ |.||.+|..|+++|+++|+++...
T Consensus 95 a~~yN~~~-s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 95 AKRYNVPN-SAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999977 999999999999999999998765
No 167
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.89 E-value=2.8e-23 Score=223.61 Aligned_cols=104 Identities=27% Similarity=0.475 Sum_probs=97.7
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCCCCC--CCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q psy9598 115 PFNWKNECREVLETLWVCPDSEPFRKPVD--KLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 192 (1915)
Q Consensus 115 ~~~~~~~~~~il~~l~~~~~~~~F~~pvd--~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~y 192 (1915)
...|++.|..||..|++++.++||..||| ..++||||+||++||||+||++||.++.|.++++|..||+|||.||++|
T Consensus 19 ~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~y 98 (166)
T 3fkm_X 19 NKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLY 98 (166)
T ss_dssp THHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999 4579999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 193 NQNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 193 N~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
|+++ |.||.+|..|+++|+++|+.+.
T Consensus 99 N~~~-s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 99 NTSN-SVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp SCTT-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHcc
Confidence 9977 9999999999999999998865
No 168
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=212.33 Aligned_cols=104 Identities=22% Similarity=0.390 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q psy9598 116 FNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 189 (1915)
Q Consensus 116 ~~~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~ 189 (1915)
......|..||+.|+++.+ ++||.+||+...+||||+||++||||+||++||+++.|.++++|..||+|||.||
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 83 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNA 83 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3567889999999998854 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 190 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 190 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
++||+++ |.+|.+|..|+++|++.++++..
T Consensus 84 ~~yN~~~-s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 84 KSYYKPD-SPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHSCTT-SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999977 99999999999999999998864
No 169
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.88 E-value=1.1e-23 Score=215.76 Aligned_cols=106 Identities=26% Similarity=0.468 Sum_probs=98.8
Q ss_pred CchhHHHHHHHHHHHHhcCCC---CCCCCCCCCCCC--CCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 114 RPFNWKNECREVLETLWVCPD---SEPFRKPVDKLD--HPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~---~~~F~~pvd~~~--~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N 188 (1915)
...+..+.|..||..|++++. +|||.+|||... +||||+||++||||+||++||+++.|.++++|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 345678999999999999888 899999999655 999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 189 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTV 220 (1915)
Q Consensus 189 ~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~ 220 (1915)
|++||+++ |.||.+|..|+++|+++|+++..
T Consensus 86 a~~yN~~~-s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 86 CYKYNPPD-HEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999977 99999999999999999987743
No 170
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=5.2e-23 Score=209.93 Aligned_cols=107 Identities=26% Similarity=0.330 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..|...|..||+.|++++.++||+.||+..++||||++|++||||+||++||++|.|.++++|..||+|||.||+.||++
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAK 85 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1611 KRSKIYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1611 ~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
+ |.+|.+|..|++.|+.+++++....+
T Consensus 86 ~-s~~~~~A~~L~~~~~~~l~~~~~~~~ 112 (121)
T 2d9e_A 86 D-TIFYRAAVRLREQGGAVLRQARRQAE 112 (121)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 99999999999999999999876544
No 171
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.88 E-value=3.5e-23 Score=213.97 Aligned_cols=109 Identities=22% Similarity=0.356 Sum_probs=103.0
Q ss_pred cCCchhhHHHHHHHHHHHHcCC-------CCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHH
Q psy9598 1527 LKRPFNWKNECREVLETLWVCP-------DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKR 1599 (1915)
Q Consensus 1527 ~~~~~~~~~~~~~ll~~l~~~~-------~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~l 1599 (1915)
...++.|.+.|..||+.|++++ .++||+.||+...+||||+||++||||+||++||.+|.|.++.+|..||+|
T Consensus 6 ~~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 85 (129)
T 2grc_A 6 SPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVML 85 (129)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4567889999999999999876 379999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1600 VFHNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1600 if~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
||+||++||+++ |.+|.+|..|+++|+++++++...
T Consensus 86 i~~Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 86 LCQNAQTFNLEG-SLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999988 999999999999999999998853
No 172
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.5e-23 Score=213.35 Aligned_cols=106 Identities=24% Similarity=0.363 Sum_probs=100.5
Q ss_pred CCchhhHHHHHHHHHHHHcCC------CCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHH
Q psy9598 1528 KRPFNWKNECREVLETLWVCP------DSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVF 1601 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~------~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif 1601 (1915)
..+..+.+.|..||+.|++++ .++||+.||+..++||||++|++||||+||++||+++.|.++++|..||+|||
T Consensus 9 ~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 9 PNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999986 48999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1602 HNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1602 ~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
.||++||+++ |.||.+|..|+++|++++++++
T Consensus 89 ~Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 89 HNAQTFNLEG-SQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHHSCTT-SHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999988 9999999999999999998765
No 173
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.88 E-value=6.5e-23 Score=207.46 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..+...|..||+.|++++.++||..||++.++||||+||++||||+||++||++|.|.++++|..||+|||.||++||++
T Consensus 7 ~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~ 86 (117)
T 2i7k_A 7 TPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKP 86 (117)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1611 KRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1611 ~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+ |.+|.+|..|++.|++++....
T Consensus 87 ~-s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 87 E-TIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp S-SSHHHHHHHHHHHHHHHHHHHT
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999998765
No 174
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.88 E-value=5.6e-23 Score=209.11 Aligned_cols=102 Identities=30% Similarity=0.474 Sum_probs=97.4
Q ss_pred chhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcC
Q psy9598 1530 PFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQ 1609 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~ 1609 (1915)
...+.+.|..||..|++++.++||..||+...+||||++|++||||+||++||++|.|.++++|..||+|||.||+.||+
T Consensus 14 ~~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 93 (116)
T 3nxb_A 14 LDDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93 (116)
T ss_dssp -CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy9598 1610 NKRSKIYIMTTRLSEFAEEHLRR 1632 (1915)
Q Consensus 1610 ~~~s~i~~~a~~l~~~f~~~~~~ 1632 (1915)
++ |.+|.+|..|+++|+++|.+
T Consensus 94 ~~-s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 94 ES-SEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHHHHHhh
Confidence 88 99999999999999998863
No 175
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.88 E-value=5.8e-23 Score=209.83 Aligned_cols=102 Identities=29% Similarity=0.547 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCC
Q psy9598 1532 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 1611 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~ 1611 (1915)
.+...|..||+.|++++.++||+.||+..++||||++|++||||+||++||++|.|.++++|..||+|||+||++||+++
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1612 RSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1612 ~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
|.+|.+|..|+++|+++++.++
T Consensus 93 -s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 93 -TSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp -SHHHHHHHHHHHHHHHHHHTSG
T ss_pred -CHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999874
No 176
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.87 E-value=4.5e-23 Score=219.20 Aligned_cols=108 Identities=28% Similarity=0.517 Sum_probs=101.2
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCC--CCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 1605 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~ 1605 (1915)
.....++..|..||+.|++++.++||+.||+.. ++||||+||++||||+||++||+++.|.++++|..||+|||.||+
T Consensus 28 r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 28 RVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp CCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 345678888999999999999999999999966 799999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1606 NYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1606 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
+||+++ |.||.+|..|+++|+++++++...
T Consensus 108 ~YN~~~-s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 108 IYNKPT-DDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HHSCTT-SHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHCCch
Confidence 999988 999999999999999999987643
No 177
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.87 E-value=8.1e-23 Score=208.84 Aligned_cols=107 Identities=25% Similarity=0.412 Sum_probs=102.2
Q ss_pred CchhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHH
Q psy9598 1529 RPFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFH 1602 (1915)
Q Consensus 1529 ~~~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~ 1602 (1915)
.+..|++.|..||+.|+++++ ++||..||+..++||||++|++||||+||++||.+|.|.++++|..||+|||.
T Consensus 5 ~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 5 SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999877 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1603 NSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1603 Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
||+.||+++ |.+|.+|..|+++|+++++++...
T Consensus 85 Na~~yN~~~-s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 85 NAKTYNEPG-SQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCC-CHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999988 999999999999999999998753
No 178
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.87 E-value=1.5e-22 Score=215.59 Aligned_cols=105 Identities=29% Similarity=0.482 Sum_probs=95.7
Q ss_pred HHHHHHHHHHH-HhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 118 WKNECREVLET-LWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 118 ~~~~~~~il~~-l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
+...+..|+.. |++++.++||..|||...+||||+||++||||+||++||+++.|.++++|..||+|||.||++||+++
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~ 109 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 109 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 44445555543 67789999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 197 RSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
|.||.+|..|+++|++.|+++...+.
T Consensus 110 -s~i~~~A~~L~~~~~~~l~e~~~~l~ 135 (158)
T 3uv4_A 110 -SQYTKTAQEIVNVCYQTLTEYDEHLT 135 (158)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988775
No 179
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=1.2e-21 Score=265.58 Aligned_cols=328 Identities=11% Similarity=-0.006 Sum_probs=226.3
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC---CEEEEEEeCCCCEEEEEeCC---------CcEEEE
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSG---EISDIAIDNRNILLAAGTVD---------KTIRIW 545 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~---~I~~Lafspdg~~LaSgs~D---------gtIrVW 545 (1915)
.+.+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|||||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3668899999998877 7899999999999998888887775 49999999999999999874 788899
Q ss_pred ECCCCceEEEee---cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccc-ccccc-----CC
Q psy9598 546 NLQTLAPISVLV---GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM-FNERI-----RP 616 (1915)
Q Consensus 546 Dl~tg~~~~~l~---~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~-~~~~~-----~~ 616 (1915)
|+.++.. ..+. +|...+.+++|+|+ ++.|++++. +.|.+||+.++............. +.... ..
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPd----G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPK----GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSS----TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred ECCCCce-EeccCCccccccccccEECCC----CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 9999876 3333 34556899999994 488888886 799999998875432221110000 00000 00
Q ss_pred CCCceEEEEECCCCcEEEEEeCCC----------------------------------eEEEEEecCCCCCceeEEecc-
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDH----------------------------------HVRVYKMDGVDSPLGILEVEE- 661 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg----------------------------------~I~IwDl~~~~~~~~i~~l~~- 661 (1915)
-...+.+++|||||+.|++++.++ .|++||+.+.. ....+..
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~---~~~~l~~~ 247 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT---HDLEMMPP 247 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC---CCEECCCC
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc---eeEEeeCC
Confidence 012347899999999999887553 78999985432 2233333
Q ss_pred -----CCCCeeEEEEcCCCCEEEEEeC----CCcEEEEEccCCceEEeeecccccCCCCccccccccccccE----EEEE
Q psy9598 662 -----HSDKVDSIQWSHSHLRFVSGSR----DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKV----TMVA 728 (1915)
Q Consensus 662 -----h~~~V~sl~fspdg~~L~sgs~----DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V----~~va 728 (1915)
|...+.+++|+|+|++|++++. ++.|.+||+.++++....... +...+ ..++
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---------------~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE---------------SEAWLHRQNEEPV 312 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE---------------CSSCCCCCCCCCE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec---------------cCCEEeccCCCce
Confidence 3667999999999998877653 357999999988755432110 01111 3579
Q ss_pred ECCCCCEEEEE-EecCC------eEEEEE-CCCCc--eEEEeeCCCCCeEE-EEEccCCCCEEEEEecC---ceEEEEEC
Q psy9598 729 WDASDRWVITA-INFNF------QIKIWD-AFNGD--LVQVLKGHTNEVFV-LESHPFDSRVLLSAGHD---GLIIIWDI 794 (1915)
Q Consensus 729 ~spdg~~L~t~-s~~Dg------~I~vwD-~~tg~--~i~~l~gH~~~V~s-l~~sp~dg~~LaSgs~D---G~I~IWdl 794 (1915)
|+|+|+.|+.+ +..++ .|++|| ..++. ++..+..+...+.. ++|+| +++.|+..+.+ +.+.||++
T Consensus 313 ~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-KGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp ECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET-TTTEEEEEESSSCTTCCEEEEE
T ss_pred EcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC-CCCEEEEEEcCCCCcceEEEEE
Confidence 99999988765 44466 577788 34444 15555544444554 69999 88888766655 78999998
Q ss_pred CCCccccceeeeeeecCC--CCcceEEEEEcCCCCEEEEEeCC
Q psy9598 795 LSSKQRGYKWFHNIVEGQ--GEGALFDGKWSPDGTTCALTDSY 835 (1915)
Q Consensus 795 ~s~~~~~~~~~~~~~~~~--~~~~V~~vafSpdg~~Lasg~~d 835 (1915)
..........+. .. +.+.+..++|+|||++|++....
T Consensus 392 ~~~~~~~~~~l~----~~~~~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 392 NTVGNFNRQCLS----CDLVENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp CSSTTCCCBCSS----TTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred eCCCCCCcceec----ccccCCCCeEEEEECCCCCEEEEEccC
Confidence 754310011111 11 34568899999999998876543
No 180
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=8.6e-21 Score=256.64 Aligned_cols=333 Identities=13% Similarity=0.073 Sum_probs=227.3
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE-EEEeCCC-----------------CCEEEEEEeCCCCEEEEEeCCC
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL-ATLRGCS-----------------GEISDIAIDNRNILLAAGTVDK 540 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~-~~l~gH~-----------------~~I~~Lafspdg~~LaSgs~Dg 540 (1915)
+..+.|+ |..+++++.+| | +||+.+|+.+ ..+..|. ..|.+++|+|| ..|+.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4457777 66778888888 8 9999999874 4444333 56999999999 6665554 59
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc-----CccccceeccCcccccc--c
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-----DIDISKTVFHEPVMFNE--R 613 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~-----~~~~~~~~~~~~~~~~~--~ 613 (1915)
.|++||+.++.... +..+...+.+++|+|+ ++.|+++ .++.|.+|++.+ +................ .
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~Spd----G~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSPV----GDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECTT----SSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCCC----CCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 99999999887654 4456778999999994 4788885 689999999987 54322111110000000 0
Q ss_pred cCCCCCceEEEEECCCCcEEEEEe---------------------------------CCCeEEEEEecCCCCCceeEEec
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGS---------------------------------GDHHVRVYKMDGVDSPLGILEVE 660 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs---------------------------------~Dg~I~IwDl~~~~~~~~i~~l~ 660 (1915)
...+...+.+++|+|||++|++++ .++.|++||+.+.. ...+....
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-~~~~~~~~ 254 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK-TVYLQTGE 254 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE-EEECCCCS
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc-eEeeccCC
Confidence 001112357899999999999987 44689999984322 11111122
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEEccCC-ceEEeeecccccCCCCccccccccccccEEEEEECC--C
Q psy9598 661 EHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYKCS-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA--S 732 (1915)
Q Consensus 661 ~h~~~V~sl~fspdg~~L~sgs~DG-----~I~IWDl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp--d 732 (1915)
.|...+.+++|+|+|++|++++.++ .|.+||+.++ ....+..... ......+.+++|+| +
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~------------~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD------------KHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC------------SSCCCCCSCCEECTTCS
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC------------CCeECccCCceeecCCC
Confidence 5677899999999999999988776 8999999988 4322211000 00111235689999 9
Q ss_pred CCEEEEEEecCCeEEEEECC-CCceEEEeeCCCCCeEE-EEEccCCCCEEEEEe-cCc----eEEEEECCCCccccceee
Q psy9598 733 DRWVITAINFNFQIKIWDAF-NGDLVQVLKGHTNEVFV-LESHPFDSRVLLSAG-HDG----LIIIWDILSSKQRGYKWF 805 (1915)
Q Consensus 733 g~~L~t~s~~Dg~I~vwD~~-tg~~i~~l~gH~~~V~s-l~~sp~dg~~LaSgs-~DG----~I~IWdl~s~~~~~~~~~ 805 (1915)
|.+|+++.. ++.++||.+. ++..+..+..|...|.. ++|+| ++..|+.++ .++ .|.+||+.++.. ..+
T Consensus 323 g~~l~~~~~-~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~l 397 (706)
T 2z3z_A 323 NQFIWQSRR-DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKT---KDL 397 (706)
T ss_dssp SEEEEEECT-TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCC---EES
T ss_pred CEEEEEEcc-CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCc---eec
Confidence 998887766 8888999876 67788888888888877 79999 777665554 444 677777776553 111
Q ss_pred eeeecCCCCcceEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCc
Q psy9598 806 HNIVEGQGEGALFDGKWSPDGTTCALTDSY----GHLLVYGLGGFK 847 (1915)
Q Consensus 806 ~~~~~~~~~~~V~~vafSpdg~~Lasg~~d----G~I~Iwdl~s~~ 847 (1915)
.+...+.+++|||||++|+++..+ +.|++|++.+++
T Consensus 398 ------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 398 ------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ------cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 134568899999999999887554 569999998876
No 181
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.87 E-value=8.5e-23 Score=209.98 Aligned_cols=106 Identities=27% Similarity=0.361 Sum_probs=99.6
Q ss_pred CCchhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHH
Q psy9598 1528 KRPFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVF 1601 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif 1601 (1915)
.....|++.|..||+.|+++.+ ++||..||+..++||||++|++||||+||++||++|.|.++++|..||+|||
T Consensus 11 k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 11 KYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp CCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456789999999999998544 6999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1602 HNSRNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1602 ~Na~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
.||++||+++ |.||.+|..|+++|+++|+++.
T Consensus 91 ~Na~~yN~~~-s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 91 NNACTYNEPE-SLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHSCTT-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988 9999999999999999998864
No 182
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=208.96 Aligned_cols=106 Identities=26% Similarity=0.447 Sum_probs=100.8
Q ss_pred chhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 1530 PFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 1603 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~N 1603 (1915)
...+..+|++|++.|.++.+ ++||+.||+...+||||++|++||||+||++||+++.|.++++|..||+|||.|
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFEN 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 45788999999999998766 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1604 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1604 a~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
|++||+++ |.||.+|..|+++|+++|+++...
T Consensus 95 a~~yN~~~-s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 95 AKRYNVPN-SAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988 999999999999999999998753
No 183
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.87 E-value=1.8e-22 Score=206.37 Aligned_cols=108 Identities=35% Similarity=0.607 Sum_probs=101.7
Q ss_pred CCchhhHHHHHHHHHHHHc-CCCCCCCCCCCCCC--CCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHh
Q psy9598 1528 KRPFNWKNECREVLETLWV-CPDSEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 1604 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~-~~~s~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na 1604 (1915)
..+.++.+.|..+|..|++ ++.++||+.||+.. ++||||++|++||||+||++||++|.|.++++|..||+|||.||
T Consensus 7 ~~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (119)
T 3p1f_A 7 FKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNA 86 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4567889999999999988 67999999999966 89999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1605 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1605 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
+.||+++ |.+|.+|..|+++|++.++++...
T Consensus 87 ~~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 87 WLYNRKT-SRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987 999999999999999999998753
No 184
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.87 E-value=1.4e-22 Score=208.60 Aligned_cols=106 Identities=32% Similarity=0.568 Sum_probs=99.2
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCC--CCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSR 1605 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~--~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~ 1605 (1915)
.....++..|..||+.|++++.++||+.|||. .++||||+||++||||+||++||++|.|.++++|..||+|||+||+
T Consensus 17 r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 96 (127)
T 2oss_A 17 RQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCY 96 (127)
T ss_dssp CCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 34566788899999999999999999999995 5899999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1606 NYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1606 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+||+++ |.||.+|..|+++|+++++++.
T Consensus 97 ~yN~~~-s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 97 IYNKPG-DDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHSCTT-CHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHCC
Confidence 999988 9999999999999999998764
No 185
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=209.25 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=101.6
Q ss_pred hhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHh
Q psy9598 1531 FNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 1604 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na 1604 (1915)
..+++.|..|++.|+++.+ ++||+.||++..+||||++|++||||+||++||.+|.|.++++|..||+|||.||
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 87 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNA 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4677899999999998765 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1605 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1605 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
++||+++ |.+|.+|..|+++|+++++++...+.
T Consensus 88 ~~yN~~~-s~~~~~A~~L~~~f~~~~~~~~~~l~ 120 (126)
T 3mqm_A 88 EKYYGRK-SPVGRDVCRLRKAYYNARHEASAQID 120 (126)
T ss_dssp HHHHCTT-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 99999999999999999999987654
No 186
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=4.9e-20 Score=224.20 Aligned_cols=281 Identities=12% Similarity=0.060 Sum_probs=203.7
Q ss_pred EEEcCCCCE-EEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCce-EEEeec
Q psy9598 482 VLFDKLGEV-IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV-DKTIRIWNLQTLAP-ISVLVG 558 (1915)
Q Consensus 482 vafspdg~~-LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~-DgtIrVWDl~tg~~-~~~l~~ 558 (1915)
..|++++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.++.. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 346665555 6777889999999999999999888777777 9999999997766665 88999999999988 777777
Q ss_pred CCCCeEEEEeccCccCCCcEEEEEeCCC---eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE
Q psy9598 559 HQGIITGVNFCPLEVNGFNYLASTSTDG---CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 635 (1915)
Q Consensus 559 h~~~V~sl~fsp~~~~d~~~L~sgs~Dg---tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 635 (1915)
+...+.+++|+|+ +.+|+++..++ .|.+||+.++..+..+.. ...+.+++|+|+|++|++
T Consensus 82 ~~~~~~~~~~s~d----g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 82 GQSSMADVDITPD----DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-------------PYDAVGIAISPNGNGLIL 144 (331)
T ss_dssp CSSCCCCEEECTT----SSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-------------CTTEEEEEECTTSSCEEE
T ss_pred CCCCccceEECCC----CCEEEEecCCCCcccEEEEECCCCCeEEEEEC-------------CCCccceEECCCCCEEEE
Confidence 7777666999994 47888555553 999999988764333221 244689999999986555
Q ss_pred E-eCCCe-EEEEEecCCCCCcee-EEeccCCCCeeEEEEcCCCCEEEE-EeCCCcEEEEEccCCce---EEeeecccccC
Q psy9598 636 G-SGDHH-VRVYKMDGVDSPLGI-LEVEEHSDKVDSIQWSHSHLRFVS-GSRDGTALIWYYKCSQW---RFIRLDMNTCL 708 (1915)
Q Consensus 636 g-s~Dg~-I~IwDl~~~~~~~~i-~~l~~h~~~V~sl~fspdg~~L~s-gs~DG~I~IWDl~~~~~---~~~~~~~~~~~ 708 (1915)
+ ..++. |.+|++......... .....+...+.+++|+|+|++|++ +..++.|.+||+.+++. ....
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~------- 217 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV------- 217 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE-------
T ss_pred EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec-------
Confidence 4 55588 999999643221111 112234556899999999996554 55789999999988774 2211
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce--EEEeeCC----CC---CeEEEEEccCCCCE
Q psy9598 709 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL--VQVLKGH----TN---EVFVLESHPFDSRV 779 (1915)
Q Consensus 709 ~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~--i~~l~gH----~~---~V~sl~~sp~dg~~ 779 (1915)
.....+..++|+|+|++|+++...++.|.+||+.+++. +..+..+ .. .+..++|+| ++.+
T Consensus 218 ----------~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~ 286 (331)
T 3u4y_A 218 ----------GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETK 286 (331)
T ss_dssp ----------ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSE
T ss_pred ----------cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCE
Confidence 01244567999999998888765578899999999887 4444433 22 235589999 8887
Q ss_pred EEEE-ecCceEEEEECCCCc
Q psy9598 780 LLSA-GHDGLIIIWDILSSK 798 (1915)
Q Consensus 780 LaSg-s~DG~I~IWdl~s~~ 798 (1915)
|+++ ..++.|.|||+....
T Consensus 287 l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 287 LFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEETTTTEEEEEETTSCE
T ss_pred EEEecCCCCcEEEEEecCCc
Confidence 7555 456799999997654
No 187
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=5.1e-20 Score=224.30 Aligned_cols=305 Identities=10% Similarity=0.094 Sum_probs=204.5
Q ss_pred EEEEEECCCcEEEEECC-CCc--EEEEEeCCCCCEEEEEEeCCCCEEEEEeCC-CcEEEEECC--CCce--EEEeecCCC
Q psy9598 490 VIVTGADDLLIKLWRAR-DGK--LLATLRGCSGEISDIAIDNRNILLAAGTVD-KTIRIWNLQ--TLAP--ISVLVGHQG 561 (1915)
Q Consensus 490 ~LaTGs~Dg~I~IWd~~-tg~--~~~~l~gH~~~I~~Lafspdg~~LaSgs~D-gtIrVWDl~--tg~~--~~~l~~h~~ 561 (1915)
++++++.|+.|.+|++. ++. .+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++. ++.. +..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444779999999995 443 33333 477889999999999999988876 999999997 5553 34454444
Q ss_pred CeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CC
Q psy9598 562 IITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GD 639 (1915)
Q Consensus 562 ~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~D 639 (1915)
.+.+++|+|+ +.+|++++ .++.|.+||+..+....... .+ .....+.+++|+|+|.+|++++ .+
T Consensus 85 ~~~~~~~s~d----g~~l~~~~~~~~~i~~~d~~~~~~~~~~~---------~~-~~~~~~~~~~~s~dg~~l~~~~~~~ 150 (343)
T 1ri6_A 85 SLTHISTDHQ----GQFVFVGSYNAGNVSVTRLEDGLPVGVVD---------VV-EGLDGCHSANISPDNRTLWVPALKQ 150 (343)
T ss_dssp CCSEEEECTT----SSEEEEEETTTTEEEEEEEETTEEEEEEE---------EE-CCCTTBCCCEECTTSSEEEEEEGGG
T ss_pred CCcEEEEcCC----CCEEEEEecCCCeEEEEECCCCccccccc---------cc-cCCCCceEEEECCCCCEEEEecCCC
Confidence 7899999994 46665555 58999999995221100100 01 1224578899999999888877 89
Q ss_pred CeEEEEEecCCCCCceeE--Eecc-CCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccC--CceEEeeecccccCCCCcc
Q psy9598 640 HHVRVYKMDGVDSPLGIL--EVEE-HSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKC--SQWRFIRLDMNTCLPHTKE 713 (1915)
Q Consensus 640 g~I~IwDl~~~~~~~~i~--~l~~-h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~--~~~~~~~~~~~~~~~~~~~ 713 (1915)
+.|.+||+........+. .+.. ....+.+++|+|+|.+|++++ .++.|.+|++.. +........ ...+
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~--~~~~---- 224 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL--DMMP---- 224 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE--ECSC----
T ss_pred CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec--cccC----
Confidence 999999995422222222 2222 345788999999999776554 889999999953 432211100 0000
Q ss_pred ccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC--C--CceEEEeeCCCCCeEEEEEccCCCCEEEEEe-cCce
Q psy9598 714 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF--N--GDLVQVLKGHTNEVFVLESHPFDSRVLLSAG-HDGL 788 (1915)
Q Consensus 714 ~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~--t--g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs-~DG~ 788 (1915)
........+..++|+|+|.+|+++...++.|.+|++. + ...+..+..+.. +.+++|+| ++++|++++ .++.
T Consensus 225 --~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 225 --ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-SGKYLIAAGQKSHH 300 (343)
T ss_dssp --TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-TSSEEEEECTTTCE
T ss_pred --ccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-CCCEEEEecCCCCe
Confidence 0011234677899999999998777558999999998 3 345556665555 88999999 888888777 6899
Q ss_pred EEEEECC--CCccccceeeeeeecCCCCcceEEEEEcCCC
Q psy9598 789 IIIWDIL--SSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 826 (1915)
Q Consensus 789 I~IWdl~--s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg 826 (1915)
|.||++. ++....+..+. ......+++|.++.
T Consensus 301 v~v~~~d~~~g~~~~~~~~~------~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYA------VGQGPMWVVVNAHE 334 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEE------CSSSCCEEEEEEEC
T ss_pred EEEEEEcCCCceeeEccccc------cCCCCeeEEEEccc
Confidence 9999554 55432122222 11345566776643
No 188
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.87 E-value=2.8e-22 Score=215.78 Aligned_cols=107 Identities=25% Similarity=0.458 Sum_probs=99.4
Q ss_pred cCCchhhHHHHHHHHHHHHcCCCCCCCCCCCCC--CCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHh
Q psy9598 1527 LKRPFNWKNECREVLETLWVCPDSEPFRKPVDK--LDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 1604 (1915)
Q Consensus 1527 ~~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~--~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na 1604 (1915)
......|+..|..||..|++++.++||+.||+. .++||||+||++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 16 ~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (166)
T 3fkm_X 16 FQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNC 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 355678999999999999999999999999994 479999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1605 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1605 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
++||+++ |.||.+|..|+++|+++|.++.
T Consensus 96 ~~yN~~~-s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 96 SLYNTSN-SVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHSSCTT-SHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCC-CHHHHHHHHHHHHHHHHHHHcc
Confidence 9999988 9999999999999999998865
No 189
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=205.92 Aligned_cols=105 Identities=22% Similarity=0.387 Sum_probs=99.1
Q ss_pred chhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 1530 PFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 1603 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~N 1603 (1915)
.....+.|..||+.|+++++ ++||..||+..++||||++|++||||+||++||++|.|.++++|..||+|||.|
T Consensus 3 ~~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 3 TVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp SCCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 34567889999999998855 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1604 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTV 1635 (1915)
Q Consensus 1604 a~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~ 1635 (1915)
|++||+++ |.+|.+|..|+++|+++++++..
T Consensus 83 a~~yN~~~-s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPD-SPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988 99999999999999999999863
No 190
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.86 E-value=3.5e-22 Score=207.95 Aligned_cols=107 Identities=34% Similarity=0.520 Sum_probs=100.6
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcC--CCCCCHHHHHHHHHHHHHHhh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG--DNYESPIDFVKDVKRVFHNSR 1605 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~--~~Y~s~~ef~~Dv~lif~Na~ 1605 (1915)
.+.+...+.|..||..|++++.++||+.||+. ++||||+||++||||+||++||++ +.|.++++|..||+|||.||+
T Consensus 16 ~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~ 94 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 94 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHH
Confidence 45566778999999999999999999999998 799999999999999999999998 589999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1606 NYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1606 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
+||.++ |.||.+|..|+++|+++++++...
T Consensus 95 ~yN~~~-s~i~~~A~~L~~~f~~~~~~~~~~ 124 (135)
T 2yyn_A 95 EFNEPD-SEVANAGIKLENYFEELLKNLYPE 124 (135)
T ss_dssp HHSCTT-SHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHhccc
Confidence 999988 999999999999999999998754
No 191
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.86 E-value=5.9e-22 Score=207.10 Aligned_cols=106 Identities=25% Similarity=0.370 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..+...|..||+.|++++.++||..||+..++||||++|++||||+||++||++|.|.++++|..||+|||.||+.||++
T Consensus 12 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 91 (135)
T 3rcw_A 12 TPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNAR 91 (135)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred hHHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 1611 KRSKIYIMTTRLSEFAEEHLRRLTVRW 1637 (1915)
Q Consensus 1611 ~~s~i~~~a~~l~~~f~~~~~~~~~~~ 1637 (1915)
+ |.+|.+|..|++.|++.++.+....
T Consensus 92 ~-s~~~~~A~~L~~~~~~~~~~~~~~~ 117 (135)
T 3rcw_A 92 D-TVFYRAAVRLRDQGGVVLRQARREV 117 (135)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999887654
No 192
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.86 E-value=2.2e-22 Score=208.03 Aligned_cols=102 Identities=27% Similarity=0.506 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHHcCCC---CCCCCCCCCCC--CCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhh
Q psy9598 1532 NWKNECREVLETLWVCPD---SEPFRKPVDKL--DHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606 (1915)
Q Consensus 1532 ~~~~~~~~ll~~l~~~~~---s~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~ 1606 (1915)
...+.|..||+.|+.+++ ++||+.|||.. ++||||+||++||||+||++||.+|.|.++++|..||+|||.||++
T Consensus 22 ~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~ 101 (130)
T 2ouo_A 22 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYK 101 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 445789999999999875 89999999964 6999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1607 YNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1607 yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
||+++ |.||.+|..|+++|+++|+++.
T Consensus 102 yN~~~-s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 102 YNPPD-HEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp HSCTT-SHHHHHHHHHHHHHHHHHHTSC
T ss_pred HcCCC-CHHHHHHHHHHHHHHHHHHHCC
Confidence 99988 9999999999999999998764
No 193
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.86 E-value=5.4e-22 Score=203.28 Aligned_cols=103 Identities=21% Similarity=0.344 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..+...|..||+.|++++.++||..||+...+||||++|++||||+||++||.+|.|.++++|..||+|||.||+.||++
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 91 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRP 91 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1611 KRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1611 ~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+ |.+|.+|..|++.|++.|.+..
T Consensus 92 ~-s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 92 D-TVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp T-SHHHHHHHHHHHHHHHHTCHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999987654
No 194
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=4.4e-20 Score=251.02 Aligned_cols=306 Identities=11% Similarity=0.089 Sum_probs=224.9
Q ss_pred CCCEEEEEEeCCCCEEEEEeC-CC-----cEEEEECCCCceEEEeecCCCC------------------------eEEEE
Q psy9598 518 SGEISDIAIDNRNILLAAGTV-DK-----TIRIWNLQTLAPISVLVGHQGI------------------------ITGVN 567 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~-Dg-----tIrVWDl~tg~~~~~l~~h~~~------------------------V~sl~ 567 (1915)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 8999999999888777655433 88999
Q ss_pred eccCccCCCcEEEEEeCCCeEEEEecccCc--cccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEE
Q psy9598 568 FCPLEVNGFNYLASTSTDGCIGFWKYKLDI--DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY 645 (1915)
Q Consensus 568 fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~Iw 645 (1915)
|+|+ +++|++++. +.|.+||+.++. ... .+..+...+.+++|||+|++|++++. +.|++|
T Consensus 116 ~SpD----g~~l~~~~~-~~i~~~d~~~~~~~~~~------------~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~ 177 (741)
T 2ecf_A 116 WSPD----AQRLLFPLG-GELYLYDLKQEGKAAVR------------QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVI 177 (741)
T ss_dssp ECTT----SSEEEEEET-TEEEEEESSSCSTTSCC------------BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEE
T ss_pred ECCC----CCEEEEEeC-CcEEEEECCCCCcceEE------------EcccCCcccccccCCCCCCEEEEEeC-CcEEEE
Confidence 9994 588888886 999999998762 111 12234467999999999999998874 699999
Q ss_pred EecCCCCCceeEEeccCCCC----------------eeEEEEcCCCCEEEEEeCCC------------------------
Q psy9598 646 KMDGVDSPLGILEVEEHSDK----------------VDSIQWSHSHLRFVSGSRDG------------------------ 685 (1915)
Q Consensus 646 Dl~~~~~~~~i~~l~~h~~~----------------V~sl~fspdg~~L~sgs~DG------------------------ 685 (1915)
|+.+. ........+... +.+++|+|+|++|++++.|+
T Consensus 178 d~~~g---~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 178 DLASG---RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp ETTTT---EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred ecCCC---CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 98532 222222222222 47899999999999988776
Q ss_pred ---------cEEEEEccC-CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe----cCCeEEEEEC
Q psy9598 686 ---------TALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN----FNFQIKIWDA 751 (1915)
Q Consensus 686 ---------~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~----~Dg~I~vwD~ 751 (1915)
.|.+||+.+ +....+.. ...+...+..++| |||++|++++. .+..|++||+
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~ 319 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQWIDL--------------GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL 319 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCEEECC--------------CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET
T ss_pred CCCCCCCeeEEEEEECCCCCceEEecC--------------CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC
Confidence 788888877 65332110 0135677899999 99999998764 2468999999
Q ss_pred CCCceEEEeeCCCC----CeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEE-EEcCCC
Q psy9598 752 FNGDLVQVLKGHTN----EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDG-KWSPDG 826 (1915)
Q Consensus 752 ~tg~~i~~l~gH~~----~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~v-afSpdg 826 (1915)
.++++...+..|.. .+.+++|+| +++++++++.||.+.||.+..... ...+. .+...|.++ +|+|||
T Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~--~~~l~-----~~~~~v~~~~~~s~dg 391 (741)
T 2ecf_A 320 ASNQQRVLAHETSPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYRIDSKGK--AAALT-----HGNWSVDELLAVDEKA 391 (741)
T ss_dssp TTCCEEEEEEEECSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEEECSSSC--EEESC-----CSSSCEEEEEEEETTT
T ss_pred CCCceEEEEEcCCCCcCCcCCceEECC-CCeEEEEecCCCccEEEEEcCCCC--eeeee-----ecceEEEeEeEEeCCC
Confidence 99998888776653 456889999 888999999999888887753211 22221 234567777 599999
Q ss_pred CEEEEEe-CCC--eEEEEeCCC-CcccccCCC-----ceeecCCCCeeee
Q psy9598 827 TTCALTD-SYG--HLLVYGLGG-FKRPQNIPR-----ELFFHTDYRTLNR 867 (1915)
Q Consensus 827 ~~Lasg~-~dG--~I~Iwdl~s-~~~~~~l~~-----~~~F~~d~~~Lv~ 867 (1915)
+.|++++ .++ .+.||.+.. +.....+.. .+.|++|++.++.
T Consensus 392 ~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~ 441 (741)
T 2ecf_A 392 GLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVD 441 (741)
T ss_dssp TEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEE
T ss_pred CEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEE
Confidence 9876554 444 889998864 443444432 5789999998873
No 195
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.85 E-value=2.3e-22 Score=205.81 Aligned_cols=104 Identities=27% Similarity=0.478 Sum_probs=97.9
Q ss_pred chhhHHHHHHHHHHHHcCCC---CCCCCCCCCCCC--CCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHh
Q psy9598 1530 PFNWKNECREVLETLWVCPD---SEPFRKPVDKLD--HPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 1604 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~---s~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na 1604 (1915)
.....+.|..||..|+.++. ++||+.||+... +||||++|++||||+||++||++|.|.++++|..||+|||.||
T Consensus 7 ~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (120)
T 3jvl_A 7 ISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNC 86 (120)
T ss_dssp SCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 34567889999999999887 899999999776 9999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1605 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1605 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
++||+++ |.+|.+|..|+++|+++++++.
T Consensus 87 ~~yN~~~-s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 87 YKYNPPD-HEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HHHSCTT-SHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHCCCC-CHHHHHHHHHHHHHHHHHHHCc
Confidence 9999988 9999999999999999998875
No 196
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.85 E-value=3.5e-22 Score=219.41 Aligned_cols=105 Identities=31% Similarity=0.500 Sum_probs=99.3
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy9598 114 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYN 193 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN 193 (1915)
.....++.|..||+.|++++.++||++|||...+||||+||++||||+||++||+++.|.++++|.+||+|||.||++||
T Consensus 69 l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 148 (174)
T 2ri7_A 69 LTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYN 148 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 194 QNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 194 ~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
+++ |.||.+|..|+++|+++|+.++
T Consensus 149 ~~~-s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 149 PSD-SPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp CTT-SHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHhcc
Confidence 976 9999999999999999987653
No 197
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.85 E-value=7.3e-22 Score=210.29 Aligned_cols=104 Identities=28% Similarity=0.483 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhcCCC-------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q psy9598 119 KNECREVLETLWVCPD-------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 191 (1915)
Q Consensus 119 ~~~~~~il~~l~~~~~-------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~ 191 (1915)
+++|+.||+.|++... ++||+.||+...+||||+||++||||+||++||+++.|.++++|..||+|||.||++
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5778888888887655 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 192 YNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 192 yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
||+++ |.||.+|..|+++|+++|+++.....
T Consensus 106 yN~~~-s~i~~~A~~L~~~f~~~~~~l~~~pd 136 (150)
T 3tlp_A 106 YNEEG-SQVYNDAHILEKLLKEKRKELGPLPD 136 (150)
T ss_dssp HSCTT-SHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HCCCC-CHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 99976 99999999999999999999876554
No 198
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.85 E-value=1.5e-21 Score=202.18 Aligned_cols=99 Identities=23% Similarity=0.359 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
.++..|..+|..|++++.++||..|||...+||||+||++||||+||++||++|.|.++++|..||+|||.||++||+++
T Consensus 10 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 89 (130)
T 3dai_A 10 ELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDR 89 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCHH----HHHHHHHHHHHHHHHH
Q psy9598 197 RSKI----YIMTTRLSEFAEEHLR 216 (1915)
Q Consensus 197 ~s~i----~~~a~~l~~~f~~~~~ 216 (1915)
|++ +.+|..|+..|...++
T Consensus 90 -s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 90 -DPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ChhHHHHHHHHHHHHHHHHHHHH
Confidence 766 7888999988888886
No 199
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=9.3e-20 Score=216.10 Aligned_cols=257 Identities=14% Similarity=0.085 Sum_probs=195.3
Q ss_pred EEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceEEEeecCC-CCeEEEEecc
Q psy9598 493 TGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-LAPISVLVGHQ-GIITGVNFCP 570 (1915)
Q Consensus 493 TGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t-g~~~~~l~~h~-~~V~sl~fsp 570 (1915)
+++.|+.|++||+.+++... +..|...|.+++|+|+|++|++++ ++.|++||+.+ +.....+.+|. ..|.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 34678999999999888764 556889999999999999999987 78999999999 88877776664 7889999999
Q ss_pred CccCCCcEEEEEe--CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE-EEeCCCeEEEEEe
Q psy9598 571 LEVNGFNYLASTS--TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA-TGSGDHHVRVYKM 647 (1915)
Q Consensus 571 ~~~~d~~~L~sgs--~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La-sgs~Dg~I~IwDl 647 (1915)
+ +.+|++++ .++.+.||.+......... + .+...+.+++|+|+|.+|+ +++.++.+.||++
T Consensus 95 d----g~~l~~~~~~~~~~~~l~~~~~~~~~~~~-----------~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 95 D----GALYAISDKVEFGKSAIYLLPSTGGTPRL-----------M-TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp T----SSEEEEEECTTTSSCEEEEEETTCCCCEE-----------C-CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred C----CCEEEEEEeCCCCcceEEEEECCCCceEE-----------e-ecCCCccceEECCCCCEEEEEECCCCceEEEEE
Confidence 4 48888888 4456666655432111111 1 1123488899999999877 7888999999998
Q ss_pred cCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccC-CceEEeeecccccCCCCccccccccccccEE
Q psy9598 648 DGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVT 725 (1915)
Q Consensus 648 ~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 725 (1915)
+... .....+..|...+.+++|+|+|.+|++++ .++.+.||++.. +.... ....+...+.
T Consensus 159 ~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~ 220 (297)
T 2ojh_A 159 DIDS--GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE----------------RITDSAYGDW 220 (297)
T ss_dssp ETTT--CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE----------------ECCCCSEEEE
T ss_pred ECCC--CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE----------------EEecCCcccC
Confidence 5322 23455677888999999999999887766 599999998863 22111 1122446788
Q ss_pred EEEECCCCCEEEEEEecC-----------CeEEEEECCCCce--EEEeeCCCCCeEEEEEccCCCCEEEEEecCc
Q psy9598 726 MVAWDASDRWVITAINFN-----------FQIKIWDAFNGDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHDG 787 (1915)
Q Consensus 726 ~va~spdg~~L~t~s~~D-----------g~I~vwD~~tg~~--i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG 787 (1915)
+++|+|+|.+|++++. + +.|++||+.+++. +..+.+|...|.+++|+| ++.+|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~-~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSY-DADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEE-ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-TSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEc-CCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-CCCEEEEEEecc
Confidence 9999999999998876 4 5799999998876 444558888999999999 889888887653
No 200
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.84 E-value=3.1e-21 Score=205.40 Aligned_cols=104 Identities=29% Similarity=0.475 Sum_probs=93.5
Q ss_pred HHHHHHHHHH-HHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCCCC
Q psy9598 1534 KNECREVLET-LWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNKR 1612 (1915)
Q Consensus 1534 ~~~~~~ll~~-l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~~~ 1612 (1915)
...+..|+.. |+.++.++||+.||++..+||||+||++||||+||++||.++.|.++++|..||+|||.||++||+++
T Consensus 31 ~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~- 109 (158)
T 3uv4_A 31 SFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE- 109 (158)
T ss_dssp HHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC-
Confidence 3344444433 55688999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1613 SKIYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1613 s~i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
|.||.+|..|+++|++.++++...+.
T Consensus 110 s~i~~~A~~L~~~~~~~l~e~~~~l~ 135 (158)
T 3uv4_A 110 SQYTKTAQEIVNVCYQTLTEYDEHLT 135 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
No 201
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.84 E-value=3e-21 Score=213.52 Aligned_cols=105 Identities=34% Similarity=0.534 Sum_probs=98.9
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHh
Q psy9598 113 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG--DNYESPIDFVKDVKRVFHNSR 190 (1915)
Q Consensus 113 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~--~~Y~~~~~f~~D~~Lif~N~~ 190 (1915)
.....+++.|+.||..|++++.+++|.+||+. ++||||+||++||||+||++||++ +.|.++++|.+||+|||.||+
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~ 155 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 155 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 35567899999999999999999999999995 589999999999999999999998 789999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 191 NYNQNKRSKIYIMTTRLSEFAEEHLRRLT 219 (1915)
Q Consensus 191 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 219 (1915)
+||+++ |.||.+|..|+++|+++|++++
T Consensus 156 ~yN~~~-s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 156 EFNEPD-SEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHSCTT-CHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHhC
Confidence 999976 9999999999999999999874
No 202
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=1.7e-18 Score=212.13 Aligned_cols=272 Identities=9% Similarity=-0.038 Sum_probs=209.1
Q ss_pred CCcEEEEEEcCCCCEEEEEEC-------CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEEC
Q psy9598 476 LSAVFCVLFDKLGEVIVTGAD-------DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNL 547 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~-------Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~La-Sgs~DgtIrVWDl 547 (1915)
...+.+++|+|+|++|++++. ++.|.+||+.+++.+..+... ..+.+++|+++|++|+ ++..++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 357889999999999998874 568999999999998888743 4578899999999555 4455799999999
Q ss_pred CCCceEEEeecCCCC---------eEEEEeccCccCCCcEEEEEe--CCCeEEEEecccCccccceeccCccccccccCC
Q psy9598 548 QTLAPISVLVGHQGI---------ITGVNFCPLEVNGFNYLASTS--TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 548 ~tg~~~~~l~~h~~~---------V~sl~fsp~~~~d~~~L~sgs--~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
.+++.+..+..+... +.+++|+|++ .+|++++ .++.|.+||+.++.....+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg----~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~------------ 182 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT----NTVYISGIGKESVIWVVDGGNIKLKTAIQN------------ 182 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT----TEEEEEEESSSCEEEEEETTTTEEEEEECC------------
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCC----CEEEEEecCCCceEEEEcCCCCceEEEecC------------
Confidence 999998888765432 7899999953 5566555 588999999987754333221
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec----cCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEE
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE----EHSDKVDSIQWSHSHLRFVSGSR-DGTALIWY 691 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~----~h~~~V~sl~fspdg~~L~sgs~-DG~I~IWD 691 (1915)
+...+.+++|+|+|.+|++++.++.|.+||+.. ...+..+. ++...+.+++|+|+|.+|++++. ++.|.+||
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 259 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNADGELITIDTAD---NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD 259 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECTTSEEEEEETTT---TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred CCCccceEEECCCCCEEEEEcCCCeEEEEECCC---CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 123467889999999999999999999999843 23333333 25567889999999997776665 59999999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEE
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~ 771 (1915)
+.+++....... .. ...++|+++|.+++++...++.|.+||+.+++.+..+..+. .+.+++
T Consensus 260 ~~~~~~~~~~~~---------------~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 320 (353)
T 3vgz_A 260 TRNGNILAKVAA---------------PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLA 320 (353)
T ss_dssp TTTCCEEEEEEC---------------SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEE
T ss_pred CCCCcEEEEEEc---------------CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEE
Confidence 988875442210 01 13589999999888887658999999999999998887654 689999
Q ss_pred EccCCCCEEEEEecCc
Q psy9598 772 SHPFDSRVLLSAGHDG 787 (1915)
Q Consensus 772 ~sp~dg~~LaSgs~DG 787 (1915)
|+| ++++|++++.++
T Consensus 321 ~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 321 LSA-DGKTLYVSVKQK 335 (353)
T ss_dssp ECT-TSCEEEEEEECC
T ss_pred EcC-CCCEEEEEEccc
Confidence 999 888776666553
No 203
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.84 E-value=9e-19 Score=213.06 Aligned_cols=288 Identities=10% Similarity=0.029 Sum_probs=200.9
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCcc-ccc
Q psy9598 525 AIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDID-ISK 601 (1915)
Q Consensus 525 afspdg~-~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~-~~~ 601 (1915)
.|..++. .+++++.++.|.+||+.+++.+..+..+...+ +++|+|++ .+|++++ .++.|.+||+.++.. ...
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg----~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDC----SNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSS----CEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCC----CEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 4555544 46777889999999999999988888777777 99999953 6555555 489999999988754 222
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC---eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH---HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg---~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L 678 (1915)
.. .+.....+++|+|+|++|+++..++ .|.+||+.. ...+..+. +...+.+++|+|+|++|
T Consensus 79 ~~------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~---~~~~~~~~-~~~~~~~~~~spdg~~l 142 (331)
T 3u4y_A 79 IQ------------EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK---NKFISTIP-IPYDAVGIAISPNGNGL 142 (331)
T ss_dssp EE------------ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT---TEEEEEEE-CCTTEEEEEECTTSSCE
T ss_pred cc------------cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC---CCeEEEEE-CCCCccceEECCCCCEE
Confidence 21 1223344499999999999666553 899999843 23344443 34457899999999855
Q ss_pred E-EEeCCCc-EEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce
Q psy9598 679 V-SGSRDGT-ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL 756 (1915)
Q Consensus 679 ~-sgs~DG~-I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~ 756 (1915)
+ ++..++. |.+|++.......... .. .......+..++|+|+|++|++++..++.|.+||+.+++.
T Consensus 143 ~~~~~~~~~~i~~~~~~~~g~~~~~~--~~----------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 143 ILIDRSSANTVRRFKIDADGVLFDTG--QE----------FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEEEETTTTEEEEEEECTTCCEEEEE--EE----------EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred EEEecCCCceEEEEEECCCCcEeecC--Cc----------cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 5 4456688 9999987544221110 00 0012344688999999998888776689999999999998
Q ss_pred ---EEEeeCCCCCeEEEEEccCCCCEEEEE-ecCceEEEEECCCCccccceeeeeee--cCCCCcceEEEEEcCCCCEEE
Q psy9598 757 ---VQVLKGHTNEVFVLESHPFDSRVLLSA-GHDGLIIIWDILSSKQRGYKWFHNIV--EGQGEGALFDGKWSPDGTTCA 830 (1915)
Q Consensus 757 ---i~~l~gH~~~V~sl~~sp~dg~~LaSg-s~DG~I~IWdl~s~~~~~~~~~~~~~--~~~~~~~V~~vafSpdg~~La 830 (1915)
+..+..+ ..+..++|+| ++++|+++ ..++.|.+||+.+++...+..+...+ .......+.+++|+|||++|+
T Consensus 211 ~~~~~~~~~~-~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 211 ITLLNAVGTN-NLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp CEEEEEEECS-SCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred cceeeeccCC-CCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 8777755 5678899999 88866555 45889999999987663233222111 111112235689999999887
Q ss_pred EEeC-CCeEEEEeCCCCc
Q psy9598 831 LTDS-YGHLLVYGLGGFK 847 (1915)
Q Consensus 831 sg~~-dG~I~Iwdl~s~~ 847 (1915)
+++. ++.|.||++....
T Consensus 289 v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 289 ISANISRELKVFTISGKV 306 (331)
T ss_dssp EEETTTTEEEEEETTSCE
T ss_pred EecCCCCcEEEEEecCCc
Confidence 6654 5699999998754
No 204
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=3.9e-19 Score=240.38 Aligned_cols=284 Identities=13% Similarity=0.087 Sum_probs=208.4
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-----Cc
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-----LA 551 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t-----g~ 551 (1915)
..|.+++|||+ .+|+.++ ++.|++||+.++++.. +..|...+.+++|+|||++||++ .++.|++|++.+ +.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666554 5899999999887654 44577789999999999999985 589999999998 87
Q ss_pred eEEEeecCCCC--------------eEEEEeccCccCCCcEEEEEe---------------------------------C
Q psy9598 552 PISVLVGHQGI--------------ITGVNFCPLEVNGFNYLASTS---------------------------------T 584 (1915)
Q Consensus 552 ~~~~l~~h~~~--------------V~sl~fsp~~~~d~~~L~sgs---------------------------------~ 584 (1915)
.......+... +.++.|+|+ +++|++++ .
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD----g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~ 233 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK----GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH 233 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT----SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCC----CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence 76655544443 489999994 58888887 4
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC-----eEEEEEecCCCCCceeEEe
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH-----HVRVYKMDGVDSPLGILEV 659 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~~~~i~~l 659 (1915)
++.|.+||+.++....... ...+...+.+++|+|+|++|++++.++ .|.+||+.+......+..
T Consensus 234 ~~~l~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~- 302 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT----------GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV- 302 (706)
T ss_dssp EEEEEEEETTTTEEEECCC----------CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-
T ss_pred eeEEEEEECCCCceEeecc----------CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-
Confidence 5789999998764321110 113456789999999999999988775 899999854311111211
Q ss_pred ccCCC---CeeEEEEcC--CCCEEEEEeCCCcEEEEEcc-CCceEEeeecccccCCCCccccccccccccEEE-EEECCC
Q psy9598 660 EEHSD---KVDSIQWSH--SHLRFVSGSRDGTALIWYYK-CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM-VAWDAS 732 (1915)
Q Consensus 660 ~~h~~---~V~sl~fsp--dg~~L~sgs~DG~I~IWDl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-va~spd 732 (1915)
..+.. .+.+++|+| +|.+|++++.||.++||.+. .+..... ...+...+.. ++|+|+
T Consensus 303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~----------------l~~~~~~v~~~~~~spd 366 (706)
T 2z3z_A 303 ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ----------------VTKGEWEVTNFAGFDPK 366 (706)
T ss_dssp EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE----------------CCCSSSCEEEEEEECTT
T ss_pred ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe----------------cCCCCeEEEeeeEEcCC
Confidence 12222 346789999 99999999999999999876 3332111 1123445655 799999
Q ss_pred CCEEEEEEecCC----eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecC----ceEEEEECCCCc
Q psy9598 733 DRWVITAINFNF----QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD----GLIIIWDILSSK 798 (1915)
Q Consensus 733 g~~L~t~s~~Dg----~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~D----G~I~IWdl~s~~ 798 (1915)
|..|++++..++ .|+.||+.++. +..+. |...+.+++|+| ++++|+.++.+ +.|++||+.+++
T Consensus 367 g~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 367 GTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 999988877454 78888888776 33443 677799999999 88887766543 569999998765
No 205
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=2.8e-19 Score=212.04 Aligned_cols=259 Identities=17% Similarity=0.190 Sum_probs=192.7
Q ss_pred EEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc-CccccceeccCccccccc
Q psy9598 535 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-DIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 535 Sgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~-~~~~~~~~~~~~~~~~~~ 613 (1915)
+++.|++|++||+.++... .+..|...|.+++|+|+ +.+|++++ ++.|.+||+.+ +........
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spd----g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~--------- 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPD----GKYLLLNS-EGLLYRLSLAGDPSPEKVDTG--------- 81 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTT----SSEEEEEE-TTEEEEEESSSCCSCEECCCT---------
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCC----CCEEEEEc-CCeEEEEeCCCCCCceEeccc---------
Confidence 3467899999999988766 45568999999999994 47888876 78999999988 643211110
Q ss_pred cCCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEeCCCcEEEE
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALIW 690 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs--~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~DG~I~IW 690 (1915)
.+...+.+++|+|+|.+|++++ .++.+.||.++..... ...+..+ ..+.+++|+|+|.+|+ +++.++.+.||
T Consensus 82 --~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 82 --FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT--PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIY 156 (297)
T ss_dssp --TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC--CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred --cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc--eEEeecC-CCccceEECCCCCEEEEEECCCCceEEE
Confidence 1235678899999999999998 4456677766422221 2333333 3489999999999877 78899999999
Q ss_pred EccC--CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEEeeCCCCCe
Q psy9598 691 YYKC--SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQVLKGHTNEV 767 (1915)
Q Consensus 691 Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~-tg~~i~~l~gH~~~V 767 (1915)
++.. +... ....+...+.+++|+|+|.+|++++..++.+.||++. .+..+..+..|...+
T Consensus 157 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 219 (297)
T 2ojh_A 157 SMDIDSGVET-----------------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD 219 (297)
T ss_dssp EEETTTCCEE-----------------ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE
T ss_pred EEECCCCcce-----------------EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc
Confidence 8653 2211 1123456789999999999998877558899999886 566778888888899
Q ss_pred EEEEEccCCCCEEEEEecC-----------ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCC
Q psy9598 768 FVLESHPFDSRVLLSAGHD-----------GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYG 836 (1915)
Q Consensus 768 ~sl~~sp~dg~~LaSgs~D-----------G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG 836 (1915)
.+++|+| ++.+|++++.+ +.|++||+.++....+..+. .+.+.+.+++|+|+|.+|++++.+.
T Consensus 220 ~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 220 WFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-----GGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-----ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-----CCCcccccceECCCCCEEEEEEecc
Confidence 9999999 99998888766 57999999887652222221 2456788999999999998887653
No 206
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6.7e-21 Score=196.28 Aligned_cols=96 Identities=27% Similarity=0.380 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy9598 116 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 195 (1915)
Q Consensus 116 ~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~ 195 (1915)
.+|+..|..||+.|++++.++||.+| +||||+||++||||+||++||.++.|.++++|..||+|||.||++||++
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~ 85 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPD 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46889999999999999999999999 8999999999999999999999999999999999999999999999997
Q ss_pred CCCH----HHHHHHHHHHHHHHHHHH
Q psy9598 196 KRSK----IYIMTTRLSEFAEEHLRR 217 (1915)
Q Consensus 196 ~~s~----i~~~a~~l~~~f~~~~~~ 217 (1915)
+ |+ |+.+|..|++.|...++.
T Consensus 86 ~-s~~~~~i~~~A~~L~~~~~~~l~~ 110 (131)
T 2dkw_A 86 K-DPGDKIIRHRACTLKDTAHAIIAA 110 (131)
T ss_dssp S-STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 7 74 679999999999988853
No 207
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=7.8e-19 Score=213.23 Aligned_cols=294 Identities=12% Similarity=0.038 Sum_probs=209.3
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEeCCC-C-CEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceEEEeec-C----C
Q psy9598 489 EVIVTGADDLLIKLWRARDGKLLATLRGCS-G-EISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLVG-H----Q 560 (1915)
Q Consensus 489 ~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~-~-~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~~~~l~~-h----~ 560 (1915)
.+|++++.++.|.+||+.+++.+..+.... . .+.+++|+|+|++| ++++.++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 478999999999999999999988886332 2 48899999999766 4555678999999999998877653 2 2
Q ss_pred CCeEEEEeccCccCCCcEEEEEe------------CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 561 GIITGVNFCPLEVNGFNYLASTS------------TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~~L~sgs------------~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
..+.+++|+|+ +.+|++++ .++.|.+||+.++.....+.. ...+.+++|+|
T Consensus 82 ~~~~~~~~s~d----g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~~s~ 144 (337)
T 1pby_B 82 KSLFGAALSPD----GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------------PRQITMLAWAR 144 (337)
T ss_dssp ECTTCEEECTT----SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------------CSSCCCEEECT
T ss_pred ccccceEECCC----CCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-------------CCCcceeEECC
Confidence 26778999984 47787776 579999999987654322221 13467889999
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEE--EEccCCceEEeeecccc
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI--WYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~I--WDl~~~~~~~~~~~~~~ 706 (1915)
+|++|+++ ++.|.+||+.+ ...+..+..+.. ...+.|+|+|..|+.++..+.... |.....
T Consensus 145 dg~~l~~~--~~~i~~~d~~~---~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~----------- 207 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEA---GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARK----------- 207 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTT---TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT-----------
T ss_pred CCCEEEEe--CCeEEEEECCC---CcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccc-----------
Confidence 99988888 68999999843 233333433321 112368899887766655444332 211100
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE-EEeeCCCCCeEEEEEccCCCCEEEEEec
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV-QVLKGHTNEVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i-~~l~gH~~~V~sl~~sp~dg~~LaSgs~ 785 (1915)
.++..... .. ...|.+||+.+++.. ..+..|...+.+++|+| ++.+|+++
T Consensus 208 ------------------------~~~~~~~~-~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~-- 258 (337)
T 1pby_B 208 ------------------------DIDPADPT-AY-RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA-- 258 (337)
T ss_dssp ------------------------TSCTTSGG-GE-EEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--
T ss_pred ------------------------cccccccc-cc-ccceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--
Confidence 00000000 00 236889999988774 23446667789999999 89988888
Q ss_pred CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 786 DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 786 DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
++.|.+||+.+++. +..+. ....+.+++|+|+|++|++++.++.|.+|++.+++.+..++
T Consensus 259 ~~~v~~~d~~~~~~--~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 259 YNVLESFDLEKNAS--IKRVP------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp ESEEEEEETTTTEE--EEEEE------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEECCCCcC--cceec------CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 79999999998776 44443 22457899999999999999999999999999887665554
No 208
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.83 E-value=4.9e-21 Score=203.95 Aligned_cols=101 Identities=29% Similarity=0.514 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHcCCC-------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhh
Q psy9598 1534 KNECREVLETLWVCPD-------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRN 1606 (1915)
Q Consensus 1534 ~~~~~~ll~~l~~~~~-------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~ 1606 (1915)
+++|..||..|+++.+ ++||+.||+..++||||+||++||||+||++||++|.|.++++|..||+|||.||+.
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5679999999998665 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1607 YNQNKRSKIYIMTTRLSEFAEEHLRRLTV 1635 (1915)
Q Consensus 1607 yN~~~~s~i~~~a~~l~~~f~~~~~~~~~ 1635 (1915)
||+++ |.||.+|..|+++|+++|+++..
T Consensus 106 yN~~~-s~i~~~A~~L~~~f~~~~~~l~~ 133 (150)
T 3tlp_A 106 YNEEG-SQVYNDAHILEKLLKEKRKELGP 133 (150)
T ss_dssp HSCTT-SHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HCCCC-CHHHHHHHHHHHHHHHHHHHccC
Confidence 99987 99999999999999999999874
No 209
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=3.3e-19 Score=241.66 Aligned_cols=314 Identities=14% Similarity=0.090 Sum_probs=215.6
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCC---CeEEEEeccCccCCCcEEEEEeCC---------Ce
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQG---IITGVNFCPLEVNGFNYLASTSTD---------GC 587 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~---~V~sl~fsp~~~~d~~~L~sgs~D---------gt 587 (1915)
.+.+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|+|+ +++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpD----g~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD----REYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT----SSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCC----CCEEEEEecCccceeecceee
Confidence 4678999999998776 7899999999999999888887765 4999999994 5889988764 78
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCC--
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK-- 665 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~-- 665 (1915)
|.+||+.++.. ..+.. ...+...+.+++|||+|+.|++++. +.|++|++.+.. .......+...
T Consensus 93 i~~~d~~~~~~-~~l~~---------~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~---~~~~~~~~~~~~~ 158 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDP---------PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ---AIRVVSTGKEGVI 158 (723)
T ss_dssp EEEEESSSCCC-EECCC---------TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC---CEEEECCCBTTTE
T ss_pred EEEEECCCCce-EeccC---------CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc---eEEEecCCCCCce
Confidence 88999988753 11111 1123345788999999999999886 799999985432 22222333332
Q ss_pred ----------------eeEEEEcCCCCEEEEEeCCC----------------------------------cEEEEEccCC
Q psy9598 666 ----------------VDSIQWSHSHLRFVSGSRDG----------------------------------TALIWYYKCS 695 (1915)
Q Consensus 666 ----------------V~sl~fspdg~~L~sgs~DG----------------------------------~I~IWDl~~~ 695 (1915)
+.+++|+|+|++|++++.|+ .|.+||+.++
T Consensus 159 ~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 159 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred ECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 37899999999999887653 6778887766
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec---CCeEEEEECCCCceEEEeeC-CCCCeE---
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---NFQIKIWDAFNGDLVQVLKG-HTNEVF--- 768 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---Dg~I~vwD~~tg~~i~~l~g-H~~~V~--- 768 (1915)
...... .. ......+...+..++|+|||++|+++... +..|++||+.++++...+.. |.+.+.
T Consensus 239 ~~~~~l-------~~---~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 308 (723)
T 1xfd_A 239 THDLEM-------MP---PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQN 308 (723)
T ss_dssp CCCEEC-------CC---CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCC
T ss_pred ceeEEe-------eC---CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccC
Confidence 521110 00 00111235678999999999988776541 35799999999998777654 344443
Q ss_pred -EEEEccCCCCEEEE--EecCc------eEEEEE-CCCCccccceeeeeeecCCCCcceEE-EEEcCCCCEEEEEeCC--
Q psy9598 769 -VLESHPFDSRVLLS--AGHDG------LIIIWD-ILSSKQRGYKWFHNIVEGQGEGALFD-GKWSPDGTTCALTDSY-- 835 (1915)
Q Consensus 769 -sl~~sp~dg~~LaS--gs~DG------~I~IWd-l~s~~~~~~~~~~~~~~~~~~~~V~~-vafSpdg~~Lasg~~d-- 835 (1915)
.++|+| +++.|+. +..+| .|.+|| ..++.......+. .+...+.. ++|+|||+.|++++.+
T Consensus 309 ~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-----~~~~~~~~~~~~spdg~~l~~~~~~~~ 382 (723)
T 1xfd_A 309 EEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-----SGDWDVTKILAYDEKGNKIYFLSTEDL 382 (723)
T ss_dssp CCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-----CSSSCEEEEEEEETTTTEEEEEESSSC
T ss_pred CCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee-----cCCeEEEeeeEEcCCCCEEEEEEcCCC
Confidence 789999 8876554 45677 577777 4444400011111 12334444 6999999999877655
Q ss_pred -CeEEEEeCCCCc--ccccC---------CCceeecCCCCeeeec
Q psy9598 836 -GHLLVYGLGGFK--RPQNI---------PRELFFHTDYRTLNRP 868 (1915)
Q Consensus 836 -G~I~Iwdl~s~~--~~~~l---------~~~~~F~~d~~~Lv~~ 868 (1915)
+.+.||.+.... ....+ ...+.|++|++.++..
T Consensus 383 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 383 PRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp TTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred CcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 788999886422 22222 1257899999887743
No 210
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-21 Score=211.34 Aligned_cols=104 Identities=20% Similarity=0.280 Sum_probs=96.0
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCC--CcCCHHHHHHHhcCC---CCCCHHHHHHHHHHHHHH
Q psy9598 114 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVI--APMDLGTIREELRGD---NYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 114 ~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk--~Pmdl~ti~~kl~~~---~Y~~~~~f~~D~~Lif~N 188 (1915)
..+..++.|..||..|++|+.+|||++||+ |+||+||+ +||||+||++||+++ .|.++++|++||+|||+|
T Consensus 73 m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N 148 (189)
T 2ro1_A 73 LSPANQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQ 148 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHH
Confidence 344556789999999999999999999999 78999998 899999999999999 999999999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9598 189 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 223 (1915)
Q Consensus 189 ~~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 223 (1915)
|++||+ + +.+|.+|..|+++|+++|+++....+
T Consensus 149 ~~~yN~-~-s~~~~~a~~L~~~Fe~~~~~~~~~~~ 181 (189)
T 2ro1_A 149 FNKLTE-D-KADVQSIIGLQRFFETRMNEAFGDTK 181 (189)
T ss_dssp HHHHCC-S-SCSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHCC-C-CHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999995 5 88999999999999999999977643
No 211
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.82 E-value=1e-20 Score=212.80 Aligned_cols=108 Identities=28% Similarity=0.480 Sum_probs=101.2
Q ss_pred cCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcC---CCCCCHHHHHHHHHHHHHH
Q psy9598 112 LKRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG---DNYESPIDFVKDVKRVFHN 188 (1915)
Q Consensus 112 ~~~~~~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~---~~Y~~~~~f~~D~~Lif~N 188 (1915)
....+.+++.|+.||..|++++.++||++||+. .+||||+||++||||+||++||++ +.|.++++|.+||+|||.|
T Consensus 76 ~~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~N 154 (207)
T 3u5n_A 76 QGLSPVDQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKN 154 (207)
T ss_dssp CSSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999997 799999999999999999999997 7999999999999999999
Q ss_pred HhhhcC-----------------CCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 189 SRNYNQ-----------------NKRSKIYIMTTRLSEFAEEHLRRLTVR 221 (1915)
Q Consensus 189 ~~~yN~-----------------~~~s~i~~~a~~l~~~f~~~~~~~~~~ 221 (1915)
|++||+ ++ +.|+++|..|+.+|+++|+++...
T Consensus 155 a~~yN~~~s~v~~~A~~l~~~~~~~-s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 155 CERFNEMMKVVQVYADTQEINLKAD-SEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHHHHC----------CCC-CHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHCCCcchHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999998 66 999999999999999999998664
No 212
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.82 E-value=3e-18 Score=208.55 Aligned_cols=292 Identities=12% Similarity=0.097 Sum_probs=198.5
Q ss_pred cCCCeEEEecccC-CceeeeEEecCCCCcEEEEEEcCCCCEEEEEECC-CcEEEEECC--CCc--EEEEEeCCCCCEEEE
Q psy9598 451 PLSRSLMISSHKY-SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADD-LLIKLWRAR--DGK--LLATLRGCSGEISDI 524 (1915)
Q Consensus 451 ~~d~~~~i~~~~~-~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~D-g~I~IWd~~--tg~--~~~~l~gH~~~I~~L 524 (1915)
+.++.+.+|+... ..+..... ..|...+.+++|+|+|++|++++.+ +.|.+|++. ++. .+..+..+. .+.++
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 89 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHI 89 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEE
T ss_pred CCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEE
Confidence 5678888886642 23333333 4678899999999999999999887 999999997 565 445555444 78999
Q ss_pred EEeCCCCEEEEEeC-CCcEEEEECC---CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe-CCCeEEEEeccc-Ccc
Q psy9598 525 AIDNRNILLAAGTV-DKTIRIWNLQ---TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKL-DID 598 (1915)
Q Consensus 525 afspdg~~LaSgs~-DgtIrVWDl~---tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~-~~~ 598 (1915)
+|+|++++|++++. ++.|.+||+. ++..+..+..+ ..+.+++|+|+ +.+|++++ .++.|.+||+.+ +..
T Consensus 90 ~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~d----g~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 90 STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPD----NRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTT----SSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred EEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCC----CCEEEEecCCCCEEEEEEecCCCce
Confidence 99999998877665 8899999994 34455555444 45889999994 46667666 899999999986 432
Q ss_pred ccce--eccCccccccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEecCCCC-CceeEEec----cC--CCCeeE
Q psy9598 599 ISKT--VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDS-PLGILEVE----EH--SDKVDS 668 (1915)
Q Consensus 599 ~~~~--~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~~~~~-~~~i~~l~----~h--~~~V~s 668 (1915)
.... ... ......+.+++|+|+|.+|++++ .++.|.+|++..... ......+. ++ ...+.+
T Consensus 165 ~~~~~~~~~---------~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T 1ri6_A 165 VAQDPAEVT---------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 235 (343)
T ss_dssp EEEEEEEEE---------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred eeecccccc---------cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence 1111 111 11224678899999999776554 789999999953221 11122221 11 235678
Q ss_pred EEEcCCCCEEE-EEeCCCcEEEEEcc--CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy9598 669 IQWSHSHLRFV-SGSRDGTALIWYYK--CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745 (1915)
Q Consensus 669 l~fspdg~~L~-sgs~DG~I~IWDl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~ 745 (1915)
++|+|+|.+|+ ++..++.|.+||+. ++....... .. ....+..++|+|+|.+|++++..++.
T Consensus 236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~-~~~~~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF--------------QP-TETQPRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE--------------EE-CSSSCCCEEECTTSSEEEEECTTTCE
T ss_pred eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee--------------ec-CCCccceEEECCCCCEEEEecCCCCe
Confidence 99999998777 45579999999998 333222110 00 11226779999999999998865899
Q ss_pred EEEE--ECCCCce--EEEeeCCCCCeEEEEEcc
Q psy9598 746 IKIW--DAFNGDL--VQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 746 I~vw--D~~tg~~--i~~l~gH~~~V~sl~~sp 774 (1915)
|.+| |..++.. +..+... ....+++|.+
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~ 332 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNA 332 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEECS-SSCCEEEEEE
T ss_pred EEEEEEcCCCceeeEccccccC-CCCeeEEEEc
Confidence 9999 5556643 3444432 3345666666
No 213
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=5.4e-18 Score=207.65 Aligned_cols=286 Identities=10% Similarity=-0.004 Sum_probs=213.3
Q ss_pred CCCEEEEEEeCCCCEEEEEeC-------CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 518 SGEISDIAIDNRNILLAAGTV-------DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~-------DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
...+..++|+|++++|++++. ++.|.+||+.+++.+..+... ..+.+++|+|++ ..+++++..++.|.+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg---~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTT---QTLWFGNTVNSAVTA 115 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTT---TEEEEEETTTTEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCC---CEEEEEecCCCEEEE
Confidence 356889999999998888874 568999999999988887643 457889999943 235566667899999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
||+.++..+..+........ .......+.+++|+|+|.+|++++ .++.|.+||+. ....+..+..+...+.+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRT---EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG---NIKLKTAIQNTGKMSTG 189 (353)
T ss_dssp EETTTCCEEEEEESCCCCCC---SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT---TTEEEEEECCCCTTCCC
T ss_pred EeCCCCeeEEEEecCCCccc---cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC---CCceEEEecCCCCccce
Confidence 99998875544433211000 000112378899999999877776 47899999984 33445555556667889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 669 IQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 669 l~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
++|+|+|.+|++++.++.|.+||+.+++....... ...++...+..++|+|+|.+|++++..++.|.+
T Consensus 190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 257 (353)
T 3vgz_A 190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKL------------LDDGKEHFFINISLDTARQRAFITDSKAAEVLV 257 (353)
T ss_dssp CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC------------CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc------------CCCCCCcccceEEECCCCCEEEEEeCCCCEEEE
Confidence 99999999999999999999999998875432211 011234567889999999999888875699999
Q ss_pred EECCCCceEEEeeCCCCCeEEEEEccCCCCEEE-EEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCC
Q psy9598 749 WDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL-SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT 827 (1915)
Q Consensus 749 wD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~La-Sgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~ 827 (1915)
||+.+++.+..+..+.. .+++|+| ++++|+ ++..++.|.+||+.+++. +..+. ....+.+++|+|||+
T Consensus 258 ~d~~~~~~~~~~~~~~~--~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~------~~~~~~~~~~s~dg~ 326 (353)
T 3vgz_A 258 VDTRNGNILAKVAAPES--LAVLFNP-ARNEAYVTHRQAGKVSVIDAKSYKV--VKTFD------TPTHPNSLALSADGK 326 (353)
T ss_dssp EETTTCCEEEEEECSSC--CCEEEET-TTTEEEEEETTTTEEEEEETTTTEE--EEEEE------CCSEEEEEEECTTSC
T ss_pred EECCCCcEEEEEEcCCC--ceEEECC-CCCEEEEEECCCCeEEEEECCCCeE--EEEEe------cCCCCCeEEEcCCCC
Confidence 99999999888875543 5689999 777554 455799999999998876 54443 234678999999999
Q ss_pred EEEEEeCCC
Q psy9598 828 TCALTDSYG 836 (1915)
Q Consensus 828 ~Lasg~~dG 836 (1915)
+|+++...+
T Consensus 327 ~l~v~~~~~ 335 (353)
T 3vgz_A 327 TLYVSVKQK 335 (353)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEccc
Confidence 888776653
No 214
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=5e-18 Score=208.35 Aligned_cols=295 Identities=11% Similarity=0.101 Sum_probs=195.8
Q ss_pred EEEEEEC----CCcEEEEEC--CCCcEEE-EEeCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCc--eEEEee
Q psy9598 490 VIVTGAD----DLLIKLWRA--RDGKLLA-TLRGCSGEISDIAIDNRNILLAAGTV---DKTIRIWNLQTLA--PISVLV 557 (1915)
Q Consensus 490 ~LaTGs~----Dg~I~IWd~--~tg~~~~-~l~gH~~~I~~Lafspdg~~LaSgs~---DgtIrVWDl~tg~--~~~~l~ 557 (1915)
.|++|+. ++.|.+|.+ .++.+.. ....+...+..|+|+|+|+ |++++. ++.|.+|++.++. .+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 4555543 445666655 4666543 3344567788999999999 555543 6899999997766 444555
Q ss_pred cCCCCeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCcccccee-ccCccccccccCCCCCceEEEEECCCCcEEEE
Q psy9598 558 GHQGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTV-FHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 635 (1915)
Q Consensus 558 ~h~~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 635 (1915)
.+...+..++|+|+ +.+|++++ .+++|.+|++.......... +..... ..........+.+++|+|+|+++++
T Consensus 83 ~~~~~p~~~a~spd----g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~spdg~l~v~ 157 (347)
T 3hfq_A 83 APGTPPAYVAVDEA----RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH-GPRPEQDGSHIHYTDLTPDNRLAVI 157 (347)
T ss_dssp EESCCCSEEEEETT----TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC-CSSTTCSSCCEEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEECCC----CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC-CCCccccCCCceEEEECCCCcEEEE
Confidence 67788999999994 47777777 78999999996432211111 100000 0001112346889999999997777
Q ss_pred EeCCCeEEEEEecCCCCCceeEEeccC-CCCeeEEEEcCCCCEEEE-EeCCCcEEEEEccC--CceEEeeecccccCCCC
Q psy9598 636 GSGDHHVRVYKMDGVDSPLGILEVEEH-SDKVDSIQWSHSHLRFVS-GSRDGTALIWYYKC--SQWRFIRLDMNTCLPHT 711 (1915)
Q Consensus 636 gs~Dg~I~IwDl~~~~~~~~i~~l~~h-~~~V~sl~fspdg~~L~s-gs~DG~I~IWDl~~--~~~~~~~~~~~~~~~~~ 711 (1915)
+..++.|.+|++........+..+..+ ...+..++|+|+|++|++ +..++.|.+|++.. +.+..... .. ..+.
T Consensus 158 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-~~-~~~~- 234 (347)
T 3hfq_A 158 DLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI-VK-TIPA- 234 (347)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-EE-SSCT-
T ss_pred eCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee-ee-ecCC-
Confidence 777899999999622222222222222 336788999999996655 56789999999885 44322110 00 0000
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC---CCceEEEeeCCCCCeEEEEEccCCCCEEEEEec-Cc
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF---NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-DG 787 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~---tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~-DG 787 (1915)
.......+..++|+|+|++|+++...++.|.+|++. ....+..+..|...+..++|+| ++++|++++. ++
T Consensus 235 -----~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~ 308 (347)
T 3hfq_A 235 -----DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTD 308 (347)
T ss_dssp -----TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEEEEETTTT
T ss_pred -----CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCC
Confidence 011224688999999999997776658999999987 3356667777777789999999 8988887775 48
Q ss_pred eEEEEEC--CCCcc
Q psy9598 788 LIIIWDI--LSSKQ 799 (1915)
Q Consensus 788 ~I~IWdl--~s~~~ 799 (1915)
.|.||++ .+++.
T Consensus 309 ~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 309 NATLYARDLTSGKL 322 (347)
T ss_dssp EEEEEEECTTTCCE
T ss_pred cEEEEEEeCCCCeE
Confidence 9999955 45554
No 215
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.82 E-value=7.1e-21 Score=209.02 Aligned_cols=105 Identities=31% Similarity=0.497 Sum_probs=99.5
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNY 1607 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~y 1607 (1915)
.......+.|..||..|++++.++||+.||+...+||||++|++||||+||++||++|.|.++++|..||+|||.||++|
T Consensus 68 ~l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 147 (174)
T 2ri7_A 68 PLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYY 147 (174)
T ss_dssp BCCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9598 1608 NQNKRSKIYIMTTRLSEFAEEHLRRL 1633 (1915)
Q Consensus 1608 N~~~~s~i~~~a~~l~~~f~~~~~~~ 1633 (1915)
|+++ |.+|.+|..|+++|+++++.+
T Consensus 148 N~~~-s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 148 NPSD-SPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp SCTT-SHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHhc
Confidence 9988 999999999999999998765
No 216
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.82 E-value=2.1e-20 Score=193.71 Aligned_cols=100 Identities=23% Similarity=0.345 Sum_probs=93.8
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..++..|..+|+.|+.++.++||..||+..++||||++|++||||+||++||.+|.|.++++|..||+|||.||+.||++
T Consensus 9 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 88 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPD 88 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHH----HHHHHHHHHHHHHHHH
Q psy9598 1611 KRSKI----YIMTTRLSEFAEEHLR 1631 (1915)
Q Consensus 1611 ~~s~i----~~~a~~l~~~f~~~~~ 1631 (1915)
+ |++ |.+|..|++.+...++
T Consensus 89 ~-s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 89 R-DPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp S-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-ChhHHHHHHHHHHHHHHHHHHHH
Confidence 7 755 7888999988888886
No 217
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.80 E-value=4.1e-20 Score=204.41 Aligned_cols=105 Identities=34% Similarity=0.534 Sum_probs=99.2
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcC--CCCCCHHHHHHHHHHHHHHhh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG--DNYESPIDFVKDVKRVFHNSR 1605 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~--~~Y~s~~ef~~Dv~lif~Na~ 1605 (1915)
...+.+++.|+.||..|+.++.++||+.||+. ++|+||+||++||||+||++||++ +.|.++++|..||+|||.||+
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~ 155 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 155 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999995 589999999999999999999998 789999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1606 NYNQNKRSKIYIMTTRLSEFAEEHLRRLT 1634 (1915)
Q Consensus 1606 ~yN~~~~s~i~~~a~~l~~~f~~~~~~~~ 1634 (1915)
+||+++ |.||.+|..|+++|+++++++.
T Consensus 156 ~yN~~~-s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 156 EFNEPD-SEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHSCTT-CHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCC-CHHHHHHHHHHHHHHHHHHHhC
Confidence 999987 9999999999999999998864
No 218
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-20 Score=190.44 Aligned_cols=96 Identities=27% Similarity=0.375 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..|+..|..||+.|++++.++||..| +||||+||++||||+||++||.+|.|.++++|..||+|||.||++||++
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~ 85 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPD 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46788999999999999999999998 8999999999999999999999999999999999999999999999998
Q ss_pred CCC----HHHHHHHHHHHHHHHHHHH
Q psy9598 1611 KRS----KIYIMTTRLSEFAEEHLRR 1632 (1915)
Q Consensus 1611 ~~s----~i~~~a~~l~~~f~~~~~~ 1632 (1915)
+ | .||.+|..|++.|...++.
T Consensus 86 ~-s~~~~~i~~~A~~L~~~~~~~l~~ 110 (131)
T 2dkw_A 86 K-DPGDKIIRHRACTLKDTAHAIIAA 110 (131)
T ss_dssp S-STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 8 7 4789999999999988853
No 219
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=7.4e-19 Score=238.21 Aligned_cols=342 Identities=11% Similarity=-0.014 Sum_probs=222.5
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCC---CEEEEEEeCCCCEEEEEeC---------CCcEEEEECC
Q psy9598 481 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSG---EISDIAIDNRNILLAAGTV---------DKTIRIWNLQ 548 (1915)
Q Consensus 481 ~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~---~I~~Lafspdg~~LaSgs~---------DgtIrVWDl~ 548 (1915)
+++|+|+|.+++++ .|+.|++||+.+++....+.+|.. .|.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 68999999665554 699999999999998887776644 4899999999999999876 7899999999
Q ss_pred CCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC---------C
Q psy9598 549 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN---------A 619 (1915)
Q Consensus 549 tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 619 (1915)
+++.+... .....+.+++|+|+ ++.|++++ ++.|++|++.++........... ...+.++. .
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPD----G~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~---~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPV----GSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE---NKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSS----TTCEEEEE-TTEEEEESSTTSCCEECCCCCBT---TTEEESSCCHHHHHHTTC
T ss_pred CCccccce-ecCcccccceECCC----CCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc---CCeEcccccceeeeeccc
Confidence 98762111 11356889999995 47888875 78999999988754321111000 00001111 1
Q ss_pred ceEEEEECCCCcEEEEEeCCC----------------------------------eEEEEEecCCCCC--cee---EEec
Q psy9598 620 HILCSSFSPGGLFLATGSGDH----------------------------------HVRVYKMDGVDSP--LGI---LEVE 660 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg----------------------------------~I~IwDl~~~~~~--~~i---~~l~ 660 (1915)
...+++|||||++|++++.|. .|++||+.+.... ..+ ..+.
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence 125899999999999987652 7889998532210 011 1234
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCC----CcEEEEE----ccCCceEEeeecccccCCCCccccccccccccEE-----EE
Q psy9598 661 EHSDKVDSIQWSHSHLRFVSGSRD----GTALIWY----YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVT-----MV 727 (1915)
Q Consensus 661 ~h~~~V~sl~fspdg~~L~sgs~D----G~I~IWD----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-----~v 727 (1915)
+|...+.+++|+|++.+++++... ..|.+|| +.++++..+.. .....+...+. .+
T Consensus 250 ~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~------------~~~~~~~~~~~~~~~~~~ 317 (719)
T 1z68_A 250 SSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE------------HIEESRTGWAGGFFVSTP 317 (719)
T ss_dssp TSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE------------EEEECSSSCSSSSSCCCC
T ss_pred CCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe------------cccccCCceEccccCCcc
Confidence 688889999999998777764433 2488888 66554321110 00011222333 67
Q ss_pred EECCCCCEEEEE-EecCC--eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEec-----CceEEEEECCC--C
Q psy9598 728 AWDASDRWVITA-INFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-----DGLIIIWDILS--S 797 (1915)
Q Consensus 728 a~spdg~~L~t~-s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~-----DG~I~IWdl~s--~ 797 (1915)
+|+|+|+.|+.. +..+| .|++||+.++. ...+..+...|..+.++ ++..|+..+. ++.+.||.+.. +
T Consensus 318 ~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~--d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 318 VFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV--TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE--CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred EECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE--eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 899999976653 32244 67888887776 45666666678887777 4454554444 48899998764 3
Q ss_pred ccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe-CC--CeEEEEeCCCCccc
Q psy9598 798 KQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SY--GHLLVYGLGGFKRP 849 (1915)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~-~d--G~I~Iwdl~s~~~~ 849 (1915)
... ...+...+ ..+...+..+.|+|||++|+..+ .. ..+.+|++.++++.
T Consensus 395 ~~~-~~~l~~~~-~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 395 PPS-KKCVTCHL-RKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp SCC-EEESSTTT-TTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred CCC-ceeccCcc-CCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 210 11111000 11345678899999999877543 22 46889998877643
No 220
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=2.2e-16 Score=194.96 Aligned_cols=313 Identities=11% Similarity=0.032 Sum_probs=203.4
Q ss_pred CCCCEEEEEEC----CCcEEEEEC--CCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCC--Cce-
Q psy9598 486 KLGEVIVTGAD----DLLIKLWRA--RDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD----KTIRIWNLQT--LAP- 552 (1915)
Q Consensus 486 pdg~~LaTGs~----Dg~I~IWd~--~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D----gtIrVWDl~t--g~~- 552 (1915)
+...++++|+. ++.|.+|.+ .++.+......|...+..|+|+|+|++|++++.+ +.|.+|++.. +..
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 33456666653 568888865 5666544332277788899999999999999876 7999998865 443
Q ss_pred -EEEeecCCCCeEEEEeccCccCCCcEEEEE-eCCCeEEEEecccCccccceecc--CccccccccCCCCCceEEEEECC
Q psy9598 553 -ISVLVGHQGIITGVNFCPLEVNGFNYLAST-STDGCIGFWKYKLDIDISKTVFH--EPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 553 -~~~l~~h~~~V~sl~fsp~~~~d~~~L~sg-s~DgtI~iWDl~~~~~~~~~~~~--~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
+..+..+...+..+++ + +.+|+++ ..+++|.+|++.....+...... ...........+...+.+++|+|
T Consensus 91 ~~~~~~~~~~~p~~~~~--d----g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--N----GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp EEEEEECSSSCEEEEEE--C----SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred EeeEeccCCCCcEEEEE--C----CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence 3344445566777777 2 2455554 47899999999765432222110 00000000112234578999999
Q ss_pred CCcEEEEEe-CCCeEEEEEecCCCC------Cce----eEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCc
Q psy9598 629 GGLFLATGS-GDHHVRVYKMDGVDS------PLG----ILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQ 696 (1915)
Q Consensus 629 dg~~Lasgs-~Dg~I~IwDl~~~~~------~~~----i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~ 696 (1915)
+|++|++++ .++.|.+|++..... ... ......+...+.+++|+|+|++|++++ .++.|.+|++.++.
T Consensus 165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 999666554 588999999964332 111 111233455678999999999887777 68999999998775
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec-CCeEEEEECC--CCc--eEEEeeCCCCCeEEEE
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF-NFQIKIWDAF--NGD--LVQVLKGHTNEVFVLE 771 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~-Dg~I~vwD~~--tg~--~i~~l~gH~~~V~sl~ 771 (1915)
+...... .....+......++|+|+|++|+++... ++.|.+|++. ++. .+..+.. ...+.+++
T Consensus 245 ~~~~~~~-----------~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~ 312 (361)
T 3scy_A 245 LDEIQTV-----------AADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFI 312 (361)
T ss_dssp EEEEEEE-----------ESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEE
T ss_pred eEEeEEE-----------ecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEE
Confidence 4322110 0011123345789999999999988874 5899999985 455 4445554 55688999
Q ss_pred EccCCCCEEEEEe-cCceEEEEECC--CCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 772 SHPFDSRVLLSAG-HDGLIIIWDIL--SSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 772 ~sp~dg~~LaSgs-~DG~I~IWdl~--s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
|+| ++++|++++ .++.|.+|.+. +++. .... ...+...+.|++|.
T Consensus 313 ~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~--~~~~----~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 313 ITP-NGKYLLVACRDTNVIQIFERDQATGLL--TDIK----KDIKVDKPVCLKFV 360 (361)
T ss_dssp ECT-TSCEEEEEETTTTEEEEEEECTTTCCE--EECS----CCEECSSEEEEEEE
T ss_pred ECC-CCCEEEEEECCCCCEEEEEEECCCCcE--eecc----eeeeCCCCeEEEEc
Confidence 999 999888877 67899997554 5544 1111 11123467888875
No 221
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=4.9e-18 Score=224.29 Aligned_cols=269 Identities=9% Similarity=0.009 Sum_probs=196.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCceEEEeecCC-CCeEEEEeccCccCCCcEEEEEeC---CCeEEEEe
Q psy9598 518 SGEISDIAIDNRNILLAAGTV-DKTIRIWNLQTLAPISVLVGHQ-GIITGVNFCPLEVNGFNYLASTST---DGCIGFWK 592 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~-DgtIrVWDl~tg~~~~~l~~h~-~~V~sl~fsp~~~~d~~~L~sgs~---DgtI~iWD 592 (1915)
..+|.+++|+|||+.||+++. ||+++||++.++.... +..|. ..|.+++|+| + .++++++. +....+|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~sp----d-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGV----G-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTC----S-EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCC----C-eEEEEeccCCCCcceEEEE
Confidence 457999999999999999887 9999999997666544 44454 6899999998 3 67777765 45567776
Q ss_pred ccc--CccccceeccCccccccccCCCCCceEEEEECCCCc--EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 593 YKL--DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL--FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 593 l~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~--~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
+.. ......+ . .. ..+...+|+|+|+ .+++++. +.+.|||+.+. . ...+..+.. .+
T Consensus 95 ~~~~~~g~~~~l--~----------~~-~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g---~-~~~l~~~~~--~~ 154 (582)
T 3o4h_A 95 VNTSRPGEEQRL--E----------AV-KPMRILSGVDTGEAVVFTGATE-DRVALYALDGG---G-LRELARLPG--FG 154 (582)
T ss_dssp EETTSTTCCEEC--T----------TS-CSBEEEEEEECSSCEEEEEECS-SCEEEEEEETT---E-EEEEEEESS--CE
T ss_pred EeccCCCccccc--c----------CC-CCceeeeeCCCCCeEEEEecCC-CCceEEEccCC---c-EEEeecCCC--ce
Confidence 654 2111111 0 11 1233567777775 3444444 45559999543 2 222223333 88
Q ss_pred EEEcCCCCEEEEEeCC----CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy9598 669 IQWSHSHLRFVSGSRD----GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744 (1915)
Q Consensus 669 l~fspdg~~L~sgs~D----G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg 744 (1915)
++|+|+|++|++++.+ +.|++||+.+++...+ ..+...+..++|+|||++|+++.. ++
T Consensus 155 ~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l-----------------~~~~~~~~~~~~SpDG~~l~~~~~-~~ 216 (582)
T 3o4h_A 155 FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF-----------------DSGEGSFSSASISPGMKVTAGLET-AR 216 (582)
T ss_dssp EEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE-----------------CCSSCEEEEEEECTTSCEEEEEEC-SS
T ss_pred EEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe-----------------ecCCCccccceECCCCCEEEEccC-CC
Confidence 9999999999988877 7899999988774421 234566799999999999996665 88
Q ss_pred --eEEEEECCCCceEEEeeCCCCCeEEEE--------EccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCC
Q psy9598 745 --QIKIWDAFNGDLVQVLKGHTNEVFVLE--------SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE 814 (1915)
Q Consensus 745 --~I~vwD~~tg~~i~~l~gH~~~V~sl~--------~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~ 814 (1915)
.|++||+.+++.. .+.+|...+..++ |+| ++.++++++.||+++||++ ++. .. ...
T Consensus 217 ~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~--~~--------~~~ 282 (582)
T 3o4h_A 217 EARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GER--VE--------APQ 282 (582)
T ss_dssp CEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEE--EC--------CCS
T ss_pred eeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCe--ec--------cCC
Confidence 8999999999888 8888888777777 999 8899999999999999999 554 22 123
Q ss_pred cceEEEEEcCCCCEEEEEeCCCe---EEEEeCCC
Q psy9598 815 GALFDGKWSPDGTTCALTDSYGH---LLVYGLGG 845 (1915)
Q Consensus 815 ~~V~~vafSpdg~~Lasg~~dG~---I~Iwdl~s 845 (1915)
+.|.+++|+ +|.++++++.+.. |++|++.+
T Consensus 283 ~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 283 GNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp SEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 568899999 9999998887754 77777664
No 222
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=3.5e-18 Score=225.65 Aligned_cols=278 Identities=7% Similarity=-0.068 Sum_probs=194.7
Q ss_pred CCcEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCcEEEEEeCCC-CCEEEEEEeCCCCEEEEEeC---CCcEEEEECCC-
Q psy9598 476 LSAVFCVLFDKLGEVIVTGAD-DLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILLAAGTV---DKTIRIWNLQT- 549 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~-Dg~I~IWd~~tg~~~~~l~gH~-~~I~~Lafspdg~~LaSgs~---DgtIrVWDl~t- 549 (1915)
..+|++++|+|||++||+++. ||++.||++.++.... +..|. ..|.+++|+|| ++|++++. +....||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 9999999996666544 54454 68999999999 78887775 45566655432
Q ss_pred --CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 550 --LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 550 --g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
+... .+..+. .+..++|+|++ ++.++++++.++. .+||+.++....... +.. .+++|+
T Consensus 99 ~~g~~~-~l~~~~-~~~~~~~s~dg--~~~~~~s~~~~~~-~l~d~~~g~~~~l~~-------------~~~--~~~~~s 158 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK-PMRILSGVDTG--EAVVFTGATEDRV-ALYALDGGGLRELAR-------------LPG--FGFVSD 158 (582)
T ss_dssp STTCCE-ECTTSC-SBEEEEEEECS--SCEEEEEECSSCE-EEEEEETTEEEEEEE-------------ESS--CEEEEE
T ss_pred CCCccc-cccCCC-CceeeeeCCCC--CeEEEEecCCCCc-eEEEccCCcEEEeec-------------CCC--ceEEEC
Confidence 3333 443322 34466888854 3345555555554 499998774321111 111 688999
Q ss_pred CCCcEEEEEeCC----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC--cEEEEEccCCceEEee
Q psy9598 628 PGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIR 701 (1915)
Q Consensus 628 pdg~~Lasgs~D----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG--~I~IWDl~~~~~~~~~ 701 (1915)
|||++|++++.+ +.|++||+.+.. ...+..|.+.+.+++|+|||+.|+++..+| .|++||+.+++.. ..
T Consensus 159 pDG~~la~~~~~~~~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~ 233 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGGRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL 233 (582)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC
T ss_pred CCCCEEEEEEEcCCCCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec
Confidence 999999988877 789999985332 235678889999999999999999888899 8999999988754 21
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEE
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~La 781 (1915)
..... .... .........+|+|||..+++++. ++.+++|++ |+++. .+.+.|.+++|+ ++.+++
T Consensus 234 ~~~~~------~~~~--~~~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~--g~~~~---~~~~~v~~~~~s--dg~~l~ 297 (582)
T 3o4h_A 234 ELPSK------DFSS--YRPTAITWLGYLPDGRLAVVARR-EGRSAVFID--GERVE---APQGNHGRVVLW--RGKLVT 297 (582)
T ss_dssp CCSCS------HHHH--HCCSEEEEEEECTTSCEEEEEEE-TTEEEEEET--TEEEC---CCSSEEEEEEEE--TTEEEE
T ss_pred cCCCc------Chhh--hhhccccceeEcCCCcEEEEEEc-CCcEEEEEE--CCeec---cCCCceEEEEec--CCEEEE
Confidence 10000 0000 00112334559999977777777 999999999 76554 344678899998 688888
Q ss_pred EEecCc---eEEEEECCC
Q psy9598 782 SAGHDG---LIIIWDILS 796 (1915)
Q Consensus 782 Sgs~DG---~I~IWdl~s 796 (1915)
+++.+. .|.+|+..+
T Consensus 298 ~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 298 SHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEETTEEEEEEEETTCC
T ss_pred EEcCCCCCCeEEEEcCCC
Confidence 888774 466776653
No 223
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=2.4e-17 Score=201.32 Aligned_cols=284 Identities=6% Similarity=-0.080 Sum_probs=194.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCC-CCEEEEEEeCCCCEEE-EEeCCCcEEEEECCCCceEEEeec
Q psy9598 481 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISVLVG 558 (1915)
Q Consensus 481 ~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~-~~I~~Lafspdg~~La-Sgs~DgtIrVWDl~tg~~~~~l~~ 558 (1915)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+|++++ +++.++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 46788899999999999999999999999998887553 2578999999998664 555789999999999998877763
Q ss_pred CC------CCeEEEEeccCccCCCcEEEEEeCC------------CeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 559 HQ------GIITGVNFCPLEVNGFNYLASTSTD------------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 559 h~------~~V~sl~fsp~~~~d~~~L~sgs~D------------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
+. ..+.+++|+|+ +.+|++++.+ +.|.+||+.++......... .+...
T Consensus 84 ~~~~~~~~~~~~~~~~spd----g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~ 149 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPD----GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF----------PMPRQ 149 (349)
T ss_dssp CCSTTEEEECSSCEEECTT----SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE----------ECCSS
T ss_pred ccccccccccccceEECCC----CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec----------cCCCc
Confidence 32 23789999994 4788888865 89999999875432211110 11235
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCC-C-----------------------CeeEEEEcCCCC
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS-D-----------------------KVDSIQWSHSHL 676 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~-~-----------------------~V~sl~fspdg~ 676 (1915)
+.+++|+|+|. |++++. .|.+||+.+. ..+..+..+. . ...++++++++.
T Consensus 150 ~~~~~~s~dg~-l~~~~~--~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 150 VYLMRAADDGS-LYVAGP--DIYKMDVKTG---KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp CCCEEECTTSC-EEEESS--SEEEECTTTC---CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred ccceeECCCCc-EEEccC--cEEEEeCCCC---ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 78899999999 665544 4999998432 2333332221 0 234456665442
Q ss_pred EEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECC-CCCEEEEEEecCCeEEEEECCCC
Q psy9598 677 RFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA-SDRWVITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 677 ~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp-dg~~L~t~s~~Dg~I~vwD~~tg 754 (1915)
...... ....+..+++.++....... ......+..++|+| +|.+|+++ ++.|.+||+.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~ 285 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEF---------------ADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQR 285 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEE---------------EECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTT
T ss_pred CCccccccceeEEEEeccCCcEEeccc---------------ccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccC
Confidence 110000 00111224444443222111 01334578899999 99999888 579999999999
Q ss_pred ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 755 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 755 ~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
+.+..+..+ ..+.+++|+| ++.+|++++.++.|.+||+.+++. +..+.
T Consensus 286 ~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~--~~~~~ 333 (349)
T 1jmx_B 286 KLIKAANLD-HTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEK--VKNIK 333 (349)
T ss_dssp EEEEEEECS-SCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEE--EEEEE
T ss_pred eEEEEEcCC-CCccceEECC-CCCEEEEecCCCeEEEEeccccce--eeeee
Confidence 988887643 3477899999 888888888899999999998876 55443
No 224
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.78 E-value=2.2e-19 Score=202.10 Aligned_cols=106 Identities=28% Similarity=0.495 Sum_probs=100.2
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcC---CCCCCHHHHHHHHHHHHHHh
Q psy9598 1528 KRPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRG---DNYESPIDFVKDVKRVFHNS 1604 (1915)
Q Consensus 1528 ~~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~---~~Y~s~~ef~~Dv~lif~Na 1604 (1915)
.+.+.+++.|+.||..|++++.++||+.||+. ++|+||+||++||||+||++||++ |.|.++++|..||+|||.||
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na 155 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNC 155 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999987 799999999999999999999997 79999999999999999999
Q ss_pred hhhcC-----------------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1605 RNYNQ-----------------NKRSKIYIMTTRLSEFAEEHLRRLTV 1635 (1915)
Q Consensus 1605 ~~yN~-----------------~~~s~i~~~a~~l~~~f~~~~~~~~~ 1635 (1915)
++||+ ++ |.|+.+|..|+++|+++|+++..
T Consensus 156 ~~yN~~~s~v~~~A~~l~~~~~~~-s~i~~~a~~L~~~fe~~~~~~~p 202 (207)
T 3u5n_A 156 ERFNEMMKVVQVYADTQEINLKAD-SEVAQAGKAVALYFEDKLTEIYS 202 (207)
T ss_dssp HHHHHHHHHHC----------CCC-CHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHCCCcchHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHHHHHhCC
Confidence 99998 66 99999999999999999999864
No 225
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.78 E-value=2.5e-17 Score=202.14 Aligned_cols=280 Identities=12% Similarity=0.074 Sum_probs=188.2
Q ss_pred cCCCeEEEecccCCceeee-EEecCCCCcEEEEEEcCCCCEEEEEEC---CCcEEEEECCCCc--EEEEEeCCCCCEEEE
Q psy9598 451 PLSRSLMISSHKYSNLRQH-YVNLGHLSAVFCVLFDKLGEVIVTGAD---DLLIKLWRARDGK--LLATLRGCSGEISDI 524 (1915)
Q Consensus 451 ~~d~~~~i~~~~~~~~~~~-~~l~gH~~~V~~vafspdg~~LaTGs~---Dg~I~IWd~~tg~--~~~~l~gH~~~I~~L 524 (1915)
+.++.+.+|..+...-.+. ..+..|...+.+++|+|+|+ |++++. ++.|.+|++.++. .+..+..|...+.+|
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 3455667776654332222 23445667888999999999 555544 6899999998776 455556677889999
Q ss_pred EEeCCCCEEEEEe-CCCcEEEEECC-CCc--eEEEeec---------CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEE
Q psy9598 525 AIDNRNILLAAGT-VDKTIRIWNLQ-TLA--PISVLVG---------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 591 (1915)
Q Consensus 525 afspdg~~LaSgs-~DgtIrVWDl~-tg~--~~~~l~~---------h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iW 591 (1915)
+|+|+|++|++++ .++.|.+|++. ++. .+..+.. +...+.+++|+|++ .+++++..++.|.+|
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg----~l~v~~~~~~~v~~~ 167 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN----RLAVIDLGSDKVYVY 167 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS----CEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC----cEEEEeCCCCEEEEE
Confidence 9999999888888 68999999996 333 2333321 12348899999954 577777788999999
Q ss_pred ecc-cCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE-EeCCCeEEEEEecCC-CCCceeEEeccCC-----
Q psy9598 592 KYK-LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT-GSGDHHVRVYKMDGV-DSPLGILEVEEHS----- 663 (1915)
Q Consensus 592 Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las-gs~Dg~I~IwDl~~~-~~~~~i~~l~~h~----- 663 (1915)
++. ++.......+. ......+..++|+|+|++|++ +..++.|.+|++... .....+..+....
T Consensus 168 ~~~~~g~~~~~~~~~---------~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (347)
T 3hfq_A 168 NVSDAGQLSEQSVLT---------MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTA 238 (347)
T ss_dssp EECTTSCEEEEEEEE---------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred EECCCCcEEEeeeEE---------cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence 998 33211111000 111235678999999996655 567889999999642 1112222333222
Q ss_pred -CCeeEEEEcCCCCEE-EEEeCCCcEEEEEccCC-ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEE
Q psy9598 664 -DKVDSIQWSHSHLRF-VSGSRDGTALIWYYKCS-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI 740 (1915)
Q Consensus 664 -~~V~sl~fspdg~~L-~sgs~DG~I~IWDl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s 740 (1915)
..+.+++|+|+|++| +++..++.|.+|++... ...... ....+...+..++|+|+|++|++++
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~--------------~~~~~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQ--------------QISTEGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEE--------------EEECSSSCCCEEEECTTSSEEEEEE
T ss_pred CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeE--------------EEecCCCCcCeEEECCCCCEEEEEE
Confidence 358899999999977 55667899999998632 211111 0111234467899999999999988
Q ss_pred ecCCeEEEE--ECCCCceEE
Q psy9598 741 NFNFQIKIW--DAFNGDLVQ 758 (1915)
Q Consensus 741 ~~Dg~I~vw--D~~tg~~i~ 758 (1915)
..++.|.+| |..+|++..
T Consensus 305 ~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 305 QNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TTTTEEEEEEECTTTCCEEE
T ss_pred cCCCcEEEEEEeCCCCeEEe
Confidence 756899999 555676553
No 226
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=199.32 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=94.3
Q ss_pred CchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCcccccc--CccchhhHHhhhcCC---CCCCHHHHHHHHHHHHHH
Q psy9598 1529 RPFNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVI--APMDLGTIREELRGD---NYESPIDFVKDVKRVFHN 1603 (1915)
Q Consensus 1529 ~~~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk--~Pmdl~tI~~kl~~~---~Y~s~~ef~~Dv~lif~N 1603 (1915)
+.+..++.|..||..|+.++.++||++||+ |+||+||+ +||||+||++||+++ .|.++++|+.||+|||+|
T Consensus 73 m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N 148 (189)
T 2ro1_A 73 LSPANQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQ 148 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHH
Confidence 344456789999999999999999999998 78999998 899999999999999 999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9598 1604 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 1636 (1915)
Q Consensus 1604 a~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 1636 (1915)
|++||+ + +.+|.+|..|+++|+++|+++...
T Consensus 149 ~~~yN~-~-s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 149 FNKLTE-D-KADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp HHHHCC-S-SCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHCC-C-CHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999994 5 889999999999999999998754
No 227
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.77 E-value=1.3e-17 Score=202.54 Aligned_cols=274 Identities=9% Similarity=-0.058 Sum_probs=198.5
Q ss_pred ccccCCCeEEEecccCCceeeeEEec-CCCC-cEEEEEEcCCCCEEE-EEECCCcEEEEECCCCcEEEEEeCC-----CC
Q psy9598 448 YSGPLSRSLMISSHKYSNLRQHYVNL-GHLS-AVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLRGC-----SG 519 (1915)
Q Consensus 448 ~tg~~d~~~~i~~~~~~~~~~~~~l~-gH~~-~V~~vafspdg~~La-TGs~Dg~I~IWd~~tg~~~~~l~gH-----~~ 519 (1915)
++++.++.+.+|+.... +....+. ++.. .+.+++|+|+|++|+ +++.++.|.+||+.+++.+..+... ..
T Consensus 5 v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 5 LAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEcCCCCeEEEEECCCC--cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 45667788888865433 3333443 3332 488999999998765 5556789999999999988877632 12
Q ss_pred CEEEEEEeCCCCEEEEEe------------CCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe
Q psy9598 520 EISDIAIDNRNILLAAGT------------VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 587 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs------------~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt 587 (1915)
.+.+++|+|+|++|++++ .++.|.+||+.+++.+..+.. ...+.+++|+|+ +.+|+++ ++.
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~d----g~~l~~~--~~~ 155 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD----GSKLYGL--GRD 155 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT----SSCEEEE--SSS
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCC----CCEEEEe--CCe
Confidence 577899999999998886 579999999999988877764 456788999994 4777777 688
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC------------------------eEE
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH------------------------HVR 643 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg------------------------~I~ 643 (1915)
|.+||+.++.......... ... .+.|+|+|..|++++..+ .|.
T Consensus 156 i~~~d~~~~~~~~~~~~~~----------~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 156 LHVMDPEAGTLVEDKPIQS----------WEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp EEEEETTTTEEEEEECSTT----------TTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred EEEEECCCCcEeeeeeccc----------cCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence 9999998876433322210 001 125778877665444322 468
Q ss_pred EEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 644 VYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 644 IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
+||+.+.. .. ...+..+...+.+++|+|+|.+|+++ ++.|.+||+.+++...... ....
T Consensus 223 ~~d~~~~~-~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----------------~~~~ 281 (337)
T 1pby_B 223 TMDLETGE-MA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-----------------LPHS 281 (337)
T ss_dssp EEETTTCC-EE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-----------------CSSC
T ss_pred EEeCCCCC-ce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-----------------CCCc
Confidence 89985432 12 34455677788999999999999888 7999999998876443211 1134
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC
Q psy9598 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
+.+++|+|+|++|++++. ++.|.+||+.+++.+..+..+.+
T Consensus 282 ~~~~~~s~dg~~l~~~~~-~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 282 YYSVNVSTDGSTVWLGGA-LGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp CCEEEECTTSCEEEEESB-SSEEEEEETTTCCEEEEEECGGG
T ss_pred eeeEEECCCCCEEEEEcC-CCcEEEEECcCCcEEEEEEcCCC
Confidence 678999999999999876 99999999999999988875543
No 228
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=7.4e-17 Score=196.97 Aligned_cols=308 Identities=10% Similarity=-0.003 Sum_probs=197.0
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCC-CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 523 DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ-GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 523 ~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~-~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
.+++++++.++++++.+++|.+||+.+++.+..+..+. ..+.+++|+|++ ..++++++.++.|.+||+.++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN---RTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS---SEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC---CEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 45678889999999999999999999999888887543 257899999843 23455666789999999988764433
Q ss_pred eeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC------------CeEEEEEecCCCCCceeEEeccCCCCeeEE
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD------------HHVRVYKMDGVDSPLGILEVEEHSDKVDSI 669 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D------------g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl 669 (1915)
....... ......+.+++|+|+|++|++++.+ +.|.+||+.+......+..+. +...+.++
T Consensus 81 ~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~ 153 (349)
T 1jmx_B 81 ANLSSVP------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLM 153 (349)
T ss_dssp EESCCST------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCE
T ss_pred EEccccc------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccce
Confidence 3221000 0001236789999999999998865 899999995432222233333 34468899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCC-----ccc---cccccccccEEEEEECCCCCEEEEEEe
Q psy9598 670 QWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT-----KET---SDETNKKIKVTMVAWDASDRWVITAIN 741 (1915)
Q Consensus 670 ~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~V~~va~spdg~~L~t~s~ 741 (1915)
+|+|+|. +++++. .|.+||+.+++............+.. ... ............+++++++........
T Consensus 154 ~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 230 (349)
T 1jmx_B 154 RAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 230 (349)
T ss_dssp EECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred eECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence 9999999 665544 49999999887554321110000000 000 000000113445777766532211111
Q ss_pred cCCeEEEEECCCCce-EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEE
Q psy9598 742 FNFQIKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDG 820 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~~-i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~v 820 (1915)
....+..++..+++. +..+..+...+.+++|+|.++.+|+++ ++.|.+||+.+++. +..+. ....+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~--~~~~~------~~~~~~~~ 300 (349)
T 1jmx_B 231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL--IKAAN------LDHTYYCV 300 (349)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE--EEEEE------CSSCCCEE
T ss_pred cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE--EEEEc------CCCCccce
Confidence 011223355555542 112234566789999998567777777 88999999998876 44443 12357789
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 821 KWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 821 afSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
+|+|+|++|++++.++.|.+|++.+++.+..++
T Consensus 301 ~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 301 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 999999999989889999999999887766543
No 229
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=1.4e-16 Score=216.62 Aligned_cols=341 Identities=14% Similarity=0.049 Sum_probs=220.1
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCC-----EEEEEEeCCCCEEEEEeCC---------CcEE
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGE-----ISDIAIDNRNILLAAGTVD---------KTIR 543 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~-----I~~Lafspdg~~LaSgs~D---------gtIr 543 (1915)
...+++|+|+|.+|+++ ||.|++||+.++++...+.+|... ...++|||||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35579999999999987 899999999999998888888643 2447899999999999876 5667
Q ss_pred EEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC-----
Q psy9598 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN----- 618 (1915)
Q Consensus 544 VWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~----- 618 (1915)
|||+.++++. .+..|.+.+..++|+|+ ++.|+.++ ++.|.+|++.++.... +...... ...+.++.
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPd----G~~la~~~-~~~i~~~~~~~~~~~~-lt~~g~~--~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPV----GHKLAYVW-NNDIYVKIEPNLPSYR-ITWTGKE--DIIYNGITDWVYE 166 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSS----TTCEEEEE-TTEEEEESSTTSCCEE-CCSCCBT--TTEEESBCCHHHH
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCC----CCEEEEEE-CCeEEEEECCCCceEE-EcCCCCc--cceecCccccccc
Confidence 9999998754 46678889999999995 48888874 6899999998775322 1111000 00000111
Q ss_pred ----CceEEEEECCCCcEEEEEeCCC------------------------------------eEEEEEecC---CCCCce
Q psy9598 619 ----AHILCSSFSPGGLFLATGSGDH------------------------------------HVRVYKMDG---VDSPLG 655 (1915)
Q Consensus 619 ----~~V~~l~fspdg~~Lasgs~Dg------------------------------------~I~IwDl~~---~~~~~~ 655 (1915)
+....+.|||||+.||.++.|. .|+|||+.+ ... ..
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~-~~ 245 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN-AT 245 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC-CC
T ss_pred chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc-ce
Confidence 2224589999999999875322 477788754 211 02
Q ss_pred eEEec------cCCCCeeEEEEcCCCCEEEEEeC----CCcEEEEEccCCc----eEEeeecccccCCCCcccccccccc
Q psy9598 656 ILEVE------EHSDKVDSIQWSHSHLRFVSGSR----DGTALIWYYKCSQ----WRFIRLDMNTCLPHTKETSDETNKK 721 (1915)
Q Consensus 656 i~~l~------~h~~~V~sl~fspdg~~L~sgs~----DG~I~IWDl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1915)
...+. +|...+..++|+|+|+.++.... +..|.+||+.+++ +....... ...+.
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~------------~~~~~ 313 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI------------EMSTT 313 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE------------EECSS
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee------------eccCC
Confidence 22332 37788999999999996665533 3479999998876 22110000 00111
Q ss_pred cc-----EEEEEECCCCCEEE-EEEecCC--eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCE-EEEEec----Cc-
Q psy9598 722 IK-----VTMVAWDASDRWVI-TAINFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV-LLSAGH----DG- 787 (1915)
Q Consensus 722 ~~-----V~~va~spdg~~L~-t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~-LaSgs~----DG- 787 (1915)
.. ...++|+|||+.|+ ..+..+| .|++||+.++.+.....+ ...|..+.+ + ++.. +++++. .+
T Consensus 314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~~-~-d~~~i~f~~~~~~~~~~~ 390 (740)
T 4a5s_A 314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGIEA-L-TSDYLYYISNEYKGMPGG 390 (740)
T ss_dssp SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEEEE-E-CSSEEEEEESCGGGCTTC
T ss_pred ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEEEE-E-eCCEEEEEEecCCCCCce
Confidence 11 23578999999887 6654344 688899987766554444 445665543 4 3454 444443 23
Q ss_pred -eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCcc
Q psy9598 788 -LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY---GHLLVYGLGGFKR 848 (1915)
Q Consensus 788 -~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~d---G~I~Iwdl~s~~~ 848 (1915)
.|+..++.++.. ...+...+ ....+.+..+.|||+|.+++..... ..+.++++.+++.
T Consensus 391 ~~ly~v~~~g~~~--~~~lt~~~-~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 391 RNLYKIQLIDYTK--VTCLSCEL-NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp BEEEEEETTEEEE--EEESSTTT-STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred eEEEEEECCCCCc--ceeecccc-CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence 444445443322 11111000 1123568899999999988776544 4678888877654
No 230
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.75 E-value=5.2e-16 Score=191.54 Aligned_cols=295 Identities=11% Similarity=0.050 Sum_probs=196.0
Q ss_pred ccCCCeEEEecccC--CceeeeEEecCCCCcEEEEEEcCCCCEEEEEECC----CcEEEEECCC--Cc--EEEEEeCCCC
Q psy9598 450 GPLSRSLMISSHKY--SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADD----LLIKLWRARD--GK--LLATLRGCSG 519 (1915)
Q Consensus 450 g~~d~~~~i~~~~~--~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~D----g~I~IWd~~t--g~--~~~~l~gH~~ 519 (1915)
++.++.+.+|..+. ..+.....+ |...+.+++|+|+|++|++++.+ +.|.+|++.. |. .+..+..+..
T Consensus 23 ~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~ 100 (361)
T 3scy_A 23 SGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA 100 (361)
T ss_dssp SSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred CCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence 34456777776543 334444444 78888999999999999999986 7999998765 54 3444555666
Q ss_pred CEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceEEE------eec--------CCCCeEEEEeccCccCCCcEEE-EEe
Q psy9598 520 EISDIAIDNRNILLAAGT-VDKTIRIWNLQTLAPISV------LVG--------HQGIITGVNFCPLEVNGFNYLA-STS 583 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs-~DgtIrVWDl~tg~~~~~------l~~--------h~~~V~sl~fsp~~~~d~~~L~-sgs 583 (1915)
.+..+++ ++++|++++ .++.|.+|++.+...+.. ..+ +...+.+++|+|+ +++|+ ++.
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd----g~~l~~~~~ 174 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD----GKYLLADDL 174 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT----SSEEEEEET
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC----CCEEEEEeC
Confidence 7888888 788777766 588999999975432211 111 1234588999994 46554 455
Q ss_pred CCCeEEEEecccCcc------ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEecCCCCCcee
Q psy9598 584 TDGCIGFWKYKLDID------ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDSPLGI 656 (1915)
Q Consensus 584 ~DgtI~iWDl~~~~~------~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~~~~~~~~i 656 (1915)
.++.|.+|++..... +...... ..........+.+++|+|+|++|++++ .++.|.+|++... ....+
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g-~~~~~ 248 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTP-----EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG-MLDEI 248 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEE-----EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-EEEEE
T ss_pred CCCEEEEEEEcCCCCcccccceeecccc-----cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-ceEEe
Confidence 689999999876542 1110000 000112235578999999999887777 6899999999532 22222
Q ss_pred EEe---ccCCCCeeEEEEcCCCCEEEEEeCC--CcEEEEEcc--CCceEEeeecccccCCCCccccccccccccEEEEEE
Q psy9598 657 LEV---EEHSDKVDSIQWSHSHLRFVSGSRD--GTALIWYYK--CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 657 ~~l---~~h~~~V~sl~fspdg~~L~sgs~D--G~I~IWDl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
..+ ..+...+.+++|+|+|++|+++..+ +.|.+|++. ++....... .. ....+..++|
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~--------------~~-~g~~~~~~~~ 313 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY--------------QL-TGIHPRNFII 313 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE--------------EE-CSSCCCEEEE
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE--------------ec-CCCCCceEEE
Confidence 222 3344557899999999988776654 899999986 344322110 00 0234568999
Q ss_pred CCCCCEEEEEEecCCeEEEE--ECCCCceEEEe-eCCCCCeEEEEEc
Q psy9598 730 DASDRWVITAINFNFQIKIW--DAFNGDLVQVL-KGHTNEVFVLESH 773 (1915)
Q Consensus 730 spdg~~L~t~s~~Dg~I~vw--D~~tg~~i~~l-~gH~~~V~sl~~s 773 (1915)
+|+|++|++++..++.|.+| |..++++.... ..+...+.||.|.
T Consensus 314 spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 314 TPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99999999998658999996 55577765544 2345568888875
No 231
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=5.5e-17 Score=205.95 Aligned_cols=250 Identities=15% Similarity=0.204 Sum_probs=173.2
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC-----------cEEE----EEeCCCCCEEEEEEeCCCCEEE----E
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG-----------KLLA----TLRGCSGEISDIAIDNRNILLA----A 535 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg-----------~~~~----~l~gH~~~I~~Lafspdg~~La----S 535 (1915)
+...++++++++++.+|++|+.+| |+||+.... .... ....|.+.|++|+|+++|++|| +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345688999999999999999997 889875311 1110 1123567899999999999999 7
Q ss_pred EeCCCcEEEEECCCC--------ce---EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec
Q psy9598 536 GTVDKTIRIWNLQTL--------AP---ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 604 (1915)
Q Consensus 536 gs~DgtIrVWDl~tg--------~~---~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~ 604 (1915)
|+.|++|+|||+.++ ++ +..+.+|...|++|+|+|. ++.+|++|+.||+|++||++++.....
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~---~~~~las~s~Dg~v~iwD~~~~~~~~~--- 187 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT---VPSMVAVCLADGSIAVLQVTETVKVCA--- 187 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS---CTTEEEEEETTSCEEEEEESSSEEEEE---
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC---CCCEEEEEECCCeEEEEEcCCCcceee---
Confidence 888999999998754 22 4556789999999999994 258999999999999999987732111
Q ss_pred cCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc-------CCCCeeEEEEcCCCCE
Q psy9598 605 HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-------HSDKVDSIQWSHSHLR 677 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-------h~~~V~sl~fspdg~~ 677 (1915)
..+|...|.+++|+|+|.+|++|+.||.|++||+++ .....+.. |...|.+++|++++.+
T Consensus 188 ---------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 188 ---------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL----QEKKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp ---------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC----CEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred ---------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC----cccccccCCcccCCCCceeEEEEEEecCceE
Confidence 113557899999999999999999999999999851 12222322 3348999999998877
Q ss_pred EEE-EeCCCc------EEEEEccCCce---EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy9598 678 FVS-GSRDGT------ALIWYYKCSQW---RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 747 (1915)
Q Consensus 678 L~s-gs~DG~------I~IWDl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~ 747 (1915)
+++ ++.+|. +++|++....- .........+.. ..........+.+-++..+++++++..+.|.
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~ 327 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYG-------SCTERQHHYYLSYIEEWDLVLAASAASTEVS 327 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCC-------CCSSSCCCEEEEEEGGGTEEEEEETTCSBCE
T ss_pred EEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCC-------CCCCcCcceeeehhccCCEEEEecCCCCcee
Confidence 654 334433 89999976421 010000000000 0011122223444467778888777566677
Q ss_pred EEEC
Q psy9598 748 IWDA 751 (1915)
Q Consensus 748 vwD~ 751 (1915)
|+..
T Consensus 328 vl~~ 331 (434)
T 2oit_A 328 ILAR 331 (434)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
No 232
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.74 E-value=3.2e-17 Score=222.10 Aligned_cols=320 Identities=12% Similarity=0.053 Sum_probs=212.7
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCC---CeEEEEeccCccCCCcEEEEEeC---------CCeEEE
Q psy9598 523 DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQG---IITGVNFCPLEVNGFNYLASTST---------DGCIGF 590 (1915)
Q Consensus 523 ~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~---~V~sl~fsp~~~~d~~~L~sgs~---------DgtI~i 590 (1915)
+++|+|+|.++++ +.|++|++||+.++.+...+.+|.. .|.+++|+|+ +++|++++. ++.|.+
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpD----g~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPD----RQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTT----SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCC----CCeEEEEecCceeEEeecceEEEE
Confidence 7899999966555 4699999999999998887776654 4899999994 588888876 789999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCe----
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKV---- 666 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V---- 666 (1915)
||+.++..+....+ ...+.+++|||||+.|+++. ++.|++|++.+... ..+ ...++...|
T Consensus 95 ~d~~~g~~~~~~~l-------------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~-~~l-~~~~~~~~v~~g~ 158 (719)
T 1z68_A 95 YDLSNGEFVRGNEL-------------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP-FQI-TFNGRENKIFNGI 158 (719)
T ss_dssp EETTTTEECCSSCC-------------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC-EEC-CCCCBTTTEEESS
T ss_pred EECCCCccccceec-------------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc-EEE-ecCCCcCCeEccc
Confidence 99988754211111 13477899999999999885 78999999854321 111 112332222
Q ss_pred -------------eEEEEcCCCCEEEEEeCCC----------------------------------cEEEEEccCCceE-
Q psy9598 667 -------------DSIQWSHSHLRFVSGSRDG----------------------------------TALIWYYKCSQWR- 698 (1915)
Q Consensus 667 -------------~sl~fspdg~~L~sgs~DG----------------------------------~I~IWDl~~~~~~- 698 (1915)
.+++|+|+|++|++++.|. .|++||+.++...
T Consensus 159 ~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~ 238 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG 238 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC
T ss_pred ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc
Confidence 4899999999999988652 6778887766521
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec-C--CeEEEEE----CCCCceEEEe----eCCCCCe
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF-N--FQIKIWD----AFNGDLVQVL----KGHTNEV 767 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~-D--g~I~vwD----~~tg~~i~~l----~gH~~~V 767 (1915)
...+ ........+...+..++|+||+.++++.... + ..|.+|| +.++++...+ .+|.+.|
T Consensus 239 ~~~~---------~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 239 PQEV---------PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp CEEC---------CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred eeEc---------cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 0000 0001123466788999999998777665431 1 2589999 8888776666 4777777
Q ss_pred E-----EEEEccCCCCEEE--EEecCc--eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCC---
Q psy9598 768 F-----VLESHPFDSRVLL--SAGHDG--LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY--- 835 (1915)
Q Consensus 768 ~-----sl~~sp~dg~~La--Sgs~DG--~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~d--- 835 (1915)
. .+.|+| ++..|+ ++..+| .|.+|++.++.. ..+. .+...|..+.++ ++..|++.+.+
T Consensus 310 ~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~lt-----~~~~~v~~~~~~-d~~~i~~~~~~~~~ 379 (719)
T 1z68_A 310 GGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVENA---IQIT-----SGKWEAINIFRV-TQDSLFYSSNEFEE 379 (719)
T ss_dssp SSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCSTTC---EECS-----CSSSCEEEEEEE-CSSEEEEEESCGGG
T ss_pred ccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCCce---Eecc-----cCceEEEEEEEE-eCCEEEEEEecCCC
Confidence 6 889999 777444 344555 577777766553 2221 234457777777 88888877765
Q ss_pred --CeEEEEeCCC--C----ccccc-C------CCceeecCCCCeeeecC-C---CccceeecccCC
Q psy9598 836 --GHLLVYGLGG--F----KRPQN-I------PRELFFHTDYRTLNRPN-G---LFEPTYDEVTNL 882 (1915)
Q Consensus 836 --G~I~Iwdl~s--~----~~~~~-l------~~~~~F~~d~~~Lv~~~-~---~~~~v~D~~t~~ 882 (1915)
+.+.||.+.. + .++.. + ...+.|++|+..++... . ..+.+||..++.
T Consensus 380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 7788887653 3 12211 1 12467888888766321 1 123466665543
No 233
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=3.4e-16 Score=194.78 Aligned_cols=305 Identities=9% Similarity=-0.048 Sum_probs=204.1
Q ss_pred EEEEECCCCcEEEEEeCCCCCEEE-----EEEeCCCCEEEEEeC-CC--cEEEEECCCCceEEEeecCCCCeEEEEeccC
Q psy9598 500 IKLWRARDGKLLATLRGCSGEISD-----IAIDNRNILLAAGTV-DK--TIRIWNLQTLAPISVLVGHQGIITGVNFCPL 571 (1915)
Q Consensus 500 I~IWd~~tg~~~~~l~gH~~~I~~-----Lafspdg~~LaSgs~-Dg--tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~ 571 (1915)
...++..+|..+..+..|...+.. .+|+|||++|+.++. ++ .|.+||+.++.......+|...+.++.|+|+
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 345678889999999988877776 899999999999887 66 4888999999888777777777767889994
Q ss_pred ccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE--EEEECCCCcEEEEE-------------
Q psy9598 572 EVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL--CSSFSPGGLFLATG------------- 636 (1915)
Q Consensus 572 ~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~l~fspdg~~Lasg------------- 636 (1915)
+..|++++.++.|.+||+.++......... ...+. ...+++++.+++..
T Consensus 92 ----g~~l~~~~~~~~l~~~d~~~g~~~~~~~~~------------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 92 ----DDALFYVKDGRNLMRVDLATLEENVVYQVP------------AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp ----SSEEEEEETTTEEEEEETTTCCEEEEEECC------------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred ----CCEEEEEeCCCeEEEEECCCCcceeeeech------------hhcccccceeECCCCCeeccccccCccccccccc
Confidence 589999999999999999987543222211 12232 23458999888743
Q ss_pred ---------eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEeCCC------cEEEEEccCCceEEe
Q psy9598 637 ---------SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDG------TALIWYYKCSQWRFI 700 (1915)
Q Consensus 637 ---------s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~DG------~I~IWDl~~~~~~~~ 700 (1915)
+.++.|.+||+.+. ....+..+...+..++|+| +|..|+.++.++ .|.+||+..+....+
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g----~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTG----ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV 231 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTC----CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred chhhhhhccCCcceEEEEECCCC----ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence 24467899998532 2334456677899999999 999888777543 677777665542221
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC----eEEEEECCCCceE--EEeeCCCCC---eEEEE
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF----QIKIWDAFNGDLV--QVLKGHTNE---VFVLE 771 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg----~I~vwD~~tg~~i--~~l~gH~~~---V~sl~ 771 (1915)
. .......+..++|+|+|+.|+..+..++ .|++||+.+++.. ..+.++... ...++
T Consensus 232 ~---------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 232 K---------------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp C---------------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred e---------------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 0 0001135778899999998866554233 3999999998743 333331110 11236
Q ss_pred EccCCCCEEEEE---------ecCceEEEEECCCCccccceeeeeeec------CCCCcceEEEEEcCCCCEEEEEe-CC
Q psy9598 772 SHPFDSRVLLSA---------GHDGLIIIWDILSSKQRGYKWFHNIVE------GQGEGALFDGKWSPDGTTCALTD-SY 835 (1915)
Q Consensus 772 ~sp~dg~~LaSg---------s~DG~I~IWdl~s~~~~~~~~~~~~~~------~~~~~~V~~vafSpdg~~Lasg~-~d 835 (1915)
|+| ++..|+.. +.++.|++||+.++.. . .+..... ......+.+++|+|||+.|++++ .+
T Consensus 297 ~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~ 372 (388)
T 3pe7_A 297 MVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--H-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH 372 (388)
T ss_dssp EEE-EECCC------------CCCCEEEEEETTTTEE--E-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred Ecc-CCCcceeEeeeccccccCCCCEEEEEeccCCce--E-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCC
Confidence 899 77766643 4567999999988765 2 2220000 00011477889999999888765 45
Q ss_pred CeEEEEeC
Q psy9598 836 GHLLVYGL 843 (1915)
Q Consensus 836 G~I~Iwdl 843 (1915)
|...||.+
T Consensus 373 g~~~l~~~ 380 (388)
T 3pe7_A 373 GKPALYLA 380 (388)
T ss_dssp SSCEEEEE
T ss_pred CceeEEEE
Confidence 66556544
No 234
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=8.9e-17 Score=200.03 Aligned_cols=294 Identities=11% Similarity=-0.017 Sum_probs=202.4
Q ss_pred eeEEecCCCCcEEE-----EEEcCCCCEEEEEEC-CC--cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC
Q psy9598 468 QHYVNLGHLSAVFC-----VLFDKLGEVIVTGAD-DL--LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD 539 (1915)
Q Consensus 468 ~~~~l~gH~~~V~~-----vafspdg~~LaTGs~-Dg--~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D 539 (1915)
....|..|...+.. ++|+|||++|+.++. +| .|.+||+.++.......+|...+.+++|+|||+.|+.++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34567778777777 899999999999987 66 48889999998888777777777678999999999999999
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEe--ccCccCCCcEEEEE----------------------eCCCeEEEEeccc
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNF--CPLEVNGFNYLAST----------------------STDGCIGFWKYKL 595 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~f--sp~~~~d~~~L~sg----------------------s~DgtI~iWDl~~ 595 (1915)
+.|++||+.+++....+..+...+....| +| ++.+|+.. ..++.|.+||+.+
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANS----DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECT----TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred CeEEEEECCCCcceeeeechhhcccccceeECC----CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 99999999999988777777766655554 55 44666532 2447899999987
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCC------CeEEEEEecCCCCCceeEEeccCC--CCe
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGD------HHVRVYKMDGVDSPLGILEVEEHS--DKV 666 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~D------g~I~IwDl~~~~~~~~i~~l~~h~--~~V 666 (1915)
+...... .+...+..++|+| +|..|+.+... ..|.++++.+. ....+..+. ..+
T Consensus 178 g~~~~l~-------------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 178 GESTVIL-------------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT----NMRKVKTHAEGESC 240 (388)
T ss_dssp CCEEEEE-------------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC----CCEESCCCCTTEEE
T ss_pred CceEEee-------------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC----ceEEeeeCCCCccc
Confidence 7432111 1235678999999 99988877653 26777776332 123333344 357
Q ss_pred eEEEEcCCCCEEEEEeC-CC----cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEE-
Q psy9598 667 DSIQWSHSHLRFVSGSR-DG----TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI- 740 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~-DG----~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s- 740 (1915)
..++|+|+|+.|+..+. ++ .|.+||+.+++...+.... .... .......++|+|+|+.|++..
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-----~~~~------~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP-----ACSH------LMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC-----CEEE------EEECTTSSEEEEEECCC-----
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC-----Ccee------eeecCCCCeEccCCCcceeEee
Confidence 88899999997765443 22 3999999988754322100 0000 000011136899999888653
Q ss_pred -------ecCCeEEEEECCCCceEEEeeCCCC-----------CeEEEEEccCCCCEEEEEe-cCceEEEEECC
Q psy9598 741 -------NFNFQIKIWDAFNGDLVQVLKGHTN-----------EVFVLESHPFDSRVLLSAG-HDGLIIIWDIL 795 (1915)
Q Consensus 741 -------~~Dg~I~vwD~~tg~~i~~l~gH~~-----------~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl~ 795 (1915)
..+..|++||+.+++. ..+..|.. .+.+++|+| +++.|+.++ .+|...||.+.
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp -------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred eccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCC-CCCEEEEEecCCCceeEEEEE
Confidence 2267899999988765 44555655 578899999 888777655 47777777553
No 235
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.72 E-value=4e-15 Score=184.32 Aligned_cols=289 Identities=9% Similarity=-0.005 Sum_probs=189.2
Q ss_pred EEEEEECC--CcEEEEEC--CCCcEEE--EEe-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCceEEEeecC-C
Q psy9598 490 VIVTGADD--LLIKLWRA--RDGKLLA--TLR-GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-TLAPISVLVGH-Q 560 (1915)
Q Consensus 490 ~LaTGs~D--g~I~IWd~--~tg~~~~--~l~-gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~-tg~~~~~l~~h-~ 560 (1915)
+|++|+.. +.|.+|++ .+|.+.. ... ++...+..++|+|+|++|++++.+ .|.+|++. ++......... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45666653 46777654 5665432 221 344568899999999999999887 99999997 77765433211 1
Q ss_pred CCeEEEEeccCccCCCc--EEEEEe-------------CCCeEEEEeccc-CccccceeccCccccccccCCCCCceEEE
Q psy9598 561 GIITGVNFCPLEVNGFN--YLASTS-------------TDGCIGFWKYKL-DIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~--~L~sgs-------------~DgtI~iWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
+.+.+++|+|+ ++ ++++++ .+|++.+|++.. +......... ...+...+.++
T Consensus 83 g~~~~~~~spd----g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~--------~~~~~~~~~~~ 150 (365)
T 1jof_A 83 GHPRANDADTN----TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY--------EYQENTGIHGM 150 (365)
T ss_dssp SSGGGGCTTSC----CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE--------ECCTTCCEEEE
T ss_pred CCCccEEECCC----CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE--------EeCCCCcceEE
Confidence 34667889984 46 345553 689999999974 3321111100 01133568999
Q ss_pred EECCCCcEEEEEeC-CCeEEEEEecCCCCCceeEEec--cCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEEcc--CCceE
Q psy9598 625 SFSPGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVE--EHSDKVDSIQWSHSHLRFVSGSR-DGTALIWYYK--CSQWR 698 (1915)
Q Consensus 625 ~fspdg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~--~h~~~V~sl~fspdg~~L~sgs~-DG~I~IWDl~--~~~~~ 698 (1915)
+|+|+|++|+++.. ++.|.+|++........+..+. .|...+..++|+|+|++|++++. ++.|.+|++. ++...
T Consensus 151 ~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence 99999998887654 6899999995212222222333 24567999999999999887774 7899999875 44432
Q ss_pred EeeecccccCCCCccccccccccc------cEEEEE-ECCCCCEEEEEEecCC-----eEEEEECC-CCceEE---EeeC
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKI------KVTMVA-WDASDRWVITAINFNF-----QIKIWDAF-NGDLVQ---VLKG 762 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~------~V~~va-~spdg~~L~t~s~~Dg-----~I~vwD~~-tg~~i~---~l~g 762 (1915)
...... ...+. ...++.. .+..++ |+|+|++|+++...++ .|.+|++. ++++.. .+..
T Consensus 231 ~~~~~~-~~~~~-----~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~ 304 (365)
T 1jof_A 231 YTHHSF-PLIPP-----GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp EEEEEE-ESSCT-----TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred EccceE-EcCCC-----CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec
Confidence 100000 00000 0011121 578899 9999999988765333 89999986 676554 2334
Q ss_pred CCCCeEEEEEccC--CCCEEEEEec-CceEEEEECCCC
Q psy9598 763 HTNEVFVLESHPF--DSRVLLSAGH-DGLIIIWDILSS 797 (1915)
Q Consensus 763 H~~~V~sl~~sp~--dg~~LaSgs~-DG~I~IWdl~s~ 797 (1915)
+...+..++|+|. ++++|++++. ++.|.||++...
T Consensus 305 ~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 5556678899995 5888888876 489999999765
No 236
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=167.56 Aligned_cols=104 Identities=16% Similarity=0.253 Sum_probs=96.9
Q ss_pred chhhHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHH
Q psy9598 1530 PFNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHN 1603 (1915)
Q Consensus 1530 ~~~~~~~~~~ll~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~N 1603 (1915)
+..++..+..|+..|+++.+ |.+|+.+|+++ |+||. ++||+|.+|++||..|.|.++++|..||.|||+|
T Consensus 5 ~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~N 80 (147)
T 3iu6_A 5 TLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLER 80 (147)
T ss_dssp CCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 35677889999999999877 78999999988 89998 9999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9598 1604 SRNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVRWN 1638 (1915)
Q Consensus 1604 a~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~~~ 1638 (1915)
|++||.++ |+||.+|..|+++|.+.++++...-+
T Consensus 81 Ar~yN~e~-S~IyeDAv~Lq~~f~~~r~eL~~~g~ 114 (147)
T 3iu6_A 81 ARRMNRTD-SEIYEDAVELQQFFIKIRDELCKNGE 114 (147)
T ss_dssp HHHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999998 99999999999999999999987643
No 237
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.70 E-value=6.3e-16 Score=196.17 Aligned_cols=274 Identities=10% Similarity=0.059 Sum_probs=181.3
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc-Ccc--ccccccCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH-EPV--MFNERIRP 616 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~-~~~--~~~~~~~~ 616 (1915)
+.|++|+.... .+...++.+++++. +.+|++++.+| |++|+............. ... ........
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~----~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNK----YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP 90 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETT----TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEEC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecC----CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccccc
Confidence 56888865311 13446788999984 47899999888 888876432110000000 000 00001123
Q ss_pred CCCceEEEEECCCCcEEE----EEeCCCeEEEEEecCC--------CCCceeEEeccCCCCeeEEEEcCC-CCEEEEEeC
Q psy9598 617 GNAHILCSSFSPGGLFLA----TGSGDHHVRVYKMDGV--------DSPLGILEVEEHSDKVDSIQWSHS-HLRFVSGSR 683 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~La----sgs~Dg~I~IwDl~~~--------~~~~~i~~l~~h~~~V~sl~fspd-g~~L~sgs~ 683 (1915)
+...|.+++|+|+|.+|+ +|+.|+.|+|||+... .....+..+.+|...|.+|+|+|+ +.+|++|+.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 456799999999999999 7888999999998542 111124556789999999999998 789999999
Q ss_pred CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC
Q psy9598 684 DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH 763 (1915)
Q Consensus 684 DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH 763 (1915)
||+|+|||++++..... ...|...|.+++|+|+|.+|++++. ||.|++||+. +.....+..|
T Consensus 171 Dg~v~iwD~~~~~~~~~----------------~~~~~~~v~~v~wspdg~~lasgs~-dg~v~iwd~~-~~~~~~~~~~ 232 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCA----------------TLPSTVAVTSVCWSPKGKQLAVGKQ-NGTVVQYLPT-LQEKKVIPCP 232 (434)
T ss_dssp TSCEEEEEESSSEEEEE----------------EECGGGCEEEEEECTTSSCEEEEET-TSCEEEECTT-CCEEEEECCC
T ss_pred CCeEEEEEcCCCcceee----------------ccCCCCceeEEEEcCCCCEEEEEcC-CCcEEEEccC-CcccccccCC
Confidence 99999999988753221 1235678999999999999999998 9999999998 6666666554
Q ss_pred C-------CCeEEEEEccCCCCEEEE-EecCce------EEEEECCCCccccceeeeeeecC-----CCCcceEEEEEcC
Q psy9598 764 T-------NEVFVLESHPFDSRVLLS-AGHDGL------IIIWDILSSKQRGYKWFHNIVEG-----QGEGALFDGKWSP 824 (1915)
Q Consensus 764 ~-------~~V~sl~~sp~dg~~LaS-gs~DG~------I~IWdl~s~~~~~~~~~~~~~~~-----~~~~~V~~vafSp 824 (1915)
. ..|.+++|++ ++.++++ ++.||. +++|++..........+..+... ....+.+.+.+-+
T Consensus 233 ~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~ 311 (434)
T 2oit_A 233 PFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIE 311 (434)
T ss_dssp TTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEG
T ss_pred cccCCCCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhc
Confidence 3 3799999999 6666644 344543 89999986532111222222111 1222333344446
Q ss_pred CCCEEEEEe-CCCeEEEEeCC
Q psy9598 825 DGTTCALTD-SYGHLLVYGLG 844 (1915)
Q Consensus 825 dg~~Lasg~-~dG~I~Iwdl~ 844 (1915)
+.+++++++ ..+.|.|+...
T Consensus 312 dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 312 EWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp GGTEEEEEETTCSBCEEEEEC
T ss_pred cCCEEEEecCCCCceeEEEec
Confidence 777666654 34456666643
No 238
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=4.8e-15 Score=183.46 Aligned_cols=304 Identities=11% Similarity=0.060 Sum_probs=208.7
Q ss_pred CCCEEEEEE------CCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe----------CCCcEEEEECCCC
Q psy9598 487 LGEVIVTGA------DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWNLQTL 550 (1915)
Q Consensus 487 dg~~LaTGs------~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs----------~DgtIrVWDl~tg 550 (1915)
+++++++.. .|+.|.+||..+++.+.++..+..+ .|+|+|||++|++++ .+++|.+||+.++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455555543 3679999999999999999877655 899999999999886 3678999999999
Q ss_pred ceEEEeecC------CCCeEEEEeccCccCCCcEEEEEeC--CCeEEEEecccCccccc-eeccCccccccccCCCCCce
Q psy9598 551 APISVLVGH------QGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISK-TVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 551 ~~~~~l~~h------~~~V~sl~fsp~~~~d~~~L~sgs~--DgtI~iWDl~~~~~~~~-~~~~~~~~~~~~~~~~~~~V 621 (1915)
+.+..+..+ ......++|+|+ +++|+++.. +++|.+||+.++..+.. +... ..
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spd----g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--------------~~ 153 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTD----GKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--------------GC 153 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTT----SSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--------------TE
T ss_pred cEEEEEEcCccccccCCCcceEEECCC----CCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--------------Cc
Confidence 998887642 345678999994 478887764 68999999998754333 2111 12
Q ss_pred EEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCcee----EEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q psy9598 622 LCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGI----LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 696 (1915)
Q Consensus 622 ~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i----~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~ 696 (1915)
..+.+.|++ ..+++.+.||.+.+|++......... ..+..+..++ .+.+++++..++..+.+|.|.+||+....
T Consensus 154 ~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 154 WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 235567765 57788889999999988432221100 0112222222 23346777788888889999999987654
Q ss_pred eEEeee-cccccCCCCccccccccccccEEEEEECCCCCEEEEEEe----------cCCeEEEEECCCCceEEEeeCCCC
Q psy9598 697 WRFIRL-DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN----------FNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 697 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~----------~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
...... .... .. .............++|++++..++++.. ..+.|.+||+.+++.+..+..+.
T Consensus 233 ~~~~~~~~~~~---~~--~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 233 VKVDGPWSLLN---DE--DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp CEEEEEEESCC---HH--HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred ceecccccccC---cc--ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 222110 0000 00 0000000011123689999998887754 13489999999999999999887
Q ss_pred CeEEEEEccCCCCEEEEEecCceEEEEECCCC--ccccceeeeeeecCCCCcceEEEEEcCCCC
Q psy9598 766 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSS--KQRGYKWFHNIVEGQGEGALFDGKWSPDGT 827 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~--~~~~~~~~~~~~~~~~~~~V~~vafSpdg~ 827 (1915)
+.+|+|+| ++++|++++. ++|.|||+.++ +. +..+. ........++|+|+|.
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~--~~~i~-----~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKL--LRTIE-----GAAEASLQVQFHPVGG 360 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEE--EEEET-----TSCSSEEEEEECCCSC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCccee--eEEec-----cCCCCcEEEEecCCCC
Confidence 99999999 9999998887 99999999998 55 44432 1234567899999985
No 239
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.69 E-value=8.8e-16 Score=191.14 Aligned_cols=305 Identities=10% Similarity=0.041 Sum_probs=200.6
Q ss_pred EEEEEEcCCCCEEEEEECC---CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 479 VFCVLFDKLGEVIVTGADD---LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~D---g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
+.+++|+|+|++|+.++.. ..|.+|++.+++......++...+.++.|+|||++|+.++.++.|.+||+.++.....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 6788999999998877653 3788999988876554444433334488999999999999999999999999887666
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 635 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las 635 (1915)
+..+.. |++. +..|+..+.++...+|.. .+.|+|++..++.
T Consensus 118 ~~~~~~------~~~~----g~~l~~~~~~~~~~~~~~-----------------------------~~~~spdg~~~~~ 158 (396)
T 3c5m_A 118 YTVDEE------WKGY----GTWVANSDCTKLVGIEIL-----------------------------KRDWQPLTSWEKF 158 (396)
T ss_dssp EECCTT------EEEE----EEEEECTTSSEEEEEEEE-----------------------------GGGCCCCCSHHHH
T ss_pred Eecccc------cCCC----CCEEEeccCCcccccccc-----------------------------ccccCCCCcceee
Confidence 654544 5553 366776666665555531 1236677777665
Q ss_pred E-----eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEeCC------CcEEEEEccCCceEEeeec
Q psy9598 636 G-----SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRD------GTALIWYYKCSQWRFIRLD 703 (1915)
Q Consensus 636 g-----s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~D------G~I~IWDl~~~~~~~~~~~ 703 (1915)
+ ..+..|.+||+.+.. ...+..+...+..+.|+| ++..|+.++.+ ..|.+||+..+....+.
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~----~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-- 232 (396)
T 3c5m_A 159 AEFYHTNPTCRLIKVDIETGE----LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK-- 232 (396)
T ss_dssp HHHHHTCCCEEEEEEETTTCC----EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS--
T ss_pred eeeccCCCcceEEEEECCCCc----EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee--
Confidence 4 356789999984322 222335677899999999 78877766544 35777877655422110
Q ss_pred ccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC----CeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCE
Q psy9598 704 MNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN----FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 779 (1915)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D----g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~ 779 (1915)
.......+..++|+|+|++|+.++..+ +.|++||+.+++........ . +. +.|+|.++.+
T Consensus 233 -------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~ 296 (396)
T 3c5m_A 233 -------------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSL 296 (396)
T ss_dssp -------------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSE
T ss_pred -------------ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCce
Confidence 000123578899999999888776522 45999999988765433222 2 33 7888756677
Q ss_pred EEEEe----------------cCceEEEEECCCCccccceeeeeeecC------CCCcceEEEEEcCCCCEEEEEeC-CC
Q psy9598 780 LLSAG----------------HDGLIIIWDILSSKQRGYKWFHNIVEG------QGEGALFDGKWSPDGTTCALTDS-YG 836 (1915)
Q Consensus 780 LaSgs----------------~DG~I~IWdl~s~~~~~~~~~~~~~~~------~~~~~V~~vafSpdg~~Lasg~~-dG 836 (1915)
|++++ .++.|++||+.++.. .. +...... .....+..++|+|||+.|++++. +|
T Consensus 297 l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~ 373 (396)
T 3c5m_A 297 MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG 373 (396)
T ss_dssp EEEEECCC----------CCCCCCEEEEEETTTTBC--CE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS
T ss_pred EEEecCCcceeeccccccccCCCCcEEEEecccCce--EE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC
Confidence 77654 347899999988765 22 2100000 00002566899999999887764 45
Q ss_pred e--EEEEeCCCCc
Q psy9598 837 H--LLVYGLGGFK 847 (1915)
Q Consensus 837 ~--I~Iwdl~s~~ 847 (1915)
. |+++++.++.
T Consensus 374 ~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 374 VPAIYIADVPESY 386 (396)
T ss_dssp SCEEEEEECCTTC
T ss_pred CceEEEEEEcccc
Confidence 4 4445555543
No 240
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.66 E-value=4.3e-15 Score=201.96 Aligned_cols=305 Identities=10% Similarity=0.041 Sum_probs=198.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCC-----eEEEEeccCccCCCcEEEEEeCC--------
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI-----ITGVNFCPLEVNGFNYLASTSTD-------- 585 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~-----V~sl~fsp~~~~d~~~L~sgs~D-------- 585 (1915)
....+++|+|||.+|+++ |++|++||+.++.+...+.+|... ..+++|+| ++++|++++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp----dg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP----DGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT----TSSEEEEEEEEEECSSSCE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC----CCCEEEEEECCeeeEEEcc
Confidence 346689999999999886 999999999999998888887643 23478899 45888888876
Q ss_pred -CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCC
Q psy9598 586 -GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD 664 (1915)
Q Consensus 586 -gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~ 664 (1915)
+.+.+||+.++.... +..+...+...+|||||+.||.+ .++.|++|++.+.. .. ..+..++..
T Consensus 91 ~~~~~~~d~~~~~~~~-------------l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~-~~-~lt~~g~~~ 154 (740)
T 4a5s_A 91 TASYDIYDLNKRQLIT-------------EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP-SY-RITWTGKED 154 (740)
T ss_dssp EEEEEEEETTTTEECC-------------SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC-CE-ECCSCCBTT
T ss_pred ceEEEEEECCCCcEEE-------------cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc-eE-EEcCCCCcc
Confidence 566799999875321 12334678999999999999988 46899999985432 11 112223332
Q ss_pred Ce-----------------eEEEEcCCCCEEEEEeCCCc-EEEEE-----------------------------------
Q psy9598 665 KV-----------------DSIQWSHSHLRFVSGSRDGT-ALIWY----------------------------------- 691 (1915)
Q Consensus 665 ~V-----------------~sl~fspdg~~L~sgs~DG~-I~IWD----------------------------------- 691 (1915)
.+ .++.|||||+.|+.++.|.+ +.+|+
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d 234 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVN 234 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEE
Confidence 22 35899999999998875443 55554
Q ss_pred ccC---C---ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec---CCeEEEEECCCCc----eE-
Q psy9598 692 YKC---S---QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---NFQIKIWDAFNGD----LV- 757 (1915)
Q Consensus 692 l~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---Dg~I~vwD~~tg~----~i- 757 (1915)
+.+ + ....+. ......++...+..++|+|||+.++..... +..|++||+.+++ +.
T Consensus 235 ~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~ 303 (740)
T 4a5s_A 235 TDSLSSVTNATSIQIT-----------APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV 303 (740)
T ss_dssp TTSCCSSSCCCEEEEC-----------CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred CCCCCCCCcceEEEec-----------CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE
Confidence 333 2 111000 000001256678999999999977766542 2379999999887 22
Q ss_pred -EEe--eCCCCCeE-----EEEEccCCCCEEE-EEec-C--ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 758 -QVL--KGHTNEVF-----VLESHPFDSRVLL-SAGH-D--GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 758 -~~l--~gH~~~V~-----sl~~sp~dg~~La-Sgs~-D--G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
..+ .+|.+.|. .+.|+| ||+.|+ ..+. + ..|++||+.++.. . .+. .+...|..+. ++|
T Consensus 304 ~~~l~~~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~~~~~~~~~--~-~lT-----~g~~~v~~~~-~~d 373 (740)
T 4a5s_A 304 ARQHIEMSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICYFQIDKKDC--T-FIT-----KGTWEVIGIE-ALT 373 (740)
T ss_dssp GGCEEEECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEEEETTCSSC--E-ESC-----CSSSCEEEEE-EEC
T ss_pred EEEeeeccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEEEECCCCce--E-ecc-----cCCEEEEEEE-EEe
Confidence 222 45766554 788999 888776 6653 3 4688899987665 2 111 2234455443 244
Q ss_pred CCEEEEEeCC-------CeEEEEeCCCCcccccCC----------CceeecCCCCeee
Q psy9598 826 GTTCALTDSY-------GHLLVYGLGGFKRPQNIP----------RELFFHTDYRTLN 866 (1915)
Q Consensus 826 g~~Lasg~~d-------G~I~Iwdl~s~~~~~~l~----------~~~~F~~d~~~Lv 866 (1915)
+..|+..+.. .+|+..++.++.....+. ....|++|++.++
T Consensus 374 ~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~ 431 (740)
T 4a5s_A 374 SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ 431 (740)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEE
Confidence 7766665543 256666666543221111 2567888888665
No 241
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=159.91 Aligned_cols=101 Identities=17% Similarity=0.271 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q psy9598 116 FNWKNECREVLETLWVCPD------SEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNS 189 (1915)
Q Consensus 116 ~~~~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~ 189 (1915)
..++..+..|+..|+++.+ +.+|++.+++. |+||+ ++||+|.+|++||+.+.|.++++|..||.|||.||
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NA 81 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERA 81 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4677889999999999876 69999999977 89998 99999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy9598 190 RNYNQNKRSKIYIMTTRLSEFAEEHLRRLTVR 221 (1915)
Q Consensus 190 ~~yN~~~~s~i~~~a~~l~~~f~~~~~~~~~~ 221 (1915)
++||.++ |.||.+|..|+++|.+.+.++-..
T Consensus 82 r~yN~e~-S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 82 RRMNRTD-SEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHSCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999987 999999999999999999998776
No 242
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=6.1e-15 Score=197.66 Aligned_cols=299 Identities=10% Similarity=-0.060 Sum_probs=199.9
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEE--ECCCcEEEEECCCCcEEEEEeCCCCCEE---------EEEEe--CCCCE-EEEE
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTG--ADDLLIKLWRARDGKLLATLRGCSGEIS---------DIAID--NRNIL-LAAG 536 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTG--s~Dg~I~IWd~~tg~~~~~l~gH~~~I~---------~Lafs--pdg~~-LaSg 536 (1915)
.+.+|...|.+++|++++-+++++ +.++...||....+.....+.+|...|. ...|+ |||+. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456899999999999887666766 5578999999665666677777777766 66676 99998 7765
Q ss_pred eC-CCcEEEEECC--C-CceEEEeec-----CCCCeEEEEeccCccCCCcEEEEEeCC----------CeEEEEeccc--
Q psy9598 537 TV-DKTIRIWNLQ--T-LAPISVLVG-----HQGIITGVNFCPLEVNGFNYLASTSTD----------GCIGFWKYKL-- 595 (1915)
Q Consensus 537 s~-DgtIrVWDl~--t-g~~~~~l~~-----h~~~V~sl~fsp~~~~d~~~L~sgs~D----------gtI~iWDl~~-- 595 (1915)
+. +..|.+|++. + +. ...+.. |...+.+++|+|+ ++.|++++.+ ..|.+||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spD----g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPE----RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETT----TTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCC----CCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 53 5667777765 3 43 455555 6778899999994 5888888876 5899999887
Q ss_pred ----CccccceeccCccccccccC-CCCCceEEEEECCCCcEEEEEeCC--------CeEEEEEecCCCCC-ceeEEecc
Q psy9598 596 ----DIDISKTVFHEPVMFNERIR-PGNAHILCSSFSPGGLFLATGSGD--------HHVRVYKMDGVDSP-LGILEVEE 661 (1915)
Q Consensus 596 ----~~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~fspdg~~Lasgs~D--------g~I~IwDl~~~~~~-~~i~~l~~ 661 (1915)
+.. .. +. .+...+..++|||||++|+.++.+ ..|.+||+.+.... .......+
T Consensus 173 ~~~~~~~-~~------------l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 173 AADRSAV-RE------------LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp TTCGGGS-EE------------SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred cccCCce-eE------------EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 321 11 11 223567788999999999987755 37999999522211 22222345
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCC--cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEE
Q psy9598 662 HSDKVDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITA 739 (1915)
Q Consensus 662 h~~~V~sl~fspdg~~L~sgs~DG--~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~ 739 (1915)
|...+..++|+|+|.++++++.+| .|.+||+.++++..+...... .........+..++|++++.+++++
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~--------~~~p~w~~~~~~~~~~~~~~~~~~~ 311 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE--------FAGPLWTPGMRWFAPLANGLIAVVH 311 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB--------SSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc--------ccCccccccCceEeEeCCCEEEEEE
Confidence 678899999999999888888888 555566656654432210000 0000011124568999999987776
Q ss_pred EecCCeEEEE--ECCCCceEEEeeCCCCCeEEE-EEccCCCCEEEEEecCc--eEEEEECCCCcc
Q psy9598 740 INFNFQIKIW--DAFNGDLVQVLKGHTNEVFVL-ESHPFDSRVLLSAGHDG--LIIIWDILSSKQ 799 (1915)
Q Consensus 740 s~~Dg~I~vw--D~~tg~~i~~l~gH~~~V~sl-~~sp~dg~~LaSgs~DG--~I~IWdl~s~~~ 799 (1915)
.. +.++|| |+.++. +..+..|...+..+ ++++ +.-++++++.+. .|.+||+.+++.
T Consensus 312 ~~--~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 312 GK--GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp BS--SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred Ec--CccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCEEEEEECCCCce
Confidence 54 777787 665555 67788888878777 5543 323344445554 455566666654
No 243
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.65 E-value=2.9e-14 Score=176.63 Aligned_cols=282 Identities=10% Similarity=0.021 Sum_probs=182.7
Q ss_pred EEEEEeCC--CcEEEEEC--CCCceEEE--ee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc-cCcccccee
Q psy9598 532 LLAAGTVD--KTIRIWNL--QTLAPISV--LV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK-LDIDISKTV 603 (1915)
Q Consensus 532 ~LaSgs~D--gtIrVWDl--~tg~~~~~--l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~-~~~~~~~~~ 603 (1915)
+|+.|+.. +.|.+|++ .++..... .. ++...+..++|+|+ +++|++++.+ .|.+|++. ++.......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd----g~~l~~~~~~-~v~~~~~~~~g~~~~~~~ 78 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE----RKNIYGAAMK-KWSSFAVKSPTEIVHEAS 78 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT----SSEEEEEEBT-EEEEEEEEETTEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC----CCEEEEEccc-eEEEEEECCCCCEEEeeE
Confidence 35556543 46777665 55654322 11 23457889999994 4888888888 99999987 553211111
Q ss_pred ccCccccccccCCCCCceEEEEECCCCcE--EEEEe-------------CCCeEEEEEecCCCCCce-eEEec-cCCCCe
Q psy9598 604 FHEPVMFNERIRPGNAHILCSSFSPGGLF--LATGS-------------GDHHVRVYKMDGVDSPLG-ILEVE-EHSDKV 666 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l~fspdg~~--Lasgs-------------~Dg~I~IwDl~~~~~~~~-i~~l~-~h~~~V 666 (1915)
.. .+ +.+.+++|+|+|++ +++++ .+|.+.+|++........ +..+. .+...+
T Consensus 79 ~~----------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~ 147 (365)
T 1jof_A 79 HP----------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI 147 (365)
T ss_dssp EE----------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE
T ss_pred ee----------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcc
Confidence 00 00 12445889999994 45553 689999999953222111 11111 255679
Q ss_pred eEEEEcCCCCEEEEEe-CCCcEEEEEcc-CCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy9598 667 DSIQWSHSHLRFVSGS-RDGTALIWYYK-CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs-~DG~I~IWDl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg 744 (1915)
.+++|+|+|++|+++. .++.|.+|++. +++...... . ....+...+..++|+|+|++|++++..++
T Consensus 148 ~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~-~-----------~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 215 (365)
T 1jof_A 148 HGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS-V-----------DAPDPGDHPRWVAMHPTGNYLYALMEAGN 215 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-E-----------ECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred eEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee-E-----------ecCCCCCCCCEeEECCCCCEEEEEECCCC
Confidence 9999999999888766 46899999998 665432110 0 00012345788999999999998876578
Q ss_pred eEEEEECC--CCceEE---Eee-------CCCC------CeEEEE-EccCCCCEEEEEecC-c-----eEEEEECC-CCc
Q psy9598 745 QIKIWDAF--NGDLVQ---VLK-------GHTN------EVFVLE-SHPFDSRVLLSAGHD-G-----LIIIWDIL-SSK 798 (1915)
Q Consensus 745 ~I~vwD~~--tg~~i~---~l~-------gH~~------~V~sl~-~sp~dg~~LaSgs~D-G-----~I~IWdl~-s~~ 798 (1915)
.|.+|++. ++++.. .+. +|.. .+..++ |+| ++++|++++.+ + +|.+|++. ++.
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 99999765 566532 222 2232 588999 999 99888776543 2 89999996 454
Q ss_pred cccceeeeeeecCCCCcceEEEEEcC---CCCEEEEEeCC-CeEEEEeCCCC
Q psy9598 799 QRGYKWFHNIVEGQGEGALFDGKWSP---DGTTCALTDSY-GHLLVYGLGGF 846 (1915)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~V~~vafSp---dg~~Lasg~~d-G~I~Iwdl~s~ 846 (1915)
. .. +..... .+...+..++|+| ||++|++++.+ +.|.||++...
T Consensus 295 ~--~~-~~~~~~-~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 295 I--EK-QLFLSP-TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp E--EE-EEEEEE-CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred E--EE-eeeeee-cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 21 110111 1223456789999 89999999864 89999998765
No 244
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=3.7e-13 Score=175.31 Aligned_cols=346 Identities=11% Similarity=0.031 Sum_probs=235.9
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC--CCceEEEeecCCCC
Q psy9598 485 DKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGI 562 (1915)
Q Consensus 485 spdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~--tg~~~~~l~~h~~~ 562 (1915)
++.+.++++...++.|.+||..+++.+.++... ..+.++.|+|||++|++++.|+.|.+||+. +++.+..+.... .
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~ 241 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E 241 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C
Confidence 345567777788999999999999999988743 357799999999999999999999999996 888888876543 4
Q ss_pred eEEEEec----cCccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc-EEEEE
Q psy9598 563 ITGVNFC----PLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL-FLATG 636 (1915)
Q Consensus 563 V~sl~fs----p~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasg 636 (1915)
...++|+ |+ ++++++++ .+++|.+||..+...+..+...........+. ....+..+.+++++. ++++.
T Consensus 242 P~~ia~s~~~~pD----Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~-p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 242 ARSIETSKMEGWE----DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH-PEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp EEEEEECCSTTCT----TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE-SCCCEEEEEECSSSSEEEEEE
T ss_pred CceeEEccccCCC----CCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc-CCCceEEEEEcCCCCEEEEEe
Confidence 5799999 53 45655554 56999999988876655443321000000000 012577888888755 45555
Q ss_pred eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCcccc
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETS 715 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~ 715 (1915)
...|.|.++|..... ...+..+ .......++.|+|+|++|++++ .++.|.+||+.+++..... ...
T Consensus 317 ~~~g~v~~vd~~~~~-~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i-~vg---------- 383 (567)
T 1qks_A 317 KETGKILLVDYTDLN-NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE-DTG---------- 383 (567)
T ss_dssp TTTTEEEEEETTCSS-EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE-ECS----------
T ss_pred cCCCeEEEEecCCCc-cceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE-ecc----------
Confidence 667999999984322 1222222 2344577889999999887665 6789999999988754322 110
Q ss_pred ccccccc-cEEEEEECCCCCEEEEEE-ecCCeEEEEECCC-------CceEEEeeCCCCCeEEEEEccCCCCEEEEEec-
Q psy9598 716 DETNKKI-KVTMVAWDASDRWVITAI-NFNFQIKIWDAFN-------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH- 785 (1915)
Q Consensus 716 ~~~~~~~-~V~~va~spdg~~L~t~s-~~Dg~I~vwD~~t-------g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~- 785 (1915)
....|.+ .+. + ++|++..+++++ ..++.|.|+|..+ .+.+.++.+....-..|.+|| ++++|.+...
T Consensus 384 g~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p-~~~~l~v~~~~ 460 (567)
T 1qks_A 384 GQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP-NSQYLYVDATL 460 (567)
T ss_dssp SSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCSEEEEECTT
T ss_pred CcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC-CCCeEEEecCC
Confidence 0111221 222 2 578766555444 2368999999988 678888886654445677899 8888877652
Q ss_pred ------CceEEEEECCCC-----ccccceeeeee---ecCCCCcceEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCC
Q psy9598 786 ------DGLIIIWDILSS-----KQRGYKWFHNI---VEGQGEGALFDGKWSPDGTTCALTD-----SYGHLLVYGLGGF 846 (1915)
Q Consensus 786 ------DG~I~IWdl~s~-----~~~~~~~~~~~---~~~~~~~~V~~vafSpdg~~Lasg~-----~dG~I~Iwdl~s~ 846 (1915)
.++|.|+|+.+. .. ....+... -.+.+...+..+.|+++|..+.++. .++.|.|+|..++
T Consensus 461 ~~~~~~~~~v~v~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 461 NPEAEISGSVAVFDIKAMTGDGSDP-EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp CSSHHHHTCEEEEEGGGCCCSSSCC-CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCcccCceEEEEECCcccccccCC-CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 459999999876 21 01222100 0012335788999999999887774 3789999999999
Q ss_pred cccccCCC
Q psy9598 847 KRPQNIPR 854 (1915)
Q Consensus 847 ~~~~~l~~ 854 (1915)
+....++.
T Consensus 540 ~~~~~i~~ 547 (567)
T 1qks_A 540 ELKHVIKD 547 (567)
T ss_dssp EEEEEECC
T ss_pred eEEEEeCC
Confidence 88777765
No 245
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.59 E-value=2e-13 Score=168.83 Aligned_cols=289 Identities=9% Similarity=-0.038 Sum_probs=198.1
Q ss_pred CCCeEEEecccCCceeeeEEecCCCCcEEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCcEEEEEeCC----
Q psy9598 452 LSRSLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGAD----------DLLIKLWRARDGKLLATLRGC---- 517 (1915)
Q Consensus 452 ~d~~~~i~~~~~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs~----------Dg~I~IWd~~tg~~~~~l~gH---- 517 (1915)
.++.+.+++... .++..++..+..+ .++|+|+|++|++++. ++.|.+||+.+++.+.++..+
T Consensus 29 ~d~~v~v~D~~t--~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTN--GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTT--CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCC--CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 355677775433 3344566666555 8999999999999873 678999999999999887643
Q ss_pred --CCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceEEE-eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEe
Q psy9598 518 --SGEISDIAIDNRNILLAAGTV--DKTIRIWNLQTLAPISV-LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592 (1915)
Q Consensus 518 --~~~I~~Lafspdg~~LaSgs~--DgtIrVWDl~tg~~~~~-l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWD 592 (1915)
......|+|+|+|++|+++.. +++|.|||+.+++.+.. +.. . ....+.+.|.+ ...+++.+.||.+.+|+
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~---~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNR---PRSFMTICGDGGLLTIN 179 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTS---SSEEEEEETTSSEEEEE
T ss_pred ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCC---CeeEEEECCCCcEEEEE
Confidence 345678999999999998864 68999999999988877 542 2 22345667743 36788899999999999
Q ss_pred ccc-CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc------CC--
Q psy9598 593 YKL-DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE------HS-- 663 (1915)
Q Consensus 593 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~------h~-- 663 (1915)
+.. +....... . ...+..+... ..+.+++++..++..+.++.|.++|+.... ...+..+.- +.
T Consensus 180 ~~~~g~~~~~~~--~----~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~-~~~~~~~~~~~~~~~~~~~ 251 (361)
T 2oiz_A 180 LGEDGKVASQSR--S----KQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDE-VKVDGPWSLLNDEDKAKNW 251 (361)
T ss_dssp ECTTSSEEEEEE--C----CCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSS-CEEEEEEESCCHHHHHTTC
T ss_pred ECCCCcEeeecc--c----cceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCC-ceecccccccCcccccccc
Confidence 865 32211100 0 0011111111 123345677777777888999999984321 111111110 01
Q ss_pred --CCeeEEEEcCCCCEEEEEeC-----------CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC
Q psy9598 664 --DKVDSIQWSHSHLRFVSGSR-----------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 730 (1915)
Q Consensus 664 --~~V~sl~fspdg~~L~sgs~-----------DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s 730 (1915)
.....++|++++.+++++.. .+.|.+||+.+++.+.... .+. +.+++|+
T Consensus 252 ~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~----------------~~~--p~~ia~s 313 (361)
T 2oiz_A 252 VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP----------------GRD--ALSMTID 313 (361)
T ss_dssp EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE----------------CTT--CCEEEEE
T ss_pred ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe----------------cCC--eeEEEEC
Confidence 11223789999888777643 3589999999887544221 112 7889999
Q ss_pred CCCCEEEEEEecCCeEEEEECCCC--ceEEEeeCCCCCeEEEEEccCCCC
Q psy9598 731 ASDRWVITAINFNFQIKIWDAFNG--DLVQVLKGHTNEVFVLESHPFDSR 778 (1915)
Q Consensus 731 pdg~~L~t~s~~Dg~I~vwD~~tg--~~i~~l~gH~~~V~sl~~sp~dg~ 778 (1915)
|+|++|++++. +.|.|||..++ +.+..+..+......++++| +|.
T Consensus 314 pdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 314 QQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP-VGG 360 (361)
T ss_dssp TTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC-CSC
T ss_pred CCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEecC-CCC
Confidence 99999887763 99999999999 99999877777889999999 654
No 246
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.57 E-value=2.5e-14 Score=177.93 Aligned_cols=297 Identities=8% Similarity=-0.071 Sum_probs=198.9
Q ss_pred EEEECCCCcEEEEEeCCCCC-----EEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceEEEeecCCCCeEEEEeccCc
Q psy9598 501 KLWRARDGKLLATLRGCSGE-----ISDIAIDNRNILLAAGTVD---KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 572 (1915)
Q Consensus 501 ~IWd~~tg~~~~~l~gH~~~-----I~~Lafspdg~~LaSgs~D---gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~ 572 (1915)
..+|..++..+..+..+... +.+++|+|||++|+.++.. ..|.+||+.++.......++...+..+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-- 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-- 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT--
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC--
Confidence 45578888888888766544 7788999999998877543 4788999998876554443333333478998
Q ss_pred cCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC
Q psy9598 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 652 (1915)
Q Consensus 573 ~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~ 652 (1915)
+++.|+.++.++.|.+||+.++......... .. |+++|..|+..+.++...+|..
T Consensus 91 --dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~------------~~------~~~~g~~l~~~~~~~~~~~~~~----- 145 (396)
T 3c5m_A 91 --DERAFFYVKNELNLMKVDLETLEEQVIYTVD------------EE------WKGYGTWVANSDCTKLVGIEIL----- 145 (396)
T ss_dssp --TSSEEEEEETTTEEEEEETTTCCEEEEEECC------------TT------EEEEEEEEECTTSSEEEEEEEE-----
T ss_pred --CCCEEEEEEcCCcEEEEECCCCCcEEEEecc------------cc------cCCCCCEEEeccCCcccccccc-----
Confidence 4589999999999999999876432111111 11 5667777777666655555431
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEE-----eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEE
Q psy9598 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSG-----SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 727 (1915)
Q Consensus 653 ~~~i~~l~~h~~~V~sl~fspdg~~L~sg-----s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 727 (1915)
.+.|+|++..++.+ ..++.|.+||+.++....+. .+...+..+
T Consensus 146 ---------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-----------------~~~~~~~~~ 193 (396)
T 3c5m_A 146 ---------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-----------------QDTAWLGHP 193 (396)
T ss_dssp ---------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-----------------EESSCEEEE
T ss_pred ---------------ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-----------------cCCcccccc
Confidence 23477888876654 46678999999887644322 133457889
Q ss_pred EECC-CCCEEEEEEecC-----CeEEEEECCCCceEEEeeCC-CCCeEEEEEccCCCCEEEEEecC-----ceEEEEECC
Q psy9598 728 AWDA-SDRWVITAINFN-----FQIKIWDAFNGDLVQVLKGH-TNEVFVLESHPFDSRVLLSAGHD-----GLIIIWDIL 795 (1915)
Q Consensus 728 a~sp-dg~~L~t~s~~D-----g~I~vwD~~tg~~i~~l~gH-~~~V~sl~~sp~dg~~LaSgs~D-----G~I~IWdl~ 795 (1915)
.|+| ++..|+.++... ..|.+||+.++........+ ...+..++|+| +++.|+.++.+ +.|++||+.
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTT
T ss_pred eECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECC
Confidence 9999 788777665412 46999998766544433322 23578899999 88877766544 559999998
Q ss_pred CCccccceeeeeeecCCCCcceEEEEEcC-CCCEEEEEe----------------CCCeEEEEeCCCCccccc--C----
Q psy9598 796 SSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTD----------------SYGHLLVYGLGGFKRPQN--I---- 852 (1915)
Q Consensus 796 s~~~~~~~~~~~~~~~~~~~~V~~vafSp-dg~~Lasg~----------------~dG~I~Iwdl~s~~~~~~--l---- 852 (1915)
++.. ..... .. + .. ++|+| ||++|++++ .++.|++|++.++..... .
T Consensus 273 ~g~~--~~l~~----~~--~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 342 (396)
T 3c5m_A 273 TLEN--EEVMV----MP--P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSW 342 (396)
T ss_dssp TCCE--EEEEE----CC--S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCC
T ss_pred CCCe--EEeee----CC--C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcc
Confidence 8765 22111 11 1 22 89999 999888765 347899999987754211 1
Q ss_pred ----------CCceeecCCCCeeee
Q psy9598 853 ----------PRELFFHTDYRTLNR 867 (1915)
Q Consensus 853 ----------~~~~~F~~d~~~Lv~ 867 (1915)
...+.|++|++.++.
T Consensus 343 ~~~~~~~~~~~~~~~~s~dg~~l~~ 367 (396)
T 3c5m_A 343 DVLDGDRQITHPHPSFTPNDDGVLF 367 (396)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred ccccccccCCCCCceEccCCCeEEE
Confidence 223578888887763
No 247
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=5.3e-13 Score=162.46 Aligned_cols=277 Identities=10% Similarity=-0.035 Sum_probs=192.9
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
..|.+++|++++..++..+.++.+++| .+.....+.++...+.+++|+++|++++++..++.|.+||..++.....+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 457788899988888888888999999 56677778888888999999999998888888999999999988876655
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCC----CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTD----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~D----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
..+...+.+++|+++ +.+++++..+ +.|.+||..++....... . ......+.+++++|+|.+
T Consensus 83 ~~~~~~~~~i~~~~d----g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~-~---------~~~~~~~~~i~~d~~g~l 148 (333)
T 2dg1_A 83 VSHKANPAAIKIHKD----GRLFVCYLGDFKSTGGIFAATENGDNLQDIIE-D---------LSTAYCIDDMVFDSKGGF 148 (333)
T ss_dssp ECSSSSEEEEEECTT----SCEEEEECTTSSSCCEEEEECTTSCSCEEEEC-S---------SSSCCCEEEEEECTTSCE
T ss_pred eCCCCCcceEEECCC----CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc-c---------CccCCcccceEECCCCCE
Confidence 566788999999984 4777777666 689999987764321110 0 012356899999999987
Q ss_pred EEEEeC------CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEeCCCcEEEEEccC-CceEEeeecc
Q psy9598 633 LATGSG------DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALIWYYKC-SQWRFIRLDM 704 (1915)
Q Consensus 633 Lasgs~------Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~DG~I~IWDl~~-~~~~~~~~~~ 704 (1915)
+++... .+.|..|+..+ . .+..+..+...+.+++|+++|..|+ +.+.++.|.+|++.+ +........
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~-~---~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~- 223 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDF-R---TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA- 223 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTS-C---CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE-
T ss_pred EEEeccccccCCCceEEEEeCCC-C---EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc-
Confidence 776653 24444454421 1 1222223344678999999998654 555678999999864 221110000
Q ss_pred cccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCC------CeEEEEEccCCCC
Q psy9598 705 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN------EVFVLESHPFDSR 778 (1915)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~------~V~sl~~sp~dg~ 778 (1915)
. ....... ...+..++++++|.++++... ++.|.+||. +++.+..+..+.. .+.+++|+| ++.
T Consensus 224 ~-------~~~~~~~-~~~~~~i~~d~~G~l~v~~~~-~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~-dg~ 292 (333)
T 2dg1_A 224 T-------IPYYFTG-HEGPDSCCIDSDDNLYVAMYG-QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP-GTN 292 (333)
T ss_dssp E-------EEEECCS-SSEEEEEEEBTTCCEEEEEET-TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT-TSC
T ss_pred e-------EEEecCC-CCCCCceEECCCCCEEEEEcC-CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC-CCC
Confidence 0 0000011 135678999999987776665 789999998 5777777765543 689999998 776
Q ss_pred EEEEEecC
Q psy9598 779 VLLSAGHD 786 (1915)
Q Consensus 779 ~LaSgs~D 786 (1915)
.|+.++.+
T Consensus 293 ~L~v~~~~ 300 (333)
T 2dg1_A 293 QLIICSND 300 (333)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeCc
Confidence 66655554
No 248
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.55 E-value=1.2e-12 Score=155.55 Aligned_cols=244 Identities=11% Similarity=0.060 Sum_probs=177.5
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe------CCCCCEEEEEEe-CCCCEEEEEeC-CCcEEE
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR------GCSGEISDIAID-NRNILLAAGTV-DKTIRI 544 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~------gH~~~I~~Lafs-pdg~~LaSgs~-DgtIrV 544 (1915)
.+|...+.+|+++++|.++++.+.++.|.+||.. +..+..+. +|...+.+|+++ +++.+++++.. ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3667889999999999999988889999999986 77776664 344678999995 67777776643 889999
Q ss_pred EECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 545 WNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 545 WDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
|| .++..+..+. .+...+.+|++.+. +.++++.+.++.|.+||.... .+..+.. ..+...+.+
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~~~~g~-~~~~~~~----------~~~~~~p~~ 168 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNK----GRIIVVECKVMRVIIFDQNGN-VLHKFGC----------SKHLEFPNG 168 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTT----SCEEEEETTTTEEEEECTTSC-EEEEEEC----------TTTCSSEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCC----CCEEEEECCCCEEEEEcCCCC-EEEEeCC----------CCccCCcEE
Confidence 99 5677776664 34467899999984 478888788899999996432 2111110 022356889
Q ss_pred EEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc--CCCCeeEEEEcCCCCEEEEEeCCC-cEEEEEccCCceEEe
Q psy9598 624 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE--HSDKVDSIQWSHSHLRFVSGSRDG-TALIWYYKCSQWRFI 700 (1915)
Q Consensus 624 l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~--h~~~V~sl~fspdg~~L~sgs~DG-~I~IWDl~~~~~~~~ 700 (1915)
++++++|.++++...++.|.+|+..+ ..+..+.. +...+.+|+++++|.++++...++ .|.+|+... .....
T Consensus 169 i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~ 243 (286)
T 1q7f_A 169 VVVNDKQEIFISDNRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISA 243 (286)
T ss_dssp EEECSSSEEEEEEGGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEE
T ss_pred EEECCCCCEEEEECCCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEE
Confidence 99999999888888899999999732 23334433 346789999999999888888886 999999643 32221
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg 754 (1915)
... ......+.+++++++|.++++ +. ++.|++|++...
T Consensus 244 ~~~--------------~~~~~~~~~i~~~~~g~l~vs-~~-~~~v~v~~~~~~ 281 (286)
T 1q7f_A 244 LES--------------KVKHAQCFDVALMDDGSVVLA-SK-DYRLYIYRYVQL 281 (286)
T ss_dssp EEE--------------SSCCSCEEEEEEETTTEEEEE-ET-TTEEEEEECSCC
T ss_pred Ecc--------------cCCCCcceeEEECCCCcEEEE-CC-CCeEEEEEcccc
Confidence 100 011234678999999976555 55 899999998654
No 249
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.55 E-value=2e-12 Score=153.72 Aligned_cols=245 Identities=14% Similarity=0.134 Sum_probs=176.4
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee------cCCCCeEEEEeccCccCCCcEEEEEeC-CCeE
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV------GHQGIITGVNFCPLEVNGFNYLASTST-DGCI 588 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~------~h~~~V~sl~fsp~~~~d~~~L~sgs~-DgtI 588 (1915)
+|-..+.+|++++++.++++.+.++.|.+||.. +..+..+. +|...+.++++.+. ++.++++... ++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~---~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN---SGDIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT---TTEEEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC---CCeEEEEcCCCCCEE
Confidence 455678999999999999988889999999987 66666653 24467889999531 3456666543 8899
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec--cCCCCe
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE--EHSDKV 666 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~--~h~~~V 666 (1915)
.+||. ++..+..+.. .+...+.+++++++|.++++...++.|.+|+..+ ..+..+. .+...+
T Consensus 103 ~~~d~-~g~~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 103 QIYNQ-YGQFVRKFGA-----------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECT-TSCEEEEECT-----------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECTTTCSSE
T ss_pred EEECC-CCcEEEEecC-----------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC----CEEEEeCCCCccCCc
Confidence 99994 4432221111 1235678999999999888888889999999632 2233332 455678
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC-e
Q psy9598 667 DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF-Q 745 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg-~ 745 (1915)
.+|+++++|.++++.+.++.|.+||.... ...... ..+....+..++++++|.++++... ++ .
T Consensus 167 ~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~--------------~~g~~~~p~~i~~d~~G~l~v~~~~-~~~~ 230 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIG--------------GEGITNYPIGVGINSNGEILIADNH-NNFN 230 (286)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEES--------------CTTTSCSEEEEEECTTCCEEEEECS-SSCE
T ss_pred EEEEECCCCCEEEEECCCCEEEEEcCCCC-EEEEEc--------------cCCccCCCcEEEECCCCCEEEEeCC-CCEE
Confidence 99999999998888888999999997543 221110 0112245788999999987777665 65 9
Q ss_pred EEEEECCCCceEEEeeCCCC--CeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 746 IKIWDAFNGDLVQVLKGHTN--EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~--~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
|.+|+. +++.+..+..+.. .+.+++++| ++.++++ +.|++|+||++....+
T Consensus 231 i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 231 LTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCCC
T ss_pred EEEECC-CCCEEEEEcccCCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccccc
Confidence 999995 5777777765543 478999999 8887777 6799999999865443
No 250
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.54 E-value=9.2e-13 Score=160.31 Aligned_cols=276 Identities=10% Similarity=0.004 Sum_probs=190.1
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
..|.+|+|++++..+++.+.++.+++| .+.....+..+...+.+++|+++ +.+++++..++.|.+||..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----g~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQ----GQLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTT----SCEEEEETTTCEEEEECTTTCCE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCC----CCEEEEECCCCEEEEEeCCCCcE
Confidence 457888999998888887889999999 45677778888888899999984 47777888899999999887643
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd 674 (1915)
..... .+...+.+++++++|.+++++..+ +.|.+||..+.. ...+.....+...+.+++++++
T Consensus 79 ~~~~~------------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~ 145 (333)
T 2dg1_A 79 KRPFV------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSK 145 (333)
T ss_dssp EEEEE------------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTT
T ss_pred EEEee------------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCC
Confidence 21110 123578999999999888877666 689999974322 1111111234567899999999
Q ss_pred CCEEEEEeC------CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 675 HLRFVSGSR------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 675 g~~L~sgs~------DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
|.++++... .+.|..|+..++...... .....+..++|+++|.+|+++...++.|.+
T Consensus 146 g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------------~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 146 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-----------------QNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-----------------EEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred CCEEEEeccccccCCCceEEEEeCCCCEEEEee-----------------cCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 987777654 245555555544432211 012346789999999987776654789999
Q ss_pred EECCC-CceEEE--------eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeec-CCCCcceE
Q psy9598 749 WDAFN-GDLVQV--------LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVE-GQGEGALF 818 (1915)
Q Consensus 749 wD~~t-g~~i~~--------l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~-~~~~~~V~ 818 (1915)
|++.+ +..+.. +.++ ..+..+++++ ++.++++...++.|.+||.. +.. +..+..... ..+...+.
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~-g~~--~~~~~~~~~~~g~~~~~~ 283 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS-DDNLYVAMYGQGRVLVFNKR-GYP--IGQILIPGRDEGHMLRST 283 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT-TCCEEEEEETTTEEEEECTT-SCE--EEEEECTTGGGTCSCBCC
T ss_pred EEecCCCcCcccccceEEEecCCC-CCCCceEECC-CCCEEEEEcCCCEEEEECCC-CCE--EEEEEcCCCccccccCcc
Confidence 99864 443321 1223 4678899999 88888888888999999984 444 333321000 00112688
Q ss_pred EEEEcCCCCEEEEEeCCC
Q psy9598 819 DGKWSPDGTTCALTDSYG 836 (1915)
Q Consensus 819 ~vafSpdg~~Lasg~~dG 836 (1915)
+++|+|||..|++++.+|
T Consensus 284 ~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 284 HPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEECTTSCEEEEEEECG
T ss_pred eEEECCCCCEEEEEeCcc
Confidence 999999988887776654
No 251
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=2.1e-12 Score=157.85 Aligned_cols=258 Identities=9% Similarity=0.026 Sum_probs=177.1
Q ss_pred CcEEEEEEcCCCCEEEEEE---------CCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC---C--cE
Q psy9598 477 SAVFCVLFDKLGEVIVTGA---------DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD---K--TI 542 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs---------~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D---g--tI 542 (1915)
..|..++| ||++||... .++.|.+|++.++.... + ..+.+++|+|||++||.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45677777 888887642 25689999999887543 3 568899999999999887754 2 48
Q ss_pred EEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC---------------------------CeEEEEeccc
Q psy9598 543 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---------------------------GCIGFWKYKL 595 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D---------------------------gtI~iWDl~~ 595 (1915)
.+|++.++........+ . +.+++|+|+ +..|+.++.+ ..|.+||+.+
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspd----g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNED----SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTT----SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCC----CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 88899888766655444 3 999999994 4777777632 5788899877
Q ss_pred CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC-------eEEEEEecCCCCCceeEEeccCCCCeeE
Q psy9598 596 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH-------HVRVYKMDGVDSPLGILEVEEHSDKVDS 668 (1915)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg-------~I~IwDl~~~~~~~~i~~l~~h~~~V~s 668 (1915)
+..+..+. . . .+.+++|+|+| +++++..++ ...||.++ .. ....+..+ ..+.+
T Consensus 162 ~~~~~~l~------------~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~---~~~~l~~~-~~~~~ 221 (347)
T 2gop_A 162 EEVIEEFE------------K-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DG---KEEKMFEK-VSFYA 221 (347)
T ss_dssp TEEEEEEE------------E-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TT---EEEEEEEE-ESEEE
T ss_pred CeEEeeec------------C-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CC---ceEEeccC-cceee
Confidence 64311111 0 1 45688999999 777776542 45677664 22 22333334 45554
Q ss_pred EEEcCCCCEEEEEeCCC--------cEEEEEccCCceEEeeecccccCCCCccccccccccccEEE-EEECCCCCEEEEE
Q psy9598 669 IQWSHSHLRFVSGSRDG--------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM-VAWDASDRWVITA 739 (1915)
Q Consensus 669 l~fspdg~~L~sgs~DG--------~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-va~spdg~~L~t~ 739 (1915)
+ +|+|.+|+.++.++ .|.+|| +++...+ ...+...+.. ++|+ ++ +++++
T Consensus 222 ~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l----------------~~~~~~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 222 V--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI----------------LDEVDRGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp E--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES----------------STTCCSEEEEEEEET-TE-EEEEE
T ss_pred E--CCCCCEEEEEEccccCCccccceEEEEC--CCceEec----------------cccCCcccCCccEEc-Cc-EEEEE
Confidence 4 99999888877543 577776 4442211 1123455665 8999 88 77777
Q ss_pred EecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceE-EEEECC
Q psy9598 740 INFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLI-IIWDIL 795 (1915)
Q Consensus 740 s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I-~IWdl~ 795 (1915)
+. ++.++|| +.+++... +..+.+.|.+++|+| .++++++.++.. .||.+.
T Consensus 280 ~~-~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 280 FE-EGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-TTEEEEE-EESSSEEE-EECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred ec-CCcEEEE-EcCCceEE-EecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 76 9999999 87666544 445577899999998 678888877765 778776
No 252
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.53 E-value=1.5e-12 Score=158.68 Aligned_cols=254 Identities=9% Similarity=0.003 Sum_probs=179.3
Q ss_pred CCcEEEEEEcCCCCEEEEEECC------------------------CcEEEEECCCCcEEEEEe-CCCCCEEEEEEeCCC
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADD------------------------LLIKLWRARDGKLLATLR-GCSGEISDIAIDNRN 530 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~D------------------------g~I~IWd~~tg~~~~~l~-gH~~~I~~Lafspdg 530 (1915)
.+.|.+|+|+++|+++++++.+ +.|.+||..+++++..+. ++-.....|+++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4779999999999999988877 479999999999887765 455689999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCc-eEEEe---------ecCCCCeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCccc
Q psy9598 531 ILLAAGTVDKTIRIWNLQTLA-PISVL---------VGHQGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDI 599 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~tg~-~~~~l---------~~h~~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~ 599 (1915)
.++++.+.++.|++|+..... .+..+ .++.....+|+|+|. ++.++++.+ .++.|++|+.. +..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~---~g~lyv~d~~~~~~I~~~~~~-g~~~ 178 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS---TGAVFVSDGYCNSRIVQFSPS-GKFV 178 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT---TCCEEEEECSSCCEEEEECTT-SCEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC---CCeEEEEeCCCCCeEEEEcCC-CCEE
Confidence 999998889999999986542 45555 344557899999982 347777776 69999999943 3322
Q ss_pred cceeccCccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEe--ccCCCCeeEEEEcC---
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEV--EEHSDKVDSIQWSH--- 673 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l--~~h~~~V~sl~fsp--- 673 (1915)
..+...... ......+.....+++++|+ |.++++...++.|++|+..+ ...+..+ ..+...+.+++|+|
T Consensus 179 ~~~~~~g~~--~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~---G~~~~~~~~~~~~~~~~~~~~~pg~~ 253 (329)
T 3fvz_A 179 TQWGEESSG--SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT---KEFVREIKHASFGRNVFAISYIPGFL 253 (329)
T ss_dssp EEECEECCS--SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT---CCEEEEECCTTTTTCEEEEEEETTEE
T ss_pred EEeccCCCC--CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC---CcEEEEEeccccCCCcceeeecCCEE
Confidence 222111000 0000011234789999998 78888888899999999842 2333443 45667889999999
Q ss_pred ---CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 674 ---SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 674 ---dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
+|..+++.+.++.|++|++.+++....... ...+...+..|+++++| .|+++...++.|++|+
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~-------------~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP-------------VRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEETTTCCEEEEECC-------------SSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEE
T ss_pred EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC-------------CCCccCCeeEEEECCCC-CEEEEECCCCEEEEEe
Confidence 333333333455899999998876543210 12244567899999999 4555544489999999
Q ss_pred CC
Q psy9598 751 AF 752 (1915)
Q Consensus 751 ~~ 752 (1915)
+.
T Consensus 320 ~~ 321 (329)
T 3fvz_A 320 LT 321 (329)
T ss_dssp EE
T ss_pred CC
Confidence 74
No 253
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.53 E-value=4.5e-13 Score=179.47 Aligned_cols=295 Identities=9% Similarity=-0.031 Sum_probs=192.6
Q ss_pred EEeCCCCCEEEEEEeCCCCEEEEE--eCCCcEEEEECCCCceEEEeecCCCCeE---------EEEec--cCccCCCcE-
Q psy9598 513 TLRGCSGEISDIAIDNRNILLAAG--TVDKTIRIWNLQTLAPISVLVGHQGIIT---------GVNFC--PLEVNGFNY- 578 (1915)
Q Consensus 513 ~l~gH~~~I~~Lafspdg~~LaSg--s~DgtIrVWDl~tg~~~~~l~~h~~~V~---------sl~fs--p~~~~d~~~- 578 (1915)
.+.+|...|.+++|++++.+++++ +.++...||....+.....+..|...|. +..|+ |+ ++.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD----g~~~ 93 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPA----GGPL 93 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSS----SSCE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecC----CCeE
Confidence 356788999999999887777777 5588999999655556677777776666 56665 74 366
Q ss_pred EEEEeC-CCeEEEEecc--c-CccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC----------CeEEE
Q psy9598 579 LASTST-DGCIGFWKYK--L-DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----------HHVRV 644 (1915)
Q Consensus 579 L~sgs~-DgtI~iWDl~--~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D----------g~I~I 644 (1915)
|+.++. +..|.+|++. + +. ...+... ....+...+.+++|+|||+.|++++.+ ..|++
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~-------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAV-PRPLTPV-------SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCC-CEECSCC-------CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCC-CEeccCC-------ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 555543 5666666665 2 32 1111110 000134678899999999999998876 58999
Q ss_pred EEecCCC--CCceeEEec-cCCCCeeEEEEcCCCCEEEEEeCC--------CcEEEEEcc-CC---ceEEeeecccccCC
Q psy9598 645 YKMDGVD--SPLGILEVE-EHSDKVDSIQWSHSHLRFVSGSRD--------GTALIWYYK-CS---QWRFIRLDMNTCLP 709 (1915)
Q Consensus 645 wDl~~~~--~~~~i~~l~-~h~~~V~sl~fspdg~~L~sgs~D--------G~I~IWDl~-~~---~~~~~~~~~~~~~~ 709 (1915)
||+.+.. .......+. .+...+.+++|+|+|++|+.++.+ ..|.+||+. ++ ....+.
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-------- 237 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-------- 237 (662)
T ss_dssp EETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--------
T ss_pred EECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--------
Confidence 9985410 001233444 566788899999999999988755 379999998 45 222111
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEeeCCCCC--------eEEEEEccCCCCE
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNE--------VFVLESHPFDSRV 779 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~gH~~~--------V~sl~~sp~dg~~ 779 (1915)
..+...+..++|+|||++++++.. ++ .|++||+.+++....+.++... +..++|+| ++.+
T Consensus 238 --------~~~~~~~~~~~~spdg~l~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~ 307 (662)
T 3azo_A 238 --------GGPEEAIAQAEWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLI 307 (662)
T ss_dssp --------EETTBCEEEEEECTTSCEEEEECT-TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCE
T ss_pred --------CCCCceEcceEECCCCeEEEEECC-CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEE
Confidence 113456889999999996555544 77 7778887777766555544332 56788988 8899
Q ss_pred EEEEecCceEEEE--ECCCCccccceeeeeeecCCCCcceEEEEEcCCCCE--EEEEeCCC--eEEEEeCCCCc
Q psy9598 780 LLSAGHDGLIIIW--DILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTT--CALTDSYG--HLLVYGLGGFK 847 (1915)
Q Consensus 780 LaSgs~DG~I~IW--dl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~--Lasg~~dG--~I~Iwdl~s~~ 847 (1915)
+++++. |.++|| |+.++.. ..+. .+.+.+..+ |++++.. +++++.+. .|++|++.+++
T Consensus 308 ~~~~~~-~~~~l~~~d~~~~~~---~~l~-----~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 308 AVVHGK-GAAVLGILDPESGEL---VDAA-----GPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EEEEBS-SSCEEEEEETTTTEE---EECC-----SSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEc-CccEEEEEECCCCcE---EEec-----CCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 999998 999999 4444432 2222 234456655 2444543 44444443 46666766664
No 254
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=3e-11 Score=143.67 Aligned_cols=285 Identities=8% Similarity=-0.028 Sum_probs=199.4
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE-EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLAT-LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~-l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
.+..+...+.+|+++++|.++++...++.|.+||.. +..... +..+...+.+|+++++|.++++...++.|..|+..
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 455677899999999999988877668899999988 654432 23356789999999999988887778899999986
Q ss_pred CceE-EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 550 LAPI-SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 550 g~~~-~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
+... ..+..+...+.++++.+. +.++++...++.|.+||. ++... .... ......+.++++++
T Consensus 87 g~~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~d~-~g~~~-~~~~----------~~~~~~~~~i~~~~ 150 (299)
T 2z2n_A 87 GIIKEYTLPNPDSAPYGITEGPN----GDIWFTEMNGNRIGRITD-DGKIR-EYEL----------PNKGSYPSFITLGS 150 (299)
T ss_dssp SCEEEEECSSTTCCEEEEEECTT----SCEEEEETTTTEEEEECT-TCCEE-EEEC----------SSTTCCEEEEEECT
T ss_pred CcEEEEeCCCcCCCceeeEECCC----CCEEEEecCCceEEEECC-CCCEE-EecC----------CCCCCCCceEEEcC
Confidence 4332 222234567899999873 477777777889999998 44221 1111 11235688999999
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccC
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 708 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~ 708 (1915)
+|.++++...++.|.+||. .. . .....+..+...+.+|+++++|.++++...++.|.+||. ++.......
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-~g-~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~------ 220 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-SG-D-ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKI------ 220 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-TC-C-EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC------
T ss_pred CCCEEEEeCCCCEEEEEcC-CC-c-EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEEC------
Confidence 9988777777789999987 21 1 111223344567889999999997777777889999998 665332110
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE-eeCCCCCeEEEEEccCCCCEEEEEecCc
Q psy9598 709 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDG 787 (1915)
Q Consensus 709 ~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs~DG 787 (1915)
......+.+++++++|..+++... ++.|.+||. ++..... +..+...+.++++ + ++.++++.+ .+
T Consensus 221 ---------~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~-~~ 286 (299)
T 2z2n_A 221 ---------PTPNARPHAITAGAGIDLWFTEWG-ANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-D-GETIWFAME-CD 286 (299)
T ss_dssp ---------SSTTCCEEEEEECSTTCEEEEETT-TTEEEEEET-TTEEEEEECSSSSCCEEEEEE-C-SSCEEEEET-TT
T ss_pred ---------CCCCCCceeEEECCCCCEEEeccC-CceEEEECC-CCceEEEeCCCCCCccceEEe-c-CCCEEEEec-CC
Confidence 113356789999999985555434 789999998 5543322 3355567899999 7 888777665 56
Q ss_pred eEEEEECCCC
Q psy9598 788 LIIIWDILSS 797 (1915)
Q Consensus 788 ~I~IWdl~s~ 797 (1915)
.|..++..++
T Consensus 287 ~l~~~~~~~~ 296 (299)
T 2z2n_A 287 KIGKLTLIKD 296 (299)
T ss_dssp EEEEEEEC--
T ss_pred cEEEEEcCcc
Confidence 7777777654
No 255
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.52 E-value=2.2e-12 Score=157.33 Aligned_cols=252 Identities=11% Similarity=0.048 Sum_probs=183.0
Q ss_pred CCCEEEEEEeCCCCEEEEEeCC------------------------CcEEEEECCCCceEEEee-cCCCCeEEEEeccCc
Q psy9598 518 SGEISDIAIDNRNILLAAGTVD------------------------KTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLE 572 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~D------------------------gtIrVWDl~tg~~~~~l~-~h~~~V~sl~fsp~~ 572 (1915)
-+.|.+|+++++|+++++.+.+ ++|.+||..+++.+..+. ++...+.+|++++.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~- 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD- 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT-
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC-
Confidence 3579999999999999988877 479999999999877664 45567899999984
Q ss_pred cCCCcEEEEEeCCCeEEEEecccCc-cccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEe-CCCeEEEEEecC
Q psy9598 573 VNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGS-GDHHVRVYKMDG 649 (1915)
Q Consensus 573 ~~d~~~L~sgs~DgtI~iWDl~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs-~Dg~I~IwDl~~ 649 (1915)
+.++++.+.++.|++|+..... .+..+... .. ...-..+.....+++|+| +|.++++.+ .++.|++|+..+
T Consensus 102 ---g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~--~~-~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g 175 (329)
T 3fvz_A 102 ---GNYWVTDVALHQVFKLDPHSKEGPLLILGRS--MQ-PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG 175 (329)
T ss_dssp ---SCEEEEETTTTEEEEECTTCSSCCSEEESBT--TB-CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS
T ss_pred ---CCEEEEECCCCEEEEEeCCCCeEEEEEeccc--CC-CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC
Confidence 4788888889999999986542 11111100 00 000012335688999999 788888886 689999999532
Q ss_pred CCCCceeEEec----------cCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 650 VDSPLGILEVE----------EHSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 650 ~~~~~~i~~l~----------~h~~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
..+..+. ++-....+|+++++ +.++++...++.|++|+..+++.+.... ..
T Consensus 176 ----~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~--------------~~ 237 (329)
T 3fvz_A 176 ----KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK--------------HA 237 (329)
T ss_dssp ----CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC--------------CT
T ss_pred ----CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe--------------cc
Confidence 2233332 12244889999998 7778888889999999998777544221 11
Q ss_pred cccccEEEEEECCCCCEEEEEEe------cCCeEEEEECCCCceEEEee---CCCCCeEEEEEccCCCCEEEEEecCceE
Q psy9598 719 NKKIKVTMVAWDASDRWVITAIN------FNFQIKIWDAFNGDLVQVLK---GHTNEVFVLESHPFDSRVLLSAGHDGLI 789 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~------~Dg~I~vwD~~tg~~i~~l~---gH~~~V~sl~~sp~dg~~LaSgs~DG~I 789 (1915)
.+...+..++|+| +..+++.+. .+..|++|++.+++.+..+. ++...+.+|+++| ++.++++...++.|
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I 315 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEE
Confidence 2345677888988 333333221 14589999999999999884 6777899999999 88888988999999
Q ss_pred EEEECCC
Q psy9598 790 IIWDILS 796 (1915)
Q Consensus 790 ~IWdl~s 796 (1915)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999864
No 256
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.51 E-value=7.3e-12 Score=163.11 Aligned_cols=321 Identities=15% Similarity=0.093 Sum_probs=215.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc--cCccccceecc
Q psy9598 528 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK--LDIDISKTVFH 605 (1915)
Q Consensus 528 pdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~--~~~~~~~~~~~ 605 (1915)
+.+.++++...+++|.|||..+++.+..+... ..+.++.|+| ++++|++++.|+.|.+||+. +...+..+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~Sp----DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~- 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSA----SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI- 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECT----TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECC----CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-
Confidence 44556777788999999999999999888643 3567999999 45899999999999999995 5543322221
Q ss_pred CccccccccCCCCCceEEEEEC----CCCcEEEEEeC-CCeEEEEEecCCCCCceeEEec--c--------CCC-CeeEE
Q psy9598 606 EPVMFNERIRPGNAHILCSSFS----PGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVE--E--------HSD-KVDSI 669 (1915)
Q Consensus 606 ~~~~~~~~~~~~~~~V~~l~fs----pdg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~--~--------h~~-~V~sl 669 (1915)
+ .....++|+ |+|+++++++. ++.|.|||..+ ...+..+. + |.. .+..|
T Consensus 239 -----------G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t---~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 239 -----------G-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET---LEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp -----------C-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---CCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred -----------C-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC---CcEEEEEeccccccccccccCCCceEEE
Confidence 1 346789999 69988877665 58999999743 23333322 1 222 67888
Q ss_pred EEcCCCCEEE-EEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy9598 670 QWSHSHLRFV-SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 748 (1915)
Q Consensus 670 ~fspdg~~L~-sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~v 748 (1915)
.+++++..++ +...+|.|.++|+.......... .........+.|+++|++++++...++.|.+
T Consensus 304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~---------------i~~~~~~~d~~~~pdgr~~~va~~~sn~V~V 368 (567)
T 1qks_A 304 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE---------------ISAERFLHDGGLDGSHRYFITAANARNKLVV 368 (567)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE---------------EECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred EEcCCCCEEEEEecCCCeEEEEecCCCccceeee---------------eeccccccCceECCCCCEEEEEeCCCCeEEE
Confidence 8998876554 44566999999987654222110 0112345678999999999998876899999
Q ss_pred EECCCCceEEEeeC-----CCCCeEEEEEccCCCCEEEEEe-cCceEEEEECCCCcc-----ccceeeeeeecCCCCcce
Q psy9598 749 WDAFNGDLVQVLKG-----HTNEVFVLESHPFDSRVLLSAG-HDGLIIIWDILSSKQ-----RGYKWFHNIVEGQGEGAL 817 (1915)
Q Consensus 749 wD~~tg~~i~~l~g-----H~~~V~sl~~sp~dg~~LaSgs-~DG~I~IWdl~s~~~-----~~~~~~~~~~~~~~~~~V 817 (1915)
+|+.+++++..+.. |.+....+ ++|..+.+++++. .+++|.|+|..+... ..+..+. ..+.+.
T Consensus 369 iD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~----~~g~g~- 442 (567)
T 1qks_A 369 IDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP----ALGGGS- 442 (567)
T ss_dssp EETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE----CSCSCC-
T ss_pred EECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe----cCCCCC-
Confidence 99999998877754 43222222 5772345555553 468999999987321 1133332 222222
Q ss_pred EEEEEcCCCCEEEEEeC-------CCeEEEEeCCCC-----c-ccccC--------------CCceeecCCCCeeeec--
Q psy9598 818 FDGKWSPDGTTCALTDS-------YGHLLVYGLGGF-----K-RPQNI--------------PRELFFHTDYRTLNRP-- 868 (1915)
Q Consensus 818 ~~vafSpdg~~Lasg~~-------dG~I~Iwdl~s~-----~-~~~~l--------------~~~~~F~~d~~~Lv~~-- 868 (1915)
..++++|++++|.+... .++|.|||+.+. . .+..+ +.++.|.++|+.+...
T Consensus 443 ~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~ 522 (567)
T 1qks_A 443 LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVW 522 (567)
T ss_dssp CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEE
T ss_pred EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEee
Confidence 34678999999998763 459999999876 2 11222 2377899999877633
Q ss_pred ----CCCccceeecccCCCCCcCCCC
Q psy9598 869 ----NGLFEPTYDEVTNLPPHLMPPP 890 (1915)
Q Consensus 869 ----~~~~~~v~D~~t~~~p~~~~~p 890 (1915)
..+-+.|+|..|.......+.+
T Consensus 523 ~~~~~~~~i~v~D~~t~~~~~~i~~~ 548 (567)
T 1qks_A 523 NGKDQESALVVVDDKTLELKHVIKDE 548 (567)
T ss_dssp CCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cCCCCCCcEEEEECCCceEEEEeCCC
Confidence 1355778998887554444433
No 257
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.51 E-value=2.9e-12 Score=156.63 Aligned_cols=259 Identities=14% Similarity=0.079 Sum_probs=173.4
Q ss_pred CCEEEEEEeCCCCEEEEEe---------CCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC---C
Q psy9598 519 GEISDIAIDNRNILLAAGT---------VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---G 586 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs---------~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D---g 586 (1915)
..+..++| ||+.|+... .++.|.+||+.++.... + ..+.+++|+|+ +..|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpD----g~~la~~~~~~~~~ 83 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPD----GKKIAFMRANEEKK 83 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTT----SSEEEEEEEETTTT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCC----CCEEEEEEeccCCC
Confidence 34677777 888776642 25689999999887543 3 56889999994 4778777654 3
Q ss_pred e--EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC-------------------------
Q psy9598 587 C--IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD------------------------- 639 (1915)
Q Consensus 587 t--I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D------------------------- 639 (1915)
. |.+|++.++....... +.. +.+++|+|+|+.|+.++.+
T Consensus 84 ~~~l~~~~~~~g~~~~l~~-------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILE-------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp EEEEEEEETTTTEEEEEEE-------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------
T ss_pred cceEEEEECCCCceEEEEc-------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 3 7777777654221111 113 8899999999988887642
Q ss_pred --CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-------cEEEEEccCCceEEeeecccccCCC
Q psy9598 640 --HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-------TALIWYYKCSQWRFIRLDMNTCLPH 710 (1915)
Q Consensus 640 --g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG-------~I~IWDl~~~~~~~~~~~~~~~~~~ 710 (1915)
..|.+||+.+. ..+..+.. . .+..++|+|+| ++++++.++ ...||.+.++....+.
T Consensus 150 ~~~~l~~~d~~~~---~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~--------- 214 (347)
T 2gop_A 150 EKTTFWIFDTESE---EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMF--------- 214 (347)
T ss_dssp CEEEEEEEETTTT---EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEE---------
T ss_pred ccceEEEEECCCC---eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEec---------
Confidence 56888888432 22123333 3 78899999999 777776552 4456655444322211
Q ss_pred CccccccccccccEEEEEECCCCCEEEEEEecC-------CeEEEEECCCCceEEEeeCCCCCeEE-EEEccCCCCEEEE
Q psy9598 711 TKETSDETNKKIKVTMVAWDASDRWVITAINFN-------FQIKIWDAFNGDLVQVLKGHTNEVFV-LESHPFDSRVLLS 782 (1915)
Q Consensus 711 ~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D-------g~I~vwD~~tg~~i~~l~gH~~~V~s-l~~sp~dg~~LaS 782 (1915)
.+ ..+..+ +|+|++|+.++... ..|.+|| +++....+.+|...+.. +.|+ ++ ++++
T Consensus 215 --------~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s--dg-~~~~ 278 (347)
T 2gop_A 215 --------EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD--GK-VYFT 278 (347)
T ss_dssp --------EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--TE-EEEE
T ss_pred --------cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc--Cc-EEEE
Confidence 01 233333 89999988877522 4788888 67666666677778886 8897 56 9999
Q ss_pred EecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeE-EEEeCC
Q psy9598 783 AGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHL-LVYGLG 844 (1915)
Q Consensus 783 gs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I-~Iwdl~ 844 (1915)
++.+|.++|| +.++.. ..+. .+.+.|.+++|+| .++++++.++.. .||.+.
T Consensus 279 ~~~~~~~~l~-~~~g~~---~~~~-----~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGEI---KPIA-----KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEETTEEEEE-EESSSE---EEEE-----CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EecCCcEEEE-EcCCce---EEEe-----cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9999999999 875433 2221 2357799999999 677777777654 667665
No 258
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.49 E-value=6.3e-12 Score=169.92 Aligned_cols=282 Identities=10% Similarity=0.079 Sum_probs=187.8
Q ss_pred CCCCEEEEEECCC-----cEEEEECCCCcEEEEE------eCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCC
Q psy9598 486 KLGEVIVTGADDL-----LIKLWRARDGKLLATL------RGCSGEISDIAIDNRNILLAAGTVDK-----TIRIWNLQT 549 (1915)
Q Consensus 486 pdg~~LaTGs~Dg-----~I~IWd~~tg~~~~~l------~gH~~~I~~Lafspdg~~LaSgs~Dg-----tIrVWDl~t 549 (1915)
|+|.+++....++ .|.+.+..++.....+ .+|...+..++|||||++||.++.++ +|+|||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 6676666544321 3344444444332222 23445688999999999998776543 899999999
Q ss_pred CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe----------------EEEEecccCccccceeccCccccccc
Q psy9598 550 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC----------------IGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 550 g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt----------------I~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
++.+.....+. .+.+++|+|+ ++.|+.++.++. |.+|++.++.....+.+.
T Consensus 161 g~~~~~~~~~~-~~~~~~wspD----g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~-------- 227 (710)
T 2xdw_A 161 AKELPDVLERV-KFSCMAWTHD----GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE-------- 227 (710)
T ss_dssp TEEEEEEEEEE-CSCCEEECTT----SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC--------
T ss_pred CCCCcccccCc-ccceEEEEeC----CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec--------
Confidence 98776433332 3678999994 488888887766 999999876532122221
Q ss_pred cCCCCCceEEEEECCCCcEEEEEeC-----CCeEEEEEecCCC----CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGSG-----DHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 684 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs~-----Dg~I~IwDl~~~~----~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D 684 (1915)
...+...+..+.|+|+|++|+.++. +..|++||+.+.. ....+..+..+...+.. .|+++|..|+..+..
T Consensus 228 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~ 306 (710)
T 2xdw_A 228 FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNR 306 (710)
T ss_dssp CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECT
T ss_pred cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECC
Confidence 1123355788999999999888765 5689999985410 11124445566666655 488899887776653
Q ss_pred ----CcEEEEEccCCc---eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCc
Q psy9598 685 ----GTALIWYYKCSQ---WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGD 755 (1915)
Q Consensus 685 ----G~I~IWDl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~ 755 (1915)
+.|.+||+.++. |..+.. ......+..++|++++.+++++.. ++ .|++|++.+|+
T Consensus 307 ~~~~~~l~~~d~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~~~lv~~~~~-~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 307 HSPNYRLINIDFTDPEESKWKVLVP---------------EHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLHDLATGA 370 (710)
T ss_dssp TCTTCEEEEEETTSCCGGGCEEEEC---------------CCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEEETTTCC
T ss_pred CCCCCEEEEEeCCCCCcccceeccC---------------CCCCCeEEEEEEEcCCEEEEEEEE-CCEEEEEEEECCCCC
Confidence 359999987653 121110 001135777889876666666666 77 46777887888
Q ss_pred eEEEeeCCCCCeEEEEEccCCCCEEE-EEe---cCceEEEEECCCCc
Q psy9598 756 LVQVLKGHTNEVFVLESHPFDSRVLL-SAG---HDGLIIIWDILSSK 798 (1915)
Q Consensus 756 ~i~~l~gH~~~V~sl~~sp~dg~~La-Sgs---~DG~I~IWdl~s~~ 798 (1915)
.+..+..+.+.|..++++| ++..|+ +.+ ..++|++||+.+++
T Consensus 371 ~~~~l~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 371 LLKIFPLEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEECCCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEecCCCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888888888899999999 665444 433 35789999998877
No 259
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.47 E-value=9.8e-12 Score=148.76 Aligned_cols=245 Identities=11% Similarity=0.019 Sum_probs=172.0
Q ss_pred EecCCCCcEEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~-~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
.+..+.....+++|+|+|+ +++++..++.|.+|+..++ ...+..+...+.+|+|+++|.++++...++.|.+||..+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 4445667788999999998 7888888999999999887 667777888899999999999888877778999999988
Q ss_pred CceEEEeecC----CCCeEEEEeccCccCCCcEEEEEeC-----------------CCeEEEEecccCccccceeccCcc
Q psy9598 550 LAPISVLVGH----QGIITGVNFCPLEVNGFNYLASTST-----------------DGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 550 g~~~~~l~~h----~~~V~sl~fsp~~~~d~~~L~sgs~-----------------DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
+......... ...+.++++.|+ +.++++.+. .+.|..|+.. +. ....
T Consensus 100 g~~~~~~~~~~~~~~~~~~~i~~d~~----G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~------ 167 (296)
T 3e5z_A 100 GEWESIADSFEGKKLNSPNDVCLAPD----GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAP------ 167 (296)
T ss_dssp CCEEEEECEETTEECCCCCCEEECTT----SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEE------
T ss_pred CcEEEEeeccCCCCCCCCCCEEECCC----CCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEe------
Confidence 8765443322 235678999984 477776321 2345545443 21 1111
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCC-ceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcE
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP-LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTA 687 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~-~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I 687 (1915)
..+......++|+|+|+.|++.+.++.|.+|++...... .....+..+...+.+|+++++|.+++++ ++.|
T Consensus 168 ------~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v 239 (296)
T 3e5z_A 168 ------IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGV 239 (296)
T ss_dssp ------ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEE
T ss_pred ------ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeE
Confidence 122355788999999998877888899999999522222 1112223456677899999999866666 8899
Q ss_pred EEEEccCCceEEeeecccccCCCCccccccccccccEEEEEE-CCCCCEEEEEEecCCeEEEEECCCCceE
Q psy9598 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW-DASDRWVITAINFNFQIKIWDAFNGDLV 757 (1915)
Q Consensus 688 ~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~-spdg~~L~t~s~~Dg~I~vwD~~tg~~i 757 (1915)
.+|+.. ++..... ..+.. +++++| ++++..|++++. +.|..++..+..+.
T Consensus 240 ~~~~~~-g~~~~~~----------------~~~~~-~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 240 HVLTPD-GDELGRV----------------LTPQT-TSNLCFGGPEGRTLYMTVS--TEFWSIETNVRGLE 290 (296)
T ss_dssp EEECTT-SCEEEEE----------------ECSSC-CCEEEEESTTSCEEEEEET--TEEEEEECSCCBCC
T ss_pred EEECCC-CCEEEEE----------------ECCCC-ceeEEEECCCCCEEEEEcC--CeEEEEEccccccc
Confidence 999986 4322211 11223 778889 689999988875 45666777665543
No 260
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.45 E-value=2.7e-10 Score=135.39 Aligned_cols=285 Identities=8% Similarity=-0.012 Sum_probs=197.6
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe-ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEe
Q psy9598 514 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 592 (1915)
Q Consensus 514 l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l-~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWD 592 (1915)
+..+...+.+|+++++|.++++...++.|.+||.. +...... ..+...+.+|++.+. +.++++...++.|..|+
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD----GEVWFTENAANKIGRIT 84 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT----SCEEEEETTTTEEEEEC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC----CCEEEeCCCCCeEEEEC
Confidence 34455789999999999988877768899999988 5543322 234567899999874 46777777788999998
Q ss_pred cccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEc
Q psy9598 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs 672 (1915)
.. +. ...... ......+.+++++++|.++++...++.|.+||.. . .........+...+.++++.
T Consensus 85 ~~-g~-~~~~~~----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g--~~~~~~~~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 85 KK-GI-IKEYTL----------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-G--KIREYELPNKGSYPSFITLG 149 (299)
T ss_dssp TT-SC-EEEEEC----------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-C--CEEEEECSSTTCCEEEEEEC
T ss_pred CC-Cc-EEEEeC----------CCcCCCceeeEECCCCCEEEEecCCceEEEECCC-C--CEEEecCCCCCCCCceEEEc
Confidence 75 22 111111 0123568899999999888877778899999872 1 11222233345678999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 673 HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 673 pdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
++|.++++...++.|.+||. ++....... ......+..++++++|.++++... ++.|.+||.
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~---------------~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~- 211 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITE-SGDITEFKI---------------PTPASGPVGITKGNDDALWFVEII-GNKIGRITT- 211 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT-TCCEEEEEC---------------SSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-
T ss_pred CCCCEEEEeCCCCEEEEEcC-CCcEEEeeC---------------CCCCCcceeEEECCCCCEEEEccC-CceEEEECC-
Confidence 99988887777889999998 655432110 012345778999999986665544 789999999
Q ss_pred CCceEEE-eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEE
Q psy9598 753 NGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831 (1915)
Q Consensus 753 tg~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Las 831 (1915)
++..... +..+...+.+|++++ ++.++++...++.|.+||. ++. +..+. + ..+...+.++++ ++|.++++
T Consensus 212 ~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~---~~~~~--~-~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 212 SGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNI---IEEYP--I-QIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTE---EEEEE--C-SSSSCCEEEEEE-CSSCEEEE
T ss_pred CCcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CCc---eEEEe--C-CCCCCccceEEe-cCCCEEEE
Confidence 7765432 334556789999999 7887777667889999998 333 22221 1 123457899999 88887776
Q ss_pred EeCCCeEEEEeCCCC
Q psy9598 832 TDSYGHLLVYGLGGF 846 (1915)
Q Consensus 832 g~~dG~I~Iwdl~s~ 846 (1915)
+. .+.|..++..+.
T Consensus 283 ~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 283 ME-CDKIGKLTLIKD 296 (299)
T ss_dssp ET-TTEEEEEEEC--
T ss_pred ec-CCcEEEEEcCcc
Confidence 55 577888877654
No 261
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.43 E-value=6.2e-12 Score=170.00 Aligned_cols=247 Identities=11% Similarity=-0.022 Sum_probs=169.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEECCC-----cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCc-------
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGADDL-----LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKT------- 541 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~Dg-----~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dgt------- 541 (1915)
+|...+.+++|||||++||.++.++ .|+|||+.+|+.+.....+ ..+.+++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 5666789999999999999876644 8999999999877643322 23678999999999999988766
Q ss_pred ---------EEEEECCCCce--EEEee--cCCCCeEEEEeccCccCCCcEEEEEeC-----CCeEEEEeccc------Cc
Q psy9598 542 ---------IRIWNLQTLAP--ISVLV--GHQGIITGVNFCPLEVNGFNYLASTST-----DGCIGFWKYKL------DI 597 (1915)
Q Consensus 542 ---------IrVWDl~tg~~--~~~l~--~h~~~V~sl~fsp~~~~d~~~L~sgs~-----DgtI~iWDl~~------~~ 597 (1915)
|++|++.++.. ...+. .|...+.++.|+|+ +++|+.++. +..|.+||+.+ +.
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD----g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD----GRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT----SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC----CCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 99999988763 22333 35566889999994 477777664 56899999876 32
Q ss_pred c-ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC----CeEEEEEecCCCCCceeEEeccCCC--CeeEEE
Q psy9598 598 D-ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSD--KVDSIQ 670 (1915)
Q Consensus 598 ~-~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D----g~I~IwDl~~~~~~~~i~~l~~h~~--~V~sl~ 670 (1915)
. ...+. .+...+.. .|+++|..|+..+.. +.|.+|++.+.. ......+..|.. .+.+++
T Consensus 277 ~~~~~l~------------~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~~~~~~~~~ 342 (710)
T 2xdw_A 277 LKWVKLI------------DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE-ESKWKVLVPEHEKDVLEWVA 342 (710)
T ss_dssp CCCEEEE------------CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC-GGGCEEEECCCSSCEEEEEE
T ss_pred cceEEee------------CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC-cccceeccCCCCCCeEEEEE
Confidence 1 11111 12233333 488888877766553 369999985432 112234445544 688899
Q ss_pred EcCCCCEEEEEeCCCcEE--EEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe---cCCe
Q psy9598 671 WSHSHLRFVSGSRDGTAL--IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---FNFQ 745 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~--IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---~Dg~ 745 (1915)
|++++.+++++..||..+ +|++.++...... ..+...+..+++++++..|+.+.+ ..+.
T Consensus 343 ~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l----------------~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 406 (710)
T 2xdw_A 343 CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIF----------------PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGI 406 (710)
T ss_dssp EETTTEEEEEEEETTEEEEEEEETTTCCEEEEE----------------CCCSSEEEEEECCTTCSEEEEEEECSSCCCE
T ss_pred EEcCCEEEEEEEECCEEEEEEEECCCCCEEEec----------------CCCCceEEEEecCCCCCEEEEEEeCCCCCCE
Confidence 997777888888898654 5565455422111 112456788999999987775543 2468
Q ss_pred EEEEECCCCc
Q psy9598 746 IKIWDAFNGD 755 (1915)
Q Consensus 746 I~vwD~~tg~ 755 (1915)
|++||+.+++
T Consensus 407 i~~~d~~tg~ 416 (710)
T 2xdw_A 407 IYHCDLTKEE 416 (710)
T ss_dssp EEEEETTSSS
T ss_pred EEEEECCCCc
Confidence 9999998887
No 262
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.42 E-value=7.4e-12 Score=168.79 Aligned_cols=277 Identities=9% Similarity=-0.021 Sum_probs=179.2
Q ss_pred CCCCEEEEEECCC-----cEEEEECCCCcEEEEE------eCCCCCEEEEEEeCCCCEEE-----EEeCCCcEEEEECCC
Q psy9598 486 KLGEVIVTGADDL-----LIKLWRARDGKLLATL------RGCSGEISDIAIDNRNILLA-----AGTVDKTIRIWNLQT 549 (1915)
Q Consensus 486 pdg~~LaTGs~Dg-----~I~IWd~~tg~~~~~l------~gH~~~I~~Lafspdg~~La-----Sgs~DgtIrVWDl~t 549 (1915)
|+|.+++....++ .|.+.+...+.....+ .+|...+.+++|||||++|| +|+.+.+|+|||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 6777777665543 2344444455433333 24666799999999999998 344457899999999
Q ss_pred CceEEEeecCCCCe--EEEEeccCccCCCcEEEEEeCCCe-------------EEEEecccCccccceeccCcccccccc
Q psy9598 550 LAPISVLVGHQGII--TGVNFCPLEVNGFNYLASTSTDGC-------------IGFWKYKLDIDISKTVFHEPVMFNERI 614 (1915)
Q Consensus 550 g~~~~~l~~h~~~V--~sl~fsp~~~~d~~~L~sgs~Dgt-------------I~iWDl~~~~~~~~~~~~~~~~~~~~~ 614 (1915)
+..+. ..+...+ .+++|+|+ +..|+.++.|.. |.+|++.++.....+.+. .
T Consensus 157 g~~~~--~~~~~~~~~~~~~wspD----g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~--------~ 222 (695)
T 2bkl_A 157 GEWSK--VDVIEGGKYATPKWTPD----SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE--------R 222 (695)
T ss_dssp CCBCS--SCCBSCCTTCCCEECTT----SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC--------C
T ss_pred CCCcC--CcccCcccccceEEecC----CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe--------c
Confidence 88641 1122222 68999994 588999888776 999999877532222222 1
Q ss_pred CCCCCceEEEEECCCCcEEEEEeCCC----eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe---CCCcE
Q psy9598 615 RPGNAHILCSSFSPGGLFLATGSGDH----HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS---RDGTA 687 (1915)
Q Consensus 615 ~~~~~~V~~l~fspdg~~Lasgs~Dg----~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs---~DG~I 687 (1915)
..+...+.++.|+|+|++|+.++.++ .|.+|+.. .. ....+..+...+....| ++|.+++++. .++.|
T Consensus 223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~---~~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l 297 (695)
T 2bkl_A 223 TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG---EK-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRV 297 (695)
T ss_dssp CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT---CS-SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEE
T ss_pred CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC---CC-ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEE
Confidence 12335688999999999998877665 55555432 11 23344556666667667 5666444443 25789
Q ss_pred EEEEccCCc---eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEEeeCC
Q psy9598 688 LIWYYKCSQ---WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQVLKGH 763 (1915)
Q Consensus 688 ~IWDl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~-tg~~i~~l~gH 763 (1915)
.+||+.++. |..+.. ......+..++|+ ++.++++... |+..+||.+. ++..+..+..+
T Consensus 298 ~~~d~~~~~~~~~~~l~~---------------~~~~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~~~g~~~~~l~~~ 360 (695)
T 2bkl_A 298 FEVDPAKPARASWKEIVP---------------EDSSASLLSVSIV-GGHLSLEYLK-DATSEVRVATLKGKPVRTVQLP 360 (695)
T ss_dssp EEEBTTBCSGGGCEEEEC---------------CCSSCEEEEEEEE-TTEEEEEEEE-TTEEEEEEEETTCCEEEECCCS
T ss_pred EEEeCCCCCccCCeEEec---------------CCCCCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEeCCCCeeEEecCC
Confidence 999987654 122110 0113456778887 5556666665 8888877654 46667777665
Q ss_pred -CCCeEEEEEccCCCCEEE-EEe---cCceEEEEECCCCcc
Q psy9598 764 -TNEVFVLESHPFDSRVLL-SAG---HDGLIIIWDILSSKQ 799 (1915)
Q Consensus 764 -~~~V~sl~~sp~dg~~La-Sgs---~DG~I~IWdl~s~~~ 799 (1915)
.+.|..++++| ++..|+ +.+ ..++|++||+.+++.
T Consensus 361 ~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 361 GVGAASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp SSSEECCCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66788888998 666555 332 357899999988764
No 263
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.42 E-value=4e-11 Score=146.14 Aligned_cols=272 Identities=7% Similarity=-0.082 Sum_probs=185.5
Q ss_pred CCCcEEEEECCCCcEEEEEe------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEec
Q psy9598 496 DDLLIKLWRARDGKLLATLR------GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFC 569 (1915)
Q Consensus 496 ~Dg~I~IWd~~tg~~~~~l~------gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fs 569 (1915)
.++.|.+||..+++....+. .......+|++. ++.++++...++.|.+||..+++.+..+. .......|+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 37899999999998776541 122346778875 35556666668999999999999988885 34678899998
Q ss_pred cCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEec
Q psy9598 570 PLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMD 648 (1915)
Q Consensus 570 p~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~ 648 (1915)
+. +.++++...++.|.+||..++.....+..... .........+++ .++.++++.. .++.|.+||+.
T Consensus 93 ~~----g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 93 SD----EKAYVTQIWDYRIFIINPKTYEITGYIECPDM-------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp ET----TEEEEEEBSCSEEEEEETTTTEEEEEEECTTC-------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT
T ss_pred CC----CeEEEEECCCCeEEEEECCCCeEEEEEEcCCc-------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC
Confidence 73 35555554899999999988765433332210 000113445666 4454444443 48899999984
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC----------CcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 649 GVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD----------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 649 ~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D----------G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
+ ...+..+.. ......++++++|.+++++..+ +.|.+||..+++...... .
T Consensus 161 t---~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~-~-------------- 221 (328)
T 3dsm_A 161 T---DKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK-F-------------- 221 (328)
T ss_dssp T---TEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-C--------------
T ss_pred C---CeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe-c--------------
Confidence 3 233333332 2345788999999877776655 789999998876443210 0
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE--eeCCCCCeEEEEEccCCCCEEEEE----ecCceEEEE
Q psy9598 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV--LKGHTNEVFVLESHPFDSRVLLSA----GHDGLIIIW 792 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~--l~gH~~~V~sl~~sp~dg~~LaSg----s~DG~I~IW 792 (1915)
........++|+|++.+|+++. +.|.+||..+++.... +..+.....+++++|.++.++++. ..++.|.+|
T Consensus 222 ~~g~~p~~la~~~d~~~lyv~~---~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 222 KLGDWPSEVQLNGTRDTLYWIN---NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp CTTCCCEEEEECTTSCEEEEES---SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred CCCCCceeEEEecCCCEEEEEc---cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 0123568899999999998874 4899999988876421 222245689999999667777777 678999999
Q ss_pred ECCCCccccceeee
Q psy9598 793 DILSSKQRGYKWFH 806 (1915)
Q Consensus 793 dl~s~~~~~~~~~~ 806 (1915)
|.. ++. +..+.
T Consensus 299 d~~-g~~--~~~i~ 309 (328)
T 3dsm_A 299 SPQ-GKL--IDEFY 309 (328)
T ss_dssp CTT-CCE--EEEEE
T ss_pred CCC-CCE--EEEEE
Confidence 998 776 55544
No 264
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.42 E-value=3.2e-11 Score=144.26 Aligned_cols=254 Identities=11% Similarity=-0.069 Sum_probs=176.6
Q ss_pred CcEEEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC
Q psy9598 508 GKLLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 586 (1915)
Q Consensus 508 g~~~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg 586 (1915)
+..+..+..+.....+++|+++|+ +++++..++.|.+|+..++ ...+..+...+.+++|+++ +.++++...++
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~d----g~l~v~~~~~~ 90 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQ----GHLIACSHGLR 90 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTT----CCEEEEETTTT
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCC----CcEEEEecCCC
Confidence 344455556677789999999998 7888888999999999987 6667777888999999984 47777777778
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC---------------CeEEEEEecCCC
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD---------------HHVRVYKMDGVD 651 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D---------------g~I~IwDl~~~~ 651 (1915)
.|.+||..++.......... ......+.+++++++|.++++.+.. +.-.||.+...
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~--------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFE--------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEEEECSTTCCEEEEECEET--------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred eEEEEcCCCCcEEEEeeccC--------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 99999987764321111000 0011346789999999988873211 11245544322
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc-CCce-EEeeecccccCCCCccccccccccccEEEEEE
Q psy9598 652 SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK-CSQW-RFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 652 ~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
..+..+..+.....+++|+|+|..|++.+.++.|.+|++. .+.. ...... ......+..+++
T Consensus 162 --g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--------------~~~~~~p~~i~~ 225 (296)
T 3e5z_A 162 --GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--------------TVEPGKTDGLRV 225 (296)
T ss_dssp --SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--------------CCSSSCCCSEEE
T ss_pred --CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--------------eCCCCCCCeEEE
Confidence 2233445666778999999999988888888999999987 4443 110000 002233456899
Q ss_pred CCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEc-cCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 730 DASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH-PFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 730 spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~s-p~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+++|.+++++ ++.|.+|+.. ++.+..+..+.. +++++|. | ++..|++++.+| |..++..+...
T Consensus 226 d~~G~l~v~~---~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~-d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 226 DAGGLIWASA---GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGP-EGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp BTTSCEEEEE---TTEEEEECTT-SCEEEEEECSSC-CCEEEEEST-TSCEEEEEETTE-EEEEECSCCBC
T ss_pred CCCCCEEEEc---CCeEEEECCC-CCEEEEEECCCC-ceeEEEECC-CCCEEEEEcCCe-EEEEEcccccc
Confidence 9999866655 6789999986 888888888887 9999994 6 888888887764 44556655443
No 265
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.39 E-value=1.6e-11 Score=165.41 Aligned_cols=277 Identities=9% Similarity=-0.086 Sum_probs=175.5
Q ss_pred CCCCEEEEEeCCC-----cEEEEECCCCceEEEee------cCCCCeEEEEeccCccCCCcEEE-----EEeCCCeEEEE
Q psy9598 528 NRNILLAAGTVDK-----TIRIWNLQTLAPISVLV------GHQGIITGVNFCPLEVNGFNYLA-----STSTDGCIGFW 591 (1915)
Q Consensus 528 pdg~~LaSgs~Dg-----tIrVWDl~tg~~~~~l~------~h~~~V~sl~fsp~~~~d~~~L~-----sgs~DgtI~iW 591 (1915)
++|.+++....++ .|.+.+...+.....+. +|...+.+++|+|+ +++|+ .|+.+.+|++|
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPD----G~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWD----GKKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTT----SSEEEEEEEETTCSCCEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCC----CCEEEEEECCCCCceEEEEEE
Confidence 5566555544332 23333444444333332 35557899999994 47777 33445689999
Q ss_pred ecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCe-------------EEEEEecCCCC-CceeE
Q psy9598 592 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH-------------VRVYKMDGVDS-PLGIL 657 (1915)
Q Consensus 592 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~-------------I~IwDl~~~~~-~~~i~ 657 (1915)
|+.++..+...... . ....+++|+|||+.|+.++.+.. |++|++.+... ...+.
T Consensus 153 dl~tg~~~~~~~~~----------~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~ 220 (695)
T 2bkl_A 153 DVDSGEWSKVDVIE----------G--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH 220 (695)
T ss_dssp ETTTCCBCSSCCBS----------C--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred ECCCCCCcCCcccC----------c--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence 99988643100000 0 11257899999999999988776 99999843321 12344
Q ss_pred EeccCCCCeeEEEEcCCCCEEEEEeCCC----cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC
Q psy9598 658 EVEEHSDKVDSIQWSHSHLRFVSGSRDG----TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 733 (1915)
Q Consensus 658 ~l~~h~~~V~sl~fspdg~~L~sgs~DG----~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg 733 (1915)
....|...+.++.|+|+|++|+.++.++ .|.+|+..++.+..+. .+...+....| ++|
T Consensus 221 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~-----------------~~~~~~~~~~~-~~g 282 (695)
T 2bkl_A 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV-----------------KGVGAKYEVHA-WKD 282 (695)
T ss_dssp CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEE-----------------ECSSCCEEEEE-ETT
T ss_pred ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEee-----------------cCCCceEEEEe-cCC
Confidence 4445667889999999999988877666 5666655444433221 12223344455 566
Q ss_pred CEEEEEEe---cCCeEEEEECCCCce---EEEeeCC-CCCeEEEEEccCCCCEEEEEecCceEEEEECC-CCccccceee
Q psy9598 734 RWVITAIN---FNFQIKIWDAFNGDL---VQVLKGH-TNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL-SSKQRGYKWF 805 (1915)
Q Consensus 734 ~~L~t~s~---~Dg~I~vwD~~tg~~---i~~l~gH-~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~-s~~~~~~~~~ 805 (1915)
. |+..+. .++.|.+||+.++.. ...+..+ ...|..++|+ ++.+++++..||..+||.+. ++.. ...+
T Consensus 283 ~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~--~~~l 357 (695)
T 2bkl_A 283 R-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKP--VRTV 357 (695)
T ss_dssp E-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCE--EEEC
T ss_pred c-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCe--eEEe
Confidence 6 555443 257899999988763 3334333 4467888887 57789999999998888765 2333 2222
Q ss_pred eeeecCCCCcceEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCc
Q psy9598 806 HNIVEGQGEGALFDGKWSPDGTTCALTDS----YGHLLVYGLGGFK 847 (1915)
Q Consensus 806 ~~~~~~~~~~~V~~vafSpdg~~Lasg~~----dG~I~Iwdl~s~~ 847 (1915)
...+.+.|..++++|++..|+++.. .+.|++|++.+++
T Consensus 358 ----~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 358 ----QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ----CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ----cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 2233567788899999987775443 3789999998875
No 266
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.39 E-value=2.8e-13 Score=146.49 Aligned_cols=96 Identities=16% Similarity=0.300 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCCCcCCHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy9598 117 NWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQNK 196 (1915)
Q Consensus 117 ~~~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~Pmdl~ti~~kl~~~~Y~~~~~f~~D~~Lif~N~~~yN~~~ 196 (1915)
++...+..||..|..++.++||+.. .+|.||||.||++||+.+.|.++.+|..||.|||.||.+||.+.
T Consensus 75 el~~~l~~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~ 143 (183)
T 3lqh_A 75 ELQISLKQVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQ 143 (183)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCC
Confidence 4566688999999999999999873 25999999999999999999999999999999999999999955
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9598 197 RSKIYIMTTRLSEFAEEHLRRLTVRWNS 224 (1915)
Q Consensus 197 ~s~i~~~a~~l~~~f~~~~~~~~~~~~~ 224 (1915)
+.+.+++..|+.+|++++++++..++.
T Consensus 144 -~e~~~ag~~l~~~f~~~l~~vfpwf~~ 170 (183)
T 3lqh_A 144 -PEIKKANSMVKSFFIRQMERVFPWFSV 170 (183)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHCTTSCG
T ss_pred -hhhhhhhhHHHHHHHHHHHHHCCCCCc
Confidence 999999999999999999999999874
No 267
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.38 E-value=7.5e-10 Score=131.60 Aligned_cols=281 Identities=8% Similarity=-0.055 Sum_probs=195.2
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE-EEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA-TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~-~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg 550 (1915)
+......+.+|+++++|.++++...++.|.+|+.. +.... .+..+...+.+|+++++|.++++...++.|.+||.. +
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 44556789999999999988877778999999987 65543 233344679999999999988887778899999988 5
Q ss_pred ceEE-EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 551 APIS-VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 551 ~~~~-~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
.... .+......+.++++.+. +.++++...++.|..|+.. +... .... ......+.++++.++
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~~~~-g~~~-~~~~----------~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLN----GDIWFTQLNGDRIGKLTAD-GTIY-EYDL----------PNKGSYPAFITLGSD 156 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECST----TCEEEEETTTTEEEEECTT-SCEE-EEEC----------SSTTCCEEEEEECTT
T ss_pred CeEEecCCCCCCCCccceECCC----CCEEEEccCCCeEEEECCC-CCEE-EccC----------CCCCCCceeEEECCC
Confidence 5432 22224467899999873 4677777778899999876 4321 1111 112356889999999
Q ss_pred CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 630 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
|.+.++...++.|.+|+.. .. ........+...+.+|+++++|.++++....+.|.+|+. ++.......
T Consensus 157 g~l~v~~~~~~~i~~~~~~--g~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~------- 225 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNT--GK-LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI------- 225 (300)
T ss_dssp SSEEEEETTTTEEEEECTT--CC-EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC-------
T ss_pred CCEEEEecCCCeEEEECCC--Cc-EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC-------
Confidence 9977766667889999872 11 112223344567899999999987777777788999988 444332110
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE-eeCCCCCeEEEEEccCCCCEEEEEecCce
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGL 788 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs~DG~ 788 (1915)
......+.+++++++|...++... ++.|.+|+. ++..... +..+...+.++++.+ ++.++++.. . .
T Consensus 226 --------~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~-~ 292 (300)
T 2qc5_A 226 --------PTPNARPHAITAGKNSEIWFTEWG-ANQIGRITN-DNTIQEYQLQTENAEPHGITFGK-DGSVWFALK-C-K 292 (300)
T ss_dssp --------SSTTCCEEEEEECSTTCEEEEETT-TTEEEEECT-TSCEEEEECCSTTCCCCCEEECT-TSCEEEECS-S-E
T ss_pred --------CCCCCCceEEEECCCCCEEEeccC-CCeEEEECC-CCcEEEEECCccCCccceeEeCC-CCCEEEEcc-C-c
Confidence 012345788999999985555544 789999998 4554322 333455688899998 787666554 4 6
Q ss_pred EEEEEC
Q psy9598 789 IIIWDI 794 (1915)
Q Consensus 789 I~IWdl 794 (1915)
|..++.
T Consensus 293 i~~~~p 298 (300)
T 2qc5_A 293 IGKLNL 298 (300)
T ss_dssp EEEEEE
T ss_pred eEEeCC
Confidence 766664
No 268
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.37 E-value=1.2e-10 Score=142.02 Aligned_cols=246 Identities=9% Similarity=-0.078 Sum_probs=172.1
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
....+++++ ++.++++...++.|.+||..+++.+.++.. ......|++++++.++++...++.|.+||+.+++....+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 456778885 345555556678999999999999998863 467899999999855555547899999999999888776
Q ss_pred ecCC-----CCeEEEEeccCccCCCcEEEEEe-CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 557 VGHQ-----GIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 557 ~~h~-----~~V~sl~fsp~~~~d~~~L~sgs-~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
.... .....|++ . ++.++++.. .++.|.+||+.++.....+... ....+++++++|
T Consensus 122 ~~g~~~~~~~~p~~i~~-~----~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-------------~~p~~i~~~~dG 183 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ-Y----GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-------------IQPTSLVMDKYN 183 (328)
T ss_dssp ECTTCCTTTCBCCCEEE-E----TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-------------SCBCCCEECTTS
T ss_pred EcCCccccCCCcceEEE-E----CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-------------CCccceEEcCCC
Confidence 5433 14566777 2 234444444 4899999999987654433221 234578899999
Q ss_pred cEEEEEeCC----------CeEEEEEecCCCCCceeEEeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEE
Q psy9598 631 LFLATGSGD----------HHVRVYKMDGVDSPLGILEVEEH-SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF 699 (1915)
Q Consensus 631 ~~Lasgs~D----------g~I~IwDl~~~~~~~~i~~l~~h-~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~ 699 (1915)
++++++..+ +.|.+||..+ ......+... ......|+|+|++.+|+++.. .|.+||+.+++...
T Consensus 184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~t---~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~ 258 (328)
T 3dsm_A 184 KMWTITDGGYEGSPYGYEAPSLYRIDAET---FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV 258 (328)
T ss_dssp EEEEEBCCBCTTCSSCBCCCEEEEEETTT---TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS
T ss_pred CEEEEECCCccCCccccCCceEEEEECCC---CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee
Confidence 877776654 7899999843 2223233221 236889999999998888765 89999988776210
Q ss_pred eeecccccCCCCccccccccccccEEEEEECCCCCEEEEEE----ecCCeEEEEECCCCceEEEeeC
Q psy9598 700 IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI----NFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s----~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
. . ...........++++|++..|+++. ..++.|.+||.. ++.+..+..
T Consensus 259 ~-----------~---~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 259 R-----------P---FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp S-----------C---SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred e-----------e---eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 0 0 0001135678899999666666665 347899999997 988888763
No 269
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.36 E-value=3.8e-11 Score=141.02 Aligned_cols=241 Identities=7% Similarity=-0.042 Sum_probs=165.1
Q ss_pred cEEEEEEcCCCCEEE-EEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 478 AVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 478 ~V~~vafspdg~~La-TGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
...+|+++++|.+++ +.+.++.|.+|+..++........+...+.+|+++++|.++++.. ++.|.+||..+.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 778999999999777 547788999999866554332233445788999999999777666 889999998765543222
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
......+.+|++.+. +.++++...++.|.+|+..+.... .. ...+...+.+++++++|.++++.
T Consensus 104 ~~~~~~p~~i~~~~~----g~l~v~~~~~~~i~~~~~~~~~~~--~~----------~~~~~~~p~~i~~~~~g~l~v~~ 167 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQ----GAVYVADRGNNRVVKLAAGSKTQT--VL----------PFTGLNDPDGVAVDNSGNVYVTD 167 (270)
T ss_dssp CCSCSSEEEEEECTT----CCEEEEEGGGTEEEEECTTCCSCE--EC----------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred cCCcCCCcceEECCC----CCEEEEECCCCEEEEEECCCceeE--ee----------ccccCCCceeEEEeCCCCEEEEE
Confidence 233367899999984 467777777889999975443211 00 01112356789999999877777
Q ss_pred eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccc
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSD 716 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1915)
..++.|.+|+..+.. .......+...+.+|+++++|.++++...++.|.+|+.........
T Consensus 168 ~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~---------------- 228 (270)
T 1rwi_B 168 TDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL---------------- 228 (270)
T ss_dssp GGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC----------------
T ss_pred CCCCEEEEEecCCCc---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee----------------
Confidence 778899999984321 1222223336789999999998777777889999998865432110
Q ss_pred cccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy9598 717 ETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD 755 (1915)
Q Consensus 717 ~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~ 755 (1915)
.......+.+++++++|..+++... ++.|++|++...+
T Consensus 229 ~~~~~~~p~~i~~~~~g~l~v~~~~-~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 229 PFTGLNTPLAVAVDSDRTVYVADRG-NDRVVKLTSLEHH 266 (270)
T ss_dssp CCCSCSCEEEEEECTTCCEEEEEGG-GTEEEEECCCGGG
T ss_pred ccCCCCCceeEEECCCCCEEEEECC-CCEEEEEcCCCcc
Confidence 0112246789999999986555555 9999999986543
No 270
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.35 E-value=2e-10 Score=140.82 Aligned_cols=306 Identities=10% Similarity=0.027 Sum_probs=198.1
Q ss_pred EEEcCCCCEEEEEEC-----CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe----------CCCcEEEEE
Q psy9598 482 VLFDKLGEVIVTGAD-----DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWN 546 (1915)
Q Consensus 482 vafspdg~~LaTGs~-----Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs----------~DgtIrVWD 546 (1915)
+...|++++|++... ++.|.+.|..+++.+.++.....+ . |+++|||++|++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445788888888865 679999999999999999765555 4 99999999887765 367899999
Q ss_pred CCCCceEEEeecCC-------CCeEEEEeccCccCCCcEEEEEeC--CCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 547 LQTLAPISVLVGHQ-------GIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 547 l~tg~~~~~l~~h~-------~~V~sl~fsp~~~~d~~~L~sgs~--DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
+.+++.+..+.-.. .....++|+|+ +++|+++.. +++|.++|+.+++.+..+...
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD----Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~------------ 179 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPD----GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP------------ 179 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTT----SSEEEEEECSSSCEEEEEETTTTEEEEEEECC------------
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCC----CCEEEEEEcCCCCeEEEEECCCCcEEEEEECC------------
Confidence 99999988875321 24567999994 477777763 689999999998765555332
Q ss_pred CCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC----CCCee-EEEEc-CCCCEEEEEeCCCcEEEEE
Q psy9598 618 NAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH----SDKVD-SIQWS-HSHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 618 ~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h----~~~V~-sl~fs-pdg~~L~sgs~DG~I~IWD 691 (1915)
+ ....+......+++.+.||.+.+.++...... ......+ ...+. ...|. ++|.+++ .+.+|.|.+.|
T Consensus 180 -g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v--~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d 253 (386)
T 3sjl_D 180 -D--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP--EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQID 253 (386)
T ss_dssp -S--EEEEEEEETTEEEEEETTSCEEEEECCSSSCC--EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEE
T ss_pred -C--cceeecCCCceeEEECCCCCEEEEECCCCCeE--EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEE
Confidence 1 01122223445666677777777777432221 1111111 12221 23554 5675444 55689999999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec---------CCeEEEEECCCCceEEEeeC
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---------NFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---------Dg~I~vwD~~tg~~i~~l~g 762 (1915)
+.+........ . .... ............+..+++++++..++++... .+.|.++|+.+++.+..+..
T Consensus 254 ~~~~~~~v~~~-~-~~~~--~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v 329 (386)
T 3sjl_D 254 LSSGDAKFLPA-V-EALT--EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM 329 (386)
T ss_dssp CTTSSCEECCC-E-ESSC--HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred CCCCcceeecc-e-eccc--cccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC
Confidence 87664221100 0 0000 0000000111223357779999999887531 25799999999999998863
Q ss_pred CCCCeEEEEEccCCCC-EEEEE-ecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 763 HTNEVFVLESHPFDSR-VLLSA-GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 763 H~~~V~sl~~sp~dg~-~LaSg-s~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
- ..+++|++++ +++ +|+++ ..++.|.|+|..+++. +..+. ..+.-..+.+++|
T Consensus 330 g-~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~--~~~i~------~~~~p~~l~~s~d 384 (386)
T 3sjl_D 330 G-HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEE--LRSVN------QLGHGPQVITTAD 384 (386)
T ss_dssp E-EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCE--EEEEC------CCCSSCCEEEECC
T ss_pred C-CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcE--EEEec------CCCCCceeEECCc
Confidence 3 2578999999 765 66554 5589999999999988 66655 1233444555555
No 271
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.35 E-value=7.8e-11 Score=138.31 Aligned_cols=242 Identities=9% Similarity=-0.023 Sum_probs=167.4
Q ss_pred CEEEEEEeCCCCEEE-EEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 520 EISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 520 ~I~~Lafspdg~~La-Sgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
...+|+++++|.+++ +.+.++.|.+|+..++........+...+.+|++.+. +.++++.. ++.|.+||..+...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~----g~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA----GTVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTT----CCEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCC----CCEEEEcC-CCEEEEEeCCCceE
Confidence 678999999999777 5467899999998765543322334457889999884 36555555 88999999776532
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEE
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 678 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L 678 (1915)
. . +. ..+...+.+++++++|.++++...++.|.+|+... .........+...+.+|+++++|.++
T Consensus 100 ~-~--~~---------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~---~~~~~~~~~~~~~p~~i~~~~~g~l~ 164 (270)
T 1rwi_B 100 T-V--LP---------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS---KTQTVLPFTGLNDPDGVAVDNSGNVY 164 (270)
T ss_dssp E-E--CC---------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC---CSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred e-e--ee---------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC---ceeEeeccccCCCceeEEEeCCCCEE
Confidence 1 1 10 01225688999999999888777788999997522 12222122333467899999999977
Q ss_pred EEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 679 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 679 ~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
++...++.|.+||.......... ......+..++++++|..+++... ++.|.+|+........
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~~~----------------~~~~~~p~~i~~d~~g~l~v~~~~-~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVVLP----------------FTDITAPWGIAVDEAGTVYVTEHN-TNQVVKLLAGSTTSTV 227 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEECC----------------CSSCCSEEEEEECTTCCEEEEETT-TSCEEEECTTCSCCEE
T ss_pred EEECCCCEEEEEecCCCceEeec----------------ccCCCCceEEEECCCCCEEEEECC-CCcEEEEcCCCCccee
Confidence 77777889999998765532210 011245788999999965555544 8899999987655443
Q ss_pred EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 759 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 759 ~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
....+...+.+|++++ ++.++++...++.|.+|++...+.
T Consensus 228 ~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 228 LPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred eccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 3334446789999999 889999999999999999876544
No 272
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.35 E-value=7.8e-10 Score=137.04 Aligned_cols=285 Identities=11% Similarity=-0.004 Sum_probs=186.8
Q ss_pred EcCCCCEEEEEEC--CC---cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe----------CCCcEEEEECC
Q psy9598 484 FDKLGEVIVTGAD--DL---LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWNLQ 548 (1915)
Q Consensus 484 fspdg~~LaTGs~--Dg---~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs----------~DgtIrVWDl~ 548 (1915)
..|+++++++... .. +|.+||..+++.+.++.....+ .++|+|||++|+.+. .++.|.+||+.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4466776666543 22 8899999999999888754444 999999999998886 36789999999
Q ss_pred CCceEEEeecC-------CCCeEEEEeccCccCCCcEEEEEeC--CCeEEEEecccCccccc-eeccCccccccccCCCC
Q psy9598 549 TLAPISVLVGH-------QGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISK-TVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 549 tg~~~~~l~~h-------~~~V~sl~fsp~~~~d~~~L~sgs~--DgtI~iWDl~~~~~~~~-~~~~~~~~~~~~~~~~~ 618 (1915)
+++.+..+... ......++|+|+ +++|++++. +++|.++| .++..+.. +...
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spD----G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~------------- 167 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPN----NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP------------- 167 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCC----CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-------------
Confidence 98888776432 123458899994 488888764 57899999 88764333 2111
Q ss_pred CceEEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCceeE--EeccCCCC-eeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 619 AHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGIL--EVEEHSDK-VDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 619 ~~V~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i~--~l~~h~~~-V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
.|+.+.|++ ..+++.+.||.+.+|+. .......+. .......+ .....|.+++..++..+..+.+.+.|+..
T Consensus 168 ---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~ 243 (373)
T 2mad_H 168 ---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred ---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccC
Confidence 124455554 45566778888888887 332211110 00011112 12345666666555555788999999876
Q ss_pred CceEEee-ecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe---------cCCeEEEEECCCCceEEEeeCCC
Q psy9598 695 SQWRFIR-LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---------FNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 695 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---------~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
....... ..... . ..............+++++++..|+++.. ..+.|.++|+.+++.+..+...
T Consensus 244 ~~~~v~~~~~~~~---~--~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g- 317 (373)
T 2mad_H 244 AGATNKAPIDALS---G--GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG- 317 (373)
T ss_pred CcceEeeeeeecC---C--cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-
Confidence 5422111 00000 0 00001111233455789999999888753 1358999999999999988633
Q ss_pred CCeEEEEEccCCCC-EEEEEe-cCceEEEEECCCCcc
Q psy9598 765 NEVFVLESHPFDSR-VLLSAG-HDGLIIIWDILSSKQ 799 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~-~LaSgs-~DG~I~IWdl~s~~~ 799 (1915)
....+++|+| +++ +|+++. .++.|.|||+.+++.
T Consensus 318 ~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 318 HDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 3578999999 888 777777 589999999999887
No 273
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.32 E-value=8.8e-11 Score=159.49 Aligned_cols=279 Identities=14% Similarity=0.077 Sum_probs=175.5
Q ss_pred CCCCEEEEEECCCc---EEEEE--CC---CCcEEEEE------eCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEE
Q psy9598 486 KLGEVIVTGADDLL---IKLWR--AR---DGKLLATL------RGCSGEISDIAIDNRNILLAAGTVD-----KTIRIWN 546 (1915)
Q Consensus 486 pdg~~LaTGs~Dg~---I~IWd--~~---tg~~~~~l------~gH~~~I~~Lafspdg~~LaSgs~D-----gtIrVWD 546 (1915)
|+|.+++....++. ..||- .. .+.....+ .+|...+..++|||||++||.++.+ .+|+|||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 77888776654432 44554 33 33322221 2344468899999999999887654 4699999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCe--------------EEEEecccCccccceeccCcccccc
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC--------------IGFWKYKLDIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dgt--------------I~iWDl~~~~~~~~~~~~~~~~~~~ 612 (1915)
+.++..+... .+...+.+++|+| + +.|+.++.++. |.+|++.++.....+.+..
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wsp----D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~------ 263 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLG----N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT------ 263 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEEST----T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC------
T ss_pred CCCCCCCCcc-CCCceeccEEEEC----C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc------
Confidence 9999876532 1222346788998 5 67777776554 8889887664322222221
Q ss_pred ccCCCCCceEEEEECCCCcEEEEEeCCC-----eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC---
Q psy9598 613 RIRPGNAHILCSSFSPGGLFLATGSGDH-----HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD--- 684 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D--- 684 (1915)
..+...+.++.|+|+|++|+.++.++ .|++||+.+... .....+..+...+.... +++|..|+..+.+
T Consensus 264 --~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~ 339 (741)
T 1yr2_A 264 --PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-GPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAP 339 (741)
T ss_dssp --TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCT
T ss_pred --CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-cccEEecCCCCceEEEE-eccCCEEEEEECCCCC
Confidence 12223578999999999988877544 899999954310 11334445555555553 4889888887764
Q ss_pred -CcEEEEEccCC--ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEEe
Q psy9598 685 -GTALIWYYKCS--QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQVL 760 (1915)
Q Consensus 685 -G~I~IWDl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~-tg~~i~~l 760 (1915)
+.|.+||+.++ .+..+.. .+...+..++|+ ++.++++... ++..+||.+. ++..+..+
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~----------------~~~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVP----------------ESKDNLESVGIA-GNRLFASYIH-DAKSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEEC----------------CCSSEEEEEEEE-BTEEEEEEEE-TTEEEEEEEETTSCEEEEC
T ss_pred CCEEEEEeCCCCccccEEEec----------------CCCCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEeCCCCceeec
Confidence 45999998774 3332211 112235667777 4555555555 8877776543 46667777
Q ss_pred eC-CCCCeEEEEEccCCCC-EEEEEe---cCceEEEEECCCCcc
Q psy9598 761 KG-HTNEVFVLESHPFDSR-VLLSAG---HDGLIIIWDILSSKQ 799 (1915)
Q Consensus 761 ~g-H~~~V~sl~~sp~dg~-~LaSgs---~DG~I~IWdl~s~~~ 799 (1915)
.. +.+.|..++++| ++. ++++.+ ..++|++||+.+++.
T Consensus 402 ~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 402 SLPGIGSASGLSGRP-GDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp BCSSSCEEEEEECCB-TCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred cCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 65 367789999999 655 444443 358999999987764
No 274
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.31 E-value=2.9e-10 Score=134.91 Aligned_cols=225 Identities=11% Similarity=-0.039 Sum_probs=167.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCC-CCeE
Q psy9598 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ-GIIT 564 (1915)
Q Consensus 487 dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~-~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~-~~V~ 564 (1915)
.+++|++++.++.|.+||..+|+.+..+..+. ..+.+++++|+|++|+ +.++.|..||. +|+.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46899999999999999999999999998876 5789999999999998 34788999999 899999888653 5788
Q ss_pred EEEeccCccCCCcEEEEEeC-CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEE
Q psy9598 565 GVNFCPLEVNGFNYLASTST-DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVR 643 (1915)
Q Consensus 565 sl~fsp~~~~d~~~L~sgs~-DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~ 643 (1915)
++.+.+ ++++|++.+. ++.|..+|. .++.+....+.... ..+......+++.++|++|++...++.|.
T Consensus 81 ~~~~~~----dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 81 TARILP----DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI------ERPHAQFRQINKNKKGNYLVPLFATSEVR 149 (276)
T ss_dssp EEEECT----TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC------SSGGGSCSCCEECTTSCEEEEETTTTEEE
T ss_pred ccEECC----CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC------CcccccccCceECCCCCEEEEecCCCEEE
Confidence 888888 4588888887 788888876 45444443332110 01112344567899999999999999999
Q ss_pred EEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 644 VYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 644 IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
+||.. ...+..+..+ ..+.++.+.++|..+++++.++.|..||..+++.+....... .. ......
T Consensus 150 ~~d~~----G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~--~~--------~~~l~~ 214 (276)
T 3no2_A 150 EIAPN----GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND--IE--------GVQLFF 214 (276)
T ss_dssp EECTT----SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG--SB--------SCCCSE
T ss_pred EECCC----CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC--CC--------Cccccc
Confidence 99973 3445555443 456678889999999999999999999999888654332100 00 001245
Q ss_pred EEEEEECCCCCEEEEEE
Q psy9598 724 VTMVAWDASDRWVITAI 740 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s 740 (1915)
+..++..++|..+++..
T Consensus 215 ~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 215 VAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEEECTTSCEEEEEE
T ss_pred cccceEcCCCCEEEEec
Confidence 77888889998887764
No 275
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.30 E-value=3.8e-09 Score=125.43 Aligned_cols=280 Identities=7% Similarity=-0.029 Sum_probs=193.3
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE-EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc
Q psy9598 516 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS-VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 594 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~-~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~ 594 (1915)
.....+.+|+++++|.++++...++.|.+||.. +.... .+..+...+.+|++.+. +.++++...++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL----GDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT----SCEEEEETTTTEEEEECTT
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC----CCEEEEecCCCeEEEECCC
Confidence 345678999999999988887778999999988 55443 22234467889999873 4677776668899999877
Q ss_pred cCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC
Q psy9598 595 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674 (1915)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd 674 (1915)
+.. ..... ......+.++++.++|.++++...++.|..|+.. .. .....+......+.++++.++
T Consensus 92 -g~~-~~~~~----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~-~~~~~~~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 92 -GGF-TEYPL----------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GT-IYEYDLPNKGSYPAFITLGSD 156 (300)
T ss_dssp -SCE-EEEEC----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SC-EEEEECSSTTCCEEEEEECTT
T ss_pred -CCe-EEecC----------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CC-EEEccCCCCCCCceeEEECCC
Confidence 432 11111 1122568899999999888877778899999873 11 112223334567899999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC
Q psy9598 675 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG 754 (1915)
Q Consensus 675 g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg 754 (1915)
|.++++...++.|.+|+. ++....... ......+..++++++|..+++... .+.|.+|+. ++
T Consensus 157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~---------------~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~g 218 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITN-TGKLEEYPL---------------PTNAAAPVGITSGNDGALWFVEIM-GNKIGRITT-TG 218 (300)
T ss_dssp SSEEEEETTTTEEEEECT-TCCEEEEEC---------------SSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-TC
T ss_pred CCEEEEecCCCeEEEECC-CCcEEEeeC---------------CCCCCCcceEEECCCCCEEEEccC-CCEEEEEcC-CC
Confidence 997777766888999988 554332110 112345788999999976665544 678999998 56
Q ss_pred ceEEE-eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe
Q psy9598 755 DLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 833 (1915)
Q Consensus 755 ~~i~~-l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~ 833 (1915)
..... +..+...+.+|++.+ ++.++++...++.|.+|+. ++.. ..+. + ......+.+++++++|.++++..
T Consensus 219 ~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~---~~~~--~-~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 219 EISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DNTI---QEYQ--L-QTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TSCE---EEEE--C-CSTTCCCCCEEECTTSCEEEECS
T ss_pred cEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CCcE---EEEE--C-CccCCccceeEeCCCCCEEEEcc
Confidence 55443 334556789999999 7887777767899999998 4433 2222 1 12345688899999998666555
Q ss_pred CCCeEEEEeC
Q psy9598 834 SYGHLLVYGL 843 (1915)
Q Consensus 834 ~dG~I~Iwdl 843 (1915)
. .|..++.
T Consensus 291 -~-~i~~~~p 298 (300)
T 2qc5_A 291 -C-KIGKLNL 298 (300)
T ss_dssp -S-EEEEEEE
T ss_pred -C-ceEEeCC
Confidence 4 7777764
No 276
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.27 E-value=5.5e-10 Score=132.43 Aligned_cols=214 Identities=11% Similarity=-0.046 Sum_probs=158.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEeecCC-CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCc
Q psy9598 529 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ-GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEP 607 (1915)
Q Consensus 529 dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~-~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~ 607 (1915)
.+++|++++.|+.|.+||..+|+.+..+..+. ..+.++.++|+ +++|+ +.++.|..||. +++.+..+...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd----G~ilv--s~~~~V~~~d~-~G~~~W~~~~~-- 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA----GEILF--SYSKGAKMITR-DGRELWNIAAP-- 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT----SCEEE--ECBSEEEEECT-TSCEEEEEECC--
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC----CCEEE--eCCCCEEEECC-CCCEEEEEcCC--
Confidence 46789999999999999999999999998776 47889999984 47777 45788999998 67655444321
Q ss_pred cccccccCCCCCceEEEEECCCCcEEEEEeC-CCeEEEEEecCCCCCceeEEec------cCCCCeeEEEEcCCCCEEEE
Q psy9598 608 VMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVE------EHSDKVDSIQWSHSHLRFVS 680 (1915)
Q Consensus 608 ~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~------~h~~~V~sl~fspdg~~L~s 680 (1915)
....+.++.+.++|++|++.+. ++.|..++..+ ..+..+. .+......+++.++|.+|++
T Consensus 75 ---------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G----k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~ 141 (276)
T 3no2_A 75 ---------AGCEMQTARILPDGNALVAWCGHPSTILEVNMKG----EVLSKTEFETGIERPHAQFRQINKNKKGNYLVP 141 (276)
T ss_dssp ---------TTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS----CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred ---------CCccccccEECCCCCEEEEecCCCCEEEEEeCCC----CEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence 1245788999999999999887 77777776522 2222221 22234556778999999999
Q ss_pred EeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEe
Q psy9598 681 GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 760 (1915)
Q Consensus 681 gs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l 760 (1915)
.+.++.|.+||.. ++.+..... ...+.++.+.++|..++++.. ++.|..||..+|+.+..+
T Consensus 142 ~~~~~~v~~~d~~-G~~~w~~~~-----------------~~~~~~~~~~~~g~~~v~~~~-~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 142 LFATSEVREIAPN-GQLLNSVKL-----------------SGTPFSSAFLDNGDCLVACGD-AHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp ETTTTEEEEECTT-SCEEEEEEC-----------------SSCCCEEEECTTSCEEEECBT-TSEEEEECTTTCCEEEEE
T ss_pred ecCCCEEEEECCC-CCEEEEEEC-----------------CCCccceeEcCCCCEEEEeCC-CCeEEEEeCcCCcEEEEe
Confidence 9999999999988 765442211 012345677899999988877 789999999999999998
Q ss_pred eCCC------CCeEEEEEccCCCCEEEEEe
Q psy9598 761 KGHT------NEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 761 ~gH~------~~V~sl~~sp~dg~~LaSgs 784 (1915)
..+. ..+..++..+ ++.++++..
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~-~G~i~v~~~ 231 (276)
T 3no2_A 203 NANDIEGVQLFFVAQLFPLQ-NGGLYICNW 231 (276)
T ss_dssp EGGGSBSCCCSEEEEEEECT-TSCEEEEEE
T ss_pred cCCCCCCccccccccceEcC-CCCEEEEec
Confidence 7442 2367777777 777777663
No 277
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.26 E-value=6.2e-10 Score=136.44 Aligned_cols=299 Identities=11% Similarity=0.044 Sum_probs=191.6
Q ss_pred EEEeCCCCEEEEEeC-----CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe----------CCCeE
Q psy9598 524 IAIDNRNILLAAGTV-----DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS----------TDGCI 588 (1915)
Q Consensus 524 Lafspdg~~LaSgs~-----DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs----------~DgtI 588 (1915)
....|++..|++... ++.|.+.|..+++.+..+.....+ .++++|+ +.+|++++ .+++|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spD----G~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADD----GSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTT----SSCEEEEEEEEEETTEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCC----CCEEEEEcccccccccCCCCCEE
Confidence 345788988888765 679999999999999988765555 4999995 46666665 36789
Q ss_pred EEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC--CCeEEEEEecCCCCCceeEEeccCCCCe
Q psy9598 589 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG--DHHVRVYKMDGVDSPLGILEVEEHSDKV 666 (1915)
Q Consensus 589 ~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~--Dg~I~IwDl~~~~~~~~i~~l~~h~~~V 666 (1915)
.+||..+...+..+...... .. ........+.|+|+|++|+++.. ++.|.++|+.. ...+..+.-. + +
T Consensus 112 sviD~~t~~v~~~I~v~~g~----r~-~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t---~~vv~tI~v~-g-~ 181 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAP----RF-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG---KAFKRMLDVP-D-C 181 (386)
T ss_dssp EEECTTTCCEEEEEEETTCC----CC-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT---TEEEEEEECC-S-E
T ss_pred EEEECCCCeEEEEEECCCcc----cc-ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC---CcEEEEEECC-C-c
Confidence 99999988765554432100 00 00123456899999999888864 68999999943 3344444221 1 1
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccC-CceEEeeecccccCCCCccccccccccccEEEEEEC-CCCCEEEEEEecCC
Q psy9598 667 DSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDRWVITAINFNF 744 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s-pdg~~L~t~s~~Dg 744 (1915)
...+......|++.+.||.+.+.++.+ +...... ..... ...........|. ++|++++++ . +|
T Consensus 182 -~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~---~~~~~--------~~~~~~~~~~~~~~~dG~~~~vs-~-~g 247 (386)
T 3sjl_D 182 -YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH---TEVFH--------PEDEFLINHPAYSQKAGRLVWPT-Y-TG 247 (386)
T ss_dssp -EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE---CCCCS--------CTTSCBCSCCEEETTTTEEEEEB-T-TS
T ss_pred -ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee---cceec--------cccccccccceeEcCCCcEEEEe-C-CC
Confidence 222333456788889999999999876 4432111 00000 0000111123554 677665543 4 79
Q ss_pred eEEEEECCCCc--eEEEee---------C-CCCCeEEEEEccCCCCEEEEEec----------CceEEEEECCCCccccc
Q psy9598 745 QIKIWDAFNGD--LVQVLK---------G-HTNEVFVLESHPFDSRVLLSAGH----------DGLIIIWDILSSKQRGY 802 (1915)
Q Consensus 745 ~I~vwD~~tg~--~i~~l~---------g-H~~~V~sl~~sp~dg~~LaSgs~----------DG~I~IWdl~s~~~~~~ 802 (1915)
.|++.|+.++. .+..+. + ..+.+..+++++ ++..|+.+.. .+.|.+.|+.+++. +
T Consensus 248 ~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv--~ 324 (386)
T 3sjl_D 248 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--L 324 (386)
T ss_dssp EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--E
T ss_pred EEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCCeE--E
Confidence 99999997654 222221 0 112233467788 6666666542 25799999999888 6
Q ss_pred eeeeeeecCCCCcceEEEEEcCCCC-EEEEE-eCCCeEEEEeCCCCcccccCCC-----ceeecCC
Q psy9598 803 KWFHNIVEGQGEGALFDGKWSPDGT-TCALT-DSYGHLLVYGLGGFKRPQNIPR-----ELFFHTD 861 (1915)
Q Consensus 803 ~~~~~~~~~~~~~~V~~vafSpdg~-~Lasg-~~dG~I~Iwdl~s~~~~~~l~~-----~~~F~~d 861 (1915)
..+. -...+++|+|++|++ +|+++ ..+|.|.|+|..+++.+.+++. ++.+++|
T Consensus 325 ~~i~------vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 325 AKFE------MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEE------EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EEEE------CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 6655 113678999999997 66665 4589999999999988877654 4555544
No 278
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.25 E-value=1.2e-09 Score=131.18 Aligned_cols=245 Identities=11% Similarity=0.017 Sum_probs=166.1
Q ss_pred cCCCCcEEEEEEcCCCCEEEE-------EECCCcEEEEECCCCcEEEEEe----CCCCCEEEEEEeCC-CCEEEEEeCCC
Q psy9598 473 LGHLSAVFCVLFDKLGEVIVT-------GADDLLIKLWRARDGKLLATLR----GCSGEISDIAIDNR-NILLAAGTVDK 540 (1915)
Q Consensus 473 ~gH~~~V~~vafspdg~~LaT-------Gs~Dg~I~IWd~~tg~~~~~l~----gH~~~I~~Lafspd-g~~LaSgs~Dg 540 (1915)
.+......+++|+++|.++++ ++.++.|.+|+..+++...... ++...+.+++++++ |.++++.. .+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 344556789999999998888 6778999999998887654322 25567999999999 76555544 44
Q ss_pred cEEEEECCCCceEEE-eec----CCCCeEEEEeccCccCCCcEEEEEeCC---------------CeEEEEecccCcccc
Q psy9598 541 TIRIWNLQTLAPISV-LVG----HQGIITGVNFCPLEVNGFNYLASTSTD---------------GCIGFWKYKLDIDIS 600 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~-l~~----h~~~V~sl~fsp~~~~d~~~L~sgs~D---------------gtI~iWDl~~~~~~~ 600 (1915)
.|.+||.. +..... ... +...+.++++.+. +.++++...+ +.|..|+.. +.. .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~----g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~ 165 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE----GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-I 165 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT----SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-E
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC----CCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-E
Confidence 79999998 765433 221 1235889999884 4677766655 566666654 321 1
Q ss_pred ceeccCccccccccCCCCCceEEEEEC----CCCcEEEEE-eCCCeEEEEEecCCCCC---ceeEEeccCC-CCeeEEEE
Q psy9598 601 KTVFHEPVMFNERIRPGNAHILCSSFS----PGGLFLATG-SGDHHVRVYKMDGVDSP---LGILEVEEHS-DKVDSIQW 671 (1915)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~V~~l~fs----pdg~~Lasg-s~Dg~I~IwDl~~~~~~---~~i~~l~~h~-~~V~sl~f 671 (1915)
.. . .+......++|+ ++|..|+++ ..++.|.+|++...... ..+..+..+. ..+..|++
T Consensus 166 ~~-~-----------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 166 QV-D-----------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp EE-E-----------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred Ee-c-----------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 11 0 011346788999 999765554 56789999998421111 1222334444 56889999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 672 SHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 672 spdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
+++|.++++...++.|.+||..+++..... ..+...+.+++|+++|..|++++..++.|.+|++
T Consensus 234 d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~----------------~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRI----------------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp BTTCCEEEEEETTTEEEEECTTCBSCSEEE----------------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCCcEeEEE----------------eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 999998888888999999998755422111 0123568899999999977777654679999998
Q ss_pred CC
Q psy9598 752 FN 753 (1915)
Q Consensus 752 ~t 753 (1915)
..
T Consensus 298 ~~ 299 (314)
T 1pjx_A 298 QR 299 (314)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 279
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.24 E-value=4.4e-12 Score=137.10 Aligned_cols=98 Identities=15% Similarity=0.292 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCccccccCccchhhHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhcCC
Q psy9598 1531 FNWKNECREVLETLWVCPDSEPFRKPVDKLDHPDYDKIVIAPMDLGTIREELRGDNYESPIDFVKDVKRVFHNSRNYNQN 1610 (1915)
Q Consensus 1531 ~~~~~~~~~ll~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~Dv~lif~Na~~yN~~ 1610 (1915)
..+...+..||..|..++.++||+.. . ++.||||.||++||+.|.|.|+.+|..||.|||.||.+||.+
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y---------~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~ 142 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY---------R--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGG 142 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC---------C--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh---------h--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCC
Confidence 34556689999999999999999873 2 499999999999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9598 1611 KRSKIYIMTTRLSEFAEEHLRRLTVRWNSH 1640 (1915)
Q Consensus 1611 ~~s~i~~~a~~l~~~f~~~~~~~~~~~~~~ 1640 (1915)
. +.+...+..|+.+|.++++++...+...
T Consensus 143 ~-~e~~~ag~~l~~~f~~~l~~vfpwf~~~ 171 (183)
T 3lqh_A 143 Q-PEIKKANSMVKSFFIRQMERVFPWFSVK 171 (183)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHCTTSCGG
T ss_pred C-hhhhhhhhHHHHHHHHHHHHHCCCCCcc
Confidence 7 9999999999999999999999887644
No 280
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.23 E-value=3.5e-10 Score=153.57 Aligned_cols=245 Identities=11% Similarity=-0.044 Sum_probs=159.6
Q ss_pred CCCCeEEEEeccCccCCCcEEEEEeCC-----CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEE
Q psy9598 559 HQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL 633 (1915)
Q Consensus 559 h~~~V~sl~fsp~~~~d~~~L~sgs~D-----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~L 633 (1915)
|...+.+++|+|+ +++|+.++.+ ..|++||+.++..+... .. ...+..++|+|| +.|
T Consensus 161 ~~~~~~~~~~SPD----G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~------------~~~~~~~~wspD-~~l 222 (741)
T 1yr2_A 161 GATALDAWAASDD----GRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LK------------WVKFSGLAWLGN-DAL 222 (741)
T ss_dssp --EEEEEEEECTT----SSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EE------------EEESCCCEESTT-SEE
T ss_pred CCEEEEeEEECCC----CCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CC------------CceeccEEEECC-CEE
Confidence 3346889999994 4777776544 46999999988643211 00 012346899999 888
Q ss_pred EEEeCCCe--------------EEEEEecCCCC-CceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEEcc
Q psy9598 634 ATGSGDHH--------------VRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYK 693 (1915)
Q Consensus 634 asgs~Dg~--------------I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG-----~I~IWDl~ 693 (1915)
+.++.++. |++|++.+... ...+.....+...+.++.|+|+|++|+.++.++ .|.+||+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~ 302 (741)
T 1yr2_A 223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT 302 (741)
T ss_dssp EEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE
T ss_pred EEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC
Confidence 88876654 88888843221 122333333444688999999999888877554 79999988
Q ss_pred CC--c-eEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec---CCeEEEEECCCC--ceEEEeeCCCC
Q psy9598 694 CS--Q-WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---NFQIKIWDAFNG--DLVQVLKGHTN 765 (1915)
Q Consensus 694 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---Dg~I~vwD~~tg--~~i~~l~gH~~ 765 (1915)
++ . +..+.. +...+... ++++|..|+..+.. ++.|.+||+.++ .....+..+..
T Consensus 303 ~~~~~~~~~l~~-----------------~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 364 (741)
T 1yr2_A 303 NGKIGPVTALIP-----------------DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD 364 (741)
T ss_dssp TTEECCCEEEEC-----------------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS
T ss_pred CCCCcccEEecC-----------------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC
Confidence 76 3 322210 11122233 34889988887752 346999999875 34444555555
Q ss_pred CeEEEEEccCCCCEEEEEecCceEEEEECC-CCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe----CCCeEEE
Q psy9598 766 EVFVLESHPFDSRVLLSAGHDGLIIIWDIL-SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD----SYGHLLV 840 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~-s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~----~dG~I~I 840 (1915)
.+..++|+ ++.+++++..||..+||.+. ++.. ...+ ...+.+.|..++++|++..|+.+. ..+.|++
T Consensus 365 ~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~--~~~l----~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 436 (741)
T 1yr2_A 365 NLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKP--AGAV----SLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLA 436 (741)
T ss_dssp EEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCE--EEEC----BCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred eEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCc--eeec----cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 56677776 46788889999988887664 3333 2222 222356788999999998666443 3378999
Q ss_pred EeCCCCc
Q psy9598 841 YGLGGFK 847 (1915)
Q Consensus 841 wdl~s~~ 847 (1915)
|++.+++
T Consensus 437 ~d~~tg~ 443 (741)
T 1yr2_A 437 LDPATAK 443 (741)
T ss_dssp EETTTTE
T ss_pred EECCCCc
Confidence 9998875
No 281
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.23 E-value=1.8e-09 Score=129.63 Aligned_cols=251 Identities=8% Similarity=0.050 Sum_probs=167.3
Q ss_pred CCCCEEEEEEeCCCCEEEE-------EeCCCcEEEEECCCCceEEEee----cCCCCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 517 CSGEISDIAIDNRNILLAA-------GTVDKTIRIWNLQTLAPISVLV----GHQGIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 517 H~~~I~~Lafspdg~~LaS-------gs~DgtIrVWDl~tg~~~~~l~----~h~~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
.-....+++|+++|.++++ ++.++.|.+||..+++...... ++...+.++++.++. +.+++++. .
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~---g~l~v~~~-~ 91 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA---NQLFVADM-R 91 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS---SEEEEEET-T
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCC---CcEEEEEC-C
Confidence 3446789999999988888 5778999999998887643322 255678999998841 35444444 4
Q ss_pred CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC---------------CeEEEEEecCC
Q psy9598 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD---------------HHVRVYKMDGV 650 (1915)
Q Consensus 586 gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D---------------g~I~IwDl~~~ 650 (1915)
+.|.+||.. +.... ...... .......+.+++++++|.++++...+ +.|..|+..
T Consensus 92 ~~l~~~d~~-g~~~~-~~~~~~------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 161 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEE-IAKKDS------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-- 161 (314)
T ss_dssp TEEEEEETT-SCEEE-CCSBCT------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--
T ss_pred CCEEEEeCC-CCEEE-EEeccC------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--
Confidence 478899987 53211 101000 00112457899999999887776655 456566542
Q ss_pred CCCceeEEeccCCCCeeEEEEc----CCCCEEEEE-eCCCcEEEEEcc-CCceEEeeecccccCCCCcccccccccc-cc
Q psy9598 651 DSPLGILEVEEHSDKVDSIQWS----HSHLRFVSG-SRDGTALIWYYK-CSQWRFIRLDMNTCLPHTKETSDETNKK-IK 723 (1915)
Q Consensus 651 ~~~~~i~~l~~h~~~V~sl~fs----pdg~~L~sg-s~DG~I~IWDl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 723 (1915)
.. +..+..+......++|+ +++..|+++ +.++.|.+|++. .+........ .....+. ..
T Consensus 162 g~---~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~-----------~~~~~~~~~~ 227 (314)
T 1pjx_A 162 GQ---MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW-----------GHIPGTHEGG 227 (314)
T ss_dssp SC---EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE-----------EECCCCSSCE
T ss_pred CC---EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEE-----------EECCCCCCCC
Confidence 21 22222344557889999 999765544 567899999986 3432111000 0001112 45
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC-EEEEEecCceEEEEECCCC
Q psy9598 724 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSS 797 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~-~LaSgs~DG~I~IWdl~s~ 797 (1915)
+..++++++|.++++... ++.|.+||..+++.+..+..+...+.+++|++ ++. ++++...++.|..|++...
T Consensus 228 p~~i~~d~~G~l~v~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 228 ADGMDFDEDNNLLVANWG-SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEEEBTTCCEEEEEET-TTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred CCceEECCCCCEEEEEcC-CCEEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCCC
Confidence 678999999988777666 88999999988888888887778899999998 888 5555566789999998753
No 282
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.21 E-value=6.9e-10 Score=136.61 Aligned_cols=174 Identities=6% Similarity=-0.033 Sum_probs=135.7
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCc-----------EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-----------LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 546 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~-----------~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD 546 (1915)
.++.+++++.+.+||+|+.+ .++||++.+.. ..... .+.+ |++|+| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68999999999999999998 55669865433 11222 3566 999999 89999999 789999999
Q ss_pred CCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE
Q psy9598 547 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 547 l~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
+.+......+..|...|.++.+.+ ..+++++.||+|.+||+..+.... +...|.|++|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~------p~~av~~~dG~L~v~dl~~~~~~~----------------~~~~Vs~v~W 170 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVN------NTLVILNSVNDLSALDLRTKSTKQ----------------LAQNVTSFDV 170 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECS------SEEEEEETTSEEEEEETTTCCEEE----------------EEESEEEEEE
T ss_pred chhhhccCccceeecceeeEEecC------CCEEEEECCCCEEEEEccCCcccc----------------ccCCceEEEE
Confidence 988777777778888899888776 238889999999999998765321 1257999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe------c---cCCCCeeEEEEcCCCCEEEEEe
Q psy9598 627 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV------E---EHSDKVDSIQWSHSHLRFVSGS 682 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l------~---~h~~~V~sl~fspdg~~L~sgs 682 (1915)
||+| ++.|..||.|++|+..+... .....+ . +|...|.+|+|.+++.+|++-+
T Consensus 171 SpkG--~~vg~~dg~i~~~~~~~~~~-~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 171 TNSQ--LAVLLKDRSFQSFAWRNGEM-EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp CSSE--EEEEETTSCEEEEEEETTEE-EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCc--eEEEEcCCcEEEEcCCCccc-cccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999 78899999999998853221 002223 2 4788999999999999888744
No 283
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.21 E-value=2e-09 Score=134.27 Aligned_cols=289 Identities=9% Similarity=0.043 Sum_probs=187.1
Q ss_pred CCCCEEEEEECC-----CcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe----------CCCcEEEEECCCC
Q psy9598 486 KLGEVIVTGADD-----LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWNLQTL 550 (1915)
Q Consensus 486 pdg~~LaTGs~D-----g~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs----------~DgtIrVWDl~tg 550 (1915)
+++.++++.... +.|.++|+.+++.+.++.....+ .|+++|||++|+++. .++.|.++|+.++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 456665555442 69999999999999999755555 899999999888775 3678999999999
Q ss_pred ceEEEeecC-------CCCeEEEEeccCccCCCcEEEEEeC--CCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 551 APISVLVGH-------QGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 551 ~~~~~l~~h-------~~~V~sl~fsp~~~~d~~~L~sgs~--DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
+.+..+.-. ......+.|+|+ +++|+++.. +++|.+.|+.+.+.+..+....
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spD----Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--------------- 220 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPD----NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--------------- 220 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTT----SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---------------
T ss_pred cEEEEEECCCccccccCCCcceEEEcCC----CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---------------
Confidence 998877521 234567899984 478887764 6899999999987655443320
Q ss_pred EEEEECCCC-cEEEEEeCCCeEEEEEecCCCCCcee--EEeccCCCCe-eEEEEcCCCCEEEEEeCCCcEEEEEccCCce
Q psy9598 622 LCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGI--LEVEEHSDKV-DSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 697 (1915)
Q Consensus 622 ~~l~fspdg-~~Lasgs~Dg~I~IwDl~~~~~~~~i--~~l~~h~~~V-~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~ 697 (1915)
|....|+| ..+++.+.||.+.+.++ ........ ..+.....++ ..+.|.+++..++..+..|.|.+.|+.....
T Consensus 221 -~~~~~p~g~~~~v~~~~dG~~~~V~~-~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~ 298 (426)
T 3c75_H 221 -CYHIFPASPTVFYMNCRDGSLARVDF-ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA 298 (426)
T ss_dssp -EEEEEEEETTEEEEEETTSSEEEEEC-CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE
T ss_pred -ceeeccCCCcEEEEEcCCCCEEEEEC-CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce
Confidence 11122222 33444455555555555 11111100 0011111111 2356789988888778889999999876543
Q ss_pred EEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec---------CCeEEEEECCCCceEEEeeCCCCCeE
Q psy9598 698 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---------NFQIKIWDAFNGDLVQVLKGHTNEVF 768 (1915)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---------Dg~I~vwD~~tg~~i~~l~gH~~~V~ 768 (1915)
..... ........ ............+++++++..++++... ++.|.++|+.+++.+..+.... ..+
T Consensus 299 ~v~~~--~~~~~~~~--i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~ 373 (426)
T 3c75_H 299 TFRAP--IEALTEAE--RADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EID 373 (426)
T ss_dssp EECCC--EESSCTTT--GGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EEC
T ss_pred EEeee--eeeccccc--cccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcC
Confidence 22110 00000000 0000011122236899999988887531 3579999999999999886433 478
Q ss_pred EEEEccCCCC-EEEEEe-cCceEEEEECCCCccccceee
Q psy9598 769 VLESHPFDSR-VLLSAG-HDGLIIIWDILSSKQRGYKWF 805 (1915)
Q Consensus 769 sl~~sp~dg~-~LaSgs-~DG~I~IWdl~s~~~~~~~~~ 805 (1915)
+|+|+| +++ +|+++. .++.|.|+|+.+++. +..+
T Consensus 374 gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kv--v~tI 409 (426)
T 3c75_H 374 SINVSQ-DAEPLLYALSAGTQTLHIYDAATGEE--LRSV 409 (426)
T ss_dssp EEEECC-SSSCEEEEEETTTTEEEEEETTTCCE--EEEE
T ss_pred eEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCE--EEEe
Confidence 999999 887 888877 599999999999887 5544
No 284
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.20 E-value=1.9e-08 Score=124.64 Aligned_cols=260 Identities=7% Similarity=-0.116 Sum_probs=171.3
Q ss_pred ceeeeEEecCCCCcEEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCcEEEEEeCC-------CCCEEEEEEe
Q psy9598 465 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGA----------DDLLIKLWRARDGKLLATLRGC-------SGEISDIAID 527 (1915)
Q Consensus 465 ~~~~~~~l~gH~~~V~~vafspdg~~LaTGs----------~Dg~I~IWd~~tg~~~~~l~gH-------~~~I~~Lafs 527 (1915)
..++..++.....+ .++|+|||++|+++. .++.|.+||+.+++.+.++... ......++|+
T Consensus 56 t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s 133 (373)
T 2mad_H 56 SGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT 133 (373)
T ss_pred CCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC
Confidence 33444455433344 899999999999886 3678999999999888877532 1234589999
Q ss_pred CCCCEEEEEeC--CCcEEEEECCCCceEEE-eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec
Q psy9598 528 NRNILLAAGTV--DKTIRIWNLQTLAPISV-LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 604 (1915)
Q Consensus 528 pdg~~LaSgs~--DgtIrVWDl~tg~~~~~-l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~ 604 (1915)
|||++|++++. ++.|.++| .+++.+.. +.. .+ ++.+.|. +...+++.+.||.+.+||. ++........
T Consensus 134 pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~---~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~ 204 (373)
T 2mad_H 134 PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPG---APSTFYLLCAQGGLAKTDH-AGGAAGAGLV 204 (373)
T ss_pred CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeC---CCceEEEEcCCCCEEEEEC-CCcEEEEEec
Confidence 99999998874 57899999 99998877 542 22 2445553 2356778889999999999 6654321110
Q ss_pred cCccccccccCCCCCc-eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc----------CCCCeeEEEEcC
Q psy9598 605 HEPVMFNERIRPGNAH-ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE----------HSDKVDSIQWSH 673 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~-V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~----------h~~~V~sl~fsp 673 (1915)
. +. + ..... .....+.+++..++..+..+.|.+.|+.+.. ...+..+.- .......+++++
T Consensus 205 ~-~~-----~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~-~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~ 276 (373)
T 2mad_H 205 G-AM-----L-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG-ATNKAPIDALSGGRKADTWRPGGWQQVAYLK 276 (373)
T ss_pred c-cc-----c-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc-ceEeeeeeecCCcccccceecCceEeEEECC
Confidence 0 00 0 11111 1234566665554444567889999984321 111111110 122344578999
Q ss_pred CCCEEEEEeC----------CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEec
Q psy9598 674 SHLRFVSGSR----------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINF 742 (1915)
Q Consensus 674 dg~~L~sgs~----------DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~ 742 (1915)
++.+|+++.. .+.|.++|+.+.+.+.... ......+++|++||+ .++++...
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-----------------~g~~p~~i~~s~Dg~~~l~v~~~~ 339 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-----------------LGHDVDAISVAQDGGPDLYALSAG 339 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-----------------CCCCcCeEEECCCCCeEEEEEcCC
Confidence 9988877653 3579999998877543221 122467899999999 66666634
Q ss_pred CCeEEEEECCCCceEEEe
Q psy9598 743 NFQIKIWDAFNGDLVQVL 760 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l 760 (1915)
++.|.|||+.+++.+..+
T Consensus 340 ~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 340 TEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCeEEEEECCCCCEEeee
Confidence 899999999999998884
No 285
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.19 E-value=4e-09 Score=132.40 Aligned_cols=254 Identities=9% Similarity=0.004 Sum_probs=167.9
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC--cEEEEECCCCceE
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDK--TIRIWNLQTLAPI 553 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg--tIrVWDl~tg~~~ 553 (1915)
.....+|+|+++|.++++...++.|++||+.++.+...+..... .. ++|++++.+|+++..++ .|.+|+..++...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 45789999999999888888889999999988877766654333 33 99999999999888766 7899998766554
Q ss_pred EEe----ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc--eEEEEEC
Q psy9598 554 SVL----VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH--ILCSSFS 627 (1915)
Q Consensus 554 ~~l----~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~--V~~l~fs 627 (1915)
..+ ..+...+.+++++|.. ..|+.+..++.|..||..++......... ..++... ...++|+
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~----g~lyv~d~~~~I~~~d~~~~~~~~~~~~~--------~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETE----EWLYFVDSNKNFGRFNVKTQEVTLIKQLE--------LSGSLGTNPGPYLIYY 275 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTS----SEEEEECTTCEEEEEETTTCCEEEEEECC--------CCSCCCCSSCCEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCC----CeEEEEECCCcEEEEECCCCCEEEEeccc--------ccCCCCCCccccEEEe
Confidence 444 2245677899999832 45555777899999998866421110000 0001111 1289999
Q ss_pred C-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC---------------CCCeeEEEEcCCCCEEEEEe-CCCcEEEE
Q psy9598 628 P-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH---------------SDKVDSIQWSHSHLRFVSGS-RDGTALIW 690 (1915)
Q Consensus 628 p-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h---------------~~~V~sl~fspdg~~L~sgs-~DG~I~IW 690 (1915)
| ++.++++...++.|+.|+.++. +..+.++ -.....|+|+++|.++++-+ .++.|+.|
T Consensus 276 p~~g~lyv~d~~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 276 FVDSNFYMSDQNLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL 350 (409)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence 9 4667777777899999987432 2222222 24578999999999888877 88999999
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
++.++....+.-.... ............-.....|+++++|.++++-.. ++.|+.+++
T Consensus 351 ~~~~G~v~~~~g~~~~--~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~-n~~Ir~i~~ 408 (409)
T 3hrp_A 351 DILDGYVSTVAGQVDV--ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW-GKAIRKYAV 408 (409)
T ss_dssp ETTTTEEEEEEECTTC--BSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST-TCEEEEEEE
T ss_pred ECCCCEEEEEeCCCCC--CCcCCCChhceEeCCceEEEEcCCCCEEEEECC-CCeEEEEEe
Confidence 9877764332211000 000000001112346788999999655554444 788887764
No 286
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.17 E-value=4.6e-08 Score=121.12 Aligned_cols=301 Identities=10% Similarity=-0.024 Sum_probs=188.9
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCC---------CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeec
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCS---------GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG 558 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~---------~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~ 558 (1915)
+..|++++.++.|..||..+|+.+..+.... ..+.+.. ..++..|+.++.++.|..+|..+|+.+..+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 6788888889999999999999988776432 2232222 22355788888899999999999998877765
Q ss_pred CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC
Q psy9598 559 HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG 638 (1915)
Q Consensus 559 h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 638 (1915)
........... +..+++++.++.|..+|..++..+.......+... ....... ... +..+++++.
T Consensus 132 ~~~~~~~p~~~------~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~---~~~~~~~----~~~--~~~v~~g~~ 196 (376)
T 3q7m_A 132 AGEALSRPVVS------DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS---LRGESAP----TTA--FGAAVVGGD 196 (376)
T ss_dssp SSCCCSCCEEE------TTEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCCCC----EEE--TTEEEECCT
T ss_pred CCceEcCCEEE------CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee---ecCCCCc----EEE--CCEEEEEcC
Confidence 43322222222 25788889999999999998876655443311100 0001111 111 346778888
Q ss_pred CCeEEEEEecCCCCCceeEEeccCC--CC--------e-eEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccccc
Q psy9598 639 DHHVRVYKMDGVDSPLGILEVEEHS--DK--------V-DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC 707 (1915)
Q Consensus 639 Dg~I~IwDl~~~~~~~~i~~l~~h~--~~--------V-~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~ 707 (1915)
+|.|..+|..+. ..+....... +. + ....+ .+..+++++.+|.|..+|..+++...... .
T Consensus 197 ~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~-~--- 267 (376)
T 3q7m_A 197 NGRVSAVLMEQG---QMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRE-L--- 267 (376)
T ss_dssp TTEEEEEETTTC---CEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEEC-C---
T ss_pred CCEEEEEECCCC---cEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeecc-C---
Confidence 999999998432 2222222110 00 1 01111 24578888889999999999887543211 0
Q ss_pred CCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC-CCCCeEEEEEccCCCCEEEEEecC
Q psy9598 708 LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 708 ~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g-H~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
.....+.. ++..|++++. ++.|..+|..+|+.+..... ....+....+. +..|+.++.+
T Consensus 268 --------------~~~~~~~~--~~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~ 327 (376)
T 3q7m_A 268 --------------GSVNDFIV--DGNRIYLVDQ-NDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSE 327 (376)
T ss_dssp --------------CCEEEEEE--ETTEEEEEET-TCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTT
T ss_pred --------------CCCCCceE--ECCEEEEEcC-CCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCC
Confidence 11222333 3667777777 89999999999998877762 22223333332 4678889999
Q ss_pred ceEEEEECCCCccccceeeeeeecCCCCcceE-EEEEcCCCCEEEEEeCCCeEEEEe
Q psy9598 787 GLIIIWDILSSKQRGYKWFHNIVEGQGEGALF-DGKWSPDGTTCALTDSYGHLLVYG 842 (1915)
Q Consensus 787 G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~-~vafSpdg~~Lasg~~dG~I~Iwd 842 (1915)
|.|.+||..+++. +..+. +. ...+. .... .+..|++++.+|.|+.|+
T Consensus 328 g~l~~~d~~tG~~--~~~~~--~~---~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 328 GYLHWINVEDGRF--VAQQK--VD---SSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp SEEEEEETTTCCE--EEEEE--CC---TTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CeEEEEECCCCcE--EEEEe--cC---CCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 9999999999887 44433 11 11111 1111 256788889999999886
No 287
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=2.9e-09 Score=142.33 Aligned_cols=329 Identities=8% Similarity=-0.031 Sum_probs=202.0
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCC-----------EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGE-----------ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~-----------I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
+..|++++.++.|..+|..+|+.+..+...... ...+++ ++..|+.++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 567888888899999999999999988644210 112333 4568888899999999999999999888
Q ss_pred ecC-CC-CeEEEEeccCccCCCcEEEEEeC------CCeEEEEecccCccccceeccCccc---c--------ccccC--
Q psy9598 557 VGH-QG-IITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVM---F--------NERIR-- 615 (1915)
Q Consensus 557 ~~h-~~-~V~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~~~~~~~---~--------~~~~~-- 615 (1915)
..+ .. ....+...|.- .+..+++++. +|.|..||..+++.+.......+.. + ...+.
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 754 20 00111112211 1245555553 7999999999998776654432110 0 00000
Q ss_pred -------CCCCceEEEEECCCCcEEEEEeCCC-------------------eEEEEEecCCCCCceeEEec--cCC----
Q psy9598 616 -------PGNAHILCSSFSPGGLFLATGSGDH-------------------HVRVYKMDGVDSPLGILEVE--EHS---- 663 (1915)
Q Consensus 616 -------~~~~~V~~l~fspdg~~Lasgs~Dg-------------------~I~IwDl~~~~~~~~i~~l~--~h~---- 663 (1915)
.+......+++++++..|++++.++ .|..+|..+ ...+..+. .|.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T---G~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT---GKYKWHYQETPGDNWDY 309 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT---CCEEEEEESSTTCCSCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC---CCEEEEEecCCCccccc
Confidence 1112223678899888888887764 488888743 23333322 221
Q ss_pred ---CCeeEEEEcCCC---CEEEEEeCCCcEEEEEccCCceEEeeeccccc------CCCCcc-------------cc-cc
Q psy9598 664 ---DKVDSIQWSHSH---LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC------LPHTKE-------------TS-DE 717 (1915)
Q Consensus 664 ---~~V~sl~fspdg---~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~------~~~~~~-------------~~-~~ 717 (1915)
.....+....+| ..|++++.+|.|.++|..+++.+......... ...... .. ..
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 122223334467 68999999999999999999865432111000 000000 00 00
Q ss_pred ccccccEEEEEECCCCCEEEEEEec------------------------------------------CCeEEEEECCCCc
Q psy9598 718 TNKKIKVTMVAWDASDRWVITAINF------------------------------------------NFQIKIWDAFNGD 755 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t~s~~------------------------------------------Dg~I~vwD~~tg~ 755 (1915)
.+. ..-..++++|++.++++.... .|.|..||+.+++
T Consensus 390 ~G~-~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 390 YGA-HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TCS-SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred ccc-cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 000 111257889998888876530 2789999999999
Q ss_pred eEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEE
Q psy9598 756 LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 832 (1915)
Q Consensus 756 ~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg 832 (1915)
.+..+... ..+....+.. .+.++++++.||.|++||+.+++. +..+.. . +.....-+.|+.+|+.+++.
T Consensus 469 ~~W~~~~~-~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~--lw~~~~--~--~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 469 AAWSVEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEK--LWEAPT--G--TGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp EEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEEC--S--SCCCSCCEEEEETTEEEEEE
T ss_pred EEeecCCC-CCCcCcceEe-CCCEEEEECCCCcEEEEECCCCce--eeeeeC--C--CCcccCCEEEEeCCEEEEEE
Confidence 98887633 3344444555 677888899999999999999998 666551 1 11222345567788755443
No 288
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.14 E-value=7.4e-09 Score=138.62 Aligned_cols=329 Identities=10% Similarity=0.044 Sum_probs=199.9
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCC----------E-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGE----------I-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~----------I-~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
+..|++++.++.|..+|..+|+.+..+..+... + ..+++ .+..|++++.|+.|..||..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 667888888999999999999999988644321 1 11222 3557888999999999999999998877
Q ss_pred ecC--CCCeEEEEeccCccCCCcEEEEEe------CCCeEEEEecccCccccceecc--Ccccc---------ccccC--
Q psy9598 557 VGH--QGIITGVNFCPLEVNGFNYLASTS------TDGCIGFWKYKLDIDISKTVFH--EPVMF---------NERIR-- 615 (1915)
Q Consensus 557 ~~h--~~~V~sl~fsp~~~~d~~~L~sgs------~DgtI~iWDl~~~~~~~~~~~~--~~~~~---------~~~~~-- 615 (1915)
... ......+..+|.- .+ ..+++++ .+|.|..||..+++.+...... .+... .....
T Consensus 148 ~~~~~~~~~~~~~~sP~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRV-VN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp ECCSCTTSCCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred cCcCCCCCCccccCCcEE-EC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 642 1111222223321 12 3445544 3789999999999876654421 01000 00000
Q ss_pred ------CCCCceEEEEECCCCcEEEEEeCCCe-------------------EEEEEecCCCCCceeEEecc--CC-----
Q psy9598 616 ------PGNAHILCSSFSPGGLFLATGSGDHH-------------------VRVYKMDGVDSPLGILEVEE--HS----- 663 (1915)
Q Consensus 616 ------~~~~~V~~l~fspdg~~Lasgs~Dg~-------------------I~IwDl~~~~~~~~i~~l~~--h~----- 663 (1915)
.+......+++++++.+|++++.++. |..||..+ ...+..+.. |.
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T---G~~~W~~~~~~~d~wd~~ 302 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT---GEYVWHYQTTPGDAWDYT 302 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT---CCEEEEEESSTTCCSCCC
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC---CceeEeeecCCccccccc
Confidence 11112236788998889999988764 88999843 333333332 21
Q ss_pred --CCeeEEEEcCCCC---EEEEEeCCCcEEEEEccCCceEEeeecccccC---------------------CCCcc--cc
Q psy9598 664 --DKVDSIQWSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL---------------------PHTKE--TS 715 (1915)
Q Consensus 664 --~~V~sl~fspdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~---------------------~~~~~--~~ 715 (1915)
..+....+..+|. .|+.++.+|.++++|..+++.+.......... +.... ..
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 1222222233564 78899999999999999998653221100000 00000 00
Q ss_pred ccccccccEEEEEECCCCCEEEEEEec--------------------------------------------CCeEEEEEC
Q psy9598 716 DETNKKIKVTMVAWDASDRWVITAINF--------------------------------------------NFQIKIWDA 751 (1915)
Q Consensus 716 ~~~~~~~~V~~va~spdg~~L~t~s~~--------------------------------------------Dg~I~vwD~ 751 (1915)
...........++|+|+..+|++.... +|.|..||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 000000112237888988888876431 378999999
Q ss_pred CCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEE
Q psy9598 752 FNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831 (1915)
Q Consensus 752 ~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Las 831 (1915)
.+|+.+..+..+.. +....+.. .+.+|++|+.||.|++||..+|+. +..+.. .+.....-+.|+.+|+..++
T Consensus 463 ~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~--lw~~~~----~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 463 VKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEK--LWEQPA----ASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEEC----SSCCCSCCEEEEETTEEEEE
T ss_pred CCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCcc--ceeeeC----CCCcccCceEEEECCEEEEE
Confidence 99999988876543 33334455 678899999999999999999998 665541 11112233667788875443
No 289
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.11 E-value=2.5e-08 Score=125.16 Aligned_cols=255 Identities=9% Similarity=0.024 Sum_probs=162.5
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC--eEEEEecccC
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG--CIGFWKYKLD 596 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg--tI~iWDl~~~ 596 (1915)
.....|+|++++.++++...++.|++||+.++.....+.... ... ++|++. ++.|+++..++ .|.+|+...+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~----g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKD----KQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTT----SSEEEEEBSSTTCEEEEEEGGGT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecC----CCcEEEEecCCCceEEEEEcCCC
Confidence 357899999999988888888999999999887766555432 233 899984 47888887766 7888887655
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE-E--eccCCCCe--eEEEE
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL-E--VEEHSDKV--DSIQW 671 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~-~--l~~h~~~V--~sl~f 671 (1915)
......... .......+.+++++|++..|+++..++.|+.||..+.. ..+. . ..++.... ..|+|
T Consensus 205 ~~~~~~g~~--------~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 205 WAPTRIGQL--------GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp TCEEEEEEC--------CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEE
T ss_pred ceeEEeeec--------cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEE
Confidence 321111000 00123556789999954455557778899999984322 1111 0 12222222 39999
Q ss_pred cCC-CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 672 SHS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 672 spd-g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
+|+ +.++++...++.|+.|+..... .. ...... .............-.....++++++|.++++-...++.|++|+
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~~-~~-~~g~~~-~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGEC-EW-FCGSAT-QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCCE-EE-EEECTT-CCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCCE-EE-EEeCCC-CCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 995 6666666778899999876542 11 111100 0000000000111235788999999995555440489999999
Q ss_pred CCCCceEEEeeCC---------------CCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 751 AFNGDLVQVLKGH---------------TNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 751 ~~tg~~i~~l~gH---------------~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+.++.. .++.++ -.....|++++ ++.++++-..++.|+.+++
T Consensus 352 ~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 352 ILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 877764 444444 23578999999 7888888888888888765
No 290
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.10 E-value=2.3e-09 Score=131.38 Aligned_cols=275 Identities=9% Similarity=0.018 Sum_probs=172.4
Q ss_pred CcEEEEEEcCCCCEEEEEE--CCCcEEEEECCCCcEEEEE-------eCCCCCEEEEEEeCCCCEEEEEeC-----CCcE
Q psy9598 477 SAVFCVLFDKLGEVIVTGA--DDLLIKLWRARDGKLLATL-------RGCSGEISDIAIDNRNILLAAGTV-----DKTI 542 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs--~Dg~I~IWd~~tg~~~~~l-------~gH~~~I~~Lafspdg~~LaSgs~-----DgtI 542 (1915)
..+..|+++++|+++++.. .++.+.||.+.++.+. .+ .+|-..+.+|+|+++++++++.+. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 7899999999999988864 2343566665566543 22 235568999999999987776543 5789
Q ss_pred EEEECCCCceEEEeecC------CCCeEEEEeccCccCCCcEEEEEe---CCCeEEEEecccCccccceeccCccccccc
Q psy9598 543 RIWNLQTLAPISVLVGH------QGIITGVNFCPLEVNGFNYLASTS---TDGCIGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 543 rVWDl~tg~~~~~l~~h------~~~V~sl~fsp~~~~d~~~L~sgs---~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
.+||+.+++.+..+..+ ...+..|++.+. ++..+++.+ .++.|.+||+.++........+. .
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~---~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~------~ 166 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI---HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP------G 166 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT---TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT------T
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecC---CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC------c
Confidence 99999999877766532 235689999873 235556655 67899999998765322111100 0
Q ss_pred cCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
..+. . ..+.++|..+.+++.+|.+..|.. .+..|+|+|+|..|+++..++. ++|.+.
T Consensus 167 ~~~~--~---~~~~~~g~~~~~~~~~g~~~~~~~-----------------~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 167 IAPE--D---IDLVIDGVPVQIGQPDGTVIRPHL-----------------GVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp TSCC--S---CCCEETTEECBEECTTSCEECCCC-----------------CEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred cccc--c---cceeECCEEEEeccCCCceeceec-----------------ccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 0000 0 234446766777777777766532 3578999999998888877664 455443
Q ss_pred CCceEEeeecccccCCCCccc--cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC-CCCCeEEE
Q psy9598 694 CSQWRFIRLDMNTCLPHTKET--SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-HTNEVFVL 770 (1915)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g-H~~~V~sl 770 (1915)
..... .......... ....+.......++++++|.++++... ++.|.+||..+++....... +...+.+|
T Consensus 224 ~~~~~------~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~-~~~V~~~d~~~G~~~~~~~~~~~~~p~~v 296 (343)
T 2qe8_A 224 SADLS------NLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLA-HSAIGVITSADRAYKLLVTDEKLSWTDSF 296 (343)
T ss_dssp HHHHT------CTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGG-GTEEEEEETTTTEEEEEEECGGGSCEEEE
T ss_pred HHHhc------CCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccC-CCeEEEEECCCCCEEEEEECCceecCCee
Confidence 21100 0000000000 000012224556899999987766655 89999999866765444332 24568999
Q ss_pred EEccCCCCEEEEEecCceEEEE
Q psy9598 771 ESHPFDSRVLLSAGHDGLIIIW 792 (1915)
Q Consensus 771 ~~sp~dg~~LaSgs~DG~I~IW 792 (1915)
+|.+ ++.++++.+..+.+.+|
T Consensus 297 a~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 297 NFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EECT-TSCEEEEECCGGGSGGG
T ss_pred EECC-CCcEEEEeCcccccccc
Confidence 9998 78888877755544433
No 291
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.08 E-value=5e-08 Score=116.71 Aligned_cols=235 Identities=9% Similarity=0.029 Sum_probs=156.0
Q ss_pred EecCCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 471 VNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
.+..+..-.-+.+|+++ +.++++...++.|..||..++... .+. +...+.+++++++|+++++ . ++.|.+||..+
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 34455566778999995 556667777899999999888653 333 4568999999999996655 4 56799999988
Q ss_pred CceEEEeec----CCCCeEEEEeccCccCCCcEEEEEeCC---------CeEEEEecccCccccceeccCccccccccCC
Q psy9598 550 LAPISVLVG----HQGIITGVNFCPLEVNGFNYLASTSTD---------GCIGFWKYKLDIDISKTVFHEPVMFNERIRP 616 (1915)
Q Consensus 550 g~~~~~l~~----h~~~V~sl~fsp~~~~d~~~L~sgs~D---------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~ 616 (1915)
+........ ....++++++.|+ ++++++.... ....+|.+.......... .
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~d----G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~------------~ 146 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPA----GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF------------D 146 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTT----SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE------------E
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCC----CCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe------------e
Confidence 775433322 1235788999884 4655544321 234555554322111110 1
Q ss_pred CCCceEEEEECCCCcEE-EEEeCCCeEEEEEecC-CCCC---ceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy9598 617 GNAHILCSSFSPGGLFL-ATGSGDHHVRVYKMDG-VDSP---LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~L-asgs~Dg~I~IwDl~~-~~~~---~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWD 691 (1915)
+......++|+|+++.| ++.+.++.|.+|+++. .... ..+..+..+.+....++++++|.+.++....+.|.+||
T Consensus 147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD 226 (297)
T ss_dssp EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence 11346789999999866 4555678999999841 1111 11223334456788999999998888888888999999
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEEC-CCCCEEEEEEe
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDRWVITAIN 741 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s-pdg~~L~t~s~ 741 (1915)
..+++...... .....+++++|. |++..|++++.
T Consensus 227 ~~tG~~~~~i~----------------~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 227 PVTGKRLQTVK----------------LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTTCCEEEEEE----------------CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCceEEEEEE----------------CCCCCceEEEEeCCCCCEEEEEcC
Confidence 98777543221 123468999998 88888887765
No 292
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.08 E-value=3.9e-08 Score=117.66 Aligned_cols=238 Identities=14% Similarity=0.093 Sum_probs=155.1
Q ss_pred eCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec
Q psy9598 515 RGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593 (1915)
Q Consensus 515 ~gH~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl 593 (1915)
..+..-.-+..|+++ +.++++...++.|..||..++... .+ .+...+.+++++++ +.+++ +. ++.|.+||.
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~d----G~l~v-~~-~~~l~~~d~ 80 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQS----GGYVA-TI-GTKFCALNW 80 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTT----SSEEE-EE-TTEEEEEET
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCC----CCEEE-EE-CCeEEEEEC
Confidence 334445678899995 556667777899999999887653 33 24568999999984 35444 44 567999998
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC---------CeEEEEEecCCCCCceeEEeccCCC
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD---------HHVRVYKMDGVDSPLGILEVEEHSD 664 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D---------g~I~IwDl~~~~~~~~i~~l~~h~~ 664 (1915)
.++......... .......+..++++++|+++++.... ....||.+..... +..+..+..
T Consensus 81 ~~g~~~~~~~~~--------~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~---~~~~~~~~~ 149 (297)
T 3g4e_A 81 KEQSAVVLATVD--------NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH---VKKYFDQVD 149 (297)
T ss_dssp TTTEEEEEEECC--------TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC---EEEEEEEES
T ss_pred CCCcEEEEEecC--------CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC---EEEEeeccc
Confidence 776421111100 00112457899999999976654322 3345666643221 222333445
Q ss_pred CeeEEEEcCCCCEEE-EEeCCCcEEEEEc--cCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe
Q psy9598 665 KVDSIQWSHSHLRFV-SGSRDGTALIWYY--KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 741 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~-sgs~DG~I~IWDl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~ 741 (1915)
....++|+|++..|+ +.+.++.|.+|++ .++....... .............++++++|.+.++...
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~-----------~~~~~~~~~~p~g~~~d~~G~lwva~~~ 218 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRS-----------VYKLEKEEQIPDGMCIDAEGKLWVACYN 218 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEE-----------EEECCGGGCEEEEEEEBTTSCEEEEEET
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEE-----------EEECCCCCCCCCeeEECCCCCEEEEEcC
Confidence 578999999998664 5566789999987 3444211000 0001112345678999999976666655
Q ss_pred cCCeEEEEECCCCceEEEeeCCCCCeEEEEEc-cCCCCEEEEEe
Q psy9598 742 FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH-PFDSRVLLSAG 784 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~s-p~dg~~LaSgs 784 (1915)
.+.|.+||..+|+++..+..+...+++++|. | ++..|+.++
T Consensus 219 -~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 219 -GGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp -TTEEEEECTTTCCEEEEEECSSSBEEEEEEESG-GGCEEEEEE
T ss_pred -CCEEEEEcCCCceEEEEEECCCCCceEEEEeCC-CCCEEEEEc
Confidence 7889999999999999999887889999998 7 655554443
No 293
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.06 E-value=1.8e-08 Score=121.00 Aligned_cols=236 Identities=8% Similarity=-0.040 Sum_probs=152.7
Q ss_pred EecCCCCcEEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 471 VNLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 471 ~l~gH~~~V~~vafspdg~-~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
.+..+.......+|+++|+ +++++..++.|..|+. ++. +..+..+...+..++++++|+++++...++.|.+|+..
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3444556788999999998 6677778899999998 555 34555667789999999999977766666889999986
Q ss_pred CceEEEeecC----CCCeEEEEeccCccCCCcEEEE----EeC-------------CCeEEEEecccCccccceeccCcc
Q psy9598 550 LAPISVLVGH----QGIITGVNFCPLEVNGFNYLAS----TST-------------DGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 550 g~~~~~l~~h----~~~V~sl~fsp~~~~d~~~L~s----gs~-------------DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
+......... ...++++++.++ +.++++ |.. .+.|..||..++......
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~d----G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------ 185 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARD----GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------ 185 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTT----SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------
T ss_pred CCEEEEEeccCCCccCCCCCEEECCC----CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe------
Confidence 5543222111 134678999884 467765 332 245666776555321111
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEEeCC------CeEEEEEecCCCCCceeEE-eccCCCCeeEEEEcCCCCEEEEE
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGD------HHVRVYKMDGVDSPLGILE-VEEHSDKVDSIQWSHSHLRFVSG 681 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D------g~I~IwDl~~~~~~~~i~~-l~~h~~~V~sl~fspdg~~L~sg 681 (1915)
+......++|+|++..|+++... +.|.+|++.... ...... .....+...+|+++++|++. ++
T Consensus 186 --------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~ 255 (305)
T 3dr2_A 186 --------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SS 255 (305)
T ss_dssp --------EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-EC
T ss_pred --------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-Ee
Confidence 11346789999999988777665 789999985422 111111 11234456778999999844 44
Q ss_pred eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 682 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 682 s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
+.+| |.+|+........+. ....+.+++|++++..|++++. + .|..++
T Consensus 256 ~~~g-v~~~~~~g~~~~~~~------------------~~~~~~~~~f~~d~~~L~it~~-~-~l~~~~ 303 (305)
T 3dr2_A 256 SGTG-VCVFDSDGQLLGHIP------------------TPGTASNCTFDQAQQRLFITGG-P-CLWMLP 303 (305)
T ss_dssp CSSE-EEEECTTSCEEEEEE------------------CSSCCCEEEECTTSCEEEEEET-T-EEEEEE
T ss_pred cCCc-EEEECCCCCEEEEEE------------------CCCceeEEEEeCCCCEEEEEcC-C-eEEEEE
Confidence 4554 899987533211111 0113677999999998888875 4 444443
No 294
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.03 E-value=1.9e-08 Score=125.54 Aligned_cols=286 Identities=9% Similarity=-0.017 Sum_probs=183.4
Q ss_pred CCCCEEEEEeC-C----CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEe----------CCCeEEEEe
Q psy9598 528 NRNILLAAGTV-D----KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS----------TDGCIGFWK 592 (1915)
Q Consensus 528 pdg~~LaSgs~-D----gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs----------~DgtI~iWD 592 (1915)
+++..++++.. + +.|.++|+.+++.+..+..-..+ .++++|++ ++|+++. .++.|.++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDg----k~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDG----SFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTS----SCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCC----CEEEEEeccccccccCCCCCEEEEEE
Confidence 46666655544 2 69999999999999988755555 89999954 6666665 467999999
Q ss_pred cccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC--CCeEEEEEecCCCCCceeEEeccCCCCeeEEE
Q psy9598 593 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG--DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~--Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~ 670 (1915)
..+...+..+.......+. .......+.|+|+|++|+++.. ++.|.++|+.. ...+..+.-.. . ..
T Consensus 156 ~~t~~vv~~I~v~g~~r~~-----~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t---~kvv~~I~v~g--~--~~ 223 (426)
T 3c75_H 156 PVTFLPIADIELPDAPRFL-----VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG---KTFDRMLDVPD--C--YH 223 (426)
T ss_dssp TTTCCEEEEEEETTCCCCC-----BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT---TEEEEEEECCS--E--EE
T ss_pred CCCCcEEEEEECCCccccc-----cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC---CeEEEEEEcCC--c--ee
Confidence 9988765554432000000 0012346789999999998874 57899999843 33333333211 1 22
Q ss_pred EcCCC-CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy9598 671 WSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 749 (1915)
Q Consensus 671 fspdg-~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vw 749 (1915)
..|++ ..+++.+.||.+.+.++.+++...... .... .........+.|++++..++.... .+.|.+.
T Consensus 224 ~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~---~~~~--------v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~Vi 291 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSLARVDFADGETKVTNT---EVFH--------TEDELLINHPAFSLRSGRLVWPTY-TGKIFQA 291 (426)
T ss_dssp EEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---CCCS--------CTTSCBCSCCEECTTTCEEEEEBT-TSEEEEE
T ss_pred eccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---eeec--------cCCCceeeEeeecCCCCEEEEEeC-CCcEEEE
Confidence 33433 567777888888888875544321100 0000 000111123567889888877776 8899999
Q ss_pred ECCCCceE--EEeeC----------CCCCeEEEEEccCCCCEEEEEec----------CceEEEEECCCCccccceeeee
Q psy9598 750 DAFNGDLV--QVLKG----------HTNEVFVLESHPFDSRVLLSAGH----------DGLIIIWDILSSKQRGYKWFHN 807 (1915)
Q Consensus 750 D~~tg~~i--~~l~g----------H~~~V~sl~~sp~dg~~LaSgs~----------DG~I~IWdl~s~~~~~~~~~~~ 807 (1915)
|+...... ..+.- .......++++| ++..|+++.. ++.|.++|+.+.+. +..+.
T Consensus 292 D~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv--v~~I~- 367 (426)
T 3c75_H 292 DLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER--INKIE- 367 (426)
T ss_dssp EECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEE-
T ss_pred eccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccccccCCCCEEEEEECCCCeE--EEEEE-
Confidence 98654322 11110 011122368899 6665555432 35799999999888 66654
Q ss_pred eecCCCCcceEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCcccccC
Q psy9598 808 IVEGQGEGALFDGKWSPDGT-TCALTD-SYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 808 ~~~~~~~~~V~~vafSpdg~-~Lasg~-~dG~I~Iwdl~s~~~~~~l 852 (1915)
......+++|+|||+ +|+++. .++.|.|+|+.+++.+.++
T Consensus 368 -----vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 368 -----LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp -----EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred -----CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 113478899999999 888887 5899999999999887765
No 295
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.01 E-value=1.1e-08 Score=137.47 Aligned_cols=243 Identities=12% Similarity=0.036 Sum_probs=156.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEEE-----CCCcEEEEECCCCcEEEE-EeCCCCCEEEEEEeCCCCEEEEEeCCCc------
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGA-----DDLLIKLWRARDGKLLAT-LRGCSGEISDIAIDNRNILLAAGTVDKT------ 541 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs-----~Dg~I~IWd~~tg~~~~~-l~gH~~~I~~Lafspdg~~LaSgs~Dgt------ 541 (1915)
+|...|..++|||||++||-+. ....|+|||+.+|+.+.. +.+ .....++|+ ||+.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 5667889999999999998543 335799999999986553 221 113567999 9999999887744
Q ss_pred -------EEEEECCCCce--EEEe--ec-CCCCeEEEEeccCccCCCcEEEEEeC----CCeEEEEecccCcc-ccceec
Q psy9598 542 -------IRIWNLQTLAP--ISVL--VG-HQGIITGVNFCPLEVNGFNYLASTST----DGCIGFWKYKLDID-ISKTVF 604 (1915)
Q Consensus 542 -------IrVWDl~tg~~--~~~l--~~-h~~~V~sl~fsp~~~~d~~~L~sgs~----DgtI~iWDl~~~~~-~~~~~~ 604 (1915)
|++|++.++.. ...+ .. |...+.++.|+|+ +.+|+..+. .+.|.+||+.++.. ...+.
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD----g~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~- 277 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED----DRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ- 277 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTT----SCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCC----CCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-
Confidence 99999987653 2233 33 4556788999995 466644332 35889999877632 11111
Q ss_pred cCccccccccCCCCCceEEEEECCCCcEEE-EEeCC---CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q psy9598 605 HEPVMFNERIRPGNAHILCSSFSPGGLFLA-TGSGD---HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680 (1915)
Q Consensus 605 ~~~~~~~~~~~~~~~~V~~l~fspdg~~La-sgs~D---g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~s 680 (1915)
.+....... |+++|..|+ ++..+ +.|.++++.+.. ......+..|...+. .|++++.+|+.
T Consensus 278 -----------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 278 -----------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG-PAHWRDLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp -----------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC-GGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred -----------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC-ccccEEEecCCCCEE--EEEEECCEEEE
Confidence 122333333 556555544 44333 578888885432 222334556666665 88899988877
Q ss_pred EeCCC---cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC----CeEEEEECCC
Q psy9598 681 GSRDG---TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN----FQIKIWDAFN 753 (1915)
Q Consensus 681 gs~DG---~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D----g~I~vwD~~t 753 (1915)
+..++ .|.+|++..+....+. ......+..+.+++++..|+.+.+ + +.|+.||+.+
T Consensus 343 ~~~~~g~~~l~~~d~~g~~~~~l~----------------~p~~~~~~~~~~~~d~~~l~~~~s-s~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 343 EYMVDATARVEQFDYEGKRVREVA----------------LPGLGSVSGFNGKHDDPALYFGFE-NYAQPPTLYRFEPKS 405 (693)
T ss_dssp EEEETTEEEEEEECTTSCEEEEEC----------------CSSSSEEEECCCCTTCSCEEEEEE-CSSSCCEEEEECTTT
T ss_pred EEEECCeeEEEEEECCCCeeEEee----------------cCCCceEEeeecCCCCCEEEEEec-CCCCCCEEEEEECCC
Confidence 66544 6888888755422211 012235667778888887776665 4 7899999887
Q ss_pred Cce
Q psy9598 754 GDL 756 (1915)
Q Consensus 754 g~~ 756 (1915)
++.
T Consensus 406 g~~ 408 (693)
T 3iuj_A 406 GAI 408 (693)
T ss_dssp CCE
T ss_pred CeE
Confidence 764
No 296
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.00 E-value=4e-09 Score=129.24 Aligned_cols=270 Identities=9% Similarity=-0.017 Sum_probs=171.2
Q ss_pred CCEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceEEEe-------ecCCCCeEEEEeccCccCCCcEEEEEeC-----
Q psy9598 519 GEISDIAIDNRNILLAAGT--VDKTIRIWNLQTLAPISVL-------VGHQGIITGVNFCPLEVNGFNYLASTST----- 584 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs--~DgtIrVWDl~tg~~~~~l-------~~h~~~V~sl~fsp~~~~d~~~L~sgs~----- 584 (1915)
..+..|+++++|+++++.. .++.++||.+.++.. ..+ .+|...+.+|+|.+. +.++++.+.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~----g~L~v~D~g~~~~~ 91 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGN----GIVWMLDNGNQSKS 91 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSS----SEEEEEECHHHHTS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCC----CcEEEEcCCCCcCC
Confidence 6789999999999988864 234356666555543 222 134568999999984 355555443
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC-cEEEEEe---CCCeEEEEEecCCCCCceeEEec
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGS---GDHHVRVYKMDGVDSPLGILEVE 660 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasgs---~Dg~I~IwDl~~~~~~~~i~~l~ 660 (1915)
++.|.+||+.++..+..+.+.... ..+...+..+++++++ ..+++.. .++.|.+||+... .....+.
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g---~~~r~~~ 162 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPI------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG---LAARVLQ 162 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTT------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC---CEEEECT
T ss_pred CCeEEEEECCCCeEEEEEECChhh------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC---CEEEEec
Confidence 578999999887644444332111 1223456889999864 4445554 6789999998432 2333344
Q ss_pred cCCCCee-EEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEE
Q psy9598 661 EHSDKVD-SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITA 739 (1915)
Q Consensus 661 ~h~~~V~-sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~ 739 (1915)
+|..... ...+..+|..|.+++.+|.+..|. ..+..|+|+++|++|+++
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~------------------------------~~~~gia~s~dg~~ly~~ 212 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH------------------------------LGVNGIVLDAENEWLYLS 212 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCC------------------------------CCEEEEEECTTSCEEEEE
T ss_pred CCCcccccccceeECCEEEEeccCCCceecee------------------------------cccceeEeccCCCEEEEE
Confidence 4322111 133455677777778888776652 125679999999999988
Q ss_pred EecCCeEEEEECC---CCc-----eEE--EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeee
Q psy9598 740 INFNFQIKIWDAF---NGD-----LVQ--VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIV 809 (1915)
Q Consensus 740 s~~Dg~I~vwD~~---tg~-----~i~--~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~ 809 (1915)
......|..++.. .+. ... ...++.+....+++++ ++.++++...++.|.+||..+++. ..+.
T Consensus 213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~---~~~~--- 285 (343)
T 2qe8_A 213 PMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAY---KLLV--- 285 (343)
T ss_dssp ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEE---EEEE---
T ss_pred eCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCE---EEEE---
Confidence 7734466666532 111 000 1123444566789999 899999998999999999855543 1111
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy9598 810 EGQGEGALFDGKWSPDGTTCALTDSYGHLL 839 (1915)
Q Consensus 810 ~~~~~~~V~~vafSpdg~~Lasg~~dG~I~ 839 (1915)
.......+.+++|.++|.++++++..+.+.
T Consensus 286 ~~~~~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 286 TDEKLSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp ECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred ECCceecCCeeEECCCCcEEEEeCcccccc
Confidence 112235688999999998888776644443
No 297
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.97 E-value=9.8e-09 Score=126.37 Aligned_cols=179 Identities=8% Similarity=0.013 Sum_probs=131.2
Q ss_pred CeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc---eeccCccccccccCCCCCceEEEEECCCCcEEEEEeC
Q psy9598 562 IITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK---TVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG 638 (1915)
Q Consensus 562 ~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~---~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~ 638 (1915)
.++.+++++.. .+|++|+.++ +.+|++........ ..+. +. ....... |+.++| ++.+|+++ .
T Consensus 39 ~~nlLais~~~----gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~-~~----~~~~lp~-V~~l~f--d~~~L~v~-~ 104 (388)
T 1xip_A 39 SLQNLDISNSK----SLFVAASGSK-AVVGELQLLRDHITSDSTPLT-FK----WEKEIPD-VIFVCF--HGDQVLVS-T 104 (388)
T ss_dssp CCBCEEEETTT----TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC-CS----EEEECTT-EEEEEE--ETTEEEEE-E
T ss_pred cccEEEEcCCC----CEEEEeCCCE-EEEEEhhHhhhhhcccccccc-ce----EEeeCCC-eeEEEE--CCCEEEEE-c
Confidence 68899999854 8899999886 55598765431000 0011 10 1112335 999999 99999999 8
Q ss_pred CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 639 DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 639 Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
+|.|++||+.... .......|...|.++.+.+. .|++++.||.|.+||+..+....
T Consensus 105 ~~~l~v~dv~sl~---~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~------------------- 160 (388)
T 1xip_A 105 RNALYSLDLEELS---EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ------------------- 160 (388)
T ss_dssp SSEEEEEESSSTT---CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------------------
T ss_pred CCcEEEEEchhhh---ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------------------
Confidence 8999999995443 33345667778888887755 38899999999999998776321
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce--EEEe------e---CCCCCeEEEEEccCCCCEEEEE
Q psy9598 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL--VQVL------K---GHTNEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~--i~~l------~---gH~~~V~sl~~sp~dg~~LaSg 783 (1915)
....|+|++|||+| ++++.. ||.|++|+...+.+ ..++ . +|...|.+|.|.+ ++.+|++-
T Consensus 161 -~~~~Vs~v~WSpkG--~~vg~~-dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y 231 (388)
T 1xip_A 161 -LAQNVTSFDVTNSQ--LAVLLK-DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF 231 (388)
T ss_dssp -EEESEEEEEECSSE--EEEEET-TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred -ccCCceEEEEcCCc--eEEEEc-CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEE
Confidence 33579999999999 566766 99999999887775 5666 2 4788999999999 77777764
No 298
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.95 E-value=1.9e-08 Score=123.54 Aligned_cols=269 Identities=12% Similarity=-0.016 Sum_probs=169.5
Q ss_pred cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe----------CCCcEEEEECCCCceEEEeecC-------CC
Q psy9598 499 LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWNLQTLAPISVLVGH-------QG 561 (1915)
Q Consensus 499 ~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs----------~DgtIrVWDl~tg~~~~~l~~h-------~~ 561 (1915)
+|.++|..+++.+.++.....+ .++++||+++|+++. .+++|.+||+.+++.+..+..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999755556 799999999888886 3689999999999999998643 12
Q ss_pred CeEEEEeccCccCCCcEEEEEeC--CCeEEE--EecccCccccceeccCccccccccCCCCCceEEEEECCCC-cEEEEE
Q psy9598 562 IITGVNFCPLEVNGFNYLASTST--DGCIGF--WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATG 636 (1915)
Q Consensus 562 ~V~sl~fsp~~~~d~~~L~sgs~--DgtI~i--WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg-~~Lasg 636 (1915)
....++|+|+ +++|+++.. +..|.+ +|+.+ +..+... + |+.+.|+| ..+++.
T Consensus 125 ~P~~ia~SpD----Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-----------~-----~~~~~p~g~~~~~~~ 181 (368)
T 1mda_H 125 RVHIIGNCAS----SACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-----------S-----CFHIHPGAAATHYLG 181 (368)
T ss_dssp CTTSEEECTT----SSCEEEEECSSSCEEEEEETTTEE---EEEEECS-----------S-----CCCCEEEETTEEECC
T ss_pred CcceEEEcCC----CCEEEEEccCCCCeEEEEEEchhh---ceEEECC-----------C-----ceEEccCCCeEEEEE
Confidence 4568999994 477887764 467888 98876 2222111 0 01122332 234455
Q ss_pred eCCCeEEEEEecCCCCC-ceeE-----EeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee-ecccccCC
Q psy9598 637 SGDHHVRVYKMDGVDSP-LGIL-----EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR-LDMNTCLP 709 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~-~~i~-----~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~-~~~~~~~~ 709 (1915)
+.||.+.+.++...... ..+. .+.-...+. + ++++..++..+. +.|.+.|+.+....... .....
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~--- 253 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNE--- 253 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSC---
T ss_pred cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecc---
Confidence 56777767776320000 0000 011112333 3 555666665556 99999998654311110 00000
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEe---c-----CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCC-EE
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAIN---F-----NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VL 780 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---~-----Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~-~L 780 (1915)
.. .............++|++++..++++.. . ++.+.++|+.+++.+..+.... ...+|+|+| +++ ++
T Consensus 254 ~~--~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~-Dg~~l~ 329 (368)
T 1mda_H 254 SG--RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQ-DGASDN 329 (368)
T ss_dssp TH--HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECC-SSSCEE
T ss_pred cc--ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECC-CCCEEE
Confidence 00 0000001111222689999999887643 1 1346699999999999887544 578999999 776 67
Q ss_pred EEEe-cCceEEEEECCCCccccceeee
Q psy9598 781 LSAG-HDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 781 aSgs-~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
++.. .++.|.|+|+.+++. +..+.
T Consensus 330 va~~~~~~~VsVID~~t~kv--v~~I~ 354 (368)
T 1mda_H 330 YANSAGTEVLDIYDAASDQD--QSSVE 354 (368)
T ss_dssp EEEETTTTEEEEEESSSCEE--EEECC
T ss_pred EEccCCCCeEEEEECCCCcE--EEEEE
Confidence 7777 599999999999887 55544
No 299
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.94 E-value=3.8e-07 Score=110.70 Aligned_cols=227 Identities=10% Similarity=-0.082 Sum_probs=146.4
Q ss_pred CcEEEEEEcCC-CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 477 SAVFCVLFDKL-GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 477 ~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
.-..+++|+|+ +.+++++..++.|.+|+..++... .+. +...|.+++|+++|.++++. .+ .|.+||..++.....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 34567899997 456667667889999999887653 333 34679999999999877764 44 499999988875433
Q ss_pred eec---C-CCCeEEEEeccCccCCCcEEEEEeCC----CeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 556 LVG---H-QGIITGVNFCPLEVNGFNYLASTSTD----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 556 l~~---h-~~~V~sl~fsp~~~~d~~~L~sgs~D----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
... + ...+++++++|. +.++++...+ +...||.+.++.. ..+. .+......++|+
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~----G~l~v~~~~~~~~~~~~~l~~~~~g~~-~~~~------------~~~~~~~~i~~s 187 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPS----GALWIGTMGRKAETGAGSIYHVAKGKV-TKLF------------ADISIPNSICFS 187 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTT----SCEEEEEEETTCCTTCEEEEEEETTEE-EEEE------------EEESSEEEEEEC
T ss_pred eeCCCCCCCCCCCCEEECCC----CCEEEEeCCCcCCCCceEEEEEeCCcE-EEee------------CCCcccCCeEEc
Confidence 221 1 235889999984 3555544321 2234444433321 1110 011346789999
Q ss_pred CCCcEEEEE-eCCCeEEEEEec--CC-CC--CceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 628 PGGLFLATG-SGDHHVRVYKMD--GV-DS--PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 628 pdg~~Lasg-s~Dg~I~IwDl~--~~-~~--~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
++|+.|+.+ +.++.|.+|++. +. .. ...+..+......+.++++.++|.++++...++.|.+|+.. ++.....
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i 266 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARY 266 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEE
Confidence 999876554 557899999984 21 11 11222333345567899999999887777777899999883 4422211
Q ss_pred ecccccCCCCccccccccccccEEEEEEC-CCCCEEEEEEe
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDRWVITAIN 741 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~s-pdg~~L~t~s~ 741 (1915)
......+++++|+ +++..|++++.
T Consensus 267 ----------------~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 267 ----------------EVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ----------------ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ----------------ECCCCCcEEEEEecCCCCEEEEEec
Confidence 0123458999998 88888877765
No 300
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.94 E-value=3.5e-08 Score=132.72 Aligned_cols=246 Identities=11% Similarity=0.115 Sum_probs=156.0
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe-----CCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC----
Q psy9598 516 GCSGEISDIAIDNRNILLAAGT-----VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG---- 586 (1915)
Q Consensus 516 gH~~~I~~Lafspdg~~LaSgs-----~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg---- 586 (1915)
+|...|..++|||||++||-+. ...+|+|||+.+|+.+.... +.....+++|+ ++ +.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg----~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GN----EGFFYSSYDKPDGS 199 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TT----TEEEEEESSCCC--
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CC----CEEEEEEecCcccc
Confidence 4556788999999999888433 33579999999998654311 11113567788 65 6777777664
Q ss_pred ---------eEEEEecccCccccceeccCccccccccCC-CCCceEEEEECCCCcEEEEEeC----CCeEEEEEecCCCC
Q psy9598 587 ---------CIGFWKYKLDIDISKTVFHEPVMFNERIRP-GNAHILCSSFSPGGLFLATGSG----DHHVRVYKMDGVDS 652 (1915)
Q Consensus 587 ---------tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~fspdg~~Lasgs~----Dg~I~IwDl~~~~~ 652 (1915)
.|.+|++.++.......+..+ . +...+..+.|+|+|++|+.... ...|++||+.+...
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~--------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAI--------PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCS--------GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecC--------CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 388999877643222222210 1 2234678999999998865443 34889999854321
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEe-CC---CcEEEEEccCCce---EEeeecccccCCCCccccccccccccEE
Q psy9598 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RD---GTALIWYYKCSQW---RFIRLDMNTCLPHTKETSDETNKKIKVT 725 (1915)
Q Consensus 653 ~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~D---G~I~IWDl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 725 (1915)
....+..+...+... |+++|..|+..+ .+ +.|.+|++.++.. ..+ ..+...+.
T Consensus 272 --~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l-----------------~~~~~~~~ 331 (693)
T 3iuj_A 272 --PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL-----------------IPERQQVL 331 (693)
T ss_dssp --CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE-----------------ECCCSSCE
T ss_pred --ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEE-----------------ecCCCCEE
Confidence 234455566666655 666666555444 33 5788888876542 111 11222233
Q ss_pred EEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEee-CCCCCeEEEEEccCCCCEEEEEecC----ceEEEEECCCCc
Q psy9598 726 MVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLK-GHTNEVFVLESHPFDSRVLLSAGHD----GLIIIWDILSSK 798 (1915)
Q Consensus 726 ~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~-gH~~~V~sl~~sp~dg~~LaSgs~D----G~I~IWdl~s~~ 798 (1915)
.|++++.+|+.+...++ .|++|++..+ ....+. .+.+.+..+.+++ ++..|+....+ ++|+.||+.+++
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCC-CCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 78889999888776455 6889998754 444443 3455677888888 55544443333 789999998776
Q ss_pred c
Q psy9598 799 Q 799 (1915)
Q Consensus 799 ~ 799 (1915)
.
T Consensus 408 ~ 408 (693)
T 3iuj_A 408 I 408 (693)
T ss_dssp E
T ss_pred E
Confidence 4
No 301
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.94 E-value=2.4e-08 Score=122.62 Aligned_cols=268 Identities=6% Similarity=-0.131 Sum_probs=171.2
Q ss_pred CCceeeeEEecCCCCcEEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCcEEEEEeCC-------CCCEEEEE
Q psy9598 463 YSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGA----------DDLLIKLWRARDGKLLATLRGC-------SGEISDIA 525 (1915)
Q Consensus 463 ~~~~~~~~~l~gH~~~V~~vafspdg~~LaTGs----------~Dg~I~IWd~~tg~~~~~l~gH-------~~~I~~La 525 (1915)
....+...++..-..+ .++|+|||++|+++. .++.|.+||+.+++.+.++..+ ......++
T Consensus 53 ~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 53 AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence 4445555555433345 799999999999886 3679999999999999998643 12356799
Q ss_pred EeCCCCEEEEEeC--CCcEEE--EECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc-----C
Q psy9598 526 IDNRNILLAAGTV--DKTIRI--WNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-----D 596 (1915)
Q Consensus 526 fspdg~~LaSgs~--DgtIrV--WDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~-----~ 596 (1915)
|+|||++|+++.. +..|.| ||+.+ +..+..- + ++.+.|. +...+++.+.||.+.+.++.+ +
T Consensus 131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~---~~~~~p~---g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 131 NCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S---CFHIHPG---AAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S---CCCCEEE---ETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred EcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C---ceEEccC---CCeEEEEEcCCCCEEEEECccccccCC
Confidence 9999999998874 467888 99877 4444321 1 1223443 235667778899998888876 3
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc----------CCCCe
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE----------HSDKV 666 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~----------h~~~V 666 (1915)
....... ..+..+..+. . ++++..++..+. +.|.+.|+.+.. ...+..+.- +....
T Consensus 201 ~v~~~~t--------~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~-~~v~~~~~~~~~~~~~~~~~p~g~ 266 (368)
T 1mda_H 201 IVGAQCT--------GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGF 266 (368)
T ss_dssp ECCCCSC--------TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSS
T ss_pred eEEEEee--------eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCc-ceEEEEEEeccccccccccccCcc
Confidence 2211000 0011122333 3 555555555555 899999984311 111111100 11112
Q ss_pred eEEEEcCCCCEEEEEeC---------CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEE
Q psy9598 667 DSIQWSHSHLRFVSGSR---------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 737 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~---------DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~ 737 (1915)
..++|++++.+|+++.. ++.+.+||+.+.+.+... ........++|+++|++++
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i-----------------~vg~~p~gi~~s~Dg~~l~ 329 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-----------------SNGHDSDAIIAAQDGASDN 329 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-----------------EEEEEECEEEECCSSSCEE
T ss_pred eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE-----------------ECCCCcceEEECCCCCEEE
Confidence 22689999998886543 235669999988744311 0122578899999998766
Q ss_pred EEEe-cCCeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 738 TAIN-FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 738 t~s~-~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
++.. .++.|.|+|+.+++.+.++..+.. ...|++++
T Consensus 330 va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 330 YANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred EEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 6665 489999999999999999986554 34566554
No 302
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.93 E-value=9.9e-07 Score=109.00 Aligned_cols=266 Identities=9% Similarity=0.018 Sum_probs=166.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCe---
Q psy9598 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGII--- 563 (1915)
Q Consensus 487 dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V--- 563 (1915)
++..|++++.++.|..+|..+|+.+..+...........+. +..|+.++.++.|..+|..+|+.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 36688889999999999999999988776543322222222 3478888889999999999999888776432211
Q ss_pred --EEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccc--cccC-CCCCceEEEEECCCCcEEEEEeC
Q psy9598 564 --TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN--ERIR-PGNAHILCSSFSPGGLFLATGSG 638 (1915)
Q Consensus 564 --~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~--~~~~-~~~~~V~~l~fspdg~~Lasgs~ 638 (1915)
...... +..++.++.+|.|..+|..++..+.......+.... ..+. .....+ + .+..|++++.
T Consensus 180 ~~~~~~~~------~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----~--~~~~v~~~~~ 247 (376)
T 3q7m_A 180 GESAPTTA------FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----V--VNGVVFALAY 247 (376)
T ss_dssp CCCCCEEE------TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE----E--ETTEEEEECT
T ss_pred CCCCcEEE------CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE----E--ECCEEEEEec
Confidence 111121 257888889999999999988765544433111000 0000 000111 1 2456777888
Q ss_pred CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 639 DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 639 Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
+|.|..+|..+. ..+.... .....++.. ++..|++++.+|.|..+|..+++..........
T Consensus 248 ~g~l~~~d~~tG---~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~------------ 308 (376)
T 3q7m_A 248 NGNLTALDLRSG---QIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH------------ 308 (376)
T ss_dssp TSCEEEEETTTC---CEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT------------
T ss_pred CcEEEEEECCCC---cEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC------------
Confidence 999999998432 2333222 223444444 366888888999999999999885432210000
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEE
Q psy9598 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 793 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWd 793 (1915)
..+..... .+..|++++. +|.|.+||..+|+.+..+......+.+.... .+..|+.++.+|.|+.|+
T Consensus 309 ---~~~~~~~~--~~~~l~v~~~-~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 309 ---RLLTSPVL--YNGNLVVGDS-EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ---SCCCCCEE--ETTEEEEECT-TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred ---CcccCCEE--ECCEEEEEeC-CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 00111111 2467777777 8999999999999988877644433322111 245688889999999987
No 303
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.92 E-value=7.1e-07 Score=108.30 Aligned_cols=231 Identities=10% Similarity=-0.025 Sum_probs=147.0
Q ss_pred CEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 520 EISDIAIDNR-NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 520 ~I~~Lafspd-g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
...+++|+++ +.+++++..++.|.+||..++... .+. +...|.+++|.++ +.++++ +.+ .|.+||..++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~d----g~l~v~-~~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISD----SKQLIA-SDD-GLFLRDTATGVL 121 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEET----TEEEEE-ETT-EEEEEETTTCCE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCC----CeEEEE-ECC-CEEEEECCCCcE
Confidence 3467889997 456666667889999999887643 232 3467999999984 355554 444 489999877643
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCC----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~D----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd 674 (1915)
.. + .... .......+.+++++++|+++++...+ +...||.++ .. .+..+..+......++|+++
T Consensus 122 ~~-~-~~~~------~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g---~~~~~~~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 122 TL-H-AELE------SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG---KVTKLFADISIPNSICFSPD 189 (326)
T ss_dssp EE-E-ECSS------TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT---EEEEEEEEESSEEEEEECTT
T ss_pred EE-E-eeCC------CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC---cEEEeeCCCcccCCeEEcCC
Confidence 11 1 1100 00112468899999999876654421 234455553 12 12222233345789999999
Q ss_pred CCEEEEE-eCCCcEEEEEcc--CC-ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy9598 675 HLRFVSG-SRDGTALIWYYK--CS-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 750 (1915)
Q Consensus 675 g~~L~sg-s~DG~I~IWDl~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD 750 (1915)
|+.|+.+ +.++.|.+|++. ++ .... ................++++++|.++++... ++.|.+||
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~-~~~v~~~d 257 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------AEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-EGAVDRYD 257 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------CEEEEECTTSSSEEEEEEECTTSCEEEEEET-TTEEEEEC
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccC-----------ceEEEECCCCCCCCCeeEECCCCCEEEEEeC-CCEEEEEC
Confidence 9876554 567899999985 44 2100 0000000112234578999999987766655 78999999
Q ss_pred CCCCceEEEeeCCCCCeEEEEEc-cCCCCEEEEEe
Q psy9598 751 AFNGDLVQVLKGHTNEVFVLESH-PFDSRVLLSAG 784 (1915)
Q Consensus 751 ~~tg~~i~~l~gH~~~V~sl~~s-p~dg~~LaSgs 784 (1915)
. +++.+..+..+...+++++|+ + ++..|+.++
T Consensus 258 ~-~g~~~~~i~~~~~~~~~~af~g~-d~~~L~vt~ 290 (326)
T 2ghs_A 258 T-DGNHIARYEVPGKQTTCPAFIGP-DASRLLVTS 290 (326)
T ss_dssp T-TCCEEEEEECSCSBEEEEEEEST-TSCEEEEEE
T ss_pred C-CCCEEEEEECCCCCcEEEEEecC-CCCEEEEEe
Confidence 8 688888888777789999998 7 666554443
No 304
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.91 E-value=1.5e-07 Score=112.97 Aligned_cols=241 Identities=12% Similarity=0.029 Sum_probs=154.8
Q ss_pred EEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEE
Q psy9598 511 LATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 589 (1915)
Q Consensus 511 ~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~ 589 (1915)
+..+..+.......+|+++|+ +++++..++.|..|+. ++. +..+..+...+.++++.+. ++++++...++.|.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~d----G~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQ----QRLVHCEHGRRAIT 110 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTT----SCEEEEETTTTEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCC----CCEEEEECCCCEEE
Confidence 334444556678899999998 6677778899999998 454 4555566778999999984 46666666668899
Q ss_pred EEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEE----EeC-------------CCeEEEEEecCCCC
Q psy9598 590 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT----GSG-------------DHHVRVYKMDGVDS 652 (1915)
Q Consensus 590 iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Las----gs~-------------Dg~I~IwDl~~~~~ 652 (1915)
+|+.. +.. ..+... . . ......+.+++++++|.+.++ |.. .+.|..||..+. .
T Consensus 111 ~~~~~-g~~-~~~~~~--~--~---~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~ 180 (305)
T 3dr2_A 111 RSDAD-GQA-HLLVGR--Y--A---GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-P 180 (305)
T ss_dssp EECTT-SCE-EEEECE--E--T---TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-C
T ss_pred EECCC-CCE-EEEEec--c--C---CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-c
Confidence 99875 321 111100 0 0 001134677999999998876 432 245566655221 1
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCEEEEEeCC------CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEE
Q psy9598 653 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726 (1915)
Q Consensus 653 ~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D------G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 726 (1915)
... +. .......++|+|++..|+++... +.|.+|++.......... .... .......
T Consensus 181 ~~~---~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~-~~~~------------~~~~pdg 243 (305)
T 3dr2_A 181 LQR---MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH-FASV------------PDGLPDG 243 (305)
T ss_dssp CEE---EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEE-EECC------------SSSCCCS
T ss_pred EEE---Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeE-EEEC------------CCCCCCe
Confidence 111 12 33457889999999988777665 789999987654111000 0000 1122345
Q ss_pred EEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEE
Q psy9598 727 VAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLII 790 (1915)
Q Consensus 727 va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~ 790 (1915)
++++++|.+.++ .. + .|.+|+. .++.+..+..+. .+.+++|++ +++.|+.++.++..+
T Consensus 244 i~~d~~G~lwv~-~~-~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 244 FCVDRGGWLWSS-SG-T-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPCLWM 301 (305)
T ss_dssp EEECTTSCEEEC-CS-S-EEEEECT-TSCEEEEEECSS-CCCEEEECT-TSCEEEEEETTEEEE
T ss_pred EEECCCCCEEEe-cC-C-cEEEECC-CCCEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCeEEE
Confidence 889999995444 33 4 4999998 678888887665 588999997 787777777665433
No 305
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.90 E-value=8.8e-06 Score=111.19 Aligned_cols=333 Identities=11% Similarity=0.028 Sum_probs=209.7
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeC-------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG-------CSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~g-------H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
+...|.+|..+++|.+. .|+.++-|.+|+..++........ ....|.+|...++|.+.+ |+.+ -|.+|+.
T Consensus 213 ~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp -CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred CCCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence 35679999998887654 455554588999887765443222 135699999998887665 4445 4889998
Q ss_pred CCCceEEEeec-------CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 548 QTLAPISVLVG-------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 548 ~tg~~~~~l~~-------h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
.++........ ....|.+|...+. ..|..|+.++-|.+|+..+.... ... ..+. . ..-....
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-----g~lWigt~~~Gl~~~~~~~~~~~-~~~-~~~~--~--~~l~~~~ 358 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQ-----GGMWLGTYFGGLNYYHPIRNRFK-NIR-NIPY--K--NSLSDNV 358 (795)
T ss_dssp TTTEEEEECCCTTSTTSCSSSCEEEEEECTT-----SCEEEEESSSCEEEECGGGGSSE-EEC-CCTT--S--SSCSCSS
T ss_pred CCCeEEEEecCCCCCCCCCCCcEEEEEEeCC-----cCEEEEECCCCeEEeCCCcccce-EEc-CCCC--C--CCCCCCe
Confidence 87765443221 2356888888763 35677777777888887654321 110 0000 0 0112356
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe------ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV------EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l------~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
|.++....+|. |.+|+.++-|..|+..... ....... .-....|.+++..++|..|..|+.++-|.+||..+
T Consensus 359 V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 359 VSCIVEDKDKN-LWIGTNDGGLNLYNPITQR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp EEEEEECTTSC-EEEEESSSCEEEECTTTCC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred eEEEEECCCCC-EEEEECCCCeEEEcCCCCc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 99999998886 5567777778888863211 1111000 01246799999888887677788878899999988
Q ss_pred CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC------CCCCeE
Q psy9598 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG------HTNEVF 768 (1915)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g------H~~~V~ 768 (1915)
++........ .......|.++..+++|.+.+.+ . +-|.+||..++........ +...|.
T Consensus 437 ~~~~~~~~~~------------~~l~~~~v~~i~~d~~g~lwigt-~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 437 GQVENFNQRN------------SQLVNENVYAILPDGEGNLWLGT-L--SALVRFNPEQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp CCEEEECTTT------------SCCSCSCEEEEEECSSSCEEEEE-S--SCEEEEETTTTEEEECCBCTTCCBCCCCCEE
T ss_pred CcEEEeecCC------------CCcCCCeeEEEEECCCCCEEEEe-c--CceeEEeCCCCeEEEccccccccccCCceEE
Confidence 7754432100 00134578999999988866654 3 3488899887765443221 235789
Q ss_pred EEEEccCCCCEEEEEecCceEEEEECCCCccccceeeee--eecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 769 VLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN--IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 769 sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~--~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
++...+ ++.+.+.. . +-|.+|+..++.. .+.. ...+.....|.++...++|.+.+++.. -|..|+..++
T Consensus 502 ~i~~d~-~g~lWigt-~-~Gl~~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~~~ 572 (795)
T 4a2l_A 502 TLFRDS-HKRLWIGG-E-EGLSVFKQEGLDI----QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEKDK 572 (795)
T ss_dssp EEEECT-TCCEEEEE-S-SCEEEEEEETTEE----EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETTTT
T ss_pred EEEECC-CCCEEEEe-C-CceEEEeCCCCeE----EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCCCC
Confidence 998887 77765544 4 5688888866432 1110 011123357899999999987665543 5788887655
Q ss_pred c
Q psy9598 847 K 847 (1915)
Q Consensus 847 ~ 847 (1915)
.
T Consensus 573 ~ 573 (795)
T 4a2l_A 573 Q 573 (795)
T ss_dssp E
T ss_pred c
Confidence 3
No 306
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.85 E-value=1.4e-08 Score=122.60 Aligned_cols=302 Identities=12% Similarity=0.025 Sum_probs=186.2
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCC
Q psy9598 481 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ 560 (1915)
Q Consensus 481 ~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~ 560 (1915)
+++++.+|. |++|+.++.|..|| .+++.+..+..+...+.++.+..+|.+ ..|+.+ |..||. ++..+..+..+.
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTI-YFGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEE-CCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcE-EEecCc--EEEECC-CCcEEEEEECCC
Confidence 345555564 56677888999999 899887766655555677888777754 444444 888886 565543333222
Q ss_pred CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC
Q psy9598 561 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH 640 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg 640 (1915)
..+....+. ...|+.++.++.|..+|.. +......... ...+.++.+.++|. |.+|+.++
T Consensus 98 ~~~~~~~~~------~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~------------~~~~~~~~~~~~g~-l~vgt~~~ 157 (330)
T 3hxj_A 98 AIVSDFTIF------EDILYVTSMDGHLYAINTD-GTEKWRFKTK------------KAIYATPIVSEDGT-IYVGSNDN 157 (330)
T ss_dssp ---CCEEEE------TTEEEEECTTSEEEEECTT-SCEEEEEECS------------SCCCSCCEECTTSC-EEEECTTS
T ss_pred CcccCceEE------CCEEEEEecCCEEEEEcCC-CCEEEEEcCC------------CceeeeeEEcCCCE-EEEEcCCC
Confidence 222233332 2578888889999999987 5432222211 12344556666775 66677889
Q ss_pred eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccc
Q psy9598 641 HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720 (1915)
Q Consensus 641 ~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1915)
.|..||.. ...+..+......+.++.+.+++.+++ ++ +.|..|| .++....... ..
T Consensus 158 ~l~~~d~~----g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~----------------~~ 213 (330)
T 3hxj_A 158 YLYAINPD----GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFY----------------AG 213 (330)
T ss_dssp EEEEECTT----SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEEC----------------CS
T ss_pred EEEEECCC----CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEc----------------cC
Confidence 99999873 233334444455677788877777544 44 8888998 5554332111 01
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccc
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR 800 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~ 800 (1915)
...+.+++++++|...+ ++. ++.|..+|. ++..+..+......+.++.+.+ ++ .|..++.+|.|..+|. +++.
T Consensus 214 ~~~~~~~~~~~~g~l~v-~t~-~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~- 286 (330)
T 3hxj_A 214 YWTVTRPAISEDGTIYV-TSL-DGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTE- 286 (330)
T ss_dssp SCCCSCCEECTTSCEEE-EET-TTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCE-
T ss_pred CcceeceEECCCCeEEE-EcC-CCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcE-
Confidence 13456677788776544 444 678888874 6777766665544444555554 44 5667888889999996 5554
Q ss_pred cceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 801 GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 801 ~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
+..+. .....+.++....+|. |.+++.+|.+++......
T Consensus 287 -~~~~~-----~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 287 -KWNFE-----TGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp -EEEEE-----CSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred -EEEEE-----cCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 33332 1234566677777776 555888899998876543
No 307
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=1.3e-07 Score=126.48 Aligned_cols=265 Identities=10% Similarity=-0.017 Sum_probs=165.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCC-C----CCEEEEEEeCCCCEEEEEeC------CCcEEEEECCCCceEEE
Q psy9598 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGC-S----GEISDIAIDNRNILLAAGTV------DKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 487 dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH-~----~~I~~Lafspdg~~LaSgs~------DgtIrVWDl~tg~~~~~ 555 (1915)
++..|++++.|+.|..+|..+|+.+..+..+ . ..+.+--.-.++ .|+.++. ++.|+.||..+|+.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3678999999999999999999999988765 2 122211111234 4555543 68999999999999887
Q ss_pred eecCCCC--------------------------------eEEEEeccCccCCCcEEEEEeCCC-----------------
Q psy9598 556 LVGHQGI--------------------------------ITGVNFCPLEVNGFNYLASTSTDG----------------- 586 (1915)
Q Consensus 556 l~~h~~~--------------------------------V~sl~fsp~~~~d~~~L~sgs~Dg----------------- 586 (1915)
+...... ...+++.|. +.+|+.++.++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~----~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE----LNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT----TTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC----CCEEEEECCCCccccCCCCCccCCCCee
Confidence 7543211 124566663 36777777664
Q ss_pred --eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC---cEEEEEeCCCeEEEEEecCCCCCceeEEecc
Q psy9598 587 --CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG---LFLATGSGDHHVRVYKMDGVDSPLGILEVEE 661 (1915)
Q Consensus 587 --tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg---~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~ 661 (1915)
+|..+|..++.............. .... ......+....+| ..|++++.+|.|+++|..+.. .+..+..
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~w--d~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~ 355 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNW--DYTS-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNF 355 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCS--CCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEES
T ss_pred eEEEEEEECCCCCEEEEEecCCCccc--cccc-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---Eeccccc
Confidence 599999999876655443211000 0000 1222333444477 689999999999999984332 2222111
Q ss_pred C-----------CCCe------------------------eEEEEcCCCCEEEEEeCC----------------------
Q psy9598 662 H-----------SDKV------------------------DSIQWSHSHLRFVSGSRD---------------------- 684 (1915)
Q Consensus 662 h-----------~~~V------------------------~sl~fspdg~~L~sgs~D---------------------- 684 (1915)
. ...+ ..++|+|++.+|++...+
T Consensus 356 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~ 435 (677)
T 1kb0_A 356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ 435 (677)
T ss_dssp SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccc
Confidence 0 0000 257889988888776542
Q ss_pred ---------------------CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 685 ---------------------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 685 ---------------------G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
|.|..||+.+++.+..... ...+....+...+..+++++. |
T Consensus 436 ~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-----------------~~~~~~g~~~~~g~~v~~g~~-d 497 (677)
T 1kb0_A 436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-----------------VSPWNGGTLTTAGNVVFQGTA-D 497 (677)
T ss_dssp GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-----------------SSSCCCCEEEETTTEEEEECT-T
T ss_pred cccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-----------------CCCCcCcceEeCCCEEEEECC-C
Confidence 7789999988875432210 011222334556778888866 9
Q ss_pred CeEEEEECCCCceEEEeeCCC-CCeEEEEEccCCCCEEE
Q psy9598 744 FQIKIWDAFNGDLVQVLKGHT-NEVFVLESHPFDSRVLL 781 (1915)
Q Consensus 744 g~I~vwD~~tg~~i~~l~gH~-~~V~sl~~sp~dg~~La 781 (1915)
|.|++||..+|+.+..+.... ....-+.|.. +++.++
T Consensus 498 g~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~-~G~~~v 535 (677)
T 1kb0_A 498 GRLVAYHAATGEKLWEAPTGTGVVAAPSTYMV-DGRQYV 535 (677)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEE-TTEEEE
T ss_pred CcEEEEECCCCceeeeeeCCCCcccCCEEEEe-CCEEEE
Confidence 999999999999999987443 2223344555 555433
No 308
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.84 E-value=3e-07 Score=123.00 Aligned_cols=302 Identities=12% Similarity=0.052 Sum_probs=183.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEeecCCCC----------e-EEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI----------I-TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~----------V-~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
+..|++++.++.|..+|..+|+.+..+..+... + ..+++ .+..|++++.|+.|..||..+++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~v~v~~~dg~l~AlDa~TG~~ 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV------WKGKVYVGVLDGRLEAIDAKTGQR 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE------ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE------ECCEEEEEccCCEEEEEECCCCCE
Confidence 456777788899999999999999887643321 0 11122 236788899999999999999987
Q ss_pred ccceecc-CccccccccCCCCCceEEEEECCCCcEEEEEe------CCCeEEEEEecCCCCCceeEEec-----------
Q psy9598 599 ISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGS------GDHHVRVYKMDGVDSPLGILEVE----------- 660 (1915)
Q Consensus 599 ~~~~~~~-~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs------~Dg~I~IwDl~~~~~~~~i~~l~----------- 660 (1915)
+...... .... ........+. .++ .+++++ .+|.|..||..+. ..+..+.
T Consensus 144 ~W~~~~~~~~~~---~~~~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG---~~~W~~~~~~~~p~~~~~ 211 (689)
T 1yiq_A 144 AWSVDTRADHKR---SYTITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDAETG---KEAWRFYTVPGDPKLPPE 211 (689)
T ss_dssp EEEEECCSCTTS---CCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTC---CEEEEEESSCCCTTSCCC
T ss_pred eeeecCcCCCCC---CccccCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEECCCC---cEEEEecccCCCcccccc
Confidence 6555432 1000 0000001111 144 344443 3688999988433 2222221
Q ss_pred --------------------cCCCCeeEEEEcCCCCEEEEEeCCCc-------------------EEEEEccCCceEEee
Q psy9598 661 --------------------EHSDKVDSIQWSHSHLRFVSGSRDGT-------------------ALIWYYKCSQWRFIR 701 (1915)
Q Consensus 661 --------------------~h~~~V~sl~fspdg~~L~sgs~DG~-------------------I~IWDl~~~~~~~~~ 701 (1915)
++......+++++++.+|+.++.++. |..||..+++.+...
T Consensus 212 ~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~ 291 (689)
T 1yiq_A 212 GKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY 291 (689)
T ss_dssp SHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred cccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee
Confidence 11111235788898889999988864 999999999865433
Q ss_pred ecccccCCCCccccccccccccEEEEEECCCCC---EEEEEEecCCeEEEEECCCCceEEEeeCCC-CC-----------
Q psy9598 702 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHT-NE----------- 766 (1915)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~---~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~-~~----------- 766 (1915)
...... .... .....+....+..+|. .|+.++. +|.|+++|..+|+++....... ..
T Consensus 292 ~~~~~d------~wd~-~~~~~~~l~d~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~p 363 (689)
T 1yiq_A 292 QTTPGD------AWDY-TATQHMILAELPIDGKPRKVLMQAPK-NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRP 363 (689)
T ss_dssp ESSTTC------CSCC-CCCSCEEEEEEEETTEEEEEEEECCT-TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEE
T ss_pred ecCCcc------cccc-cCCCCcEEEeeccCCcEEEEEEEECC-CCeEEEEECCCCCEeccccccccccccccCccCCCc
Confidence 211000 0000 0111122222223454 5666665 9999999999999885432110 00
Q ss_pred ---------------------------eEEEEEccCCCCEEEEEec----------------------------------
Q psy9598 767 ---------------------------VFVLESHPFDSRVLLSAGH---------------------------------- 785 (1915)
Q Consensus 767 ---------------------------V~sl~~sp~dg~~LaSgs~---------------------------------- 785 (1915)
-..++|+| +..+|+++..
T Consensus 364 i~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 442 (689)
T 1yiq_A 364 ILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEG 442 (689)
T ss_dssp EECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSS
T ss_pred ccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcc
Confidence 01267788 5566665422
Q ss_pred -----------CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC-
Q psy9598 786 -----------DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP- 853 (1915)
Q Consensus 786 -----------DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~- 853 (1915)
+|.|..||+.+++. +..+.. ...+....++..|.++++++.||.|+.||..+|+.+..+.
T Consensus 443 ~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~------~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 443 AEGLLEMAKSWSGKLIAWDPVKQQA--AWEVPY------VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTTEE--EEEEEE------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccCCCCCCCcceeEEEEECCCCCe--EeEccC------CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 48899999999987 444431 1223334566688899999999999999999998875442
Q ss_pred ------CceeecCCCCeee
Q psy9598 854 ------RELFFHTDYRTLN 866 (1915)
Q Consensus 854 ------~~~~F~~d~~~Lv 866 (1915)
..+.|..|++..+
T Consensus 515 ~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp SSCCCSCCEEEEETTEEEE
T ss_pred CCCcccCceEEEECCEEEE
Confidence 2466777777554
No 309
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.83 E-value=8.9e-06 Score=111.15 Aligned_cols=336 Identities=11% Similarity=0.046 Sum_probs=207.2
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEE-eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV 557 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~ 557 (1915)
|.++..+++|.+.+ |+.++-|..|+..++...... ..+...|.+|....+|.+.+. +.++-|.+||..++.......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCeEEEeec
Confidence 88999988886554 676656889998887654432 123567999998888876554 444348899988766544322
Q ss_pred c-------CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 558 G-------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 558 ~-------h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
. ....|.++...+. ..|..|+.+ -|.+|+..++.... .. ..+. ....-....|.++....+|
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~-----g~lWigt~~-Gl~~~~~~~~~~~~-~~-~~~~---~~~~l~~~~i~~i~~D~~g 321 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQ-----NRLWIGTFN-DLNIYHEGTDSFAS-YS-SNPV---ENGSLSQRSVRSIFMDSQG 321 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTT-----SCEEEEESS-CEEEEETTTTEEEE-EC-CCTT---STTSCSSSCEEEEEECTTS
T ss_pred CCCCccccCCCeEEEEEEcCC-----CCEEEEeCC-hhheEcCCCCeEEE-Ee-cCCC---CCCCCCCCcEEEEEEeCCc
Confidence 2 1356888887763 245555555 48888876653211 10 0000 0011123679999999988
Q ss_pred cEEEEEeCCCeEEEEEecCCCCCceeEEec----cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc
Q psy9598 631 LFLATGSGDHHVRVYKMDGVDSPLGILEVE----EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 706 (1915)
Q Consensus 631 ~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~----~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~ 706 (1915)
. |.+|+.++-|.+|+..... ...+.... -....|.+|....+|. |..|+.++-|..|+..++...........
T Consensus 322 ~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~ 398 (795)
T 4a2l_A 322 G-MWLGTYFGGLNYYHPIRNR-FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDE 398 (795)
T ss_dssp C-EEEEESSSCEEEECGGGGS-SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC---
T ss_pred C-EEEEECCCCeEEeCCCccc-ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCC
Confidence 6 5667777778888863211 11111000 1245699999888876 56678887899999887765432211000
Q ss_pred cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee----CCCCCeEEEEEccCCCCEEEE
Q psy9598 707 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK----GHTNEVFVLESHPFDSRVLLS 782 (1915)
Q Consensus 707 ~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~----gH~~~V~sl~~sp~dg~~LaS 782 (1915)
. ........|.+++.+.+|..|.+|+. ++-|.+||..+++...... .+...|.++...+ ++.+.+.
T Consensus 399 -----~---~~~l~~~~v~~i~~d~~g~~lWigt~-~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwig 468 (795)
T 4a2l_A 399 -----S---ARGIGSNNIKAVYVDEKKSLVYIGTH-AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLG 468 (795)
T ss_dssp -----------CCSCSCEEEEEEETTTTEEEEEET-TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEE
T ss_pred -----c---ccCCCCccEEEEEEcCCCCEEEEEeC-cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEE
Confidence 0 00012356899999999985555665 6779999998876544322 2345789998887 6775554
Q ss_pred EecCceEEEEECCCCccccceeeeee--ecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 783 AGHDGLIIIWDILSSKQRGYKWFHNI--VEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 783 gs~DG~I~IWdl~s~~~~~~~~~~~~--~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
. . +-|.+|+..++.. ..+... ........|.++...++|.+.+.+. +-|.+|+..++.
T Consensus 469 t-~-~Gl~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 469 T-L-SALVRFNPEQRSF---TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp E-S-SCEEEEETTTTEE---EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred e-c-CceeEEeCCCCeE---EEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 4 4 4588899876544 111100 0011235789999999998777655 458888876654
No 310
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.80 E-value=2e-10 Score=142.32 Aligned_cols=260 Identities=12% Similarity=-0.055 Sum_probs=141.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcc
Q psy9598 529 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 529 dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
++..|++|+.|+.|+.||..+|+.+..+.. +.+.+..+.. ++..+++++.||.|..||..++..+....+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~----~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV----EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC---------CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc----CCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 567899999999999999999999988876 4454444443 3467788889999999999888765443322110
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTAL 688 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~ 688 (1915)
.. ....+ +. .+..|++|+.++.|+.||..+. ..+..+..+. .+.++|++..|++++.||.|.
T Consensus 82 ~~------~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG---~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 82 LV------QASPC----RS-SDGILYMGKKQDIWYVIDLLTG---EKQQTLSSAF----ADSLSPSTSLLYLGRTEYTIT 143 (369)
T ss_dssp HH------TTCSC----C------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEE
T ss_pred cc------ccCce----Ee-cCCEEEEEeCCCEEEEEECCCC---cEEEEecCCC----cccccccCCEEEEEecCCEEE
Confidence 00 00111 11 2446778888999999998433 2233333332 234567888999999999999
Q ss_pred EEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC---CEEEEEEecCCeEEEEECCCCceEEEeeCCCC
Q psy9598 689 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD---RWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 765 (1915)
Q Consensus 689 IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg---~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~ 765 (1915)
.||..+++.+..... . .....+++.+. ..+++++. +|.|+.||..+|+.+..+... .
T Consensus 144 a~d~~tG~~~W~~~~-~-----------------~~~~~~~~~~~~~~~~v~~~~~-dg~v~a~d~~tG~~~W~~~~~-~ 203 (369)
T 2hz6_A 144 MYDTKTRELRWNATY-F-----------------DYAASLPEDDVDYKMSHFVSNG-DGLVVTVDSESGDVLWIQNYA-S 203 (369)
T ss_dssp CCCSSSSSCCCEEEE-E-----------------EECCBCCCCCTTCCCCEEEEET-SCEEEEECTTTCCEEEEEECS-S
T ss_pred EEECCCCCEEEeEec-c-----------------cccCccccCCccccceEEEECC-CCEEEEEECCCCcEEEEecCC-C
Confidence 999998873321110 0 00112222221 45666666 999999999999998887743 3
Q ss_pred CeEE-EEEccCCCCEEEE--EecCceEEEEECCCCc----cccceeeeeeecCCCCcceEEEEEcC--CCCEEEEEeCCC
Q psy9598 766 EVFV-LESHPFDSRVLLS--AGHDGLIIIWDILSSK----QRGYKWFHNIVEGQGEGALFDGKWSP--DGTTCALTDSYG 836 (1915)
Q Consensus 766 ~V~s-l~~sp~dg~~LaS--gs~DG~I~IWdl~s~~----~~~~~~~~~~~~~~~~~~V~~vafSp--dg~~Lasg~~dG 836 (1915)
++.. ..+++ ++.+.+. ...++.++++|..+|+ . +..+. ..+.+. +| .+..|++++.+|
T Consensus 204 pv~~~~~~~~-dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~--~W~~~------~~~~~~----sp~~~~g~lyv~~~~G 270 (369)
T 2hz6_A 204 PVVAFYVWQR-EGLRKVMHINVAVETLRYLTFMSGEVGRIT--KWKYP------FPKETE----AKSKLTPTLYVGKYST 270 (369)
T ss_dssp CEEEEEECTT-SSCEEECCEEEEHHHHHHHHHHHHHHHHHH--TSCCC------CCCHHH----HHHHSEEEECBEECSS
T ss_pred ceEEEEEecC-CceEeccceeecccceeeeehhcCCcccce--eeeec------cCcccc----ccccccceEEEecccC
Confidence 4433 34444 5543211 1124566777776665 3 22211 001111 22 345788888889
Q ss_pred eEEEEeCCC
Q psy9598 837 HLLVYGLGG 845 (1915)
Q Consensus 837 ~I~Iwdl~s 845 (1915)
.|+.++...
T Consensus 271 ~l~al~~~~ 279 (369)
T 2hz6_A 271 SLYASPSMV 279 (369)
T ss_dssp CEECCEEEE
T ss_pred CEEecCccc
Confidence 999888764
No 311
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.77 E-value=8.4e-07 Score=118.39 Aligned_cols=308 Identities=10% Similarity=0.015 Sum_probs=184.1
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCC----------E-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGE----------I-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~----------I-~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
+..|++++.++.|..+|..+|+.+..+...... + ..+++ .+..|+.++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 567888888999999999999999988643221 1 11222 3457888889999999999999998877
Q ss_pred ecCCC-CeEEEEeccCccCCCcEEEEEeC------CCeEEEEecccCccccceecc--Ccccc---------cccc----
Q psy9598 557 VGHQG-IITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFH--EPVMF---------NERI---- 614 (1915)
Q Consensus 557 ~~h~~-~V~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~~~--~~~~~---------~~~~---- 614 (1915)
..... ....+..+|.- .+..+++++. +|.|..||..++..+...... .+... ....
T Consensus 144 ~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 64211 11111112211 1235555543 589999999999876655431 11100 0000
Q ss_pred ----CCCCCceEEEEECCCCcEEEEEeCCCe-------------------EEEEEecCCCCCceeEEecc--CC------
Q psy9598 615 ----RPGNAHILCSSFSPGGLFLATGSGDHH-------------------VRVYKMDGVDSPLGILEVEE--HS------ 663 (1915)
Q Consensus 615 ----~~~~~~V~~l~fspdg~~Lasgs~Dg~-------------------I~IwDl~~~~~~~~i~~l~~--h~------ 663 (1915)
..+......+++++.+.++++++.++. |..+|..+ ...+..+.. |.
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t---G~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT---GKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT---CCEEEEEESSTTCCSCCCC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC---CceeeEeecCCCccccccC
Confidence 011122235788888888888887764 88888743 333333322 22
Q ss_pred -CCeeEEEEcCCCC---EEEEEeCCCcEEEEEccCCceEEeeeccc----------ccCCCCcccccccc----------
Q psy9598 664 -DKVDSIQWSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMN----------TCLPHTKETSDETN---------- 719 (1915)
Q Consensus 664 -~~V~sl~fspdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---------- 719 (1915)
.++....+..+|. .|++++.+|.+.++|..+++.+....... ...+..........
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 2222233334665 68899999999999999998653211000 00000000000000
Q ss_pred ccccEEEEEECCCCCEEEEEEe-----------------------------------cCCeEEEEECCCCceEEEeeCCC
Q psy9598 720 KKIKVTMVAWDASDRWVITAIN-----------------------------------FNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 720 ~~~~V~~va~spdg~~L~t~s~-----------------------------------~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
....-..++++|+...+++... .+|.|..||+.+|+.+..+..+.
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 0001123677777776665221 13789999999999988776443
Q ss_pred CCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 765 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 765 ~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
. +....+.. .+.+|++|+.||.|++||..+++. +..+.
T Consensus 459 ~-~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~--l~~~~ 496 (668)
T 1kv9_A 459 H-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEA--LWQFE 496 (668)
T ss_dssp S-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEE
T ss_pred C-CcCceeEe-CCCEEEEECCcccchhhhhhcChh--heEec
Confidence 2 23233334 568888999999999999999988 65554
No 312
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.72 E-value=1.8e-07 Score=119.07 Aligned_cols=286 Identities=8% Similarity=-0.046 Sum_probs=178.2
Q ss_pred EEEEECCCcEEEEECCCCcEEEEEeCC---------------------------------------CCCEEEEEEeC---
Q psy9598 491 IVTGADDLLIKLWRARDGKLLATLRGC---------------------------------------SGEISDIAIDN--- 528 (1915)
Q Consensus 491 LaTGs~Dg~I~IWd~~tg~~~~~l~gH---------------------------------------~~~I~~Lafsp--- 528 (1915)
+.+|+..|.|+|+-+.+++.+..+.-. .+.....++|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 556777888888888887777655210 01122344444
Q ss_pred --CCCEEEEEeC-CCcEEEEECCCCceEEEeec-CCCCeEEEEe-c-cCccCCCcEEEEEe------------------C
Q psy9598 529 --RNILLAAGTV-DKTIRIWNLQTLAPISVLVG-HQGIITGVNF-C-PLEVNGFNYLASTS------------------T 584 (1915)
Q Consensus 529 --dg~~LaSgs~-DgtIrVWDl~tg~~~~~l~~-h~~~V~sl~f-s-p~~~~d~~~L~sgs------------------~ 584 (1915)
||++|+.+.. ++.|.+.|+.+.++...+.- ....+..+++ . |+ +.++++++ .
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~----~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR----SNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB----CSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC----CcEEEEecccccccCCCCccccccccc
Confidence 7888877665 55799999999998885542 2345778887 3 63 47777774 3
Q ss_pred CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC---------------eEEEEEecC
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH---------------HVRVYKMDG 649 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg---------------~I~IwDl~~ 649 (1915)
++.|.++|..+.....++... +....++++|+|+++++.+.+. .|.++|+..
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vg-------------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~ 240 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVS-------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE 240 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEES-------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred CceEEEEECCCCeEEEEEEeC-------------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence 468899998877655544432 1234577999999999988753 234444310
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC--Cce-EEeeecccccCCCCccccccccccccEEE
Q psy9598 650 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC--SQW-RFIRLDMNTCLPHTKETSDETNKKIKVTM 726 (1915)
Q Consensus 650 ~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 726 (1915)
. ..+.++|.++.. +.|.|.|..+ +.. .... .......+
T Consensus 241 ------------~------~~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~I-----------------pvg~~PhG 281 (595)
T 1fwx_A 241 ------------I------EKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYI-----------------PIANNPHG 281 (595)
T ss_dssp ------------H------HHHHHHTCSEEE----TTEEEEECSGGGCCSSEEEE-----------------EEESSCCC
T ss_pred ------------e------eEeccCCCeeEE----CcEEEEeCcccCCceeEEEE-----------------ecCCCceE
Confidence 0 012234554433 5589999887 321 1100 01123456
Q ss_pred EEECCCCCEEEEEEecCCeEEEEECCCCc------------eEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 727 VAWDASDRWVITAINFNFQIKIWDAFNGD------------LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 727 va~spdg~~L~t~s~~Dg~I~vwD~~tg~------------~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+.++|||+++++++..+.+|.++|+.+.+ .+..+.. ......++|+| +|...++..-|+.|.+||+
T Consensus 282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDG-RGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECT-TSEEEEEETTTTEEEEEEH
T ss_pred EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECC-CCeEEEEEecCCcEEEEEh
Confidence 99999999999999879999999998653 3344432 23478899999 8855566677999999999
Q ss_pred CCCc--------cccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC
Q psy9598 795 LSSK--------QRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 795 ~s~~--------~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~ 834 (1915)
.... ...+..+.......|...-.++.++|||++|+++..
T Consensus 360 ~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 360 EDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp HHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred hHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 7721 101233221111011111122356899999999864
No 313
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=5e-05 Score=103.49 Aligned_cols=333 Identities=16% Similarity=0.093 Sum_probs=200.2
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR-------GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 549 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~-------gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t 549 (1915)
..|.+|..+++|.+.+ |+.+ -|.+||..++....... .....|.+|....+|.+.+ |+..+-|.+++..+
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCC
Confidence 5799999999887655 5555 58899987775443221 1245799999988886544 56545688899877
Q ss_pred CceEEEee--------------cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccC
Q psy9598 550 LAPISVLV--------------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615 (1915)
Q Consensus 550 g~~~~~l~--------------~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~ 615 (1915)
+....... .....|.+|..... ..|..|+.++-|..|+....... ..... +.. .....
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~-----g~lWigt~~~Gl~~~~~~~~~~~-~~~~~-~~~-~~~~~ 359 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF-----NNIWIGTWGGGINFISNAPPTFH-TWSYS-PTQ-MNESS 359 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSS-----CCEEEEEBSSCEEEECSSCCSCE-EEC-----C-CCSSC
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC-----CCEEEEecCCeEEEeCCCCCcce-eeccC-ccc-cccCC
Confidence 65432211 12356888877653 35677777777888887654321 11000 000 00001
Q ss_pred CCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeE-EeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 616 PGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL-EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 616 ~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~-~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
.....|.+++...+|. |.+|+.++-|.+|+..... ..... ........|.+|...++|. |..|+.++.|.+|+..+
T Consensus 360 l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 436 (781)
T 3v9f_A 360 LSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRV-AIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRL 436 (781)
T ss_dssp CSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEE-EECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSS
T ss_pred CCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCe-EEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCC
Confidence 1235699999988876 5566666668888863210 00000 0012346789998887776 55577777788888877
Q ss_pred CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCC-----CCCeEE
Q psy9598 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH-----TNEVFV 769 (1915)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH-----~~~V~s 769 (1915)
+.+...... ......|.++..+++|.+.+. +. +-|.+||..++......... ...|.+
T Consensus 437 ~~~~~~~~~--------------~~~~~~v~~i~~d~~g~lwig-t~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 437 KKFQIIELE--------------KNELLDVRVFYEDKNKKIWIG-TH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp CEEEECCST--------------TTCCCCEEEEEECTTSEEEEE-ET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred CcEEEeccC--------------CCCCCeEEEEEECCCCCEEEE-EC--CceEEEeCCCCeEEecccCcccccccceeEE
Confidence 764432110 113456889999888875554 33 46889998877654443222 457899
Q ss_pred EEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 770 LESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
+...+ ++.+.+ |+.++-|..|+..++.. ..+.. ..+.....|.++...++|.+.+++. .|.|..|+..++.
T Consensus 500 i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~---~~~~~-~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 500 IAQDS-EGRFWI-GTFGGGVGIYTPDMQLV---RKFNQ-YEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp EEECT-TCCEEE-EESSSCEEEECTTCCEE---EEECT-TTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred EEEcC-CCCEEE-EEcCCCEEEEeCCCCeE---EEccC-CCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 98887 676555 45444477788766543 22221 1122345789999999998766555 6665888876653
No 314
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.66 E-value=6.7e-09 Score=128.57 Aligned_cols=262 Identities=9% Similarity=0.013 Sum_probs=144.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEE
Q psy9598 487 LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGV 566 (1915)
Q Consensus 487 dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl 566 (1915)
++.+|++|+.||.|..||..+|+.+..+.. +.+.+..+..++.++++++.|+.|+.||..+|+.+..+..+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~-- 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV-- 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc--
Confidence 478999999999999999999999999886 5666666677888888888999999999999988776654422110
Q ss_pred EeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q psy9598 567 NFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYK 646 (1915)
Q Consensus 567 ~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwD 646 (1915)
..+|.. ..+..|++|+.++.|..||..++..+...... . ...++|++..|++|+.++.|+.||
T Consensus 84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-------------~---~~~~~p~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-------------F---ADSLSPSTSLLYLGRTEYTITMYD 146 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------------------EEEEEEEEEEECCC
T ss_pred ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCC-------------C---cccccccCCEEEEEecCCEEEEEE
Confidence 111211 02357888899999999999998765544322 1 123456788899999999999999
Q ss_pred ecCCCCCceeEEeccCCCCeeEEEEcCCC---CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 647 MDGVDSPLGILEVEEHSDKVDSIQWSHSH---LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 647 l~~~~~~~~i~~l~~h~~~V~sl~fspdg---~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
..+....-.. .... ....+++.+. ..+++++.||.|..||..+++.+.... . ....
T Consensus 147 ~~tG~~~W~~-~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~---------------~~pv 205 (369)
T 2hz6_A 147 TKTRELRWNA-TYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-Y---------------ASPV 205 (369)
T ss_dssp SSSSSCCCEE-EEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-C---------------SSCE
T ss_pred CCCCCEEEeE-eccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-C---------------CCce
Confidence 8543321111 1111 1222333332 467788999999999999887543221 0 0111
Q ss_pred EEEEEECCCCCEEEE--EEecCCeEEEEECCCCc----eEEEeeCCCCCeEEEEEccC-CCCEEEEEecCceEEEEECCC
Q psy9598 724 VTMVAWDASDRWVIT--AINFNFQIKIWDAFNGD----LVQVLKGHTNEVFVLESHPF-DSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 724 V~~va~spdg~~L~t--~s~~Dg~I~vwD~~tg~----~i~~l~gH~~~V~sl~~sp~-dg~~LaSgs~DG~I~IWdl~s 796 (1915)
+...+++.+|...+. ... ++.++++|..+|+ .+..+... +.+. +|. .+..|+.++.||.|+.++...
T Consensus 206 ~~~~~~~~dg~~~v~~~~~~-~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~----sp~~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 206 VAFYVWQREGLRKVMHINVA-VETLRYLTFMSGEVGRITKWKYPFP-KETE----AKSKLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp EEEEECTTSSCEEECCEEEE-HHHHHHHHHHHHHHHHHHTSCCCCC-CHHH----HHHHSEEEECBEECSSCEECCEEEE
T ss_pred EEEEEecCCceEeccceeec-ccceeeeehhcCCcccceeeeeccC-cccc----ccccccceEEEecccCCEEecCccc
Confidence 233455566643211 111 3456666665665 33333211 1111 121 235678888999999888763
No 315
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=7.6e-05 Score=101.70 Aligned_cols=359 Identities=13% Similarity=0.019 Sum_probs=213.7
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe--------------CCCCCEEEEEEeCCCCEEEEEeCCCc
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR--------------GCSGEISDIAIDNRNILLAAGTVDKT 541 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~--------------gH~~~I~~Lafspdg~~LaSgs~Dgt 541 (1915)
...|++|..+++|. |..|+..+-|.+++..++....... .....|.+|....+|.+. .|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCe
Confidence 46799999998886 5557775668899987765432211 134579999999988754 4666667
Q ss_pred EEEEECCCCceEEEee---------cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccccc
Q psy9598 542 IRIWNLQTLAPISVLV---------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE 612 (1915)
Q Consensus 542 IrVWDl~tg~~~~~l~---------~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~ 612 (1915)
|..|+..++....... .....|.++...+. ..|..|+.++-|..|+..++.... +..+
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-----g~lWigt~~~Gl~~~~~~~~~~~~---~~~~----- 401 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQ-----GKLWIGTDGGGINVFENGKRVAIY---NKEN----- 401 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTT-----SCEEEEEBSSCEEEEETTEEEEEC---C--------
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCC-----CCEEEEeCCCcEEEEECCCCeEEE---ccCC-----
Confidence 8889887655433211 02356888887653 356677766668888876542110 0000
Q ss_pred ccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec---cCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q psy9598 613 RIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE---EHSDKVDSIQWSHSHLRFVSGSRDGTALI 689 (1915)
Q Consensus 613 ~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~---~h~~~V~sl~fspdg~~L~sgs~DG~I~I 689 (1915)
.......|.++...++|. |.+|+.++-|..|+..+. .+..+. .....|.+|...++|. |..|+. +.|.+
T Consensus 402 -~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~ 473 (781)
T 3v9f_A 402 -RELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLK----KFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFV 473 (781)
T ss_dssp ---CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSC----EEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEE
T ss_pred -CCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCC----cEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEE
Confidence 012236799999988886 455776677888876321 122221 2346799998888776 455555 55888
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC---CCCC
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG---HTNE 766 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g---H~~~ 766 (1915)
||..++.+....... ........|.+++.+++|.+.+.+. ++-|..||..++........ ....
T Consensus 474 ~~~~~~~~~~~~~~~-----------~~~~~~~~i~~i~~d~~g~lWigt~--~~Gl~~~~~~~~~~~~~~~~~~l~~~~ 540 (781)
T 3v9f_A 474 IDLASKKVIHHYDTS-----------NSQLLENFVRSIAQDSEGRFWIGTF--GGGVGIYTPDMQLVRKFNQYEGFCSNT 540 (781)
T ss_dssp EESSSSSCCEEECTT-----------TSSCSCSCEEEEEECTTCCEEEEES--SSCEEEECTTCCEEEEECTTTTCSCSC
T ss_pred EeCCCCeEEecccCc-----------ccccccceeEEEEEcCCCCEEEEEc--CCCEEEEeCCCCeEEEccCCCCCCCCe
Confidence 888876644322100 0011235789999999998766554 34477798876654332211 2346
Q ss_pred eEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 767 VFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 767 V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
|.+|...+ ++.+.++ +..|.|..||..++.. ..+. ...+-....|.++...++|.+.+++ ..| |..|+..+.
T Consensus 541 i~~i~~d~-~g~lWi~-T~~Glv~~~d~~~~~~---~~~~-~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 541 INQIYRSS-KGQMWLA-TGEGLVCFPSARNFDY---QVFQ-RKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSKK 612 (781)
T ss_dssp EEEEEECT-TSCEEEE-ETTEEEEESCTTTCCC---EEEC-GGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTT
T ss_pred eEEEEECC-CCCEEEE-ECCCceEEECCCCCcE---EEcc-ccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCCC
Confidence 88998877 6775554 4477668898876643 2222 1122233568889999998866654 444 666666544
Q ss_pred cccc-----cCC------CceeecCCCCeeeecCCCccceeecc
Q psy9598 847 KRPQ-----NIP------RELFFHTDYRTLNRPNGLFEPTYDEV 879 (1915)
Q Consensus 847 ~~~~-----~l~------~~~~F~~d~~~Lv~~~~~~~~v~D~~ 879 (1915)
.... -++ ..++..++++..+....++ .++|..
T Consensus 613 ~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl-~~f~p~ 655 (781)
T 3v9f_A 613 CFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSINGL-CFFNPD 655 (781)
T ss_dssp EEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTEE-EEECSC
T ss_pred ceEEecccCCccccccccCceEECCCCEEEEECCCce-EEEChh
Confidence 3211 111 1344556777776555443 245543
No 316
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.63 E-value=1.7e-05 Score=103.54 Aligned_cols=309 Identities=11% Similarity=0.015 Sum_probs=176.1
Q ss_pred CCEEEEEEC-CCcEEEEEC-CCCcEEEEEeCCCCC-----------EEEEEEeCCCCE----EEEEeCCCcEEEEECCCC
Q psy9598 488 GEVIVTGAD-DLLIKLWRA-RDGKLLATLRGCSGE-----------ISDIAIDNRNIL----LAAGTVDKTIRIWNLQTL 550 (1915)
Q Consensus 488 g~~LaTGs~-Dg~I~IWd~-~tg~~~~~l~gH~~~-----------I~~Lafspdg~~----LaSgs~DgtIrVWDl~tg 550 (1915)
+..|++++. ++.|.-+|. .+|+.+..+...... ...++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 557777777 889999999 999999887643211 123455444444 888888999999999999
Q ss_pred ceEEEeecCCC-CeEEEEeccCccCCCcEEEEEe------CCCeEEEEecccCccccceeccCccccc------------
Q psy9598 551 APISVLVGHQG-IITGVNFCPLEVNGFNYLASTS------TDGCIGFWKYKLDIDISKTVFHEPVMFN------------ 611 (1915)
Q Consensus 551 ~~~~~l~~h~~-~V~sl~fsp~~~~d~~~L~sgs------~DgtI~iWDl~~~~~~~~~~~~~~~~~~------------ 611 (1915)
+.+........ .-..+.-.|.- .+ ..+++++ .+|.|..+|..+++.+.......+....
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEE-EC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 99877643220 00011111211 02 3555555 3899999999999876655443221000
Q ss_pred -------------cccCCCCCce-EEEEECCCCcEEEEEeCCC----------------eEEEEEecCCCCCceeEEec-
Q psy9598 612 -------------ERIRPGNAHI-LCSSFSPGGLFLATGSGDH----------------HVRVYKMDGVDSPLGILEVE- 660 (1915)
Q Consensus 612 -------------~~~~~~~~~V-~~l~fspdg~~Lasgs~Dg----------------~I~IwDl~~~~~~~~i~~l~- 660 (1915)
..+......+ ..+++.+...+|+.++.++ .|..+|..+ ...+..+.
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~T---G~~~W~~q~ 296 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT---GEAKFGYQK 296 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT---CCEEEEEES
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCC---CceeeEeec
Confidence 0000011111 2456667777777776653 788888743 22333222
Q ss_pred -cCC--------CCeeEEEEc-CCC---CEEEEEeCCCcEEEEEccCCceEEeeeccccc--------CCCCccc-----
Q psy9598 661 -EHS--------DKVDSIQWS-HSH---LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC--------LPHTKET----- 714 (1915)
Q Consensus 661 -~h~--------~~V~sl~fs-pdg---~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~--------~~~~~~~----- 714 (1915)
.|. .++. +... .+| ..++.++.+|.+.++|..+++.+......... .......
T Consensus 297 ~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred CCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccC
Confidence 221 1221 2222 467 46778899999999999999865433211000 0000000
Q ss_pred ----------cccccccccEEEEEECCCCCEEEEEEe--------------------------------------cCCeE
Q psy9598 715 ----------SDETNKKIKVTMVAWDASDRWVITAIN--------------------------------------FNFQI 746 (1915)
Q Consensus 715 ----------~~~~~~~~~V~~va~spdg~~L~t~s~--------------------------------------~Dg~I 746 (1915)
.........-..++++|+..++++... ..|.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 000000011123556666555544311 24789
Q ss_pred EEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 747 KIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 747 ~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
..||+.+|+.+...... .++.+-.+.. .+.+|+.|+.||.|+.||..+++. +..+.
T Consensus 456 ~A~D~~tG~~~W~~~~~-~~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~--lW~~~ 511 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDL--LWKFK 511 (599)
T ss_dssp EEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEE
T ss_pred EEEECCCCCEEeEecCC-CCccCcceEe-cCCEEEEECCCCeEEEEECCCCCE--EEEee
Confidence 99999999988776521 1111111122 467788899999999999999998 66554
No 317
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.63 E-value=1e-05 Score=99.72 Aligned_cols=242 Identities=12% Similarity=0.052 Sum_probs=150.7
Q ss_pred EEe--CCCCEEEE-EeCCCcEEEEECCCC----ceEEEee------c-CCCCeEEEEeccCccCCCcEEEEEeCC-----
Q psy9598 525 AID--NRNILLAA-GTVDKTIRIWNLQTL----APISVLV------G-HQGIITGVNFCPLEVNGFNYLASTSTD----- 585 (1915)
Q Consensus 525 afs--pdg~~LaS-gs~DgtIrVWDl~tg----~~~~~l~------~-h~~~V~sl~fsp~~~~d~~~L~sgs~D----- 585 (1915)
.++ .++++|+. |..++.|.|+|+.+. +.+.++. . ....-..+..+| ++ +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p----dG-i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP----DA-IYISALGNEEGEG 162 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS----SC-EEEEEEEETTSCS
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC----Ce-EEEEcCCCcCCCC
Confidence 346 77777665 456789999999765 5566662 0 111334566677 34 66666555
Q ss_pred -CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-------------------CCCeEEEE
Q psy9598 586 -GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-------------------GDHHVRVY 645 (1915)
Q Consensus 586 -gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-------------------~Dg~I~Iw 645 (1915)
|.|.++|..+...+........ .....+.+.|+|+++.+++.. ....|.+|
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~---------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRG---------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCT---------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred CCeEEEEECCCCeEEEEEccCCC---------CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 7899999998876554432210 112344688899999888874 36899999
Q ss_pred EecCCCCCceeEEeccC--CCCeeEEEE--cCCCCEEEEEe------CCCcEEEEEccCCceEEeee-cccccCCCCccc
Q psy9598 646 KMDGVDSPLGILEVEEH--SDKVDSIQW--SHSHLRFVSGS------RDGTALIWYYKCSQWRFIRL-DMNTCLPHTKET 714 (1915)
Q Consensus 646 Dl~~~~~~~~i~~l~~h--~~~V~sl~f--spdg~~L~sgs------~DG~I~IWDl~~~~~~~~~~-~~~~~~~~~~~~ 714 (1915)
|+.. ...+.++... ......|.| +|++.++++++ .+++|.+|....+.|..... +...........
T Consensus 234 D~~~---~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp 310 (462)
T 2ece_A 234 DLRK---RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLP 310 (462)
T ss_dssp ETTT---TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCC
T ss_pred ECCC---CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccc
Confidence 9953 2333333321 123445555 99999887776 56789888877665543321 000000000000
Q ss_pred ---cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC---CceEEEeeCCC--------------CCeEEEEEcc
Q psy9598 715 ---SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN---GDLVQVLKGHT--------------NEVFVLESHP 774 (1915)
Q Consensus 715 ---~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t---g~~i~~l~gH~--------------~~V~sl~~sp 774 (1915)
............|.+|+||++|+++....+.|.+||+.. .+++..+.... +.-..++++|
T Consensus 311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp 390 (462)
T 2ece_A 311 EILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR 390 (462)
T ss_dssp GGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT
T ss_pred ccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC
Confidence 000011245678999999999999998899999999863 35555554221 1247788999
Q ss_pred CCCCEEEEEe
Q psy9598 775 FDSRVLLSAG 784 (1915)
Q Consensus 775 ~dg~~LaSgs 784 (1915)
++++|+++.
T Consensus 391 -DGk~LyVaN 399 (462)
T 2ece_A 391 -DGRRVYVTN 399 (462)
T ss_dssp -TSSEEEEEC
T ss_pred -CCCEEEEEc
Confidence 888888776
No 318
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.62 E-value=3.7e-07 Score=110.16 Aligned_cols=267 Identities=12% Similarity=-0.018 Sum_probs=164.9
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS 554 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~ 554 (1915)
+...+.++.+.++|. |+.|+.+ |..||. +|..+..+..+...+....+. +..|..|+.++.|..+|.. +....
T Consensus 58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~ 130 (330)
T 3hxj_A 58 GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW 130 (330)
T ss_dssp GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE
Confidence 345567888887775 4445544 888886 666544443333223333444 4567778888999999998 88777
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 634 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La 634 (1915)
.+..+...+.++...+. ..|+.++.++.|..||.. +......... ...+.++.+.++|.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~-----g~l~vgt~~~~l~~~d~~-g~~~~~~~~~------------~~~~~~~~~d~~g~l~- 191 (330)
T 3hxj_A 131 RFKTKKAIYATPIVSED-----GTIYVGSNDNYLYAINPD-GTEKWRFKTN------------DAITSAASIGKDGTIY- 191 (330)
T ss_dssp EEECSSCCCSCCEECTT-----SCEEEECTTSEEEEECTT-SCEEEEEECS------------SCCCSCCEECTTCCEE-
T ss_pred EEcCCCceeeeeEEcCC-----CEEEEEcCCCEEEEECCC-CCEeEEEecC------------CCceeeeEEcCCCEEE-
Confidence 77666555666666542 357778888999999987 5433322211 2335566677777644
Q ss_pred EEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccc
Q psy9598 635 TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 714 (1915)
Q Consensus 635 sgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~ 714 (1915)
+|+ +.|..||. . ...+.........+.++.+.++|. |+.++.++.|..++.. +....... ..
T Consensus 192 v~t--~~l~~~d~-~---g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~~~~~~-~~--------- 253 (330)
T 3hxj_A 192 FGS--DKVYAINP-D---GTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GTEKWRFK-TG--------- 253 (330)
T ss_dssp EES--SSEEEECT-T---SCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SCEEEEEE-CS---------
T ss_pred EEe--CEEEEECC-C---CcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-CCEeEEee-CC---------
Confidence 444 77888883 2 223344444556688888888875 5566777888888753 33222111 00
Q ss_pred cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 715 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 715 ~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
...+.++.+..++. |++++. +|.|..+|. +++.+..+......+.++...+ ++. |..|+.+|.|++...
T Consensus 254 ------~~~~~~~~~~~~g~-l~v~t~-~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~-~g~-l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 254 ------KRIESSPVIGNTDT-IYFGSY-DGHLYAINP-DGTEKWNFETGSWIIATPVIDE-NGT-IYFGTRNGKFYALFN 322 (330)
T ss_dssp ------SCCCSCCEECTTSC-EEEECT-TCEEEEECT-TSCEEEEEECSSCCCSCCEECT-TCC-EEEECTTSCEEEEEC
T ss_pred ------CCccccceEcCCCe-EEEecC-CCCEEEECC-CCcEEEEEEcCCccccceEEcC-CCE-EEEEcCCCeEEEEec
Confidence 01112244555554 555655 788999996 7887777776666677777766 555 566889999998876
Q ss_pred CC
Q psy9598 795 LS 796 (1915)
Q Consensus 795 ~s 796 (1915)
..
T Consensus 323 ~~ 324 (330)
T 3hxj_A 323 LE 324 (330)
T ss_dssp --
T ss_pred cc
Confidence 54
No 319
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.60 E-value=1e-05 Score=99.58 Aligned_cols=243 Identities=10% Similarity=0.059 Sum_probs=150.5
Q ss_pred EEEEc--CCCCEEEEEE-CCCcEEEEECCCC----cEEEEEe-------CCCCCEEEEEEeCCCCEEEEEeCC------C
Q psy9598 481 CVLFD--KLGEVIVTGA-DDLLIKLWRARDG----KLLATLR-------GCSGEISDIAIDNRNILLAAGTVD------K 540 (1915)
Q Consensus 481 ~vafs--pdg~~LaTGs-~Dg~I~IWd~~tg----~~~~~l~-------gH~~~I~~Lafspdg~~LaSgs~D------g 540 (1915)
|..++ .++++|++.+ .++.|.|+|+.+. +++.++. .....-..+.++|+| +++++..+ |
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g 164 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPG 164 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCC
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCC
Confidence 33456 7788877654 5689999999766 6777773 111245667889999 77776655 7
Q ss_pred cEEEEECCCCceEEEeecCCC---CeEEEEeccCccCCCcEEEEEe-------------------CCCeEEEEecccCcc
Q psy9598 541 TIRIWNLQTLAPISVLVGHQG---IITGVNFCPLEVNGFNYLASTS-------------------TDGCIGFWKYKLDID 598 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~---~V~sl~fsp~~~~d~~~L~sgs-------------------~DgtI~iWDl~~~~~ 598 (1915)
.|.+.|..+++.+..+....+ .-..+.|+|.. +.+++.. .+.+|.+||+.+++.
T Consensus 165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~----~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN----EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT----TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred eEEEEECCCCeEEEEEccCCCCccccceEEECCCC----CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 899999999999998863222 23457788844 7777774 368999999998754
Q ss_pred ccceeccCccccccccCCCCCceEEEEE--CCCCcEEEEEe------CCCeEEEEEecCCCCCceeEE--eccC------
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSF--SPGGLFLATGS------GDHHVRVYKMDGVDSPLGILE--VEEH------ 662 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~f--spdg~~Lasgs------~Dg~I~IwDl~~~~~~~~i~~--l~~h------ 662 (1915)
+..+.... .......+.| +|+|+++++++ .+++|.+|..+. ........ +...
T Consensus 241 ~~tI~vg~----------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~l 309 (462)
T 2ece_A 241 IHSLTLGE----------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNL 309 (462)
T ss_dssp EEEEESCT----------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSC
T ss_pred eeEEecCC----------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccc
Confidence 44433320 0122344544 99999888777 466888777643 21111111 1110
Q ss_pred ----------CCCeeEEEEcCCCCEEEEEeC-CCcEEEEEccCC-ceEEee-ecccccCCCCccccccccccccEEEEEE
Q psy9598 663 ----------SDKVDSIQWSHSHLRFVSGSR-DGTALIWYYKCS-QWRFIR-LDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 663 ----------~~~V~sl~fspdg~~L~sgs~-DG~I~IWDl~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
......|.++++|++|+++.. .+.|.+||+... ....+. ............. ........-..+++
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~-~G~~~~ggPr~~~l 388 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHP-AGHKLTGAPQMLEI 388 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCT-TSCCCCSCCCCEEE
T ss_pred cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccc-ccccCCCCCCEEEE
Confidence 245788999999998877664 689999998633 211111 1111000000000 00001123467899
Q ss_pred CCCCCEEEEEE
Q psy9598 730 DASDRWVITAI 740 (1915)
Q Consensus 730 spdg~~L~t~s 740 (1915)
+++|++|+++.
T Consensus 389 SpDGk~LyVaN 399 (462)
T 2ece_A 389 SRDGRRVYVTN 399 (462)
T ss_dssp CTTSSEEEEEC
T ss_pred cCCCCEEEEEc
Confidence 99999999986
No 320
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.57 E-value=2.9e-05 Score=101.61 Aligned_cols=328 Identities=15% Similarity=0.045 Sum_probs=181.7
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCE---------EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeec
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEI---------SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG 558 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I---------~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~ 558 (1915)
+..|++++.++.|..+|..+|+.+..+....... ..+++ .+..|+.++.|+.|..+|..+|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 4566666664459999999999998886443210 11222 345788888999999999999999877654
Q ss_pred CCC----CeE-EEEeccCccCCCc-EEEEEeC------CCeEEEEecccCccccceeccCccc--------------cc-
Q psy9598 559 HQG----IIT-GVNFCPLEVNGFN-YLASTST------DGCIGFWKYKLDIDISKTVFHEPVM--------------FN- 611 (1915)
Q Consensus 559 h~~----~V~-sl~fsp~~~~d~~-~L~sgs~------DgtI~iWDl~~~~~~~~~~~~~~~~--------------~~- 611 (1915)
... .+. +..+.... .++. .+++++. +|.|..+|..+++.+.......... ..
T Consensus 146 ~~~~~~~~~~~sP~v~~~~-~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDG-KTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp SCGGGTCBCCSCCEEEECT-TTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCcCcccccCCEEeCCC-cCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 321 111 11111110 0122 5666653 7899999999987765443210000 00
Q ss_pred --------------cccCCCCCceEEEEECCCCcEEEEEeC--------------------C----CeEEEEEecCCCCC
Q psy9598 612 --------------ERIRPGNAHILCSSFSPGGLFLATGSG--------------------D----HHVRVYKMDGVDSP 653 (1915)
Q Consensus 612 --------------~~~~~~~~~V~~l~fspdg~~Lasgs~--------------------D----g~I~IwDl~~~~~~ 653 (1915)
.....+...-..+++++...+|+++.. | +.|..+|..+ .
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T---G 301 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS---G 301 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT---C
T ss_pred cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC---C
Confidence 000001111124677777777776663 2 5788888743 2
Q ss_pred ceeEEec--cCC--------CCeeEEEEc-CCCC---EEEEEeCCCcEEEEEccCCceEEeeeccccc-----C---CCC
Q psy9598 654 LGILEVE--EHS--------DKVDSIQWS-HSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNTC-----L---PHT 711 (1915)
Q Consensus 654 ~~i~~l~--~h~--------~~V~sl~fs-pdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~-----~---~~~ 711 (1915)
..+..+. .|. .++. +... .+|. .|+.++.+|.++++|..+++.+......... . ...
T Consensus 302 ~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~ 380 (582)
T 1flg_A 302 EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGR 380 (582)
T ss_dssp CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCC
T ss_pred CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCC
Confidence 3333332 232 1221 1221 4674 7888999999999999999865432211000 0 000
Q ss_pred ccc----c---------------cccc--ccccEEEEEECCCCCEEEEEEe-----------------------------
Q psy9598 712 KET----S---------------DETN--KKIKVTMVAWDASDRWVITAIN----------------------------- 741 (1915)
Q Consensus 712 ~~~----~---------------~~~~--~~~~V~~va~spdg~~L~t~s~----------------------------- 741 (1915)
... . .... .......++++|+...+++...
T Consensus 381 p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~ 460 (582)
T 1flg_A 381 PVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM 460 (582)
T ss_dssp EEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred EeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCC
Confidence 000 0 0000 0000124566776555554331
Q ss_pred ---cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceE
Q psy9598 742 ---FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALF 818 (1915)
Q Consensus 742 ---~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~ 818 (1915)
.+|.|..||+.+|+.+..+..+. .+..-.... .+.+++.|+.||.|+.||..+++. +..+.. ... ....
T Consensus 461 ~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~--lW~~~~--~~g--~~a~ 532 (582)
T 1flg_A 461 YDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKE--LWKFQT--GSG--IVSP 532 (582)
T ss_dssp CSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEEC--SSC--CCSC
T ss_pred CCCCcceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCE--EEEecC--CCC--cccC
Confidence 25789999999999887776432 222111122 457788899999999999999998 666551 111 1112
Q ss_pred EEEEcCCCCEEE
Q psy9598 819 DGKWSPDGTTCA 830 (1915)
Q Consensus 819 ~vafSpdg~~La 830 (1915)
-+.|..+|+..+
T Consensus 533 P~~y~~~G~qYv 544 (582)
T 1flg_A 533 PITWEQDGEQYL 544 (582)
T ss_dssp CEEEEETTEEEE
T ss_pred ceEEEECCEEEE
Confidence 255667876433
No 321
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.57 E-value=1.1e-05 Score=105.31 Aligned_cols=306 Identities=10% Similarity=0.022 Sum_probs=175.9
Q ss_pred CCEEEEEEC-CCcEEEEEC-CCCcEEEEEeCCCC-C---------E-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE
Q psy9598 488 GEVIVTGAD-DLLIKLWRA-RDGKLLATLRGCSG-E---------I-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS 554 (1915)
Q Consensus 488 g~~LaTGs~-Dg~I~IWd~-~tg~~~~~l~gH~~-~---------I-~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~ 554 (1915)
+..|++++. ++.|..+|. .+|+.+..+..... . + ..+++ .+..|+.++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 556777777 899999999 99999988753321 0 0 11233 35578888889999999999999987
Q ss_pred EeecCCCC-eEEEEeccCccCCCcEEEEEeC------CCeEEEEecccCccccceeccCcccc-----------------
Q psy9598 555 VLVGHQGI-ITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVMF----------------- 610 (1915)
Q Consensus 555 ~l~~h~~~-V~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~~~~~~~~----------------- 610 (1915)
.+...... -..+..+|.- .+ ..+++++. +|.|..+|..+++.+.......+...
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-EC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 76532100 0011112211 02 45566654 79999999999987665543321100
Q ss_pred ---cc-----c-cCCCCCceEEEEECCCCcEEEEEeCC----------------CeEEEEEecCCCCCceeEEec--cCC
Q psy9598 611 ---NE-----R-IRPGNAHILCSSFSPGGLFLATGSGD----------------HHVRVYKMDGVDSPLGILEVE--EHS 663 (1915)
Q Consensus 611 ---~~-----~-~~~~~~~V~~l~fspdg~~Lasgs~D----------------g~I~IwDl~~~~~~~~i~~l~--~h~ 663 (1915)
.. . ...+......+++.+....|+.++.+ +.|..+|..+ ...+..+. .|.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t---G~~~W~~~~~~~d 294 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT---GMAKWGYQKTPHD 294 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT---CCEEEEEESSTTC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC---CcEEEEecCCCCc
Confidence 00 0 00111111235566665666666532 2578888743 22333332 221
Q ss_pred --------CCeeEEEEcCCCC---EEEEEeCCCcEEEEEccCCceEEeeecccccC---------CCCccc---------
Q psy9598 664 --------DKVDSIQWSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL---------PHTKET--------- 714 (1915)
Q Consensus 664 --------~~V~sl~fspdg~---~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~---------~~~~~~--------- 714 (1915)
.++. +....+|. .++.++.+|.+.++|..+++.+.... ..... ......
T Consensus 295 ~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~-~~~~~~w~~~~d~~~g~p~~~~~~~~~~~ 372 (571)
T 2ad6_A 295 EWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK-VDPAVNVFKKVDLKTGTPVRDPEFATRMD 372 (571)
T ss_dssp SSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE-SSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred ccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec-ccCCccccccccccCCceecccccCCCCC
Confidence 2221 22224674 57788999999999999998654321 11000 000000
Q ss_pred ------cccccccccEEEEEECCCCCEEEEEEe------------------------------------cCCeEEEEECC
Q psy9598 715 ------SDETNKKIKVTMVAWDASDRWVITAIN------------------------------------FNFQIKIWDAF 752 (1915)
Q Consensus 715 ------~~~~~~~~~V~~va~spdg~~L~t~s~------------------------------------~Dg~I~vwD~~ 752 (1915)
.........-..++++|+...|++... .+|.|..||+.
T Consensus 373 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~ 452 (571)
T 2ad6_A 373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT 452 (571)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT
T ss_pred CCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECC
Confidence 000000001134678888777776542 25789999999
Q ss_pred CCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeee
Q psy9598 753 NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 806 (1915)
Q Consensus 753 tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~ 806 (1915)
+|+.+..+.... .+.+..+.. .+.+++.++.||.|++||..+++. +..+.
T Consensus 453 tG~~~W~~~~~~-~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~--lw~~~ 502 (571)
T 2ad6_A 453 TGKAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKE--LWNFK 502 (571)
T ss_dssp TCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCE--EEEEE
T ss_pred CCCEEEEecCCC-CccceeEEE-CCCEEEEEcCCCeEEEEECCCCCE--EEEEe
Confidence 999888776332 222222222 456777899999999999999998 65554
No 322
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.47 E-value=2.8e-06 Score=108.20 Aligned_cols=270 Identities=11% Similarity=-0.000 Sum_probs=174.2
Q ss_pred CCCCEEEEEECC-CcEEEEECCCCcEEEEEeCC-CCCEEEEEE-e-CCCCEEEEEe------------------CCCcEE
Q psy9598 486 KLGEVIVTGADD-LLIKLWRARDGKLLATLRGC-SGEISDIAI-D-NRNILLAAGT------------------VDKTIR 543 (1915)
Q Consensus 486 pdg~~LaTGs~D-g~I~IWd~~tg~~~~~l~gH-~~~I~~Laf-s-pdg~~LaSgs------------------~DgtIr 543 (1915)
+||++|+....+ +.|.+.|+.+.++...+.-. ...+..+++ + |++.++++++ .++.|.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 478888887654 57999999999988855422 245888998 5 8999998885 246899
Q ss_pred EEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCC---------------eEEEEecccCccccceeccCcc
Q psy9598 544 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG---------------CIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 544 VWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg---------------tI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
++|..+.+.+..+.--. ....++++|+ +.++++++.+. .|.+.|+....
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spd----Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~----------- 242 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYE----GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE----------- 242 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSS----SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-----------
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCC----CCEEEEEecCcccCcchhhccccccceEEEeecccee-----------
Confidence 99999998888776322 4466778884 47888877653 23333322211
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcE
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTA 687 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I 687 (1915)
.+.++|+++.. +.|.|.|.........+..+.. .....++.++|||+++++++ .+.+|
T Consensus 243 ----------------~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~V 301 (595)
T 1fwx_A 243 ----------------KAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTV 301 (595)
T ss_dssp ----------------HHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBE
T ss_pred ----------------EeccCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeE
Confidence 11223443333 4599999853111111222322 23567889999999776655 77899
Q ss_pred EEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC----------CceE
Q psy9598 688 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN----------GDLV 757 (1915)
Q Consensus 688 ~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t----------g~~i 757 (1915)
.++|+.+..... ...+..................++|+++| +++++...|+.|.+||+.+ .+.+
T Consensus 302 sVid~~~~~~~~-----~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi 375 (595)
T 1fwx_A 302 TVLDVTRFDAVF-----YENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIK 375 (595)
T ss_dssp EEEEGGGHHHHH-----HSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEE
T ss_pred EEEECccccccc-----ccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeE
Confidence 999998643100 00000001111122234567889999999 8888888899999999877 5678
Q ss_pred EEeeCCCCCe-----EEEEEccCCCCEEEEEec---Cce----------EEEEECCCCcc
Q psy9598 758 QVLKGHTNEV-----FVLESHPFDSRVLLSAGH---DGL----------IIIWDILSSKQ 799 (1915)
Q Consensus 758 ~~l~gH~~~V-----~sl~~sp~dg~~LaSgs~---DG~----------I~IWdl~s~~~ 799 (1915)
..+..|-.+- .++.++| ||++|+++.. |.. -.|+|+..++.
T Consensus 376 ~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 376 DKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp EEEECSSCEEEEEETTTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred EEeecccccccceeccceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 8887775532 1223567 9999988753 432 27899966554
No 323
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.45 E-value=8.9e-05 Score=86.69 Aligned_cols=248 Identities=12% Similarity=0.002 Sum_probs=151.8
Q ss_pred CEEEEEECCCcEEEEECCCCcE-----EEEEeCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEECCCCceEEEeecCCCC
Q psy9598 489 EVIVTGADDLLIKLWRARDGKL-----LATLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISVLVGHQGI 562 (1915)
Q Consensus 489 ~~LaTGs~Dg~I~IWd~~tg~~-----~~~l~gH~~~I~~Lafspdg~~La-Sgs~DgtIrVWDl~tg~~~~~l~~h~~~ 562 (1915)
.+|+.+.. +.|..+++..... ...+......+.+++|++++..|+ +...++.|.++++.++.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45555543 4788888765432 111221224578999999765554 4455789999999876554444333356
Q ss_pred eEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC---C
Q psy9598 563 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG---D 639 (1915)
Q Consensus 563 V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~---D 639 (1915)
..+|++.+.. +.++++....+.|.++++..... ..+ .. ........++++|++..|+.+.. .
T Consensus 81 p~~ia~d~~~---~~lyv~d~~~~~I~~~~~~g~~~-~~~-~~----------~~~~~P~~i~vd~~~g~lyv~~~~~~~ 145 (267)
T 1npe_A 81 PEGIALDHLG---RTIFWTDSQLDRIEVAKMDGTQR-RVL-FD----------TGLVNPRGIVTDPVRGNLYWTDWNRDN 145 (267)
T ss_dssp EEEEEEETTT---TEEEEEETTTTEEEEEETTSCSC-EEE-EC----------SSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred ccEEEEEecC---CeEEEEECCCCEEEEEEcCCCCE-EEE-EE----------CCCCCccEEEEeeCCCEEEEEECCCCC
Confidence 7899998842 35556666678999999864321 111 11 11145688999996555554443 4
Q ss_pred CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE-EEeCCCcEEEEEccCCceEEeeecccccCCCCccccccc
Q psy9598 640 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 718 (1915)
Q Consensus 640 g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~-sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1915)
+.|..+++++.. .... ..........|++++++..|+ +....+.|.++++..........
T Consensus 146 ~~I~~~~~dg~~--~~~~-~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---------------- 206 (267)
T 1npe_A 146 PKIETSHMDGTN--RRIL-AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---------------- 206 (267)
T ss_dssp CEEEEEETTSCC--CEEE-ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE----------------
T ss_pred cEEEEEecCCCC--cEEE-EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec----------------
Confidence 688888875322 1111 112334678999999876554 45566889999987543221110
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC-CCeEEEEEcc
Q psy9598 719 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT-NEVFVLESHP 774 (1915)
Q Consensus 719 ~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~-~~V~sl~~sp 774 (1915)
.......+++. +..|+.+....+.|.++|..+++.+..+.... ...+.|++.|
T Consensus 207 -~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 207 -GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp -CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred -CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 01122345553 56777776657899999999999988886433 2467777777
No 324
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.43 E-value=1.2e-05 Score=107.25 Aligned_cols=288 Identities=14% Similarity=0.072 Sum_probs=170.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCe-----------EEEEeccCccCCCcEEEEEeCCCeEEEEecccCcc
Q psy9598 530 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGII-----------TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 598 (1915)
Q Consensus 530 g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V-----------~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~ 598 (1915)
+..|+.++.++.|..+|..+|+.+..+....... ..+++. +..|++++.|+.|..+|..+++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~v~~~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW------GDKVYVGTLDGRLIALDAKTGKA 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE------BTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE------CCEEEEEcCCCEEEEEECCCCCE
Confidence 4467777778999999999999988875432210 112221 36788889999999999999987
Q ss_pred ccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC------CCeEEEEEecCCCCCceeEEecc-----------
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG------DHHVRVYKMDGVDSPLGILEVEE----------- 661 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~------Dg~I~IwDl~~~~~~~~i~~l~~----------- 661 (1915)
+........... .......+. .++ .|++++. +|.|..||..+. ..+..+..
T Consensus 140 ~W~~~~~~~~~~---~~~~~~P~v-----~~~-~v~vg~~~~~~~~~g~v~a~D~~tG---~~~W~~~~~~~~p~~~~~~ 207 (668)
T 1kv9_A 140 IWSQQTTDPAKP---YSITGAPRV-----VKG-KVIIGNGGAEYGVRGFVSAYDADTG---KLAWRFYTVPGDPALPYEH 207 (668)
T ss_dssp EEEEECSCTTSS---CBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTC---CEEEEEESSCCCTTSCCSS
T ss_pred eeeeccCCCCCc---ceecCCCEE-----ECC-EEEEeCCCCCcCCCCEEEEEECCCC---cEEEEecccCCCCCccccc
Confidence 666544211100 000011111 133 4555443 578888887432 22222211
Q ss_pred --------------------CCCCeeEEEEcCCCCEEEEEeCCCc-------------------EEEEEccCCceEEeee
Q psy9598 662 --------------------HSDKVDSIQWSHSHLRFVSGSRDGT-------------------ALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 662 --------------------h~~~V~sl~fspdg~~L~sgs~DG~-------------------I~IWDl~~~~~~~~~~ 702 (1915)
+......+++.+.+.+++.++.++. |..+|..+++.+....
T Consensus 208 ~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~ 287 (668)
T 1kv9_A 208 PELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ 287 (668)
T ss_dssp HHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred cccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence 1111234688888888888887764 8999999988654332
Q ss_pred cccccCCCCccccccccccccEEEEEECCCCC---EEEEEEecCCeEEEEECCCCceEEEeeCCCC------------Ce
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWDASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHTN------------EV 767 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~---~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~------------~V 767 (1915)
...... .. ...........+..+|. .|++++. +|.++++|..+|+++..+..... ++
T Consensus 288 ~~~~~~------wd-~~~~~~~~~~d~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~ 359 (668)
T 1kv9_A 288 VTPGDS------WD-FTATQQITLAELNIDGKPRKVLMQAPK-NGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPV 359 (668)
T ss_dssp SSTTCC------SC-CCCCSCEEEEEEEETTEEEEEEEECCT-TSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEE
T ss_pred cCCCcc------cc-ccCCCCcEEEEeccCCcEEEEEEEECC-CCEEEEEECCCCCEeccccccccccccccccccCCcc
Confidence 110000 00 00111222222223554 4666665 99999999999998854432210 00
Q ss_pred ------------------------EEEEEccCCCCEEEEE------------------------------------ecCc
Q psy9598 768 ------------------------FVLESHPFDSRVLLSA------------------------------------GHDG 787 (1915)
Q Consensus 768 ------------------------~sl~~sp~dg~~LaSg------------------------------------s~DG 787 (1915)
..++++| +..+++.. ..+|
T Consensus 360 ~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g 438 (668)
T 1kv9_A 360 EAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSG 438 (668)
T ss_dssp ECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEE
T ss_pred ccccccccCCeeEECCCCccccCCCcceECC-CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccc
Confidence 0156666 44444321 1348
Q ss_pred eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccC
Q psy9598 788 LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 788 ~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l 852 (1915)
.|..||+.+++. +..+.. ...+....+...|.+|++++.+|.|++||..+++.+..+
T Consensus 439 ~l~A~D~~tG~~--~W~~~~------~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 439 ALLAWDPVKQKA--AWKVPY------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp EEEEEETTTTEE--EEEEEE------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eEEEEeCCCCcE--EEEccC------CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 899999999987 444331 122333345557889999999999999999999877554
No 325
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.41 E-value=0.0001 Score=86.19 Aligned_cols=252 Identities=13% Similarity=0.043 Sum_probs=152.3
Q ss_pred EEEEEeCCCcEEEEECCCCce-----EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccC
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAP-----ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 606 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~-----~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~ 606 (1915)
+|+.+.. +.|+.+++..... ...+......+.+++|.+. ++.++++...++.|..+++.+.... . ...
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~---~~~ly~~d~~~~~I~~~~~~g~~~~-~-~~~- 75 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV---DKVVYWTDISEPSIGRASLHGGEPT-T-IIR- 75 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT---TTEEEEEETTTTEEEEEESSSCCCE-E-EEC-
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecC---CCEEEEEECCCCEEEEEecCCCCcE-E-EEE-
Confidence 4444443 4788888875432 1122222345678999884 2356666667789999998765321 1 110
Q ss_pred ccccccccCCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC--
Q psy9598 607 PVMFNERIRPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-- 683 (1915)
Q Consensus 607 ~~~~~~~~~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-- 683 (1915)
.......++++++++. ++++....+.|.++++++.. .... ..........+++++++..|+.+..
T Consensus 76 ---------~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~-~~~~~~~P~~i~vd~~~g~lyv~~~~~ 143 (267)
T 1npe_A 76 ---------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVL-FDTGLVNPRGIVTDPVRGNLYWTDWNR 143 (267)
T ss_dssp ---------TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEE-ECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred ---------CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEE-EECCCCCccEEEEeeCCCEEEEEECCC
Confidence 1124578999999654 45555567899999985322 1111 2222245789999997665555543
Q ss_pred -CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 684 -DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 684 -DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
.+.|..+++......... .........+++++++..|+.+....+.|.++++........+.+
T Consensus 144 ~~~~I~~~~~dg~~~~~~~----------------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~ 207 (267)
T 1npe_A 144 DNPKIETSHMDGTNRRILA----------------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG 207 (267)
T ss_dssp SSCEEEEEETTSCCCEEEE----------------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC
T ss_pred CCcEEEEEecCCCCcEEEE----------------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC
Confidence 367877776543211100 011234678999999988888887688999999976544444433
Q ss_pred CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCC
Q psy9598 763 HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT 827 (1915)
Q Consensus 763 H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~ 827 (1915)
. .....|++. .+.++++....+.|.++|..+++. +..+. .......+.+++.|++.
T Consensus 208 ~-~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~--~~~i~----~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 208 L-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE--MDTFH----PHKQTRLYGITIALSQC 263 (267)
T ss_dssp C-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE--EEEEC----CSSCCCCCCEEEECSCC
T ss_pred C-CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc--eEEEc----cccccccceeeecCccC
Confidence 2 334566653 345555555678999999988876 44443 11112366778888765
No 326
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.26 E-value=0.0001 Score=96.32 Aligned_cols=289 Identities=13% Similarity=0.015 Sum_probs=164.1
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCceEEEeecCCC-Ce----------EEEEeccCccCCCcEEEEEeCCCeEEEEecccC
Q psy9598 530 NILLAAGTV-DKTIRIWNL-QTLAPISVLVGHQG-II----------TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596 (1915)
Q Consensus 530 g~~LaSgs~-DgtIrVWDl-~tg~~~~~l~~h~~-~V----------~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~ 596 (1915)
+..|+.++. ++.|..+|. .+|+.+..+..... .+ ..+++ .+..|++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~v~~~dg~l~alD~~tG 135 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY------GAGQIVKKQANGHLLALDAKTG 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE------ETTEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE------ECCEEEEEeCCCEEEEEECCCC
Confidence 445666666 788999999 89998877653221 00 11222 2367888889999999999999
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC------CCeEEEEEecCCCCCceeEEeccCC-------
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG------DHHVRVYKMDGVDSPLGILEVEEHS------- 663 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~------Dg~I~IwDl~~~~~~~~i~~l~~h~------- 663 (1915)
+.+.......... ........+. .++ .|++++. +|.|..+|..+. ..+..+....
T Consensus 136 ~~~W~~~~~~~~~---~~~~~~~P~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG---~~~W~~~~~~~~~~~~~ 203 (571)
T 2ad6_A 136 KINWEVEVCDPKV---GSTLTQAPFV-----AKD-TVLMGCSGAELGVRGAVNAFDLKTG---ELKWRAFATGSDDSVRL 203 (571)
T ss_dssp CEEEEEECCCGGG---TCBCCSCCEE-----ETT-EEEEECBCGGGTCCCEEEEEETTTC---CEEEEEESSSCHHHHTB
T ss_pred CEEEEecCCCCCc---cceeccCCEE-----ECC-EEEEEecCCccCCCCEEEEEECCCC---cEEEEEccCCCcccccc
Confidence 8766554331100 0000111111 134 4555554 788999988432 2222221110
Q ss_pred ------------------------------C-CeeEEEEcCCCCEEEEEeCC----------------CcEEEEEccCCc
Q psy9598 664 ------------------------------D-KVDSIQWSHSHLRFVSGSRD----------------GTALIWYYKCSQ 696 (1915)
Q Consensus 664 ------------------------------~-~V~sl~fspdg~~L~sgs~D----------------G~I~IWDl~~~~ 696 (1915)
. ....+++.+....++.++.+ +.|..+|..+++
T Consensus 204 ~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~ 283 (571)
T 2ad6_A 204 AKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM 283 (571)
T ss_dssp CTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC
T ss_pred CcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCc
Confidence 0 01235666666677666542 358899999888
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEECCCCC---EEEEEEecCCeEEEEECCCCceEEEeeCCC---------
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHT--------- 764 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~---~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~--------- 764 (1915)
.+.......... .........+. +....+|+ .++.++. +|.++++|..+|+.+..+....
T Consensus 284 ~~W~~~~~~~d~------~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d 355 (571)
T 2ad6_A 284 AKWGYQKTPHDE------WDFAGVNQMVL-TDQPVNGKMTPLLSHIDR-NGILYTLNRENGNLIVAEKVDPAVNVFKKVD 355 (571)
T ss_dssp EEEEEESSTTCS------SCCCCCCCCEE-EEEEETTEEEEEEEEECT-TSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred EEEEecCCCCcc------cccccCCCCEE-EecccCCcEEEEEEEeCC-CcEEEEEECCCCCEEeeecccCCcccccccc
Confidence 554332110000 00000112221 22224664 4555555 8999999999999887765221
Q ss_pred ----CCe--------------------------EEEEEccCCCCEEEEEe------------------------------
Q psy9598 765 ----NEV--------------------------FVLESHPFDSRVLLSAG------------------------------ 784 (1915)
Q Consensus 765 ----~~V--------------------------~sl~~sp~dg~~LaSgs------------------------------ 784 (1915)
.+| ..++++| +..+|++..
T Consensus 356 ~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 434 (571)
T 2ad6_A 356 LKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG 434 (571)
T ss_dssp TTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred ccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-CCCEEEEEchhccccccccccccccCCccccccceeccC
Confidence 111 1346777 445555443
Q ss_pred -------cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 785 -------HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 785 -------~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
.+|.|..||+.+++. +..+.. ...+....+...+.++++++.+|.|+.||..+++.+..+.
T Consensus 435 ~~~~~~~~~g~l~a~D~~tG~~--~W~~~~------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 435 PNGPTKKEMGQIRAFDLTTGKA--KWTKWE------KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp TTSTTSCCCEEEEEECTTTCCE--EEEEEE------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccCCCCCCeEEEEECCCCCE--EEEecC------CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 358899999999887 444431 1122222233356778889999999999999998775543
No 327
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.20 E-value=0.00023 Score=82.72 Aligned_cols=209 Identities=11% Similarity=-0.059 Sum_probs=133.0
Q ss_pred eeeEEecCCCC--cEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCcEEEEEeCCC-CCEEEEEEeCCCCEE-EEEeCCC
Q psy9598 467 RQHYVNLGHLS--AVFCVLFDKLGEVIVTGAD--DLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILL-AAGTVDK 540 (1915)
Q Consensus 467 ~~~~~l~gH~~--~V~~vafspdg~~LaTGs~--Dg~I~IWd~~tg~~~~~l~gH~-~~I~~Lafspdg~~L-aSgs~Dg 540 (1915)
+.+.++ .|.. ....++|+++|.++++.+. ++.|.++|+.+++.+.++.-.. .....+++. +..| ++...++
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 344444 3443 3679999998755554443 5799999999999998875222 122345555 4445 4445688
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
.|.++|..+++.+..+......-+. ++++ +..|+++..++.|.++|..+......+....... .-..
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~g~g--lt~D----g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~-------p~~~ 153 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKDGWG--LATD----GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGH-------RVIR 153 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSSCCE--EEEC----SSSEEEECSSSEEEEECTTTCCEEEEEECEETTE-------ECCC
T ss_pred EEEEEECCCCcEEEEEECCCCCeEE--EEEC----CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCc-------cccc
Confidence 9999999999999888532121123 4442 3555555678899999998876555544331000 0123
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEec--cC-----------CCCeeEEEEcCCCCE-EEEEeCCCc
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE--EH-----------SDKVDSIQWSHSHLR-FVSGSRDGT 686 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~--~h-----------~~~V~sl~fspdg~~-L~sgs~DG~ 686 (1915)
++.+.|. +|...+....++.|.+.|..+. ..+..+. +. ......|+|++++.. |+++...+.
T Consensus 154 ~nele~~-dg~lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~ 229 (266)
T 2iwa_A 154 LNELEYI-NGEVWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK 229 (266)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred ceeEEEE-CCEEEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence 5677777 6765555556789999998433 3333332 11 135689999999875 556667888
Q ss_pred EEEEEccCC
Q psy9598 687 ALIWYYKCS 695 (1915)
Q Consensus 687 I~IWDl~~~ 695 (1915)
|.+.++...
T Consensus 230 v~~i~l~~~ 238 (266)
T 2iwa_A 230 LFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecc
Confidence 888887653
No 328
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.17 E-value=0.001 Score=79.52 Aligned_cols=248 Identities=13% Similarity=0.034 Sum_probs=144.5
Q ss_pred eeeEEecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCC--cEEE
Q psy9598 467 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDK--TIRI 544 (1915)
Q Consensus 467 ~~~~~l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~Dg--tIrV 544 (1915)
+....+..+ .....++|+++|+++++-..++.|..||... .....+. ....+.+|+++++|+++++..... .|..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 344444332 5678999999999777777889999999865 4443333 235689999999999777664432 4667
Q ss_pred EECCCCceEEEeec-CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 545 WNLQTLAPISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 545 WDl~tg~~~~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
++..++........ .......+++.+ ++..+++...++.|.++|..++....... . ...........-.....
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~----~~~~~v~d~~~g~i~~~d~~~~~~~v~~~-~-~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLS----DTQYLTADSYRGAIWLIDVVQPSGSIWLE-H-PMLARSNSESVFPAANG 173 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESS----SSEEEEEETTTTEEEEEETTTTEEEEEEE-C-GGGSCSSTTCCSCSEEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccC----CCcEEEEECCCCeEEEEeCCCCcEeEEEE-C-CccccccccCCCCcCCC
Confidence 78777775433221 222334555443 23455555568888888876532100000 0 00000000011123444
Q ss_pred EEECCCCcEEE-EEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeee
Q psy9598 624 SSFSPGGLFLA-TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 702 (1915)
Q Consensus 624 l~fspdg~~La-sgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~ 702 (1915)
+ ++++.+|+ +-...+.|.+|++...........+.. ......|+++++|.++++....+.|.+++.. +....+.
T Consensus 174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~- 248 (306)
T 2p4o_A 174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIA- 248 (306)
T ss_dssp E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEE-
T ss_pred c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEe-
Confidence 5 77776554 455678999999853211111111111 1346778999999887777778899999865 4322110
Q ss_pred cccccCCCCccccccccccccEEEEEEC---CCCCEEEEEEe
Q psy9598 703 DMNTCLPHTKETSDETNKKIKVTMVAWD---ASDRWVITAIN 741 (1915)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~V~~va~s---pdg~~L~t~s~ 741 (1915)
. ........++++|. +++..|+++..
T Consensus 249 ~-------------~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 249 Q-------------AEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp C-------------GGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred e-------------cccccCCceEEEEecccCCCCEEEEECC
Confidence 0 00112457889998 88888887765
No 329
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.15 E-value=0.00049 Score=82.86 Aligned_cols=244 Identities=10% Similarity=-0.031 Sum_probs=140.9
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeC--------------------CCCCEEEEEEeC-CC
Q psy9598 472 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG--------------------CSGEISDIAIDN-RN 530 (1915)
Q Consensus 472 l~gH~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~g--------------------H~~~I~~Lafsp-dg 530 (1915)
+.|......+++|+++|.+|+++..++.|..|+..++.... +.. ....+..|++.+ ++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 33433456678899999988889899999999987765432 221 013578999998 66
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEeec-----CCCCeEEEEecc-CccCCCcEEEEEeC-----------------CCe
Q psy9598 531 ILLAAGTVDKTIRIWNLQTLAPISVLVG-----HQGIITGVNFCP-LEVNGFNYLASTST-----------------DGC 587 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~tg~~~~~l~~-----h~~~V~sl~fsp-~~~~d~~~L~sgs~-----------------Dgt 587 (1915)
.++ .+...+.|.++|..++... .+.. .......+++.+ .+ .+.++... +|.
T Consensus 93 ~l~-v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G----~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 93 QLY-IVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTG----IVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp EEE-EEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTC----CEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred cEE-EEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCC----EEEEECCcccccccccceehcccCCCce
Confidence 544 4444455888888765432 2211 113467788877 43 45554322 366
Q ss_pred EEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE-eCCCeEEEEEecCCCCCceeEEeccCCCCe
Q psy9598 588 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKV 666 (1915)
Q Consensus 588 I~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg-s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V 666 (1915)
|..||..++..... .. .......++|+++|.+|+++ +..+.|.+|++.+..... ...+....+ .
T Consensus 167 v~~~d~~~~~~~~~--~~-----------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P 231 (322)
T 2fp8_A 167 LIKYDPSTKETTLL--LK-----------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-P 231 (322)
T ss_dssp EEEEETTTTEEEEE--EE-----------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-E
T ss_pred EEEEeCCCCEEEEe--cc-----------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-C
Confidence 77777655432110 00 01234578999999866555 556899999985422111 111111223 7
Q ss_pred eEEEEcCCCCEEEEEeC----------CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE
Q psy9598 667 DSIQWSHSHLRFVSGSR----------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 736 (1915)
Q Consensus 667 ~sl~fspdg~~L~sgs~----------DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L 736 (1915)
..|++.++|.++++... .+.|..+|.. ++......... . .....++++++. ++ .|
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~----g--------~~~~~~~~~~~~-~g-~L 296 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP----P--------FAGEHFEQIQEH-DG-LL 296 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT----T--------TTTSCCCEEEEE-TT-EE
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCC----C--------CccccceEEEEe-CC-EE
Confidence 88999999987666544 4667777764 33222111000 0 001234455552 44 45
Q ss_pred EEEEecCCeEEEEECC
Q psy9598 737 ITAINFNFQIKIWDAF 752 (1915)
Q Consensus 737 ~t~s~~Dg~I~vwD~~ 752 (1915)
++++...+.|.++++.
T Consensus 297 ~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 297 YIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEECSSCSEEEEEEC-
T ss_pred EEeecCCCceEEEecc
Confidence 5554437788888875
No 330
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.14 E-value=0.00025 Score=92.59 Aligned_cols=294 Identities=11% Similarity=-0.019 Sum_probs=163.1
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCceEEEeecCCCC-----------eEEEEeccCccCCCcEEEEEeCCCeEEEEecccC
Q psy9598 530 NILLAAGTV-DKTIRIWNL-QTLAPISVLVGHQGI-----------ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 596 (1915)
Q Consensus 530 g~~LaSgs~-DgtIrVWDl-~tg~~~~~l~~h~~~-----------V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~ 596 (1915)
+..|+.++. ++.|.-+|. .+|+.+..+...... ...+++.|........|++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666676 788999999 899988777543211 1223443311000123888889999999999999
Q ss_pred ccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe------CCCeEEEEEecCCCCCceeEEeccCC-------
Q psy9598 597 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS------GDHHVRVYKMDGVDSPLGILEVEEHS------- 663 (1915)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs------~Dg~I~IwDl~~~~~~~~i~~l~~h~------- 663 (1915)
+.+.......... ........+. .++ .|++++ .+|.|+.+|..+. ..+..+....
T Consensus 142 ~~~W~~~~~~~~~---~~~~~ssP~v-----~~g-~V~vg~~g~e~g~~g~v~A~D~~TG---~~~W~~~~~~~~~~~~~ 209 (599)
T 1w6s_A 142 ETVWKVENSDIKV---GSTLTIAPYV-----VKD-KVIIGSSGAELGVRGYLTAYDVKTG---EQVWRAYATGPDKDLLL 209 (599)
T ss_dssp CEEEEEECCCGGG---TCBCCSCCEE-----ETT-EEEECCBCGGGTCCCEEEEEETTTC---CEEEEEESSSCHHHHTB
T ss_pred CEEEeecCCCCCc---cceeecCCEE-----ECC-EEEEEecccccCCCCeEEEEECCCC---cEEEEEcCCCCcccccc
Confidence 8766554331100 0000111111 134 455554 3788999988432 2222221110
Q ss_pred ------------------------------CCe-eEEEEcCCCCEEEEEeCC----------------CcEEEEEccCCc
Q psy9598 664 ------------------------------DKV-DSIQWSHSHLRFVSGSRD----------------GTALIWYYKCSQ 696 (1915)
Q Consensus 664 ------------------------------~~V-~sl~fspdg~~L~sgs~D----------------G~I~IWDl~~~~ 696 (1915)
..+ ..+++.+...+++.++.+ +.|..+|..+++
T Consensus 210 ~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~ 289 (599)
T 1w6s_A 210 ASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE 289 (599)
T ss_dssp CTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred ccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence 001 134566777778877765 378899999988
Q ss_pred eEEeeecccccCCCCccccccccccccEEEEEEC-CCCC---EEEEEEecCCeEEEEECCCCceEEEeeCCC--------
Q psy9598 697 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHT-------- 764 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s-pdg~---~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~-------- 764 (1915)
.+.......... .........+. +... .+|+ .++.++. +|.|+++|..+|+++.......
T Consensus 290 ~~W~~q~~~~d~------wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~ 361 (599)
T 1w6s_A 290 AKFGYQKTPHDE------WDYAGVNVMML-SEQKDKDGKARKLLTHPDR-NGIVYTLDRTDGALVSANKLDDTVNVFKSV 361 (599)
T ss_dssp EEEEEESSTTCS------SCCCCCCCCEE-EEEECTTSCEEEEEEEECT-TSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred eeeEeecCCCcc------ccccCCCccEE-EeccccCCcEEEEEEEECC-CcEEEEEECCCCCEeecccccCCccccccc
Confidence 654332111000 00001111222 2222 4663 4554555 9999999999999887664211
Q ss_pred -----CCe--------------------------EEEEEccCCCCEEEEE------------------------------
Q psy9598 765 -----NEV--------------------------FVLESHPFDSRVLLSA------------------------------ 783 (1915)
Q Consensus 765 -----~~V--------------------------~sl~~sp~dg~~LaSg------------------------------ 783 (1915)
.++ ..++++| +..+|++.
T Consensus 362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-CCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 1345555 33343332
Q ss_pred ---e------cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccC
Q psy9598 784 ---G------HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 784 ---s------~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l 852 (1915)
+ .+|.|..||+.+++. +-....- .++..-.+...+.+|++++.||.|+.||..+++.+-.+
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~--~W~~~~~------~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDY--KWEKMER------FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCE--EEEEEES------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCcCCcccCCCcCeEEEEECCCCCE--EeEecCC------CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 1 357899999998887 4433311 11111112235777888999999999999999877544
No 331
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.07 E-value=0.063 Score=70.55 Aligned_cols=343 Identities=11% Similarity=-0.010 Sum_probs=194.0
Q ss_pred CCCcEEEEEEcCCCCEEE-EEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCce
Q psy9598 475 HLSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAP 552 (1915)
Q Consensus 475 H~~~V~~vafspdg~~La-TGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~ 552 (1915)
....+..|+|++.+..|+ +-..++.|..+++........+.........|++...+..| ++-...+.|.+.++.....
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~ 114 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR 114 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE
Confidence 346788999998665655 44557899999987654444444333457789998765544 5555678899999875543
Q ss_pred EEEeecCCCCeEEEEeccCccCCCcEEEEEe--CCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 553 ISVLVGHQGIITGVNFCPLEVNGFNYLASTS--TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 553 ~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs--~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
...+........+|++.|.. ..|+.+. ..+.|...++...... .+ . ..-.....+++++++
T Consensus 115 ~~l~~~~l~~P~~iavdp~~----G~lY~tD~g~~~~I~r~~~dG~~~~-~l-~-----------~~~~~P~GlalD~~~ 177 (628)
T 4a0p_A 115 QVLVWKDLDSPRALALDPAE----GFMYWTEWGGKPKIDRAAMDGSERT-TL-V-----------PNVGRANGLTIDYAK 177 (628)
T ss_dssp EEEECSSCCCEEEEEEETTT----TEEEEEECSSSCEEEEEETTSCSCE-EE-E-----------CSCSSEEEEEEETTT
T ss_pred EEEEeCCCCCcccEEEccCC----CeEEEeCCCCCCEEEEEeCCCCceE-EE-E-----------CCCCCcceEEEcccc
Confidence 33333444567899999843 3444443 2467777776544311 11 1 122567899999976
Q ss_pred cEEEEE-eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeec------
Q psy9598 631 LFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLD------ 703 (1915)
Q Consensus 631 ~~Lasg-s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~------ 703 (1915)
..|..+ ...+.|..+++++... .+ +........+|++.. +..+++-...+.|...|..++........
T Consensus 178 ~~LY~aD~~~~~I~~~d~dG~~~--~v--~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~ 252 (628)
T 4a0p_A 178 RRLYWTDLDTNLIESSNMLGLNR--EV--IADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVM 252 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCSC--EE--EEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCC
T ss_pred CEEEEEECCCCEEEEEcCCCCce--EE--eeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcc
Confidence 555554 4567899999865332 22 223334456777764 44455555567777777544431111000
Q ss_pred ------------cccc-----------------------CCCCccc-------------------------cc-------
Q psy9598 704 ------------MNTC-----------------------LPHTKET-------------------------SD------- 716 (1915)
Q Consensus 704 ------------~~~~-----------------------~~~~~~~-------------------------~~------- 716 (1915)
...| ..+.... ..
T Consensus 253 ~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~ 332 (628)
T 4a0p_A 253 DILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDI 332 (628)
T ss_dssp EEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCE
T ss_pred eeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceE
Confidence 0000 0000000 00
Q ss_pred --cccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC------CCCCeEEEEEccCCCCEEEEEecCce
Q psy9598 717 --ETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG------HTNEVFVLESHPFDSRVLLSAGHDGL 788 (1915)
Q Consensus 717 --~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g------H~~~V~sl~~sp~dg~~LaSgs~DG~ 788 (1915)
.......+..|+|++.+..|+.+....+.|+.+++........+.. ....+..|++....+++.+|-+..+.
T Consensus 333 ~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~ 412 (628)
T 4a0p_A 333 ILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNV 412 (628)
T ss_dssp ECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCE
Confidence 0001123455666666666666655456677776653332333322 22357889988744556667777889
Q ss_pred EEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCC
Q psy9598 789 IIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS-YG--HLLVYGLGGF 846 (1915)
Q Consensus 789 I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~-dG--~I~Iwdl~s~ 846 (1915)
|.+.++.. .. ...+. ........++++.|...+|..++. .. .|...+++..
T Consensus 413 I~v~~~~G-~~--~~~l~----~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~ 466 (628)
T 4a0p_A 413 INVTRLDG-RS--VGVVL----KGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT 466 (628)
T ss_dssp EEEEETTS-CE--EEEEE----ECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC
T ss_pred EEEEECCC-Ce--EEEEE----eCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC
Confidence 99999864 33 22221 123456889999995444444433 22 5777777654
No 332
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.07 E-value=3e-05 Score=103.45 Aligned_cols=278 Identities=10% Similarity=-0.012 Sum_probs=151.1
Q ss_pred EEEEcC-CCCEEEEEECCC-----------cEEEEECCCCcE--EEEEe-CCCCCEEEEEEeCCCCEEEEEeC-CCcEEE
Q psy9598 481 CVLFDK-LGEVIVTGADDL-----------LIKLWRARDGKL--LATLR-GCSGEISDIAIDNRNILLAAGTV-DKTIRI 544 (1915)
Q Consensus 481 ~vafsp-dg~~LaTGs~Dg-----------~I~IWd~~tg~~--~~~l~-gH~~~I~~Lafspdg~~LaSgs~-DgtIrV 544 (1915)
++++.+ +|++++.|+.+. .+.+||+.++.. +..+. .+.....++++..++.+++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556666 899999988653 588999988753 22332 23334456788899999999984 568999
Q ss_pred EECCCCceEEEeecCCCC-eEEEEeccCccCCCcEEEEEe-CC-----CeEEEEecccCccccceecc-CccccccccCC
Q psy9598 545 WNLQTLAPISVLVGHQGI-ITGVNFCPLEVNGFNYLASTS-TD-----GCIGFWKYKLDIDISKTVFH-EPVMFNERIRP 616 (1915)
Q Consensus 545 WDl~tg~~~~~l~~h~~~-V~sl~fsp~~~~d~~~L~sgs-~D-----gtI~iWDl~~~~~~~~~~~~-~~~~~~~~~~~ 616 (1915)
||..+..-...-..+... -.++++.+ ++.+++.|+ .+ ..+.+||..+.......... .+.. ..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~----dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~-----~~ 340 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMS----DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML-----TA 340 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECT----TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGC-----CC
T ss_pred ecCcCCceeECCCCCccccccceEEec----CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccc-----cc
Confidence 998876433221112111 12344444 447888888 44 46899998776421110000 0000 00
Q ss_pred CCCceEEEEECCCCcEEEEEeCC---------CeEEEEEecCCCCCceeEEecc------CCCCeeEEEEc-CCCCEEEE
Q psy9598 617 GNAHILCSSFSPGGLFLATGSGD---------HHVRVYKMDGVDSPLGILEVEE------HSDKVDSIQWS-HSHLRFVS 680 (1915)
Q Consensus 617 ~~~~V~~l~fspdg~~Lasgs~D---------g~I~IwDl~~~~~~~~i~~l~~------h~~~V~sl~fs-pdg~~L~s 680 (1915)
... ..+..++..++.|+.+ ..+..||............... ....-.++.|. .++.++++
T Consensus 341 ~~~----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~ 416 (656)
T 1k3i_A 341 DKQ----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416 (656)
T ss_dssp CTT----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred ccc----ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence 000 1122344444444444 3567788743221111110000 01122344443 36778888
Q ss_pred EeCCC-----------cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC------
Q psy9598 681 GSRDG-----------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN------ 743 (1915)
Q Consensus 681 gs~DG-----------~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D------ 743 (1915)
|+.++ .|.+||..+..|..... ..++ ......++++.++|..+++++...
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~mp----------~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS---NGLY----------FARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT---TCCS----------SCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEcc---CCCC----------CCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 87543 67888888888765320 0000 111123345668999999887521
Q ss_pred ----CeEEEEECCCCceEEE--eeCCCCCeEEEEEccCCCCEEEEEec
Q psy9598 744 ----FQIKIWDAFNGDLVQV--LKGHTNEVFVLESHPFDSRVLLSAGH 785 (1915)
Q Consensus 744 ----g~I~vwD~~tg~~i~~--l~gH~~~V~sl~~sp~dg~~LaSgs~ 785 (1915)
..+.+||..+.+.... +........+..+.| ++++++.||.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECT-TSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCccccccHhhcCC-CcEEEecCCC
Confidence 4689999877653321 111122223444567 8999999985
No 333
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.07 E-value=0.0019 Score=84.39 Aligned_cols=306 Identities=12% Similarity=-0.008 Sum_probs=166.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEeecCCCCe---------EEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 531 ILLAAGTVDKTIRIWNLQTLAPISVLVGHQGII---------TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V---------~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
..|+.++.++.|..+|..+|+.+..+....... ..+++. +..|+.++.|+.|..+|..+++.+..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~------~~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY------GDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE------TTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE------CCEEEEEeCCCEEEEEECCCCCEEee
Confidence 345555554448889999999888776433210 112221 35788889999999999999987665
Q ss_pred eeccCccccccccCCCCCceEEEEEC-CCCc-EEEEEeC------CCeEEEEEecCCCCCceeEEeccC-----------
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFS-PGGL-FLATGSG------DHHVRVYKMDGVDSPLGILEVEEH----------- 662 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fs-pdg~-~Lasgs~------Dg~I~IwDl~~~~~~~~i~~l~~h----------- 662 (1915)
........ ........+. .-. .+|+ .|++++. +|.|..+|..+.. .+......
T Consensus 143 ~~~~~~~~---~~~~~~sP~v--~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~---~~W~~~~~~~~~~p~~~~~ 214 (582)
T 1flg_A 143 KKFADHGA---GYTMTGAPTI--VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE---EIWMRPFVEGHMGRLNGKD 214 (582)
T ss_dssp EECSCGGG---TCBCCSCCEE--EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC---EEEEEESSTTCEEEETTEE
T ss_pred ecCCCCCc---CcccccCCEE--eCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC---EEeecCCCccccccccCcc
Confidence 54432110 0000111111 101 1222 4555542 6778777764322 12111110
Q ss_pred ------------------------------CCCeeEEEEcCCCCEEEEEeC--------------------C----CcEE
Q psy9598 663 ------------------------------SDKVDSIQWSHSHLRFVSGSR--------------------D----GTAL 688 (1915)
Q Consensus 663 ------------------------------~~~V~sl~fspdg~~L~sgs~--------------------D----G~I~ 688 (1915)
...-..+++.+...+++.++. | +.|.
T Consensus 215 ~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~ 294 (582)
T 1flg_A 215 STVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQV 294 (582)
T ss_dssp EEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEE
T ss_pred cccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEE
Confidence 000123566677777776663 2 5799
Q ss_pred EEEccCCceEEeeecccccCCCCccccccccccccEEEEEEC-CCCC---EEEEEEecCCeEEEEECCCCceEEEeeCCC
Q psy9598 689 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHT 764 (1915)
Q Consensus 689 IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~s-pdg~---~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~ 764 (1915)
.+|..+++.+......... ..........+. +... .+|+ .|+.++. +|.|+++|..+|+++..+....
T Consensus 295 AlD~~TG~~~W~~q~~~~d------~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~lw~~~~~~ 366 (582)
T 1flg_A 295 GVDPSSGEVKWFYQHTPND------AWDFSGNNELVL-FDYKAKDGKIVKATAHADR-NGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp EECTTTCCEEEEEESSTTC------CSCCCCCCCCEE-EEEECSSSCEEEEEEEECT-TSEEEEEETTTCCEEEEEESSS
T ss_pred EEeCCCCCEEEEEeCCCCC------cccccCCCCcEE-EeeecCCCCEEEEEEEECC-CceEEEEECCCCCEeccccccc
Confidence 9999998865433211000 000001111222 2222 4664 5555655 9999999999999987765432
Q ss_pred C--Ce-------------------------------------------EEEEEccCCCCEEEEEe---------------
Q psy9598 765 N--EV-------------------------------------------FVLESHPFDSRVLLSAG--------------- 784 (1915)
Q Consensus 765 ~--~V-------------------------------------------~sl~~sp~dg~~LaSgs--------------- 784 (1915)
. .. ..++++|..+.+++...
T Consensus 367 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 446 (582)
T 1flg_A 367 NITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTK 446 (582)
T ss_dssp CCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCT
T ss_pred CccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccC
Confidence 0 00 12345553333333221
Q ss_pred -----------------cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 785 -----------------HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 785 -----------------~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
.+|.|..||+.+++. +-.+... ..+........+.++++++.||.|+.||..+++
T Consensus 447 g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~--~W~~~~~------~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 447 GSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKV--VWEHKEH------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp TSCCCCEEEEEEESCSSCSEEEEEECTTTCCE--EEEEEES------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCceeccceeecCCCCCCcceEEEEECCCCCE--EEEecCC------CCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 368899999999987 4443311 111111122256788889999999999999998
Q ss_pred ccccCCC-------ceeecCCCCeee
Q psy9598 848 RPQNIPR-------ELFFHTDYRTLN 866 (1915)
Q Consensus 848 ~~~~l~~-------~~~F~~d~~~Lv 866 (1915)
.+..+.. .+.|..+++..+
T Consensus 519 ~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 519 ELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEEecCCCCcccCceEEEECCEEEE
Confidence 7754422 244555665443
No 334
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.03 E-value=0.0008 Score=80.95 Aligned_cols=254 Identities=12% Similarity=0.007 Sum_probs=144.6
Q ss_pred CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCcccc---c-----cccCCCCCceEEEEECC-CCc
Q psy9598 561 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF---N-----ERIRPGNAHILCSSFSP-GGL 631 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~V~~l~fsp-dg~ 631 (1915)
....+++|.+ ++.+++++..++.|..|+..++... .+........ . .........+.++++.+ +|.
T Consensus 19 ~~p~~i~~d~----~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~ 93 (322)
T 2fp8_A 19 YAPNSFTFDS----TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ 93 (322)
T ss_dssp SCCCCEECCT----TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred CCceEEEEcC----CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence 3456788887 3467888888999999987754321 1111000000 0 00000113578899998 665
Q ss_pred EEEEEeCCCeEEEEEecCCCCCceeEE-ecc-CCCCeeEEEEcC-CCCEEEEEeC-----------------CCcEEEEE
Q psy9598 632 FLATGSGDHHVRVYKMDGVDSPLGILE-VEE-HSDKVDSIQWSH-SHLRFVSGSR-----------------DGTALIWY 691 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~~~~~~~~i~~-l~~-h~~~V~sl~fsp-dg~~L~sgs~-----------------DG~I~IWD 691 (1915)
|+++...+.|..+|..+.. ...+.. ..+ .......|++.+ +|.++++... +|.|..||
T Consensus 94 -l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 94 -LYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp -EEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred -EEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 4445444557777763211 111111 111 123468899999 8987666432 36688888
Q ss_pred ccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc--eEEEeeCCCCCeEE
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD--LVQVLKGHTNEVFV 769 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~--~i~~l~gH~~~V~s 769 (1915)
..++....... .......++|+++|.+|+++....+.|.+|++.... ....+....+ ...
T Consensus 172 ~~~~~~~~~~~-----------------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~g 233 (322)
T 2fp8_A 172 PSTKETTLLLK-----------------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGN 233 (322)
T ss_dssp TTTTEEEEEEE-----------------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEE
T ss_pred CCCCEEEEecc-----------------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCC
Confidence 76655322110 012234689999999888776647899999987421 1122211223 778
Q ss_pred EEEccCCCCEEEEEec----------CceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEE
Q psy9598 770 LESHPFDSRVLLSAGH----------DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLL 839 (1915)
Q Consensus 770 l~~sp~dg~~LaSgs~----------DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~ 839 (1915)
|++.+ +++++++... .+.|.++|.. ++. +..+.. -.+.....+.++++ .++.++++....+.|.
T Consensus 234 i~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~--~~~~~~-~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~ 307 (322)
T 2fp8_A 234 IKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI--LEVIPL-PPPFAGEHFEQIQE-HDGLLYIGTLFHGSVG 307 (322)
T ss_dssp EEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCE--EEEEEC-CTTTTTSCCCEEEE-ETTEEEEECSSCSEEE
T ss_pred eEECC-CCCEEEEecCcccccccCCCccEEEEECCC-CCE--EEEEEC-CCCCccccceEEEE-eCCEEEEeecCCCceE
Confidence 99998 8887776654 4678888864 444 333331 11111245666766 4566666656778899
Q ss_pred EEeCCC
Q psy9598 840 VYGLGG 845 (1915)
Q Consensus 840 Iwdl~s 845 (1915)
++++..
T Consensus 308 ~~~~~~ 313 (322)
T 2fp8_A 308 ILVYDK 313 (322)
T ss_dssp EEEC--
T ss_pred EEeccc
Confidence 998764
No 335
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.02 E-value=0.00043 Score=79.59 Aligned_cols=197 Identities=11% Similarity=0.048 Sum_probs=123.0
Q ss_pred eeeeEEecCCCCc--EEEEEEcCCCCEEEEEECCC--cEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEe-CCC
Q psy9598 466 LRQHYVNLGHLSA--VFCVLFDKLGEVIVTGADDL--LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT-VDK 540 (1915)
Q Consensus 466 ~~~~~~l~gH~~~--V~~vafspdg~~LaTGs~Dg--~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs-~Dg 540 (1915)
++++.++ -|... ...+.|+ ++.++++++.+| .|+++|+.+|+.+..+.... .+....+.+++..|..+. .++
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence 3444455 34333 4678898 677777777766 89999999999999886433 333322233344555444 588
Q ss_pred cEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 541 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 541 tIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
.+.+||..+++.+.++.... .=+.++ + ++..|+.+..++.|.++|..+...+..+....... .-..
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~-eG~glt--~----dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~-------~~~~ 173 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG-EGWGLT--H----NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE-------ELPE 173 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS-CCCCEE--E----CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE-------ECCC
T ss_pred EEEEEECccCcEEEEEECCC-CceEEe--c----CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc-------cccc
Confidence 99999999999999887432 113343 3 23556666667889999998887655544321000 0023
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc------------CCCCeeEEEEcCCCCEEEEEeC
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE------------HSDKVDSIQWSHSHLRFVSGSR 683 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~------------h~~~V~sl~fspdg~~L~sgs~ 683 (1915)
++.+.|. +|...+....+..|.+.|..+. ..+..+.. -....+.|||+|++..|++.+.
T Consensus 174 lNELe~~-~G~lyan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 174 LNELEWV-DGEIFANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cceeEEE-CCEEEEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 4456665 6765555556778888887432 22222211 1235689999998887776654
No 336
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.00 E-value=0.0017 Score=77.46 Aligned_cols=248 Identities=8% Similarity=-0.035 Sum_probs=140.6
Q ss_pred eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 552 ~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
.+..+... ....+++|.+. +.++++...++.|..||..+.. .. ... ....+.+++++++|+
T Consensus 24 ~~~~~p~~-~~pegia~~~~----g~lyv~d~~~~~I~~~d~~g~~-~~--~~~-----------~~~~p~gia~~~dG~ 84 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPD----GTIFVTNHEVGEIVSITPDGNQ-QI--HAT-----------VEGKVSGLAFTSNGD 84 (306)
T ss_dssp EEEEECTT-CCEEEEEECTT----SCEEEEETTTTEEEEECTTCCE-EE--EEE-----------CSSEEEEEEECTTSC
T ss_pred EeEeCCCC-CCcceEEECCC----CCEEEEeCCCCeEEEECCCCce-EE--EEe-----------CCCCceeEEEcCCCc
Confidence 34444322 45678999883 4677776688999999876531 11 111 114578999999998
Q ss_pred EEEEEeCCC--eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCC
Q psy9598 632 FLATGSGDH--HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 709 (1915)
Q Consensus 632 ~Lasgs~Dg--~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~ 709 (1915)
++++....+ .|..++... .....+..+ ........+++.+.+..+++...+|.|.++|..++......... ...
T Consensus 85 l~vad~~~~~~~v~~~d~~~-g~~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~--~~~ 160 (306)
T 2p4o_A 85 LVATGWNADSIPVVSLVKSD-GTVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHP--MLA 160 (306)
T ss_dssp EEEEEECTTSCEEEEEECTT-SCEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECG--GGS
T ss_pred EEEEeccCCcceEEEEcCCC-CeEEEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECC--ccc
Confidence 766654433 355566422 111222222 12233456666665555555556888888887654211111000 000
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-Cce--EEEeeCCCCCeEEEEEccCCCCEEEEEecC
Q psy9598 710 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 710 ~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~~--i~~l~gH~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
.. .........+.+ ++++.+|+++....+.|.+|++.. +.. ...+.. ......|++.+ +++++++....
T Consensus 161 ~~----~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~-dG~l~va~~~~ 232 (306)
T 2p4o_A 161 RS----NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDV-EGNLYGATHIY 232 (306)
T ss_dssp CS----STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBT-TCCEEEECBTT
T ss_pred cc----cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECC-CCCEEEEeCCC
Confidence 00 000111223344 788888888887688999999864 332 112211 12345678888 88887777778
Q ss_pred ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc---CCCCEEEEEeCCC
Q psy9598 787 GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS---PDGTTCALTDSYG 836 (1915)
Q Consensus 787 G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS---pdg~~Lasg~~dG 836 (1915)
+.|.+++.. ++. . .+.. +. ......++++|. |++..|.+++..+
T Consensus 233 ~~V~~~~~~-G~~--~-~~~~-~~-~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 233 NSVVRIAPD-RST--T-IIAQ-AE-QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CCEEEECTT-CCE--E-EEEC-GG-GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CeEEEECCC-CCE--E-EEee-cc-cccCCceEEEEecccCCCCEEEEECCCC
Confidence 899999875 433 1 1110 11 122457899998 8988777776643
No 337
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.97 E-value=0.00024 Score=94.64 Aligned_cols=279 Identities=11% Similarity=-0.001 Sum_probs=150.4
Q ss_pred EEEEeC-CCCEEEEEeCCC-----------cEEEEECCCCce--EEEeec-CCCCeEEEEeccCccCCCcEEEEEe-CCC
Q psy9598 523 DIAIDN-RNILLAAGTVDK-----------TIRIWNLQTLAP--ISVLVG-HQGIITGVNFCPLEVNGFNYLASTS-TDG 586 (1915)
Q Consensus 523 ~Lafsp-dg~~LaSgs~Dg-----------tIrVWDl~tg~~--~~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs-~Dg 586 (1915)
++++.+ ++.+++.|+.+. .+.+||+.++.- +..+.. +.....++++.. ++.++++|+ .++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~----~g~lyv~GG~~~~ 265 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG----NGQIVVTGGNDAK 265 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT----TSCEEEECSSSTT
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC----CCCEEEeCCCCCC
Confidence 566777 888888887643 588999987653 333322 333344566665 457888888 456
Q ss_pred eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CC-----CeEEEEEecCCCCCceeEEec
Q psy9598 587 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GD-----HHVRVYKMDGVDSPLGILEVE 660 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~D-----g~I~IwDl~~~~~~~~i~~l~ 660 (1915)
.+.+||..+.......... .. ..-.++++.++|++++.|+ .+ ..+.+||.... . ...+.
T Consensus 266 ~v~~yd~~t~~W~~~~~~~----------~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~-~---W~~~~ 330 (656)
T 1k3i_A 266 KTSLYDSSSDSWIPGPDMQ----------VA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK-T---WTSLP 330 (656)
T ss_dssp CEEEEEGGGTEEEECCCCS----------SC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT-E---EEEET
T ss_pred ceEEecCcCCceeECCCCC----------cc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC-c---ceeCC
Confidence 8999998876422111100 01 1123456667899999988 34 46889998432 1 11110
Q ss_pred c-----CCCCeeEEEEcCCCCEEEEEeCCC---------cEEEEEccCCceEEeeecccccCCCCccccccccccccEEE
Q psy9598 661 E-----HSDKVDSIQWSHSHLRFVSGSRDG---------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 726 (1915)
Q Consensus 661 ~-----h~~~V~sl~fspdg~~L~sgs~DG---------~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 726 (1915)
. ....-....+..++..++.|+.+| .+..||..+..|.......... .........-.+
T Consensus 331 ~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~-------~~~~~~~~~~~a 403 (656)
T 1k3i_A 331 NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN-------RGVAPDAMCGNA 403 (656)
T ss_dssp TSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEET-------TEECCCCBTCEE
T ss_pred CccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccc-------cccCCCCCCCce
Confidence 0 000000011234455555565544 4678888877765321100000 000000112244
Q ss_pred EEECC-CCCEEEEEEecCC-----------eEEEEECCCCceEEEe--eCCCCCe-EEEEEccCCCCEEEEEecC-----
Q psy9598 727 VAWDA-SDRWVITAINFNF-----------QIKIWDAFNGDLVQVL--KGHTNEV-FVLESHPFDSRVLLSAGHD----- 786 (1915)
Q Consensus 727 va~sp-dg~~L~t~s~~Dg-----------~I~vwD~~tg~~i~~l--~gH~~~V-~sl~~sp~dg~~LaSgs~D----- 786 (1915)
+.|.. ++..+++|+. ++ .|.+||..+....... ..+.... .++++.| ++.+++.||.+
T Consensus 404 v~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 404 VMYDAVKGKILTFGGS-PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEETTTTEEEEECCB-SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTT
T ss_pred EeccCCCCeEEEEeCC-CCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCc
Confidence 55543 5666666664 32 6888888776654443 2222222 3445567 88999999865
Q ss_pred ------ceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeC
Q psy9598 787 ------GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 787 ------G~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~ 834 (1915)
..+.+||..+.+-..+..+. .......++.+.+||+++++|+.
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~~~~~~-----~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYKQNPNS-----IVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEECCCCS-----SCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCcccceEEEcCCCCceeecCCCC-----CccccccHhhcCCCcEEEecCCC
Confidence 46899998775431111110 11122234556789999998885
No 338
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.95 E-value=0.00018 Score=83.58 Aligned_cols=193 Identities=9% Similarity=-0.029 Sum_probs=124.8
Q ss_pred CeeEEEEcCCCCEEEEEeC--CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 665 KVDSIQWSHSHLRFVSGSR--DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~sgs~--DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
....|+|++++.++++.+. ++.|.++|+.+++...... . . .......++++ +..|+.+...
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l----~----------~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-M----D----------DSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-C----C----------TTCCEEEEEEE--TTEEEEEETT
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-c----C----------CCcceEEEEEe--CCEEEEEEec
Confidence 3579999998755555543 5799999999998654321 0 0 01111234443 6678777777
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEE
Q psy9598 743 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW 822 (1915)
Q Consensus 743 Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vaf 822 (1915)
++.+.++|..+++.+..+......-+. +++ ++..|+++..++.|.++|..+.+. +..+..-..+.....+..+.|
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~-Dg~~l~vs~gs~~l~viD~~t~~v--~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKDGWG--LAT-DGKILYGSDGTSILYEIDPHTFKL--IKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSSCCE--EEE-CSSSEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEECCCCCeEE--EEE-CCCEEEEECCCCeEEEEECCCCcE--EEEEEECCCCcccccceeEEE
Confidence 999999999999999998632122233 445 555555555688999999988776 555442211122234677888
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCcccccCC-------------------CceeecCCCCeeeecCCCc--cceeeccc
Q psy9598 823 SPDGTTCALTDSYGHLLVYGLGGFKRPQNIP-------------------RELFFHTDYRTLNRPNGLF--EPTYDEVT 880 (1915)
Q Consensus 823 Spdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~-------------------~~~~F~~d~~~Lv~~~~~~--~~v~D~~t 880 (1915)
. +|..++....++.|.+.|..+++....++ ..+.|++++..+......+ +.+.+..+
T Consensus 160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 8 77666666677899999999988765553 3567888876655433333 33445443
No 339
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.94 E-value=0.006 Score=74.37 Aligned_cols=240 Identities=13% Similarity=-0.044 Sum_probs=147.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccc
Q psy9598 521 ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDIS 600 (1915)
Q Consensus 521 I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~ 600 (1915)
.+|.+..++. +|+.+. ...|+..++........+. ....+..|+|.+. ++.++++-...+.|..+++.+.....
T Consensus 36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~---~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHR---RELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp SCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEecc---ccEEEEEeccCCceEEEecCCCCceE
Confidence 3455555544 343333 3458888887655444443 3445789999874 34556666677889989887653211
Q ss_pred ceeccCccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE
Q psy9598 601 KTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV 679 (1915)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~ 679 (1915)
+ .. ........+++.+. +.++++-...+.|.++++++.. . ...+...-.....|+++|.+..|+
T Consensus 110 -~-~~----------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~-~~l~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 110 -V-VS----------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--R-KVLLWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp -E-EC----------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--C-EEEECTTCSCEEEEEEETTTTEEE
T ss_pred -E-Ee----------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--e-EEEEeCCCCCcceEEEecCcCeEE
Confidence 1 00 11133567888874 5555666667899999985432 1 122233345678999998655544
Q ss_pred -EEeCC-CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE
Q psy9598 680 -SGSRD-GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV 757 (1915)
Q Consensus 680 -sgs~D-G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i 757 (1915)
+-... +.|..+++.......+ ........+.|+|++++..|+.+....+.|..+++......
T Consensus 175 ~td~~~~~~I~r~~~dG~~~~~~----------------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~ 238 (349)
T 3v64_C 175 WTDWGNTPRIEASSMDGSGRRII----------------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238 (349)
T ss_dssp EEECSSSCEEEEEETTSCSCEES----------------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred EeccCCCCEEEEEeCCCCCcEEE----------------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE
Confidence 44444 6777777654331110 00122346789999998888888876789999998654433
Q ss_pred EEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 758 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 758 ~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
..+........+|++. .+.++++-...+.|..++..++..
T Consensus 239 ~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 239 AVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCCCc
Confidence 3444444556778873 466666666778888888666655
No 340
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.92 E-value=0.011 Score=71.35 Aligned_cols=277 Identities=12% Similarity=0.014 Sum_probs=149.6
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee----cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEec
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV----GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 593 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~----~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl 593 (1915)
...+.+|.|.+.+..+++ +..|.| ++....|+.-..+. .....+.+|.|.+ ..++.++..|.|.. ..
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~------~~~~~~g~~g~i~~-S~ 105 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG------NEGWIVGEPPIMLH-TT 105 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET------TEEEEEEETTEEEE-ES
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC------CeEEEEECCCeEEE-EC
Confidence 457899999887777775 456755 33444443322221 1244688899875 23344455665433 22
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcC
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 673 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fsp 673 (1915)
+.+......... ......+..+.+.+++..++++ .+|.|.. ..+...+...+ ...+...+.++++.+
T Consensus 106 DgG~tW~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~--~~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 106 DGGQSWSQIPLD---------PKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQAL--VQEAIGVMRNLNRSP 172 (327)
T ss_dssp STTSSCEECCCC---------TTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEE--ECSCCCCEEEEEECT
T ss_pred CCCCCceECccc---------cCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEe--ecCCCcceEEEEEcC
Confidence 223221111110 0112346778877777666655 4554422 11222222222 234556789999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC
Q psy9598 674 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 674 dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t 753 (1915)
++.+++++...+..+-+|-....|.... ......+..+++++++..++++ . +|.+++++...
T Consensus 173 ~~~~~~~g~~G~~~~S~d~gG~tW~~~~----------------~~~~~~~~~~~~~~~g~~~~~~-~-~G~~~~s~~D~ 234 (327)
T 2xbg_A 173 SGEYVAVSSRGSFYSTWEPGQTAWEPHN----------------RTTSRRLHNMGFTPDGRLWMIV-N-GGKIAFSDPDN 234 (327)
T ss_dssp TSCEEEEETTSSEEEEECTTCSSCEEEE----------------CCSSSCEEEEEECTTSCEEEEE-T-TTEEEEEETTE
T ss_pred CCcEEEEECCCcEEEEeCCCCCceeECC----------------CCCCCccceeEECCCCCEEEEe-C-CceEEEecCCC
Confidence 9887776654443333432223333221 0123467788899988766544 4 78887764332
Q ss_pred CceEEEee-C---CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecC-CCCcceEEEEEcCCCCE
Q psy9598 754 GDLVQVLK-G---HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEG-QGEGALFDGKWSPDGTT 828 (1915)
Q Consensus 754 g~~i~~l~-g---H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~-~~~~~V~~vafSpdg~~ 828 (1915)
|.....+. + +...+.+|.+.+ ++.+++++ .+|.| ++....+.. -..+. .. .....++++.|.+++.
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~i-~~S~DgG~t--W~~~~---~~~~~~~~~~~v~~~~~~~- 305 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGAL-LCSQDGGQT--WQQDV---DVKKVPSNFYKILFFSPDQ- 305 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTCE-EEESSTTSS--CEECG---GGTTSSSCCCEEEEEETTE-
T ss_pred CCeeEeccCCcccCCcceEEEEecC-CCEEEEEe-CCCeE-EEeCCCCcc--cEEcC---ccCCCCCCeEEEEEECCCc-
Confidence 33322222 1 223588999987 66666654 47777 455555543 22111 11 1235678888875554
Q ss_pred EEEEeCCCeEEEEeC
Q psy9598 829 CALTDSYGHLLVYGL 843 (1915)
Q Consensus 829 Lasg~~dG~I~Iwdl 843 (1915)
+++++.+|.|.-++-
T Consensus 306 ~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 306 GFILGQKGILLRYVT 320 (327)
T ss_dssp EEEECSTTEEEEECC
T ss_pred eEEEcCCceEEEEcC
Confidence 666677888776653
No 341
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.0021 Score=80.76 Aligned_cols=257 Identities=7% Similarity=-0.026 Sum_probs=142.2
Q ss_pred CcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC-CC----cEEEEECCCC
Q psy9598 477 SAVFCVLFDK-LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV-DK----TIRIWNLQTL 550 (1915)
Q Consensus 477 ~~V~~vafsp-dg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~-Dg----tIrVWDl~tg 550 (1915)
.....|+|+| ++..|+++...+.|.++|+.++.....+ ........|+|+++|++|+.+.. ++ .|.+.+ ..+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 3457899998 4556666665588999999776654443 34566899999999996555543 22 233333 333
Q ss_pred ceE--EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 551 API--SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 551 ~~~--~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
... ..+. ......++++.|. ++.++++-..++.|..|+..++........ +.......++|+|
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~---~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-----------~~~~~P~gia~~p 279 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPI---NGELYFNSWNAGQVFRYDFTTQETTPLFTI-----------QDSGWEFHIQFHP 279 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTT---TCCEEEEETTTTEEEEEETTTTEEEEEEEC-----------SSSSCCEEEEECT
T ss_pred ceeeeeeec-cCCCceEEEEeCC---CCEEEEEECCCCEEEEEECCCCcEEEEEEc-----------CCCCcceeEEEcC
Confidence 222 2232 1234567888883 346666666788999999875532111000 1113467899999
Q ss_pred CCcE-EEEEeCCCeEEEEEecCCCC-CceeEEeccC---------------CCCee-EEEEc--------CCCCEEEEEe
Q psy9598 629 GGLF-LATGSGDHHVRVYKMDGVDS-PLGILEVEEH---------------SDKVD-SIQWS--------HSHLRFVSGS 682 (1915)
Q Consensus 629 dg~~-Lasgs~Dg~I~IwDl~~~~~-~~~i~~l~~h---------------~~~V~-sl~fs--------pdg~~L~sgs 682 (1915)
+|++ +++-...+.|..++.+.... ...+..+.+. -.... .+++. ++|.++++-.
T Consensus 280 dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~ 359 (430)
T 3tc9_A 280 SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDR 359 (430)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEG
T ss_pred CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEEC
Confidence 9994 55555678999998854211 0001111111 11122 45443 3455556656
Q ss_pred CCCcEEEEEccCCceEEeeecccccCCCCccc-cccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 683 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKET-SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 683 ~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
..+.|+.++. .+....+.-.-.....+.... ......-.....|++++++..|+++...++.|+.+++
T Consensus 360 ~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 360 ENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp GGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 6677888773 343222111000000000000 0011122356889999976667777665778888765
No 342
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.89 E-value=0.0038 Score=78.46 Aligned_cols=258 Identities=8% Similarity=-0.043 Sum_probs=143.1
Q ss_pred CcEEEEEEcCC--CCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC---Cc-EEEEECCCC
Q psy9598 477 SAVFCVLFDKL--GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD---KT-IRIWNLQTL 550 (1915)
Q Consensus 477 ~~V~~vafspd--g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D---gt-IrVWDl~tg 550 (1915)
..-.+|+|+|+ +..|+.+...+.|+.+++.++..... .+......+|+|+++|.++++.... .. +...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 45678999984 44555554448999999988776554 3445568999999999955554321 12 222332221
Q ss_pred ce-EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 551 AP-ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 551 ~~-~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
.. ...+. .......+++.|. ++.++++-..++.|..++..++.....+... ........++|+|+
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~---~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~----------~~~~~~~~ia~dpd 283 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQ---NGKIYYTRYHHAMISSYDPATGTLTEEEVMM----------DTKGSNFHIVWHPT 283 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTT---TCCEEECBTTCSEEEEECTTTCCEEEEEEEC----------SCCSSCEEEEECTT
T ss_pred eecccccc-ccCCCCEEEEeCC---CCeEEEEECCCCEEEEEECCCCeEEEEEecc----------CCCCCcccEEEeCC
Confidence 11 11221 2334566778772 2355556667788999988755431111110 01122347999999
Q ss_pred CcEE-EEEeCCCeEEEEEecCCCC-CceeEEeccC---------------CCCeeEEEE---------cCCCCEEEEEeC
Q psy9598 630 GLFL-ATGSGDHHVRVYKMDGVDS-PLGILEVEEH---------------SDKVDSIQW---------SHSHLRFVSGSR 683 (1915)
Q Consensus 630 g~~L-asgs~Dg~I~IwDl~~~~~-~~~i~~l~~h---------------~~~V~sl~f---------spdg~~L~sgs~ 683 (1915)
|++| ++-...+.|..++++.... ......+.+. -.....|++ ..+|.++++-..
T Consensus 284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~ 363 (433)
T 4hw6_A 284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD 363 (433)
T ss_dssp SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence 9844 5555678999988753211 1111111111 123567888 677777777777
Q ss_pred CCcEEEEEccCCceEEeeecccc-cCCCCccc-cccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy9598 684 DGTALIWYYKCSQWRFIRLDMNT-CLPHTKET-SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 751 (1915)
Q Consensus 684 DG~I~IWDl~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~ 751 (1915)
.+.|+.++. .+....+. .... +..+.... ......-.....|++++.+..|+++...++.|+.+++
T Consensus 364 n~~I~~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 364 SHTVRVLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TTEEEEECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCEEEEECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 788998875 34322211 1100 00000000 0011122346789999555556666654778888765
No 343
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.89 E-value=0.077 Score=69.64 Aligned_cols=334 Identities=10% Similarity=-0.030 Sum_probs=182.5
Q ss_pred CCcEEEEEEcCCCCE-EEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCce
Q psy9598 476 LSAVFCVLFDKLGEV-IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV--DKTIRIWNLQTLAP 552 (1915)
Q Consensus 476 ~~~V~~vafspdg~~-LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~--DgtIrVWDl~tg~~ 552 (1915)
......|++++.+.. +++-...+.|.+.++........+...-.....|++.|.+.+|+.+.. .+.|...++.....
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 367889999985554 455556789999998654433333344456788999997655555443 35676667664333
Q ss_pred EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 553 ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 553 ~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
...+.......+.|++.+.. +.++++-+..+.|..+++....... +. . ........+++..+ .+
T Consensus 163 ~~l~~~~~~~P~Glald~~~---~~LY~aD~~~~~I~~~~~dG~~~~~-~~-~----------~~~~~P~gi~~~~~-~l 226 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEE---QKLYWADAKLNFIHKSNLDGTNRQA-VV-K----------GSLPHPFALTLFED-IL 226 (619)
T ss_dssp EEEECSSCSSEEEEEEETTT---TEEEEEETTTCCEEEESSSCCEEC---------------------CCCEEESSS-EE
T ss_pred EEEEeCCCCCCcEEEEEccC---CEEEEEeCCCCeEEEecCCCCccEE-EE-e----------CCCCCceEEEEeCC-EE
Confidence 33333344567899998843 3555555667788888886542111 10 0 00112235566554 44
Q ss_pred EEEEeCCCeEEEEEecCCCC----------CceeEEeccC------------CCCeeEEEE-cCCCCEEEEEeCCC----
Q psy9598 633 LATGSGDHHVRVYKMDGVDS----------PLGILEVEEH------------SDKVDSIQW-SHSHLRFVSGSRDG---- 685 (1915)
Q Consensus 633 Lasgs~Dg~I~IwDl~~~~~----------~~~i~~l~~h------------~~~V~sl~f-spdg~~L~sgs~DG---- 685 (1915)
+++-...+.|...|..+... +..+..+... .+....+|+ +|.+....+.+.+|
T Consensus 227 y~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~ 306 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLL 306 (619)
T ss_dssp EEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBC
T ss_pred EEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheec
Confidence 44444566777777533221 1111111000 001111222 11111111222221
Q ss_pred --------------------cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy9598 686 --------------------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 745 (1915)
Q Consensus 686 --------------------~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~ 745 (1915)
.|+..++..... ..... ....-..+..|+|++.+..|+.+....+.
T Consensus 307 ~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~-------------~~~~~-~~~~l~~~~~ld~d~~~~~ly~sD~~~~~ 372 (619)
T 3s94_A 307 ENGKTCKDGATELLLLARRTDLRRISLDTPDF-------------TDIVL-QLEDIRHAIAIDYDPVEGYIYWTDDEVRA 372 (619)
T ss_dssp TTSSCBCSSCSEEEEEEESSCEEEEESSSTTC-------------CCEEC-CCSCCSSEEEEEEETTTTEEEEEETTTTE
T ss_pred ccCcccCCCCceEEEEEcccceEEEecCCCcc-------------ceeEE-eccccCccEEEEEEcCCCeEEEEeCCCCe
Confidence 222222221110 00000 01112346789999988888877765889
Q ss_pred EEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCC
Q psy9598 746 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 825 (1915)
Q Consensus 746 I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpd 825 (1915)
|+.+++........+...-.....|++....++++++-+..+.|.+.++..... ..+. ........++++.|.
T Consensus 373 I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~---~~l~----~~~l~~P~~iavdp~ 445 (619)
T 3s94_A 373 IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR---KILI----SEDLEEPRAIVLDPM 445 (619)
T ss_dssp EEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEE----CTTCCSEEEEEEETT
T ss_pred EEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE---EEEE----ECCCCCeeeEEEEcC
Confidence 999998765444444433345678888864566777767788999999875432 2221 223456889999997
Q ss_pred CCEEEEEeC--CCeEEEEeCCCC
Q psy9598 826 GTTCALTDS--YGHLLVYGLGGF 846 (1915)
Q Consensus 826 g~~Lasg~~--dG~I~Iwdl~s~ 846 (1915)
...|..++. .+.|...+++..
T Consensus 446 ~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 446 VGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp TTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcEEEecCCCCCEEEEEccCCC
Confidence 666666653 367777777654
No 344
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.88 E-value=0.0046 Score=75.38 Aligned_cols=247 Identities=11% Similarity=-0.003 Sum_probs=149.2
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEECCCCceEEE
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~La-Sgs~DgtIrVWDl~tg~~~~~ 555 (1915)
+..+|.+..+.+ +|+.+. ...|+..++........+.+ ...+..|+|++.+..|+ +-...+.|..+++..+.....
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 345577776644 444443 34688888876655554443 34588999997655554 545678899999987665444
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE-
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA- 634 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La- 634 (1915)
+.........|++.+. ++.++++-...+.|.+.++..... ..... ........++++|.+..|+
T Consensus 111 ~~~~~~~p~glavd~~---~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~----------~~l~~P~~iavdp~~g~ly~ 175 (349)
T 3v64_C 111 VSTGLESPGGLAVDWV---HDKLYWTDSGTSRIEVANLDGAHR--KVLLW----------QSLEKPRAIALHPMEGTIYW 175 (349)
T ss_dssp ECSSCSCCCEEEEETT---TTEEEEEETTTTEEEEEETTSCSC--EEEEC----------TTCSCEEEEEEETTTTEEEE
T ss_pred EeCCCCCccEEEEecC---CCeEEEEcCCCCeEEEEcCCCCce--EEEEe----------CCCCCcceEEEecCcCeEEE
Confidence 4433445678888763 345666666778899998875421 11111 1124568899998655444
Q ss_pred EEeCC-CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCc
Q psy9598 635 TGSGD-HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 712 (1915)
Q Consensus 635 sgs~D-g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~ 712 (1915)
+-... +.|..+++++... . ......-.....|+|++++..|+.+ +..+.|..+++.......+..
T Consensus 176 td~~~~~~I~r~~~dG~~~--~-~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~---------- 242 (349)
T 3v64_C 176 TDWGNTPRIEASSMDGSGR--R-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---------- 242 (349)
T ss_dssp EECSSSCEEEEEETTSCSC--E-ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------
T ss_pred eccCCCCEEEEEeCCCCCc--E-EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe----------
Confidence 44444 7788888754321 1 1112233457899999866655554 456778888876543221110
Q ss_pred cccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 713 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 713 ~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
........+++ ++..|+.+....+.|..++..+|..+..+..
T Consensus 243 ------~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 243 ------QGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp ------SSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred ------CCCCCceEEEE--ECCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 01123455666 2445666665578888888777776666653
No 345
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.86 E-value=0.015 Score=70.13 Aligned_cols=275 Identities=9% Similarity=0.012 Sum_probs=149.5
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEe----CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR----GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~----gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~ 551 (1915)
...+.+|.|...+..+|+| ..|.| ++....|+.-..+. .....+.+|.|++ +..++ ++..+.|.. ....|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 4579999998878877754 56655 34444443211111 1244689999986 44444 445665443 333344
Q ss_pred eEEEee---cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECC
Q psy9598 552 PISVLV---GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 628 (1915)
Q Consensus 552 ~~~~l~---~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp 628 (1915)
.-..+. .+.+.+..|.+.+. +..++++ .+|.|.. ..+.+....... .+....+.++++.+
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~----~~~~~~~-~~g~v~~-S~DgG~tW~~~~-----------~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGN----GSAEMIT-NVGAIYR-TKDSGKNWQALV-----------QEAIGVMRNLNRSP 172 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEET----TEEEEEE-TTCCEEE-ESSTTSSEEEEE-----------CSCCCCEEEEEECT
T ss_pred CceECccccCCCCCeEEEEEECC----CCEEEEe-CCccEEE-EcCCCCCCEEee-----------cCCCcceEEEEEcC
Confidence 333322 23456777877652 3455544 4554322 112222111111 11234688999999
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCc-eEEeeeccccc
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ-WRFIRLDMNTC 707 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~-~~~~~~~~~~~ 707 (1915)
++.+++++...+..+-+|- +......+. ......+..+++.+++..+ .++.+|.+.+++...+. |....
T Consensus 173 ~~~~~~~g~~G~~~~S~d~-gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~------ 242 (327)
T 2xbg_A 173 SGEYVAVSSRGSFYSTWEP-GQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELL------ 242 (327)
T ss_dssp TSCEEEEETTSSEEEEECT-TCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCB------
T ss_pred CCcEEEEECCCcEEEEeCC-CCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEecc------
Confidence 9887776654333333332 122332221 2345678899999988655 55567877776322121 11100
Q ss_pred CCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee---CCCCCeEEEEEccCCCCEEEEEe
Q psy9598 708 LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK---GHTNEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 708 ~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~---gH~~~V~sl~~sp~dg~~LaSgs 784 (1915)
.+ .......+..+++.+++..++++. +|.| ++....|..-..+. .+...+++|.|.+ + ..+++++
T Consensus 243 ~~-------~~~~~~~~~~v~~~~~~~~~~~g~--~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~-~~~~~~G 310 (327)
T 2xbg_A 243 SP-------LRRNSVGFLDLAYRTPNEVWLAGG--AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-P-DQGFILG 310 (327)
T ss_dssp CT-------TSSCCSCEEEEEESSSSCEEEEES--TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-T-TEEEEEC
T ss_pred CC-------cccCCcceEEEEecCCCEEEEEeC--CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-C-CceEEEc
Confidence 00 001123578899998877666554 6766 34455555444443 2345678888875 3 4577778
Q ss_pred cCceEEEEEC
Q psy9598 785 HDGLIIIWDI 794 (1915)
Q Consensus 785 ~DG~I~IWdl 794 (1915)
.+|.|.-++-
T Consensus 311 ~~G~i~~~~~ 320 (327)
T 2xbg_A 311 QKGILLRYVT 320 (327)
T ss_dssp STTEEEEECC
T ss_pred CCceEEEEcC
Confidence 8998776653
No 346
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.86 E-value=0.0013 Score=89.08 Aligned_cols=251 Identities=11% Similarity=-0.010 Sum_probs=132.4
Q ss_pred CCCC-CEEEEEEe-CCCCEEEEEeC-CC----cEEEEECCCC-ceEE-EeecCCCCeEEEEeccCccCCCcEEEEEeCC-
Q psy9598 516 GCSG-EISDIAID-NRNILLAAGTV-DK----TIRIWNLQTL-APIS-VLVGHQGIITGVNFCPLEVNGFNYLASTSTD- 585 (1915)
Q Consensus 516 gH~~-~I~~Lafs-pdg~~LaSgs~-Dg----tIrVWDl~tg-~~~~-~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D- 585 (1915)
+|.- .+...+|| |||++||-+.. +| +|+++|+.++ ..+. .+. ....+++|+|+ ++.|+..+.+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspD----g~~l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPD----HTSLFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSS----TTEEEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecC----CCEEEEEEECC
Confidence 3443 67889999 99998875543 22 5999999998 6321 111 12356889984 3666666654
Q ss_pred ----CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC---CCeEEEEEecCCCCCceeEE
Q psy9598 586 ----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG---DHHVRVYKMDGVDSPLGILE 658 (1915)
Q Consensus 586 ----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~---Dg~I~IwDl~~~~~~~~i~~ 658 (1915)
..|.++++.++.......+.. ........+.|+|||++|+..+. ...|.++|+.+......+..
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~---------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 313 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEE---------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI 313 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEEC---------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE
T ss_pred CCCCCEEEEEECCCCchhcEEEEec---------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE
Confidence 257777776653221122210 11234567899999998887653 34678888854311110022
Q ss_pred e-ccCCCCeeEEEEcCCCCEEEEEeCC--C--cEEEEEccC-CceEE-eeecccccCCCCccccccccccccEEEEEECC
Q psy9598 659 V-EEHSDKVDSIQWSHSHLRFVSGSRD--G--TALIWYYKC-SQWRF-IRLDMNTCLPHTKETSDETNKKIKVTMVAWDA 731 (1915)
Q Consensus 659 l-~~h~~~V~sl~fspdg~~L~sgs~D--G--~I~IWDl~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~~va~sp 731 (1915)
+ ....+...++.|+..+.+++.+..+ + .|.++++.+ +.|.. +. + ......+..+.+.
T Consensus 314 l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-------~--------~~~~~~l~~~~~~- 377 (751)
T 2xe4_A 314 VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-------D--------HSEDVFMESIAVR- 377 (751)
T ss_dssp SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-------C--------CCSSEEEEEEEEC-
T ss_pred eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-------C--------CCCCcEEEEEEEE-
Confidence 2 3344556666665444444444443 3 455555543 22111 00 0 0111234455554
Q ss_pred CCCEEEEEEecCCe--EEEEEC-------CCCceEEEeeCC-CCCeEEEEE----ccCCCCEEEEEecC---ceEEEEEC
Q psy9598 732 SDRWVITAINFNFQ--IKIWDA-------FNGDLVQVLKGH-TNEVFVLES----HPFDSRVLLSAGHD---GLIIIWDI 794 (1915)
Q Consensus 732 dg~~L~t~s~~Dg~--I~vwD~-------~tg~~i~~l~gH-~~~V~sl~~----sp~dg~~LaSgs~D---G~I~IWdl 794 (1915)
+..|+.....++. |.++++ .++..+..+... ...+..+.+ ++....++++.+.. +.|.++|+
T Consensus 378 -~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~ 456 (751)
T 2xe4_A 378 -SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSP 456 (751)
T ss_dssp -SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECT
T ss_pred -CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 5566555544775 556665 344413333211 122334433 33334566665543 46777888
Q ss_pred CCCcc
Q psy9598 795 LSSKQ 799 (1915)
Q Consensus 795 ~s~~~ 799 (1915)
.+++.
T Consensus 457 ~~~~~ 461 (751)
T 2xe4_A 457 QDHSR 461 (751)
T ss_dssp TTCCE
T ss_pred CCCcE
Confidence 76654
No 347
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.84 E-value=0.00042 Score=79.62 Aligned_cols=163 Identities=11% Similarity=-0.004 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCEEEEEeCCC--cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 666 VDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 666 V~sl~fspdg~~L~sgs~DG--~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
...|.|+ ++.++++++.+| .|+++|+.+++...... + ........+.+++..|+.+...+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l----------------~~~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-L----------------GKRYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-C----------------CTTCCEEEEEEETTEEEEEESSS
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-c----------------CCccceeEEEEeCCEEEEEEeeC
Confidence 5788898 677777777776 89999999998654321 0 01111111223466777777668
Q ss_pred CeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEc
Q psy9598 744 FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 823 (1915)
Q Consensus 744 g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafS 823 (1915)
+.+.+||..+++.+.++..... -+.++ + ++..|+.+..++.|.++|..+.+. +..+.....+.....+..+.|.
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~e-G~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v--~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDGE-GWGLT--H-NDQYLIMSDGTPVLRFLDPESLTP--VRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSSC-CCCEE--E-CSSCEEECCSSSEEEEECTTTCSE--EEEEECEETTEECCCEEEEEEE
T ss_pred CEEEEEECccCcEEEEEECCCC-ceEEe--c-CCCEEEEECCCCeEEEEcCCCCeE--EEEEEeccCCccccccceeEEE
Confidence 9999999999999999985332 23444 3 445555555578899999998877 5555532222222445567776
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 824 PDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 824 pdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
+|.+.|..-.++.|.+.|..+++....+.
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id 209 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIID 209 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEE
Confidence 78767666677899999999887765543
No 348
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.79 E-value=0.00097 Score=90.16 Aligned_cols=198 Identities=15% Similarity=0.090 Sum_probs=113.2
Q ss_pred CCCC-cEEEEEEc-CCCCEEEEEEC-CC----cEEEEECCCC-cEEE-EEeCCCCCEEEEEEeCCCCEEEEEeCC-----
Q psy9598 474 GHLS-AVFCVLFD-KLGEVIVTGAD-DL----LIKLWRARDG-KLLA-TLRGCSGEISDIAIDNRNILLAAGTVD----- 539 (1915)
Q Consensus 474 gH~~-~V~~vafs-pdg~~LaTGs~-Dg----~I~IWd~~tg-~~~~-~l~gH~~~I~~Lafspdg~~LaSgs~D----- 539 (1915)
+|.. .+...+|| |||++||.+.. +| .|+++|+.+| +.+. .+.. ....++|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCC
Confidence 5554 78889999 99999886543 23 5999999998 6321 1111 13468899999888777665
Q ss_pred CcEEEEECCCCce--EEEee-cCCCCeEEEEeccCccCCCcEEEEEeC---CCeEEEEecccCcccc--ceeccCccccc
Q psy9598 540 KTIRIWNLQTLAP--ISVLV-GHQGIITGVNFCPLEVNGFNYLASTST---DGCIGFWKYKLDIDIS--KTVFHEPVMFN 611 (1915)
Q Consensus 540 gtIrVWDl~tg~~--~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~---DgtI~iWDl~~~~~~~--~~~~~~~~~~~ 611 (1915)
..|.+|++.++.. ...+. .+.....++.|+|+ +.+|+..+. ...|.++|+.++.... ....
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD----g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~------- 315 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD----TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR------- 315 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT----SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS-------
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCC----CCEEEEEecCCCCceEEEEECCCCCCCceeEEee-------
Confidence 3688899987652 23333 23345678899994 466666553 3467778887652111 1110
Q ss_pred cccCCCCCceEEEEECCCCcEEEEEeCC--C--eEEEEEecCCCCCceeEEeccCCC--CeeEEEEcCCCCEEEEEeCCC
Q psy9598 612 ERIRPGNAHILCSSFSPGGLFLATGSGD--H--HVRVYKMDGVDSPLGILEVEEHSD--KVDSIQWSHSHLRFVSGSRDG 685 (1915)
Q Consensus 612 ~~~~~~~~~V~~l~fspdg~~Lasgs~D--g--~I~IwDl~~~~~~~~i~~l~~h~~--~V~sl~fspdg~~L~sgs~DG 685 (1915)
........++.|+.++.+++....+ + .|.++++.+......+ +..|.. .+..+.+. .+.++++...+|
T Consensus 316 ---~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~-~~~lv~~~~~~g 389 (751)
T 2xe4_A 316 ---PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR-SNYLVVAGRRAG 389 (751)
T ss_dssp ---CCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC-SSEEEEEEEETT
T ss_pred ---cCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE-CCEEEEEEEeCC
Confidence 0112344556655555555555443 3 4555565321111110 222333 34555554 334556677788
Q ss_pred cEEEEE
Q psy9598 686 TALIWY 691 (1915)
Q Consensus 686 ~I~IWD 691 (1915)
..+||-
T Consensus 390 ~~~l~~ 395 (751)
T 2xe4_A 390 LTRIWT 395 (751)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 766653
No 349
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.79 E-value=0.039 Score=77.30 Aligned_cols=325 Identities=13% Similarity=0.110 Sum_probs=169.0
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEE-eCCCCCEEEEEEeCC------CCEEEEEeC-CCcEEEEECCC
Q psy9598 478 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDNR------NILLAAGTV-DKTIRIWNLQT 549 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-~gH~~~I~~Lafspd------g~~LaSgs~-DgtIrVWDl~t 549 (1915)
.|.+++.+ +.+|+.++ ++.|.++.+.++.+.... ..-...|.|+++.+. +.++|.|.. |++|+|+++.+
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 45555544 34666665 678888888766433211 123568999999763 469999997 99999999998
Q ss_pred CceEEEeec-CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc--CccccceeccCccccccccCCCCCceEEEEE
Q psy9598 550 LAPISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL--DIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 550 g~~~~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
...+....- ......+|.+.... +..+|..|-.||.+..+.+.. +...... ..+. +..++.-..|
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~--~~~~L~igl~dG~l~~~~~d~~tg~l~d~r---------~~~L-G~~pv~L~~~ 659 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFE--SSHYLLCALGDGALFYFGLNIETGLLSDRK---------KVTL-GTQPTVLRTF 659 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEET--TEEEEEEEETTSEEEEEEECTTTCCEEEEE---------EEEC-CSSCCEEEEE
T ss_pred CCeEEEEECCCCCCCcEEEEEEeC--CCcEEEEEeCCCeEEEEEEcCCCCccccce---------eEEc-CCCceEEEEE
Confidence 776654321 12345555554322 346899999999987666543 2211100 0011 1223333333
Q ss_pred CCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEE-EcCC--CCEEEEEeCCCcEEEEEccCCceEEeeec
Q psy9598 627 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ-WSHS--HLRFVSGSRDGTALIWYYKCSQWRFIRLD 703 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~-fspd--g~~L~sgs~DG~I~IWDl~~~~~~~~~~~ 703 (1915)
...|..-+.+..+....+|.-. ....+..+ ....+.+++ |+.. ..-|+.. .++.++|..+...+.....
T Consensus 660 ~~~~~~~V~a~s~rp~liy~~~---~~l~~s~l--~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~-- 731 (1158)
T 3ei3_A 660 RSLSTTNVFACSDRPTVIYSSN---HKLVFSNV--NLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIR-- 731 (1158)
T ss_dssp ESSSCEEEEEESSSCEEEEESS---SSEEEEEB--SSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEE--
T ss_pred eeCCceeEEEECCCCEEEEEcC---CceEEecc--ChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEE--
Confidence 3333322223333444444321 11111111 112333333 5432 1234433 3456888776432211100
Q ss_pred ccccCCCCccccccccccccEEEEEECCCCCEEEEEEe------------------------------------------
Q psy9598 704 MNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN------------------------------------------ 741 (1915)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~------------------------------------------ 741 (1915)
.......+..++++|....++++..
T Consensus 732 -------------~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1158)
T 3ei3_A 732 -------------TVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 798 (1158)
T ss_dssp -------------EEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC---------
T ss_pred -------------EEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchh
Confidence 0001123344444444333222211
Q ss_pred ------cCCeEEEEECCCCceEEEeeCC-CCCeEEEEEccC---CCCEEEEEe----------cCceEEEEECCCCcccc
Q psy9598 742 ------FNFQIKIWDAFNGDLVQVLKGH-TNEVFVLESHPF---DSRVLLSAG----------HDGLIIIWDILSSKQRG 801 (1915)
Q Consensus 742 ------~Dg~I~vwD~~tg~~i~~l~gH-~~~V~sl~~sp~---dg~~LaSgs----------~DG~I~IWdl~s~~~~~ 801 (1915)
.-+.|++.|..+++.+..+.-. ...+.+++.... ...+|+.|. ..|.|.+|++..++.
T Consensus 799 ~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-- 876 (1158)
T 3ei3_A 799 SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-- 876 (1158)
T ss_dssp -CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE--
T ss_pred hcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE--
Confidence 0135888888888877766532 334555553322 246888776 358999999974433
Q ss_pred ceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 802 YKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 802 ~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
..+. .....++|++++-- +|.+||+.+ ..|+||++...+
T Consensus 877 -~lv~---~~~v~g~v~al~~~-~g~Lla~ig--~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 877 -QTVA---EKEVKGAVYSMVEF-NGKLLASIN--STVRLYEWTTEK 915 (1158)
T ss_dssp -EEEE---EEEESSCEEEEEEE-TTEEEEEET--TEEEEEEECTTS
T ss_pred -EEEE---EEEcCCcCEEEeee-CCEEEEEcC--CEEEEEECCCCc
Confidence 2222 11235778877633 454444333 589999998654
No 350
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.77 E-value=0.0061 Score=75.41 Aligned_cols=239 Identities=13% Similarity=-0.042 Sum_probs=147.4
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 522 SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 522 ~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
+|.+..+.+ +|+.+. ...|+.+++........+. ....+..|+|.+. ++.++++-...+.|..|++.+.... .
T Consensus 80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~---~~~ly~~D~~~~~I~r~~~~g~~~~-~ 152 (386)
T 3v65_B 80 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHR---RELVFWSDVTLDRILRANLNGSNVE-E 152 (386)
T ss_dssp CEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCCEE-E
T ss_pred eECCccccc-eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecC---CCeEEEEeCCCCcEEEEecCCCCcE-E
Confidence 345555533 444333 3578889988766554444 3455789999973 3456666667788999988765311 1
Q ss_pred eeccCccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEE
Q psy9598 602 TVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 680 (1915)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~s 680 (1915)
+ .. ........+++.+. +.++++-...+.|.++++++.. ....+.........|++.|.+..|+.
T Consensus 153 ~-~~----------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~---~~~l~~~~l~~P~giavdp~~g~ly~ 218 (386)
T 3v65_B 153 V-VS----------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---RKVLLWQSLEKPRAIALHPMEGTIYW 218 (386)
T ss_dssp E-EC----------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---CEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred E-Ee----------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---eEEeecCCCCCCcEEEEEcCCCeEEE
Confidence 1 00 11123456888874 4555566667888888875322 11222333456789999987665554
Q ss_pred Ee-CC-CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 681 GS-RD-GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 681 gs-~D-G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
+. .. +.|..+++.......+. .......+.|+|++++..|+.+....+.|..+++.......
T Consensus 219 td~~~~~~I~r~~~dG~~~~~~~----------------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~ 282 (386)
T 3v65_B 219 TDWGNTPRIEASSMDGSGRRIIA----------------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA 282 (386)
T ss_dssp EECSSSCEEEEEETTSCSCEEEE----------------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEE
T ss_pred eccCCCCEEEEEeCCCCCcEEEE----------------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEE
Confidence 44 33 56777776543321111 01123467899999888888888768899999986544444
Q ss_pred EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 759 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 759 ~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
.+........+|++. .+.++++-...+.|..++..++..
T Consensus 283 ~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 283 VISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp EECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEECCCCCceEEEEE--CCEEEEeeCCCCeEEEEECCCCcc
Confidence 444444556778873 466777777788888888666655
No 351
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.76 E-value=0.03 Score=73.46 Aligned_cols=343 Identities=10% Similarity=-0.067 Sum_probs=185.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCcE-EEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCc
Q psy9598 475 HLSAVFCVLFDKLGEVIVTGA-DDLLIKLWRARDGKL-LATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaTGs-~Dg~I~IWd~~tg~~-~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg~ 551 (1915)
....+..|+|++.+..|+.+. ..+.|..+++..... ...+...-.....|++...+. ++++-...+.|.+.++....
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence 346688999998766666554 467899999865532 233433335789999999555 45555567899999997654
Q ss_pred eEEEeecCCCCeEEEEeccCccCCCcEEEEEeC--CCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 552 ~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~--DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
....+........+|++.|.. ..|+.+.. .+.|...++..... ..+ .. ..-.....++++++
T Consensus 118 ~~~l~~~~l~~P~~Iavdp~~----g~ly~tD~g~~~~I~r~~~dG~~~-~~l-~~----------~~~~~P~Glald~~ 181 (619)
T 3s94_A 118 RKVLFWQELDQPRAIALDPSS----GFMYWTDWGEVPKIERAGMDGSSR-FII-IN----------SEIYWPNGLTLDYE 181 (619)
T ss_dssp CEEEECSSCSCCCCEEEETTT----TEEEEEECSSSCEEEEEETTSCSC-EEE-EC----------SSCSSEEEEEEETT
T ss_pred EEEEEeCCCCCCceEEEecCC----CeEEEeccCCCCEEEEEECCCCce-EEE-Ee----------CCCCCCcEEEEEcc
Confidence 433343445567889998843 34444432 35666666553321 111 10 11245788999986
Q ss_pred CcEEEEE-eCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeeccccc-
Q psy9598 630 GLFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC- 707 (1915)
Q Consensus 630 g~~Lasg-s~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~- 707 (1915)
+..|..+ ...+.|..+++++..... + ..+......+|++..+ ..+++-...+.|...|..++............
T Consensus 182 ~~~LY~aD~~~~~I~~~~~dG~~~~~-~--~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p 257 (619)
T 3s94_A 182 EQKLYWADAKLNFIHKSNLDGTNRQA-V--VKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSP 257 (619)
T ss_dssp TTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCC
T ss_pred CCEEEEEeCCCCeEEEecCCCCccEE-E--EeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCC
Confidence 5555444 456788888885432211 1 1111223356677655 44555556778888888766532221100000
Q ss_pred ----------CC-CCccccccc----------cccccEEEEEE-----CCC--------CCEEEEEEecCCeEEEEECCC
Q psy9598 708 ----------LP-HTKETSDET----------NKKIKVTMVAW-----DAS--------DRWVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 708 ----------~~-~~~~~~~~~----------~~~~~V~~va~-----spd--------g~~L~t~s~~Dg~I~vwD~~t 753 (1915)
.+ ......... .......|.|- .++ ..+|+.+. .+.|+..++..
T Consensus 258 ~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~--~~~i~~i~l~~ 335 (619)
T 3s94_A 258 MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR--RTDLRRISLDT 335 (619)
T ss_dssp SEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE--SSCEEEEESSS
T ss_pred cEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc--ccceEEEecCC
Confidence 00 000000000 00001122221 111 12444443 45677777765
Q ss_pred CceE-EEee-CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEE
Q psy9598 754 GDLV-QVLK-GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 831 (1915)
Q Consensus 754 g~~i-~~l~-gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Las 831 (1915)
.... ..+. ..-..+.+|+|.+.++.++++-...+.|+.+++..... . .+. ....+....+++...+..|..
T Consensus 336 ~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~--~-~v~----~~~~~~p~GlAvD~~~~~lY~ 408 (619)
T 3s94_A 336 PDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS--Q-FVV----TAQIAHPDGIAVDWVARNLYW 408 (619)
T ss_dssp TTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--E-EEE----CSSCSCCCEEEEETTTTEEEE
T ss_pred CccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc--E-EEE----ECCCCCcCceEEecccCcEEE
Confidence 4321 1121 12235788999985566666666688999999876443 1 111 123356778999875555555
Q ss_pred E-eCCCeEEEEeCCCC
Q psy9598 832 T-DSYGHLLVYGLGGF 846 (1915)
Q Consensus 832 g-~~dG~I~Iwdl~s~ 846 (1915)
+ ...+.|.+.++.+.
T Consensus 409 tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 409 TDTGTDRIEVTRLNGT 424 (619)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred EeCCCCcEEEEeCCCC
Confidence 5 45688999998765
No 352
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.76 E-value=0.029 Score=78.64 Aligned_cols=322 Identities=13% Similarity=0.091 Sum_probs=169.2
Q ss_pred CCcEEEEEEcCC------CCEEEEEEC-CCcEEEEECCCCcEEEEEeC-CCCCEEEEEEe--CCCCEEEEEeCCCcEEEE
Q psy9598 476 LSAVFCVLFDKL------GEVIVTGAD-DLLIKLWRARDGKLLATLRG-CSGEISDIAID--NRNILLAAGTVDKTIRIW 545 (1915)
Q Consensus 476 ~~~V~~vafspd------g~~LaTGs~-Dg~I~IWd~~tg~~~~~l~g-H~~~I~~Lafs--pdg~~LaSgs~DgtIrVW 545 (1915)
.+.|.|+++.+. +.++|.|.. |++|+|+++.+.+.+....- ......+|.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 479999997 99999999998776654332 12234444443 234588999999987655
Q ss_pred EC--CCCceEEE---eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCc
Q psy9598 546 NL--QTLAPISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 620 (1915)
Q Consensus 546 Dl--~tg~~~~~---l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1915)
.+ .+|..... +.| ..+|.-..|... +...++++|..-.+. +... +. +.+. +..+ ..-
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~---~~~~V~a~s~rp~li-y~~~-~~----l~~s-~l~~-------~~v 694 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSL---STTNVFACSDRPTVI-YSSN-HK----LVFS-NVNL-------KEV 694 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESS---SCEEEEEESSSCEEE-EESS-SS----EEEE-EBSS-------SCC
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeC---CceeEEEECCCCEEE-EEcC-Cc----eEEe-ccCh-------HHh
Confidence 44 45554332 223 334443334321 223444444333333 3222 11 1111 0000 011
Q ss_pred eEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-------------
Q psy9598 621 ILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG------------- 685 (1915)
Q Consensus 621 V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG------------- 685 (1915)
-....|+.. ..-++..+ ++.++|..+.... ...+..+ .-...+..|+++|....++.+..+.
T Consensus 695 ~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~-~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~ 771 (1158)
T 3ei3_A 695 NYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ-KLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALR 771 (1158)
T ss_dssp CEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS-SEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESS
T ss_pred ceEeccCcccCCCcEEEEc-CCceEEEEecccC-CeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccccchhh
Confidence 233445432 12344333 4569998885432 2223222 2345788899999887766554321
Q ss_pred ------------------------------------cEEEEEccCCceEEeeecccccCCCCccccccccccccEEE---
Q psy9598 686 ------------------------------------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM--- 726 (1915)
Q Consensus 686 ------------------------------------~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--- 726 (1915)
.|++.|..+.+.. ..........+.+
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i---------------~~~~l~~nE~~~sv~~ 836 (1158)
T 3ei3_A 772 PSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVL---------------HAHQFLQNEYALSLVS 836 (1158)
T ss_dssp CCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEE---------------EEEECCTTEEEEEEEE
T ss_pred hhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEE---------------EEEeCCCCcceEEEEE
Confidence 1112211111100 0000111122333
Q ss_pred EEECCC-CCEEEEEEe---------cCCeEEEEECCCCceEEEee-CCCCCeEEEEEccCCCCEEEEEecCceEEEEECC
Q psy9598 727 VAWDAS-DRWVITAIN---------FNFQIKIWDAFNGDLVQVLK-GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 795 (1915)
Q Consensus 727 va~spd-g~~L~t~s~---------~Dg~I~vwD~~tg~~i~~l~-gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~ 795 (1915)
+.|..+ ..+|++|+. ..|.|.+|++..+++..... ...++|++|+-- .|.+|++. ...|+||++.
T Consensus 837 v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~ 912 (1158)
T 3ei3_A 837 CKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTVRLYEWT 912 (1158)
T ss_dssp ECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEEEEEEEC
T ss_pred EEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEEEEEECC
Confidence 334332 467887763 25789999987544322221 346788888754 35444433 4689999997
Q ss_pred CCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy9598 796 SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 844 (1915)
Q Consensus 796 s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~ 844 (1915)
..+. +. ... .....|..+.....|++|++|+.-..|.++.+.
T Consensus 913 ~~~~--L~-~~~----~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 913 TEKE--LR-TEC----NHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 954 (1158)
T ss_dssp TTSC--EE-EEE----EECCCSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred CCce--EE-EEe----eccccEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence 6654 33 211 111123333333468899999988888777654
No 353
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.76 E-value=0.0043 Score=70.66 Aligned_cols=196 Identities=11% Similarity=0.023 Sum_probs=118.7
Q ss_pred eeeEEecCCC--CcEEEEEEcCCCCEEEEEECC--CcEEEEECCCCcEEEEEeCCCCCE-EEEEEeCCCCEEEEEeCCCc
Q psy9598 467 RQHYVNLGHL--SAVFCVLFDKLGEVIVTGADD--LLIKLWRARDGKLLATLRGCSGEI-SDIAIDNRNILLAAGTVDKT 541 (1915)
Q Consensus 467 ~~~~~l~gH~--~~V~~vafspdg~~LaTGs~D--g~I~IWd~~tg~~~~~l~gH~~~I-~~Lafspdg~~LaSgs~Dgt 541 (1915)
+++..+ -|. .-+..+.|+. +.++.+.+.+ +.|+++|+.+|+.+..+....... -.+++.. +.+.+....++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCE
Confidence 344444 444 3355889986 5555666654 489999999999999886433221 2344432 334444456899
Q ss_pred EEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCce
Q psy9598 542 IRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 621 (1915)
Q Consensus 542 IrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V 621 (1915)
+.+||..+++.+.++.... .=+.+++ ++..|+.+..++.|.++|..+...+..+....... + -..+
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gwglt~------dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~------~-~~~l 152 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGWALTS------DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR------P-LDNL 152 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEEE------CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE------E-CCCE
T ss_pred EEEEECCcCcEEEEEeCCC-CceEEee------CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc------c-cccc
Confidence 9999999999999887433 2245543 23555555668899999999887655554431000 0 0234
Q ss_pred EEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe--cc-----------CCCCeeEEEEcCCCCEEEEEeC
Q psy9598 622 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV--EE-----------HSDKVDSIQWSHSHLRFVSGSR 683 (1915)
Q Consensus 622 ~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l--~~-----------h~~~V~sl~fspdg~~L~sgs~ 683 (1915)
+.+.+. +|...+....+..|.+.|..+. ..+..+ .+ ...-.++|+|+|++..|++.+.
T Consensus 153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 153 NELEWV-NGELLANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eeeEEe-CCEEEEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 455554 5554544445667778777332 222222 11 1235689999998776666554
No 354
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.75 E-value=0.0073 Score=74.67 Aligned_cols=254 Identities=10% Similarity=-0.016 Sum_probs=150.6
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceEEEee
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLV 557 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~tg~~~~~l~ 557 (1915)
.+|.+..+.+ +|+.+. ...|+.+++..+.....+.+ ...+..|+|++.+..| ++-...+.|..|++..+.....+.
T Consensus 79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCccccc-eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 4466666644 444443 35788899877665544443 3458899999765544 555567889999998765544444
Q ss_pred cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe
Q psy9598 558 GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS 637 (1915)
Q Consensus 558 ~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs 637 (1915)
........|++.+. ++.++++-...+.|.+.++..... ..... ........++++|.+..|+...
T Consensus 156 ~~~~~p~glavd~~---~g~lY~~d~~~~~I~~~~~dg~~~--~~l~~----------~~l~~P~giavdp~~g~ly~td 220 (386)
T 3v65_B 156 TGLESPGGLAVDWV---HDKLYWTDSGTSRIEVANLDGAHR--KVLLW----------QSLEKPRAIALHPMEGTIYWTD 220 (386)
T ss_dssp SSCSCCCCEEEETT---TTEEEEEETTTTEEEECBTTSCSC--EEEEC----------SSCSCEEEEEEETTTTEEEEEE
T ss_pred CCCCCccEEEEEeC---CCeEEEEcCCCCeEEEEeCCCCce--EEeec----------CCCCCCcEEEEEcCCCeEEEec
Confidence 33345577888763 345666666678888888764421 11111 1224568899998665555443
Q ss_pred -CC-CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCccc
Q psy9598 638 -GD-HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 714 (1915)
Q Consensus 638 -~D-g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~ 714 (1915)
.. +.|..+++++.. .. ......-.....|+|++++..|+.+ +..+.|..+++.......+..
T Consensus 221 ~~~~~~I~r~~~dG~~--~~-~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~------------ 285 (386)
T 3v65_B 221 WGNTPRIEASSMDGSG--RR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS------------ 285 (386)
T ss_dssp CSSSCEEEEEETTSCS--CE-EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC------------
T ss_pred cCCCCEEEEEeCCCCC--cE-EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE------------
Confidence 34 678888875422 11 1122334457899999766655544 556778888876433221110
Q ss_pred cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEE
Q psy9598 715 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771 (1915)
Q Consensus 715 ~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~ 771 (1915)
........|++ ++..|+.+....+.|..++..+|..+..+.........|+
T Consensus 286 ----~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 336 (386)
T 3v65_B 286 ----QGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336 (386)
T ss_dssp ----SSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred ----CCCCCceEEEE--ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence 01223456666 3345555555578899998777777766654333333333
No 355
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.73 E-value=0.00096 Score=76.67 Aligned_cols=183 Identities=10% Similarity=-0.017 Sum_probs=117.4
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEE--EEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEe
Q psy9598 479 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEIS--DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 556 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~--~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l 556 (1915)
...+.|+ ++.++++.+.+|.|+++|+.+|+.+..+ -. .... .|++.. +.+.++...++.+.+||..+++.+.++
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 4678888 4667777778889999999999988777 22 2333 355543 344444556899999999999999988
Q ss_pred ecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEE
Q psy9598 557 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 636 (1915)
Q Consensus 557 ~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasg 636 (1915)
... ..-+.+++ ++..|+.+..++.|.++|..+.+.+..+....... .-..++.+.|. +|...+..
T Consensus 133 ~~~-~eGwGLt~------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-------~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 133 RYS-GEGWGLCY------WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-------PVELINELECA-NGVIYANI 197 (268)
T ss_dssp ECS-SCCCCEEE------ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE-------ECCCEEEEEEE-TTEEEEEE
T ss_pred eCC-CceeEEec------CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc-------ccccccccEEe-CCEEEEEE
Confidence 743 22244443 23566666678999999999887655554431000 01235566666 66655555
Q ss_pred eCCCeEEEEEecCCCCCceeEEecc-------------CCCCeeEEEEcCCCCEEEEEeC
Q psy9598 637 SGDHHVRVYKMDGVDSPLGILEVEE-------------HSDKVDSIQWSHSHLRFVSGSR 683 (1915)
Q Consensus 637 s~Dg~I~IwDl~~~~~~~~i~~l~~-------------h~~~V~sl~fspdg~~L~sgs~ 683 (1915)
..+..|.+.|..+. ..+..+.. -..-.+.|+|+|++..|++.+.
T Consensus 198 w~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 198 WHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 46778888887432 22222211 1235689999998765555443
No 356
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.73 E-value=0.031 Score=66.89 Aligned_cols=237 Identities=11% Similarity=-0.029 Sum_probs=140.4
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCC----CceEEEeecCCCCeE
Q psy9598 490 VIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQT----LAPISVLVGHQGIIT 564 (1915)
Q Consensus 490 ~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~L-aSgs~DgtIrVWDl~t----g~~~~~l~~h~~~V~ 564 (1915)
+|+.+.. ..|+..++.+......+. ....+..++|++.+..| ++-...+.|..+++.+ ......+........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 3444433 468999998876655554 34567899999865544 5555678999999876 222223333334567
Q ss_pred EEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-C-CeE
Q psy9598 565 GVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-D-HHV 642 (1915)
Q Consensus 565 sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-D-g~I 642 (1915)
+|++.+. ++.++++-...+.|.++++..... ..+ .. ........++++|.+..|+.+.. . +.|
T Consensus 81 glavd~~---~~~ly~~d~~~~~I~~~~~~g~~~-~~~-~~----------~~~~~P~~iavdp~~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 81 GLAVDWI---HSNIYWTDSVLGTVSVADTKGVKR-KTL-FR----------ENGSKPRAIVVDPVHGFMYWTDWGTPAKI 145 (316)
T ss_dssp EEEEETT---TTEEEEEETTTTEEEEEETTSSSE-EEE-EE----------CTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred EEEEeec---CCeEEEEECCCCEEEEEeCCCCce-EEE-EE----------CCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence 8888763 235666667788999998865421 111 11 11245688999986555554443 3 688
Q ss_pred EEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCcccccccccc
Q psy9598 643 RVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 721 (1915)
Q Consensus 643 ~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1915)
..+++++.. ... .....-.....|+|++++..|+.+ +..+.|..+|+.......+.. . ....
T Consensus 146 ~~~~~dG~~--~~~-~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~-~-------------~~~~ 208 (316)
T 1ijq_A 146 KKGGLNGVD--IYS-LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-D-------------EKRL 208 (316)
T ss_dssp EEEETTSCC--EEE-EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-C-------------TTTT
T ss_pred EEEcCCCCC--eEE-EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEee-c-------------CCcc
Confidence 888874322 111 112233567899999877666554 456789999987543222110 0 0011
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
.....+++. +..|+.+....+.|..++..+|+.+..+..
T Consensus 209 ~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 209 AHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp SSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred CCcEEEEEE--CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence 234556664 345665655578999999888876666643
No 357
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.72 E-value=0.0054 Score=70.82 Aligned_cols=211 Identities=9% Similarity=0.105 Sum_probs=132.1
Q ss_pred EEecCCCCcEEEEEEcCCCCEEE-EEECCCcEEEEECCCCcEEEEEe-CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q psy9598 470 YVNLGHLSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLR-GCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 547 (1915)
Q Consensus 470 ~~l~gH~~~V~~vafspdg~~La-TGs~Dg~I~IWd~~tg~~~~~l~-gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl 547 (1915)
+.|.|=.+.+..++|+|++..|+ +...++.|...|+. |+.+..+. +-....-.|++.+++.++++.-.++.|.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 46777778899999999766555 46678899999987 88888774 22356788999999887777656788999988
Q ss_pred CCCce---EEEee------cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 548 QTLAP---ISVLV------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 548 ~tg~~---~~~l~------~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
..... +.... .+.....+|+|.|.. +.|+++.......+|.+..-.....+.......+.. ....
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~----~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~--~~~~ 172 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD----HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR--QFTL 172 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT----TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH--TCCS
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCC----CEEEEEECcCCceEEEEcccccCCceeeecchhhcc--cccc
Confidence 65442 22221 123456899999943 566666665556666654210000011000000000 0112
Q ss_pred CceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEecc-C------CCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy9598 619 AHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-H------SDKVDSIQWSHSHLRFVSGSRDGTALIW 690 (1915)
Q Consensus 619 ~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~-h------~~~V~sl~fspdg~~L~sgs~DG~I~IW 690 (1915)
..+.+++++|. +.+++.......|.++|..+ .......+.. . -..--.|+|.++|+++++ +.-..+.+|
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 45688999995 55666667778888898743 2333444442 1 125689999999985555 565555444
No 358
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.70 E-value=0.015 Score=67.03 Aligned_cols=221 Identities=11% Similarity=0.018 Sum_probs=134.6
Q ss_pred EEeCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEE
Q psy9598 513 TLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 590 (1915)
Q Consensus 513 ~l~gH~~~I~~Lafspdg~~La-Sgs~DgtIrVWDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~i 590 (1915)
.+.|-...+..|+|+|++..|+ +...++.|...|+. +..+..+. +-....-.|++.+ ++.++++.-.++.+.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~----~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG----DNQFVISDERDYAIYV 95 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS----TTEEEEEETTTTEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC----CCEEEEEECCCCcEEE
Confidence 4567777899999999866554 56678899999998 88877764 2235678888876 4466666667788999
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEe-------ccCC
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV-------EEHS 663 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l-------~~h~ 663 (1915)
+++.....+...... .+.......+...-.++|+|.+..|+++.......||.+++......+..+ ..+.
T Consensus 96 ~~v~~~~~i~~~~~~---~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 96 ISLTPNSEVKILKKI---KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEECTTCCEEEEEEE---ECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEcCCCCeeeeeeee---ccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 988765431111111 000011234566899999999877777776666667776432111111111 1134
Q ss_pred CCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 664 DKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 664 ~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
..+.+|+++|... +++.+.....|.++|..... +... .+.... .........--.|+|+++|+. ++++.
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-~~~~-~L~~g~------~~l~~~~~qpEGia~d~~G~l-yIvsE- 242 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-IGEM-SLTKGS------RGLSHNIKQAEGVAMDASGNI-YIVSE- 242 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-EEEE-ECSTTG------GGCSSCCCSEEEEEECTTCCE-EEEET-
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-EEEE-EcCCcc------CCcccccCCCCeeEECCCCCE-EEEcC-
Confidence 4678999998755 45555566778888876542 2211 111100 011112345677999999974 44455
Q ss_pred CCeEEEEEC
Q psy9598 743 NFQIKIWDA 751 (1915)
Q Consensus 743 Dg~I~vwD~ 751 (1915)
.+.+++|.-
T Consensus 243 ~n~~y~f~~ 251 (255)
T 3qqz_A 243 PNRFYRFTP 251 (255)
T ss_dssp TTEEEEEEC
T ss_pred CceEEEEEe
Confidence 566777654
No 359
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.63 E-value=0.00079 Score=77.35 Aligned_cols=164 Identities=10% Similarity=-0.039 Sum_probs=112.8
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy9598 665 KVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 744 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg 744 (1915)
....|.|+ ++.++++++.+|.|+++|+.+++..... +. ...-.-.+++ ++..|+.+...++
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~--------------~~~FgeGit~--~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RL--------------GNIFAEGLAS--DGERLYQLTWTEG 116 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--EC--------------TTCCEEEEEE--CSSCEEEEESSSC
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CC--------------CCcceeEEEE--eCCEEEEEEccCC
Confidence 35788887 4667778888899999999998854322 10 0001112344 4556666666689
Q ss_pred eEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcC
Q psy9598 745 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 824 (1915)
Q Consensus 745 ~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSp 824 (1915)
.+.+||..+++.+.++.... .-+.|++ ++..|+.+..++.|.++|..+.+. +..+.....+.....+..+.|.
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~-eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v--~~~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSG-EGWGLCY---WNGKLVRSDGGTMLTFHEPDGFAL--VGAVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCCEEE---ETTEEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-
T ss_pred EEEEEECCcCcEEEEEeCCC-ceeEEec---CCCEEEEECCCCEEEEEcCCCCeE--EEEEEeCCCCcccccccccEEe-
Confidence 99999999999999998532 2245553 556666666688999999999887 6665533333333456777877
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCcccccCCC
Q psy9598 825 DGTTCALTDSYGHLLVYGLGGFKRPQNIPR 854 (1915)
Q Consensus 825 dg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~ 854 (1915)
+|.++|..-.++.|.+.|..+++....+..
T Consensus 190 dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 190 NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 777666666778999999999887765543
No 360
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.60 E-value=0.026 Score=67.66 Aligned_cols=231 Identities=9% Similarity=-0.078 Sum_probs=136.2
Q ss_pred CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEecCCCC-CceeEEeccCC
Q psy9598 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDS-PLGILEVEEHS 663 (1915)
Q Consensus 586 gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~-~Lasgs~Dg~I~IwDl~~~~~-~~~i~~l~~h~ 663 (1915)
..|+..|+.+....... .....+..++|++.+. ++++....+.|..+++.+... ......+....
T Consensus 10 ~~I~~i~~~~~~~~~~~-------------~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI-------------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp SSEEEEETTSCCCEEEE-------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred CeEEEEECCCcceEehh-------------cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 45888888765421111 1124578999998654 555555678999999854110 01111122233
Q ss_pred CCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy9598 664 DKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 742 (1915)
Q Consensus 664 ~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~ 742 (1915)
....+|++.+.+. ++++-...+.|.++++.......+.. ........++++|.+.+|+.+...
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----------------~~~~~P~~iavdp~~g~ly~~d~~ 140 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWG 140 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE----------------CTTCCEEEEEEETTTTEEEEEECS
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE----------------CCCCCcceEEeCCCCCEEEEEccC
Confidence 4567899986544 45555677889999887543222110 012345789999988877777653
Q ss_pred C-CeEEEEECCCCceEEEe-eCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEE
Q psy9598 743 N-FQIKIWDAFNGDLVQVL-KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDG 820 (1915)
Q Consensus 743 D-g~I~vwD~~tg~~i~~l-~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~v 820 (1915)
. +.|..+++. |.....+ ...-.....|++++..+.++++-+..+.|..+|+..... ..+.. ..........+
T Consensus 141 ~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~---~~~~~--~~~~~~~P~gi 214 (316)
T 1ijq_A 141 TPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILE--DEKRLAHPFSL 214 (316)
T ss_dssp SSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEE--CTTTTSSEEEE
T ss_pred CCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce---EEEee--cCCccCCcEEE
Confidence 3 689888875 4444433 233456789999984455555556678999999975332 22221 11122345677
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCcccccC
Q psy9598 821 KWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 821 afSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l 852 (1915)
++. .+.++++-...+.|..++..+++....+
T Consensus 215 av~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 215 AVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 774 3455555556778999988766654443
No 361
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.58 E-value=0.014 Score=73.11 Aligned_cols=252 Identities=9% Similarity=-0.032 Sum_probs=135.9
Q ss_pred CEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeC-CC----eEEEEec
Q psy9598 520 EISDIAIDN-RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST-DG----CIGFWKY 593 (1915)
Q Consensus 520 ~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~-Dg----tI~iWDl 593 (1915)
....|+|+| ++..|+.+...+.|+++|+.++.... +.........|+|++. +++|+.+.. ++ .+.+++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~----G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHE----ADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTT----SSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCC----CCEEEEEeCCCCcccceEEEEeC
Confidence 457899998 35556665555889999998766444 3334566889999984 365555543 22 2333332
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEc
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs 672 (1915)
.+.......+. ......+++++| +|.++++-..++.|..|+..+.. ...+.... .......|+|+
T Consensus 213 -~g~~~~~~~l~-----------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~-~~~~~~~~-~~~~P~gia~~ 278 (430)
T 3tc9_A 213 -ESGFKVITELT-----------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE-TTPLFTIQ-DSGWEFHIQFH 278 (430)
T ss_dssp -GGTSCSEEEEE-----------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE-EEEEEECS-SSSCCEEEEEC
T ss_pred -CCceeeeeeec-----------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-EEEEEEcC-CCCcceeEEEc
Confidence 22211000000 013356788999 67777776678899999984321 11122221 22456789999
Q ss_pred CCCCE-EEEEeCCCcEEEEEccCC--ce--EEeeecccccCCCCccccccccccccEE-EEEEC--------CCCCEEEE
Q psy9598 673 HSHLR-FVSGSRDGTALIWYYKCS--QW--RFIRLDMNTCLPHTKETSDETNKKIKVT-MVAWD--------ASDRWVIT 738 (1915)
Q Consensus 673 pdg~~-L~sgs~DG~I~IWDl~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~va~s--------pdg~~L~t 738 (1915)
|+|++ +++-...+.|..++.... .. ........ ..............-.... .+++. ++| .|++
T Consensus 279 pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyv 356 (430)
T 3tc9_A 279 PSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQ-GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYF 356 (430)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECT-TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEE
T ss_pred CCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccC-CCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEE
Confidence 99995 455556788999887642 11 00110000 0000000000000111222 45553 334 4555
Q ss_pred EEecCCeEEEEECCCCceEEEeeCC---------C---------CCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 739 AINFNFQIKIWDAFNGDLVQVLKGH---------T---------NEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 739 ~s~~Dg~I~vwD~~tg~~i~~l~gH---------~---------~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+....+.|+.++ .+|...... +. . .....|++.|.++.++++-...+.|+.+++
T Consensus 357 aD~~n~~I~~i~-~~G~v~~~~-g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 357 CDRENHCIRILT-PQGRVTTFA-GRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEGGGTEEEEEC-TTSEEEEEE-ECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EECCCcEEEEEC-CCCcEEEEE-eCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 555478899998 356443333 21 1 146788888733555555555667777665
No 362
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.56 E-value=0.027 Score=71.09 Aligned_cols=275 Identities=10% Similarity=0.000 Sum_probs=148.5
Q ss_pred cEEEEEEcC-C-CCEEEEEECCCcEEEEECCCCcEEEEEeCC---CCCEEEEEE-------eCCCCEEEEEeCCC-----
Q psy9598 478 AVFCVLFDK-L-GEVIVTGADDLLIKLWRARDGKLLATLRGC---SGEISDIAI-------DNRNILLAAGTVDK----- 540 (1915)
Q Consensus 478 ~V~~vafsp-d-g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH---~~~I~~Laf-------spdg~~LaSgs~Dg----- 540 (1915)
....|+|+| + ++++++....+.|++.|+.++.+...+... ......|+| +++|.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 3 444444444567999999887766555432 235899999 99999666665443
Q ss_pred --cEEEEECCC-CceE-----EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecc-------cCccccceecc
Q psy9598 541 --TIRIWNLQT-LAPI-----SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK-------LDIDISKTVFH 605 (1915)
Q Consensus 541 --tIrVWDl~t-g~~~-----~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~-------~~~~~~~~~~~ 605 (1915)
.|.+.+... +... ..+.. -....+++++|. ++.++++-..++.|..+|+. ++.........
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~---~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPI---NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTT---TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCC---CCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 266665443 2221 22221 123457788873 35667777788899999987 44320000000
Q ss_pred Ccccccc-ccCCCCCceEEEEECCCCcE-EEEEeCCCeEEEEEecCCCCC----ceeEEeccCC------------CCee
Q psy9598 606 EPVMFNE-RIRPGNAHILCSSFSPGGLF-LATGSGDHHVRVYKMDGVDSP----LGILEVEEHS------------DKVD 667 (1915)
Q Consensus 606 ~~~~~~~-~~~~~~~~V~~l~fspdg~~-Lasgs~Dg~I~IwDl~~~~~~----~~i~~l~~h~------------~~V~ 667 (1915)
..-.+.. ...+.....+.++|+|+|++ +++-+..+.|+.++.+..... ..+.-..+.. ....
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 0000000 00122345679999999995 455566788999887542211 1111110111 1233
Q ss_pred -EEEEc-------CCCCEEEEEeCCCcEEEEEccCCceEEeeeccccc------CC-CCccc-cccccccccEEEEEECC
Q psy9598 668 -SIQWS-------HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC------LP-HTKET-SDETNKKIKVTMVAWDA 731 (1915)
Q Consensus 668 -sl~fs-------pdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~------~~-~~~~~-~~~~~~~~~V~~va~sp 731 (1915)
.++.. .+|.++++-+..+.|+.++. .+.... ....... .. +...- ......-.....|++++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~T-iaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVST-YAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEE-EEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEE-EecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 44554 45666677677788888873 443222 1111000 00 00000 01111234567899999
Q ss_pred CCCEEEEEEecCCeEEEEECCCCceEE
Q psy9598 732 SDRWVITAINFNFQIKIWDAFNGDLVQ 758 (1915)
Q Consensus 732 dg~~L~t~s~~Dg~I~vwD~~tg~~i~ 758 (1915)
++..|+++...++.|+.+++....+++
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 755666666658899999887655544
No 363
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.56 E-value=0.0043 Score=70.66 Aligned_cols=165 Identities=13% Similarity=-0.031 Sum_probs=109.2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCC--cEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 741 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG--~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~ 741 (1915)
.....|.|+. +.++.+++.+| .|+++|+.+++......- + .......+...+..|+....
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-----~------------~~~fgeGi~~~~~~ly~ltw 82 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-----P------------PPYFGAGIVAWRDRLIQLTW 82 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-----C------------TTCCEEEEEEETTEEEEEES
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-----C------------CCcceeEEEEeCCEEEEEEe
Confidence 3467899986 55666666654 899999999986543210 0 01111112223566777776
Q ss_pred cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEE
Q psy9598 742 FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGK 821 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~va 821 (1915)
.++.+.+||..+++.+.++..... -+.|++ ++..|+.+..++.|.++|..+.+. +..+.....+.....+..+.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~--~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGE-GWALTS---DDSHLYMSDGTAVIRKLDPDTLQQ--VGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSC-CCEEEE---CSSCEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEE
T ss_pred eCCEEEEEECCcCcEEEEEeCCCC-ceEEee---CCCEEEEECCCCeEEEEeCCCCeE--EEEEEEccCCcccccceeeE
Confidence 699999999999999999984432 245553 444444445588999999999877 66655333333334566677
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 822 WSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 822 fSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
|. +|..+|..-.+..|.+.|..+++....+.
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 66 77766666567799999999888765554
No 364
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.54 E-value=0.021 Score=71.69 Aligned_cols=253 Identities=8% Similarity=-0.001 Sum_probs=134.5
Q ss_pred CEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCC---Ce-EEEEec
Q psy9598 520 EISDIAIDNR--NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---GC-IGFWKY 593 (1915)
Q Consensus 520 ~I~~Lafspd--g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D---gt-I~iWDl 593 (1915)
....|+|+++ +..|+.+...+.|+.+|+.++..... ........+|+|++.+ .++++.... .. +..++.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG----~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNG----DMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTC----CEEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCC----CEEEEcCCCCcccceEEEEEC
Confidence 4578999984 34455554448999999987765544 3445568899999843 544444321 11 222322
Q ss_pred ccCccccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEc
Q psy9598 594 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fs 672 (1915)
..+. ...... ........+++++ +|.+.++-..++.|+.++.........+... +....-..|+|+
T Consensus 215 ~~~~-~~~~~~-----------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~d 281 (433)
T 4hw6_A 215 ASGF-TERLSL-----------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWH 281 (433)
T ss_dssp GGTT-CCEEEE-----------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEEC
T ss_pred CCCe-eccccc-----------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEe
Confidence 2111 000000 0113345688999 6766666667788888887422110112111 122233579999
Q ss_pred CCCCEE-EEEeCCCcEEEEEccC--CceE--EeeecccccCCCCccccccccccccEEEEEE---------CCCCCEEEE
Q psy9598 673 HSHLRF-VSGSRDGTALIWYYKC--SQWR--FIRLDMNTCLPHTKETSDETNKKIKVTMVAW---------DASDRWVIT 738 (1915)
Q Consensus 673 pdg~~L-~sgs~DG~I~IWDl~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~---------spdg~~L~t 738 (1915)
|+|.+| ++-...+.|..+++.. +... ....... ..............-.....+++ ..+|.++ +
T Consensus 282 pdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly-v 359 (433)
T 4hw6_A 282 PTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH-SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY-F 359 (433)
T ss_dssp TTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT-TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE-E
T ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC-CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE-E
Confidence 999955 4555668898888653 2211 0000000 00000000000112234567888 6666544 4
Q ss_pred EEecCCeEEEEECCCCceEEEeeCCC------------------CCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 739 AINFNFQIKIWDAFNGDLVQVLKGHT------------------NEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 739 ~s~~Dg~I~vwD~~tg~~i~~l~gH~------------------~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
+....+.|++++. +|.. .++.+.. .....|++.|.++.++++=...+.|+.+++
T Consensus 360 aD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 360 CDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 4444889999985 5643 3333221 135678888436666666556667777665
No 365
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.53 E-value=0.033 Score=66.77 Aligned_cols=226 Identities=13% Similarity=-0.005 Sum_probs=140.1
Q ss_pred CCcEEEEECCCCc-eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCC
Q psy9598 539 DKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 617 (1915)
Q Consensus 539 DgtIrVWDl~tg~-~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1915)
...|+.+++.... ....+......+.+|.|.+.. +.++++-...+.|..+++.+......... ..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~---~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-----------~~ 77 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH---GLIYWSDVSEEAIKRTEFNKTESVQNVVV-----------SG 77 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG---TEEEEEETTTTEEEEEETTSSSCCCEEEE-----------EC
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC---CEEEEEECCCCcEEEEEccCCCceEEEEc-----------CC
Confidence 4679999998763 122222223456789998742 45666666778899898876532111111 01
Q ss_pred CCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC--CCcEEEEEccC
Q psy9598 618 NAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR--DGTALIWYYKC 694 (1915)
Q Consensus 618 ~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~--DG~I~IWDl~~ 694 (1915)
-.....+++.+ .+.++++-...+.|.++++++.. ... .+.........|++.|.+..|+.+.. .+.|...++..
T Consensus 78 l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~-l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 78 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKV-LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEE-EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--EEE-EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 13456788887 45555666667899999985422 111 12234456789999987665555542 46777776654
Q ss_pred CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
.....+. .......+.|+|++++..|+.+....+.|..+|+........+.+......+|++..
T Consensus 155 ~~~~~~~----------------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~ 218 (318)
T 3sov_A 155 SSRFIII----------------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE 218 (318)
T ss_dssp CSCEEEE----------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET
T ss_pred CCeEEEE----------------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC
Confidence 3211110 011234578999999888888887688999999864433333333445567777753
Q ss_pred CCCCEEEEEecCceEEEEECCCCcc
Q psy9598 775 FDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
+.++++-...+.|..++..++..
T Consensus 219 --~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 219 --DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp --TEEEEEETTTTEEEEEETTTCCS
T ss_pred --CEEEEEecCCCeEEEEECCCCCc
Confidence 56666766778899999877766
No 366
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.53 E-value=0.55 Score=61.57 Aligned_cols=346 Identities=13% Similarity=0.037 Sum_probs=193.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCC
Q psy9598 474 GHLSAVFCVLFDKLGEVIVTGAD--DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAG-TVDKTIRIWNLQTL 550 (1915)
Q Consensus 474 gH~~~V~~vafspdg~~LaTGs~--Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSg-s~DgtIrVWDl~tg 550 (1915)
.....-..|+++|.+.+|+.... .+.|...++........+ ..-...+.|++++++..|+.+ ...+.|...++...
T Consensus 120 ~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 120 KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 44466789999986556665542 467888887544333223 344568899999987666655 45678999998764
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc--Cccc---ccc-------ccCC--
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH--EPVM---FNE-------RIRP-- 616 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~--~~~~---~~~-------~~~~-- 616 (1915)
.. ..+........+|++.. +.++++-...+.|...|..++.....+... .+.. +.. ....
T Consensus 199 ~~-~v~~~~l~~P~glav~~-----~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~n 272 (628)
T 4a0p_A 199 NR-EVIADDLPHPFGLTQYQ-----DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSN 272 (628)
T ss_dssp SC-EEEEECCSCEEEEEEET-----TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTG
T ss_pred ce-EEeeccCCCceEEEEEC-----CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCC
Confidence 44 34444445566787754 245555556788888887666433222110 0000 000 0000
Q ss_pred CC----------CceEEEE-----ECCCC-------cEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCC
Q psy9598 617 GN----------AHILCSS-----FSPGG-------LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 674 (1915)
Q Consensus 617 ~~----------~~V~~l~-----fspdg-------~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspd 674 (1915)
+. +...|.| ..+++ .+|+.+. ...|+-..+...........+ ..-..+.+|+|.+.
T Consensus 273 g~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~~l~~-~~~~~~~~ld~d~~ 350 (628)
T 4a0p_A 273 GHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQSPDIILPI-HSLRNVRAIDYDPL 350 (628)
T ss_dssp GGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCCCCEECCC-TTCSCEEEEEEETT
T ss_pred CCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccCceEEEEe-hhcCCceEEEEecC
Confidence 00 1112211 11222 1233332 234544444322111111111 12245778999886
Q ss_pred CCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC
Q psy9598 675 HLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN 753 (1915)
Q Consensus 675 g~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t 753 (1915)
...|+.+ ...+.|..+++.......+.... .........+..++++..++.|+.+....+.|.+.++.
T Consensus 351 ~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~----------~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~- 419 (628)
T 4a0p_A 351 DKQLYWIDSRQNMIRKAQEDGSQGFTVVVSS----------VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD- 419 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEEC------------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred CCeEEEEecCcceEEEEEcCCCCceEEEEcc----------cccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-
Confidence 6655544 45677877766543211111000 00001233577899999988888777668899999985
Q ss_pred CceEEEee-CCCCCeEEEEEccCCCCEEEEEecCc--eEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEE
Q psy9598 754 GDLVQVLK-GHTNEVFVLESHPFDSRVLLSAGHDG--LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCA 830 (1915)
Q Consensus 754 g~~i~~l~-gH~~~V~sl~~sp~dg~~LaSgs~DG--~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~La 830 (1915)
|.....+. .......+|+++|..+.+++|-.... .|...++..... ..+. .........+++.+++..|.
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~---~~l~----~~~l~~P~gla~D~~~~~LY 492 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER---EVLF----FSGLSKPIALALDSRLGKLF 492 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC---EEEE----CSSCSCEEEEEEETTTTEEE
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc---EEEE----eccCCCccEEEEeCCCCEEE
Confidence 55554443 44566899999996666666644333 566666654332 2221 12335678999999888888
Q ss_pred EEeC-CCeEEEEeCCCC
Q psy9598 831 LTDS-YGHLLVYGLGGF 846 (1915)
Q Consensus 831 sg~~-dG~I~Iwdl~s~ 846 (1915)
.++. .+.|..+++...
T Consensus 493 w~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 493 WADSDLRRIESSDLSGA 509 (628)
T ss_dssp EEETTTTEEEEEETTSC
T ss_pred EEeCCCCEEEEEeCCCC
Confidence 7765 478999998654
No 367
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.48 E-value=0.089 Score=65.19 Aligned_cols=247 Identities=12% Similarity=-0.016 Sum_probs=148.0
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEECCCC----ceEEEeecCCCCe
Q psy9598 489 EVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNLQTL----APISVLVGHQGII 563 (1915)
Q Consensus 489 ~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~La-Sgs~DgtIrVWDl~tg----~~~~~l~~h~~~V 563 (1915)
.+|+.+. ...|+..++........+. ....+..|+|++.+..|+ +-...+.|..+++... .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3444444 3588888987765544444 456789999998655554 4445788999998752 2333444345567
Q ss_pred EEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-C-CCe
Q psy9598 564 TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-G-DHH 641 (1915)
Q Consensus 564 ~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~-Dg~ 641 (1915)
..|++.+. ++.++++-...+.|.+.++....... .+. ........+++.|.+.+|+... . .+.
T Consensus 162 ~glavD~~---~~~lY~~d~~~~~I~~~~~~g~~~~~--l~~----------~~~~~P~~iavdp~~g~ly~td~~~~~~ 226 (400)
T 3p5b_L 162 DGLAVDWI---HSNIYWTDSVLGTVSVADTKGVKRKT--LFR----------ENGSKPRAIVVDPVHGFMYWTDWGTPAK 226 (400)
T ss_dssp EEEEEETT---TTEEEEEETTTTEEEEECTTTCSEEE--EEE----------CSSCCEEEEEEETTTTEEEEEECSSSCC
T ss_pred ccEEEEec---CCceEEEECCCCeEEEEeCCCCceEE--EEe----------CCCCCcceEEEecccCeEEEEeCCCCCE
Confidence 88888763 24566666678889998887543211 111 1124578899999655555544 2 367
Q ss_pred EEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCccccccccc
Q psy9598 642 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720 (1915)
Q Consensus 642 I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1915)
|...++++... . ..+...-.....|++++++..|+.+ +..+.|..+|+.......+... ...
T Consensus 227 I~~~~~dG~~~--~-~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--------------~~~ 289 (400)
T 3p5b_L 227 IKKGGLNGVDI--Y-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED--------------EKR 289 (400)
T ss_dssp EEEEETTSCSC--E-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEEC--------------SST
T ss_pred EEEEeCCCCcc--E-EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeC--------------CCC
Confidence 88888754321 1 1122333567899999877766655 4567888888865442222110 001
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEE
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 771 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~ 771 (1915)
......|++ ++..|+.+....+.|..+|..+|+.+..+.........|.
T Consensus 290 l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 290 LAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp TSSEEEEEE--ETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred CCCCEEEEE--eCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 122345555 3445555555478899999888887777764444445554
No 368
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.46 E-value=0.08 Score=65.61 Aligned_cols=234 Identities=12% Similarity=-0.042 Sum_probs=143.3
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccc
Q psy9598 532 LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN 611 (1915)
Q Consensus 532 ~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~ 611 (1915)
+|+.+. ...|+..++........+ .....+..|+|.+. ++.++++-...+.|..+++..........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~---~~~lywsD~~~~~I~~~~~~g~~~~~~~~-------- 151 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGVSSYD-------- 151 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETT---TTEEEEEETTTTEEEEEEC------CCCE--------
T ss_pred eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeec---cCceEEEecCCCeEEEEEcccCCCCCcce--------
Confidence 444443 467899998876555444 34567889999984 34555565667889888886532100000
Q ss_pred cccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC--CCcEE
Q psy9598 612 ERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR--DGTAL 688 (1915)
Q Consensus 612 ~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~--DG~I~ 688 (1915)
............+++.+ .+.+.++-...+.|.+.++++.. ....+.........|++.|.+.+|+.+.. .+.|.
T Consensus 152 ~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~---~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~ 228 (400)
T 3p5b_L 152 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK 228 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS---EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEE
T ss_pred EEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc---eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEE
Confidence 00111224577899987 55556666677889999885322 22222333455789999986665555442 36777
Q ss_pred EEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC--CCCC
Q psy9598 689 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG--HTNE 766 (1915)
Q Consensus 689 IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g--H~~~ 766 (1915)
..++.......+. .......+.|++++++..|+.+....+.|..+|+........+.. .-..
T Consensus 229 ~~~~dG~~~~~~~----------------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~ 292 (400)
T 3p5b_L 229 KGGLNGVDIYSLV----------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH 292 (400)
T ss_dssp EEETTSCSCEEEE----------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSS
T ss_pred EEeCCCCccEEEE----------------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCC
Confidence 7776644322111 011245678999999999998887678999999865443333332 2344
Q ss_pred eEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 767 VFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 767 V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
..+|++. .+.++++-...+.|..++..++..
T Consensus 293 P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 293 PFSLAVF--EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEEEEEE--TTEEEEEESSSCSEEEEESSSCCC
T ss_pred CEEEEEe--CCEEEEecCCCCeEEEEEcCCCCc
Confidence 5677773 456677777778898888777766
No 369
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.39 E-value=0.69 Score=62.28 Aligned_cols=334 Identities=10% Similarity=0.046 Sum_probs=182.6
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEE-eCC----CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGC----SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA 551 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-~gH----~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~ 551 (1915)
..|.++..+.+|.+.+ |+.. -|..++..++...... ... ...|.+|....++..|..|+. +-|..++..++.
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 5799999988887655 5555 4778888776543221 111 224889988887765555554 357888987765
Q ss_pred eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 552 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 552 ~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
...........|.+|..... ..|..|+.+ -|.+++..+.... ..... . .....-....|.++....+|.
T Consensus 223 ~~~~~~l~~~~i~~i~~d~~-----g~lWigT~~-Gl~~~~~~~~~~~-~~~~~-~---~~~~~l~~~~i~~i~~D~~g~ 291 (758)
T 3ott_A 223 IKQTEAFHNNSIKSLALDGN-----GDLLAGTDN-GLYVYHNDTTPLQ-HIIHD-S---RNIQSLTNNIIWNIFADQEHN 291 (758)
T ss_dssp EEEEEEEEEEEEEEEEECTT-----CCEEEEETT-EEEEECCTTSCCE-EECCC-T---TCTTSCSCSCEEEEEECTTCC
T ss_pred EEeccCCCCCeEEEEEEcCC-----CCEEEEeCC-ceeEEecCCCcEE-EEEcC-C---CCcCcCCcCeEEEEEEcCCCC
Confidence 43221112345777766542 345555554 4777877654321 11100 0 000011235689999888876
Q ss_pred EEEEEeCCCeEEEEEecCCCCCceeEEec-----cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEe-eeccc
Q psy9598 632 FLATGSGDHHVRVYKMDGVDSPLGILEVE-----EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFI-RLDMN 705 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~-----~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~-~~~~~ 705 (1915)
|-+|+..| |.++... . ........ .....|.+|....+|.+. .|+.+| +..++..++..... .....
T Consensus 292 -lWiGT~~G-l~~~~~~--~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G-l~~~~~~~~~~~~~~~~~~~ 364 (758)
T 3ott_A 292 -IWLGTDYG-ISLSRYN--S-ALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG-LIRFTDPAGERHDAIWYRMG 364 (758)
T ss_dssp -EEEEESSS-EEEECCC--C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE-EEEESCTTSSCCCCEEECTT
T ss_pred -EEEEeCCc-ccccccC--C-ceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc-ceeecccccccceeEEeccC
Confidence 45555566 4444321 1 11111111 123468888887777644 455555 55565544321000 00000
Q ss_pred ccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-C-----CCCCeEEEEEccCCCCE
Q psy9598 706 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-G-----HTNEVFVLESHPFDSRV 779 (1915)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-g-----H~~~V~sl~~sp~dg~~ 779 (1915)
. .........|.++.-+.+|...+.+ ++-|.+||..+++...... . ....|.++.... ++.
T Consensus 365 -----~---~~~~l~~~~v~~i~~d~~g~lWigt---~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~- 431 (758)
T 3ott_A 365 -----D---KTYPLSHNRIRHIYEDKEQQLWIAT---DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ- 431 (758)
T ss_dssp -----C---SSSCCSCSCEEEEEECTTSCEEEEE---TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-
T ss_pred -----C---cCCCCCCCceEEEEECCCCCEEEEe---CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-
Confidence 0 0001123568899988888766543 3568999988876543221 1 234588887765 444
Q ss_pred EEEEecCceEEEEECCCC-----ccccc---eeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 780 LLSAGHDGLIIIWDILSS-----KQRGY---KWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 780 LaSgs~DG~I~IWdl~s~-----~~~~~---~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
|..|+..+-|.+++..+. .. . ..+. ...+.....|.++....+|.+.+.++..+-|..|+..++.
T Consensus 432 lWigT~~~Gl~~~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~ 504 (758)
T 3ott_A 432 LWISTCLGGIFVVDKHKLMQSTSGQ--YIAEQNYS-VHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTRE 504 (758)
T ss_dssp EEEEESSSCEEEEEHHHHHHCCSSE--EECSEEEC-GGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTE
T ss_pred EEEEECCCceEEEccccccccCCcc--eecccccc-cccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCc
Confidence 555776667888886431 11 1 0111 1112223458899999999977644444558888887654
No 370
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.30 E-value=0.05 Score=73.12 Aligned_cols=246 Identities=12% Similarity=0.012 Sum_probs=145.3
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCC----ceEE
Q psy9598 480 FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTL----APIS 554 (1915)
Q Consensus 480 ~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg----~~~~ 554 (1915)
+|.++.... +|+.+ ....|+..++........+. ....+..|+|++.+. ++++-...+.|+.+++... ....
T Consensus 388 ~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~ 464 (791)
T 3m0c_C 388 ACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 464 (791)
T ss_dssp CCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred eeeeccccc-ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE
Confidence 455544433 44433 33568888887665544444 345688999998554 4455556688999998753 2334
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEE
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 634 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~La 634 (1915)
.+.........|++.+. +++++++-...+.|.+.++..... ..+ +. ........|++.|.+.+|+
T Consensus 465 vi~~~l~~P~GLAvD~~---~~~LY~tD~~~~~I~v~~ldG~~~-~~l-~~----------~~l~~P~gIaVDp~~g~LY 529 (791)
T 3m0c_C 465 VISRDIQAPDGLAVDWI---HSNIYWTDSVLGTVSVADTKGVKR-KTL-FR----------ENGSKPRAIVVDPVHGFMY 529 (791)
T ss_dssp EECSSCSCCCEEEEETT---TTEEEEEETTTTEEEEEETTSSSE-EEE-EE----------CTTCCEEEEEEETTTTEEE
T ss_pred EEecCCCCcceeeeeec---CCcEEEEecCCCeEEEEeCCCCeE-EEE-Ee----------CCCCCcceEEEecCCCCEE
Confidence 44434556778888764 245666777788999999875431 111 11 1124578999999755555
Q ss_pred EEe-CC-CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCC
Q psy9598 635 TGS-GD-HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHT 711 (1915)
Q Consensus 635 sgs-~D-g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~ 711 (1915)
... .. +.|.+.++++.. ....+...-.....|++++.+..|+.+. ..+.|...++.......+...
T Consensus 530 wtD~g~~~~I~~~~~dG~~---~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-------- 598 (791)
T 3m0c_C 530 WTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-------- 598 (791)
T ss_dssp EEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--------
T ss_pred EecCCCCCeEEEEecCCCc---eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC--------
Confidence 544 33 678888875322 1122233345788999997766666554 556788888765443222110
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
.........|++ .+.+|+.+....+.|...|..+|..+..+..
T Consensus 599 ------~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 599 ------EKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp ------TTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred ------CCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence 001112334555 3457777766578888888878876666643
No 371
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.084 Score=66.57 Aligned_cols=263 Identities=11% Similarity=0.000 Sum_probs=139.0
Q ss_pred CEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceEEEeecC---CCCeEEEEe-------ccCccCCCcEEEEEeCCC-
Q psy9598 520 EISDIAIDNR--NILLAAGTVDKTIRIWNLQTLAPISVLVGH---QGIITGVNF-------CPLEVNGFNYLASTSTDG- 586 (1915)
Q Consensus 520 ~I~~Lafspd--g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h---~~~V~sl~f-------sp~~~~d~~~L~sgs~Dg- 586 (1915)
....|+|+|. ++++++....+.|++.|+.++.....+... ......|+| .+. +.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~----G~~lyvad~~~~ 215 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE----AEYMIVAIDYDG 215 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT----TCEEEEEECCCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC----CCEEEEEeCCCC
Confidence 3578999983 444455444567999999887765554332 235789999 874 36555555443
Q ss_pred ------eEEEEecccCccccc-eeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEec-------CCC
Q psy9598 587 ------CIGFWKYKLDIDISK-TVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMD-------GVD 651 (1915)
Q Consensus 587 ------tI~iWDl~~~~~~~~-~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I~IwDl~-------~~~ 651 (1915)
.|.+++......... .... ... . .....+++++| ++.++++-..++.|..+|+. +..
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~---~v~-~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~ 287 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQ---LIA-A----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG 287 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEE---EEE-E----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC
T ss_pred CcccCceEEEEecCCCCceeecccce---eec-c----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce
Confidence 255555333111110 0000 000 1 12345778899 45556666778889999985 222
Q ss_pred C-----------CceeEEeccCCCCeeEEEEcCCCCEE-EEEeCCCcEEEEEccCCc-eE---EeeecccccCCCCcccc
Q psy9598 652 S-----------PLGILEVEEHSDKVDSIQWSHSHLRF-VSGSRDGTALIWYYKCSQ-WR---FIRLDMNTCLPHTKETS 715 (1915)
Q Consensus 652 ~-----------~~~i~~l~~h~~~V~sl~fspdg~~L-~sgs~DG~I~IWDl~~~~-~~---~~~~~~~~~~~~~~~~~ 715 (1915)
. ...+..+ +.......|+|+|+|.+| ++-+..+.|+.+++.... .+ ........ ..+...-.
T Consensus 288 ~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g-~~G~~DG~ 365 (496)
T 3kya_A 288 SWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYK-QSGYRDDV 365 (496)
T ss_dssp CCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTT-BCCCBCCB
T ss_pred eecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCC-CCcccCCc
Confidence 2 0022222 223456799999999954 444567788887664322 11 11111000 00000000
Q ss_pred ccccccccEE-EEEEC-------CCCCEEEEEEecCCeEEEEECCCCceEEEeeCCC-----------------------
Q psy9598 716 DETNKKIKVT-MVAWD-------ASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT----------------------- 764 (1915)
Q Consensus 716 ~~~~~~~~V~-~va~s-------pdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~----------------------- 764 (1915)
.....-.... .++.. .+| .|+++....+.|+.++ .+|. +.++.|..
T Consensus 366 ~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~ 442 (496)
T 3kya_A 366 GTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVAR 442 (496)
T ss_dssp GGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCC
T ss_pred ccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhh
Confidence 0001112233 45554 334 4555655588999998 4564 44554321
Q ss_pred -CCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 765 -NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 765 -~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
.....|++.+.++.++++=.....|+.+++....+
T Consensus 443 f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 443 FRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred cCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 12467777772255555555667777777765443
No 372
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.23 E-value=0.083 Score=63.27 Aligned_cols=229 Identities=10% Similarity=0.013 Sum_probs=136.0
Q ss_pred CCcEEEEECCCCc--EEEEEeCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCce-EEEeecCCCCeEEEEeccCc
Q psy9598 497 DLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAP-ISVLVGHQGIITGVNFCPLE 572 (1915)
Q Consensus 497 Dg~I~IWd~~tg~--~~~~l~gH~~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg~~-~~~l~~h~~~V~sl~fsp~~ 572 (1915)
...|+.+++.... ....+. ....+..|+|++.+. ++++-...+.|..+++..+.. ...+........++++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~- 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL- 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT-
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC-
Confidence 3578889987653 112222 123567899998544 555555678899999886642 2223333345677888763
Q ss_pred cCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEecCC
Q psy9598 573 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKMDGV 650 (1915)
Q Consensus 573 ~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs--~Dg~I~IwDl~~~ 650 (1915)
++.++++-...+.|.++++..... ..... ........+++.|.+.+|+.+. ..+.|..+++++.
T Consensus 90 --~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~----------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 155 (318)
T 3sov_A 90 --GEKLYWTDSETNRIEVSNLDGSLR--KVLFW----------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 155 (318)
T ss_dssp --TTEEEEEETTTTEEEEEETTSCSC--EEEEC----------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC
T ss_pred --CCeEEEEECCCCEEEEEECCCCcE--EEEEe----------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC
Confidence 345666666778999998865421 11110 1224568899998655555554 2577888887542
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEE
Q psy9598 651 DSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 729 (1915)
Q Consensus 651 ~~~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~ 729 (1915)
. ... .....-.....|+|++++..|+.+ +..+.|..+|+.......+.. ........+++
T Consensus 156 ~--~~~-~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~----------------~~~~~P~glav 216 (318)
T 3sov_A 156 S--RFI-IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK----------------GSLPHPFALTL 216 (318)
T ss_dssp S--CEE-EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------SCCSCEEEEEE
T ss_pred C--eEE-EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec----------------CCCCCceEEEE
Confidence 2 111 122223456899999876655554 456788888886543221110 01223445666
Q ss_pred CCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 730 DASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 730 spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
. +..|+.+....+.|..++..+|+.+..+..
T Consensus 217 ~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 217 F--EDILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred e--CCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 4 335555555578899999888877666543
No 373
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.18 E-value=0.43 Score=56.01 Aligned_cols=272 Identities=12% Similarity=0.109 Sum_probs=162.4
Q ss_pred CCcEEEEECCCCcEEEEE-eCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCC
Q psy9598 497 DLLIKLWRARDGKLLATL-RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNG 575 (1915)
Q Consensus 497 Dg~I~IWd~~tg~~~~~l-~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d 575 (1915)
+..|.|.|+..+.....- -.-.+ .-.+|....||.-. ..++.|+|+++...+..+.-. ..|.-=.|...
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ads----AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~---- 117 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISADS----AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL---- 117 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCSE----EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSS----
T ss_pred CCEEEEEECCCCCCccccccccce----eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCC----
Confidence 347889999876543222 11222 23478777777665 678999999998888877654 45666666542
Q ss_pred CcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeC-------CCeEEEEEec
Q psy9598 576 FNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-------DHHVRVYKMD 648 (1915)
Q Consensus 576 ~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~-------Dg~I~IwDl~ 648 (1915)
+.|+..+. ..|.-|++...... ...+.....+ ...+|..-..+++.++++..|- .|.+.+|.+.
T Consensus 118 -~~L~lVT~-taVyHWs~~~~s~P-~kvFdR~~~L------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 118 -NTVALVTD-NAVYHWSMEGESQP-VKMFDRHSSL------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp -SEEEEEES-SEEEEEESSTTCCC-EEEEECCGGG------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred -CeEEEEcC-CcEEEEcccCCCCC-ceeeecchhc------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec
Confidence 45555554 56999998763221 2222211111 1477888888999988765442 4778899873
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCC---CCEEEEEeC---CCcEEEEEccCCceEEeeecccccCCCCc--cccccccc
Q psy9598 649 GVDSPLGILEVEEHSDKVDSIQWSHS---HLRFVSGSR---DGTALIWYYKCSQWRFIRLDMNTCLPHTK--ETSDETNK 720 (1915)
Q Consensus 649 ~~~~~~~i~~l~~h~~~V~sl~fspd---g~~L~sgs~---DG~I~IWDl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 720 (1915)
. .....+.||......+.+..+ ...|+.+.. .+.++|-++..... -........ ........
T Consensus 189 r----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~------~~~~f~kk~vdi~fppea~ 258 (365)
T 2xzh_A 189 R----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT------GNQPFPKKAVDVFFPPEAQ 258 (365)
T ss_dssp T----TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCT------TCCCCCCEEEEECCCTTCT
T ss_pred c----cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCC------CCCCcccccceeeCCcccc
Confidence 2 334456777655443333211 112333322 25777777643200 000000000 00001112
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
..--.++..+.....++.-+. -|.|++||+.+|.++..-+-....|+..+.+. ...=++.....|.|.--.+.....
T Consensus 259 ~DFPVamqvs~kygviyviTK-~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 259 NDFPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp TCCEEEEEEETTTTEEEEEET-TSEEEEEETTTCCEEEEEECCSSCEEEEEEEG-GGTEEEEEETTCEEEEEEECTTTH
T ss_pred CCceEEEEecccCCEEEEEeC-CcEEEEEEcccCcEEEEeccCCCceEEecccC-CCCcEEEEcCCCEEEEEEECcccE
Confidence 333456677777777777776 89999999999999999888888888777665 334455666888887777766544
No 374
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.18 E-value=0.1 Score=70.22 Aligned_cols=211 Identities=9% Similarity=-0.053 Sum_probs=127.1
Q ss_pred CceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCC-CceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccCC
Q psy9598 619 AHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 619 ~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~~ 695 (1915)
..+..++|++. +.++++-...+.|+.+++.+... ......+.........|++.+.+. ++++-...+.|.+.++...
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 56788999985 44555556678899998854221 111222333445677899987765 4555566788999988755
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC-CeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D-g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
....+.. ........|+++|.+.+|+.+.... +.|.+.++........+...-...+.|++.+
T Consensus 504 ~~~~l~~----------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~ 567 (791)
T 3m0c_C 504 KRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 567 (791)
T ss_dssp SEEEEEE----------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEET
T ss_pred eEEEEEe----------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEec
Confidence 4322211 1123467899999888888776433 7899999864444334443445789999998
Q ss_pred CCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcccccC
Q psy9598 775 FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SYGHLLVYGLGGFKRPQNI 852 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~-~dG~I~Iwdl~s~~~~~~l 852 (1915)
..+.++++=...+.|...++..... ..+. ..........+|++. +..|..++ ..+.|...+..++..+..+
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~~~---~~v~--~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGGNR---KTIL--EDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSC---EEEE--ECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCeEEEEeCCCCcEEEEecCCCce---EEEe--cCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 4555555555677899999865443 2221 011112334566663 34555554 5577888887776554443
No 375
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.15 E-value=1.1 Score=60.23 Aligned_cols=329 Identities=12% Similarity=0.089 Sum_probs=177.0
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEE
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 555 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~ 555 (1915)
...|.|+..+.+| .|..|+.+| +.+||..+.............|.++.. .+| .|..|+.+ -|..+|..++.....
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 3579999888776 566777765 789998876543211112345777765 355 45556655 578889877654332
Q ss_pred ee----cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCc
Q psy9598 556 LV----GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 631 (1915)
Q Consensus 556 l~----~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~ 631 (1915)
.. .....|.++..... ..|..|+..| |..++..++... .+..+. ........|.++....++.
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~-----g~lWigt~~G-l~~~~~~~~~~~---~~~~~~----~~~~~~~~i~~i~~d~~~~ 203 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKD-----NQIYVGTYNG-LCRYIPSNGKFE---GIPLPV----HSSQSNLFVNSLLEDTTRQ 203 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTT-----CCEEEEETTE-EEEEETTTTEEE---EECCCC----CTTCSSCCEEEEEEETTTT
T ss_pred ccCCCCcCCCeEEEEEEcCC-----CCEEEEeCCC-HhhCccCCCceE---EecCCC----ccccccceeEEEEEECCCC
Confidence 11 11345777776542 2344455554 667776554311 011000 0001124588888887776
Q ss_pred EEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCC
Q psy9598 632 FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 711 (1915)
Q Consensus 632 ~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~ 711 (1915)
.|.+|+. +-|..|+... ........+ ....|.+|....+|.+.+ |+.+ -+.+++..+...........
T Consensus 204 ~lWigt~-~Gl~~~~~~~-~~~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~------ 271 (758)
T 3ott_A 204 CVWIGTE-GYLFQYFPST-GQIKQTEAF--HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSR------ 271 (758)
T ss_dssp EEEEEEE-EEEEEEETTT-TEEEEEEEE--EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTT------
T ss_pred EEEEEEC-CCCeEEcCCC-CeEEeccCC--CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCC------
Confidence 5555654 4577777632 111111112 234588888887776544 4544 57788877665433211100
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee-------CCCCCeEEEEEccCCCCEEEEEe
Q psy9598 712 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-------GHTNEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 712 ~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~-------gH~~~V~sl~~sp~dg~~LaSgs 784 (1915)
....-....|.++..+.+|...+.+ . .| |.++.. ... ...+. .....|.++.... ++.+.+ |+
T Consensus 272 ---~~~~l~~~~i~~i~~D~~g~lWiGT-~-~G-l~~~~~-~~~-~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lWi-Gt 341 (758)
T 3ott_A 272 ---NIQSLTNNIIWNIFADQEHNIWLGT-D-YG-ISLSRY-NSA-LQFIPISQITGTGDGNQFYSLFRDS-KGFYWF-GG 341 (758)
T ss_dssp ---CTTSCSCSCEEEEEECTTCCEEEEE-S-SS-EEEECC-CC--CEEEEHHHHSCSCCCCBEEEEEECT-TCCEEE-EE
T ss_pred ---CcCcCCcCeEEEEEEcCCCCEEEEe-C-Cc-cccccc-CCc-eeEEecccCCCCCCCceEEEEEEcC-CCCEEE-ee
Confidence 0011134568999998888766544 4 46 444433 221 11111 1234688887766 666544 45
Q ss_pred cCceEEEEECCCCccccceeeeee--ecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy9598 785 HDGLIIIWDILSSKQRGYKWFHNI--VEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 847 (1915)
Q Consensus 785 ~DG~I~IWdl~s~~~~~~~~~~~~--~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~ 847 (1915)
.+| +..++..++.......+... ........|.++.-..+|.+.+.+ ++-|..|+..++.
T Consensus 342 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt--~~GL~~~~~~~~~ 403 (758)
T 3ott_A 342 ANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT--DGSINRYDYATRQ 403 (758)
T ss_dssp TTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTE
T ss_pred CCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe--CCcHhhcCcCCCc
Confidence 555 66666554332112222100 001123468888888888765544 3578889887654
No 376
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.12 E-value=0.05 Score=65.08 Aligned_cols=196 Identities=13% Similarity=0.165 Sum_probs=119.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCC----CC---EEEEEe-C--CCcEEEEEC--CCCceE
Q psy9598 486 KLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNR----NI---LLAAGT-V--DKTIRIWNL--QTLAPI 553 (1915)
Q Consensus 486 pdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspd----g~---~LaSgs-~--DgtIrVWDl--~tg~~~ 553 (1915)
|...++++....+-+.|||+ +|+.++.+.+ +.++.+.+-|+ |. ++++.. . +++|+||++ .++. +
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 34566666667788999999 9999999864 56777766653 22 223333 3 578999977 3433 4
Q ss_pred EEeec------CC-CCeEEEEe--ccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 554 SVLVG------HQ-GIITGVNF--CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 554 ~~l~~------h~-~~V~sl~f--sp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
..+.. .. ..+..+|+ +|.. +..++++...+|.+..|++.....- .... .....+.- .+.+-.|
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~--g~~yafV~~k~G~~~q~~l~~~~~g-~~~~----~lVR~f~l-gsq~Egc 185 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKT--GKYYAMVTGKEGEFEQYELKADKNG-YISG----KKVRAFKM-NSQTEGM 185 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTT--CCEEEEEECSSSEEEEEEEEECTTS-CEEE----EEEEEEEC-SSCEEEE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCC--CcEEEEEECCCCeEEEEEEEeCCCC-cccc----eEEEEecC-CCCcceE
Confidence 44421 11 45667777 5532 3347888888999999998432110 0000 00011111 2567888
Q ss_pred EECCCCcEEEEEeCCCeEEEEEecCCC--CCceeEEec-cC-CCCeeEEEE--cCCCC-EEEEEe-CCCcEEEEEcc
Q psy9598 625 SFSPGGLFLATGSGDHHVRVYKMDGVD--SPLGILEVE-EH-SDKVDSIQW--SHSHL-RFVSGS-RDGTALIWYYK 693 (1915)
Q Consensus 625 ~fspdg~~Lasgs~Dg~I~IwDl~~~~--~~~~i~~l~-~h-~~~V~sl~f--spdg~-~L~sgs-~DG~I~IWDl~ 693 (1915)
.+.+....|+++-.+.-|..|+..... ....+..+. ++ ...+..|++ .+++. +|++++ .+.++.+||..
T Consensus 186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 899888899999998665555542221 223333331 22 246888887 45555 566555 66799999986
No 377
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.02 E-value=0.26 Score=59.85 Aligned_cols=246 Identities=15% Similarity=0.077 Sum_probs=121.5
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcE--EEEEe---CCCCCEEEEEEeCC---CCEEEEE-eCC-----Cc
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL--LATLR---GCSGEISDIAIDNR---NILLAAG-TVD-----KT 541 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~--~~~l~---gH~~~I~~Lafspd---g~~LaSg-s~D-----gt 541 (1915)
...-++|+|.|+|+++++ ..+|.|.+++ ++.. +..+. ........|+|+|+ +..|+.+ +.. +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 455779999999985554 5679999998 4542 22221 12456899999998 4455444 322 56
Q ss_pred EEEEECCCCce-----EE-Eee---cCCCCeEEEEeccCccCCCcEEEEEeCC-------------CeEEEEecccCccc
Q psy9598 542 IRIWNLQTLAP-----IS-VLV---GHQGIITGVNFCPLEVNGFNYLASTSTD-------------GCIGFWKYKLDIDI 599 (1915)
Q Consensus 542 IrVWDl~tg~~-----~~-~l~---~h~~~V~sl~fsp~~~~d~~~L~sgs~D-------------gtI~iWDl~~~~~~ 599 (1915)
|..|++..+.. +. .+. +.......|+|.|+ +.++++.+.. |.|.-++.... ..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd----G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p 181 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD----GMLYVTTGEVYERELAQDLASLGGKILRLTPEGE-PA 181 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT----SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC----CCEEEEECCCCCCccccCCCCCceEEEEEcCCCC-CC
Confidence 88888764321 11 132 11123368899984 3555554321 44554544321 00
Q ss_pred cceecc-CccccccccCCCCCceEEEEECC-CCcEEEEEeCCCeE------EEEEecCCC---------------CCcee
Q psy9598 600 SKTVFH-EPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHV------RVYKMDGVD---------------SPLGI 656 (1915)
Q Consensus 600 ~~~~~~-~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg~I------~IwDl~~~~---------------~~~~i 656 (1915)
....+. ........+..+......++|+| +|.++++-...+.+ .|.-+.... ....+
T Consensus 182 ~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 182 PGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000000 00000011111123456789999 66655554333331 122222111 01122
Q ss_pred EEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEE
Q psy9598 657 LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 736 (1915)
Q Consensus 657 ~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L 736 (1915)
..+ .+......++| .+|.++++....+.|...++............ .........+..+++.|+|.++
T Consensus 262 ~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~----------~~~~~~~~rp~~v~~~pdG~ly 329 (352)
T 2ism_A 262 YFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRV----------ETALSGFGRLREVQVGPDGALY 329 (352)
T ss_dssp EEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEE----------EEEEESSCCEEEEEECTTSCEE
T ss_pred Eec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecch----------heecccCCCeeEEEECCCCcEE
Confidence 223 22334567777 46666666666666776666533210000000 0000122467889999999776
Q ss_pred EEEEe
Q psy9598 737 ITAIN 741 (1915)
Q Consensus 737 ~t~s~ 741 (1915)
++...
T Consensus 330 v~~~~ 334 (352)
T 2ism_A 330 VTTSN 334 (352)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 66543
No 378
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.83 E-value=0.065 Score=63.53 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=106.3
Q ss_pred EEEEEEcCCCCEEEEEE-CCCcEEEEECCCCcEEEE-EeC----CCC--CEEEEEE---eCCCCEEEEEe----------
Q psy9598 479 VFCVLFDKLGEVIVTGA-DDLLIKLWRARDGKLLAT-LRG----CSG--EISDIAI---DNRNILLAAGT---------- 537 (1915)
Q Consensus 479 V~~vafspdg~~LaTGs-~Dg~I~IWd~~tg~~~~~-l~g----H~~--~I~~Laf---spdg~~LaSgs---------- 537 (1915)
--|+.|++....|..++ ..|+|..|+...+..... +.+ ... .+..|.| .++++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34789988666666666 789999999976654433 322 111 3689999 68887777543
Q ss_pred ---CCCcEEEEECC---CCceEEEee--cC-----------CCCeEEEEeccCccCCCcEEEEEeCC-CeEEEEecccCc
Q psy9598 538 ---VDKTIRIWNLQ---TLAPISVLV--GH-----------QGIITGVNFCPLEVNGFNYLASTSTD-GCIGFWKYKLDI 597 (1915)
Q Consensus 538 ---~DgtIrVWDl~---tg~~~~~l~--~h-----------~~~V~sl~fsp~~~~d~~~L~sgs~D-gtI~iWDl~~~~ 597 (1915)
.+..|..+|+. +++.+..+. .. ...+..++..+ +++..++++.. +.|..++.....
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~----~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR----DGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT----TSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC----CCCEEEeCCCCCCeEEEEeCCCCE
Confidence 25779999999 888766553 11 12477888887 45888888887 777666655431
Q ss_pred cccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEec
Q psy9598 598 DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMD 648 (1915)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~ 648 (1915)
+.......+ ........+.|+++|+|..|++....|.|..+|+.
T Consensus 171 -~~~~~~~~~------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 -VSTFAWESG------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp -EEEEEECCC------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred -EeeeeecCC------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 111111111 01112346789999999988888779999999985
No 379
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.79 E-value=1.7 Score=53.09 Aligned_cols=273 Identities=12% Similarity=0.109 Sum_probs=161.5
Q ss_pred CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCC
Q psy9598 497 DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGF 576 (1915)
Q Consensus 497 Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~ 576 (1915)
+..|.|.|+..+..+..-.-. --+.-.+|..+.||.-. ..++.|+|+.+...+..+.-.. .|.-=.|...
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~----- 116 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL----- 116 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-----
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-----
Confidence 347889998876543221111 11233567777776655 6799999999988888776544 4555566542
Q ss_pred cEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-------CCCeEEEEEecC
Q psy9598 577 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-------GDHHVRVYKMDG 649 (1915)
Q Consensus 577 ~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-------~Dg~I~IwDl~~ 649 (1915)
+.|+..+. ..|.-|++..... ....+.....+ ....|..-..+++.++++..| -.|.+.+|.+..
T Consensus 117 ~~l~lVT~-taVyHWsi~~~s~-P~kvFdR~~~L------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 117 NTVALVTD-NAVYHWSMEGESQ-PVKMFDRHSSL------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp TEEEEECS-SEEEEEESSSSCC-CEEEEECCGGG------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred CeEEEEcC-CeeEEecccCCCC-chhheecchhc------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 45555553 5699999876322 12222211111 147788888999999877543 247788998842
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCC---CEEEEEeCC---CcEEEEEccCCceEEeeecccccCCCC--cccccccccc
Q psy9598 650 VDSPLGILEVEEHSDKVDSIQWSHSH---LRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHT--KETSDETNKK 721 (1915)
Q Consensus 650 ~~~~~~i~~l~~h~~~V~sl~fspdg---~~L~sgs~D---G~I~IWDl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 721 (1915)
.....+.||......+.+..+. ..|+.+... +.++|-++..... -....... ..........
T Consensus 189 ----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~------~~~~f~kk~vdv~fppe~~~ 258 (494)
T 1bpo_A 189 ----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT------GNQPFPKKAVDVFFPPEAQN 258 (494)
T ss_dssp ----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT------TCCCCCCEEEECCCCTTSTT
T ss_pred ----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc------CCCCccceeeeeeCCccccc
Confidence 2234567886655544433221 133333332 6788877743200 00000000 0000011122
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
.--.++..++....++.-+. -|.|++||+.+|.++..-+-....|+..+.+. ...=++.....|.|.--.+.....
T Consensus 259 DFPvamqvs~kygviyviTK-~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 259 DFPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp CCEEEEEEETTTTEEEEEET-TSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TTTEEEEEETTCEEEEEEECTTTH
T ss_pred CceeEEEecccCCEEEEEec-CceEEEEecccceeeeeecccCCceEEecccC-CCCcEEEEccCceEEEEEEccccc
Confidence 33456777887777777776 89999999999999998887777777766665 334455555777776666655443
No 380
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.76 E-value=0.25 Score=59.02 Aligned_cols=211 Identities=10% Similarity=0.091 Sum_probs=123.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCc---EEEEEeC---CCeEEEEecccCcc-ccc
Q psy9598 529 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFN---YLASTST---DGCIGFWKYKLDID-ISK 601 (1915)
Q Consensus 529 dg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~---~L~sgs~---DgtI~iWDl~~~~~-~~~ 601 (1915)
...++++....+-+.|||+ +|+.++.+.. +.++.|..-|.-.-++. ++++... +++|++|++..... +..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456666667788999999 8999988864 56777777662100111 2333333 57999997742211 111
Q ss_pred eecc-CccccccccCCCCCceEEEEE--CCC-Cc-EEEEEeCCCeEEEEEecCCC----CCceeEEeccCCCCeeEEEEc
Q psy9598 602 TVFH-EPVMFNERIRPGNAHILCSSF--SPG-GL-FLATGSGDHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 602 ~~~~-~~~~~~~~~~~~~~~V~~l~f--spd-g~-~Lasgs~Dg~I~IwDl~~~~----~~~~i~~l~~h~~~V~sl~fs 672 (1915)
.... .+. ......++.+|+ ++. +. ++++...+|.+..|++.... ....+..+.- .+.+-.+...
T Consensus 116 i~~~~~pv------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvD 188 (355)
T 3amr_A 116 MTDPDHPI------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAAD 188 (355)
T ss_dssp CSCTTSCE------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEE
T ss_pred ccccccCc------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEc
Confidence 1000 010 001134555666 774 43 68888889999999984321 2233444433 4578888888
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCc---eEEeeecccccCCCCccccccccccccEEEEEE--CCCCC-EEEEEEecCCeE
Q psy9598 673 HSHLRFVSGSRDGTALIWYYKCSQ---WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW--DASDR-WVITAINFNFQI 746 (1915)
Q Consensus 673 pdg~~L~sgs~DG~I~IWDl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~--spdg~-~L~t~s~~Dg~I 746 (1915)
+...+|+.+-.+..|..++..... ...+. ..........+..|++ .++++ +|++++..++.+
T Consensus 189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~------------~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVID------------RADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY 256 (355)
T ss_dssp TTTTEEEEEETTTEEEEEECSTTSCSCCEEEE------------EBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred CCCCeEEEecccceEEEEeCCcCCCCCceEEE------------EecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence 888899999998654444433111 00000 0011112235666776 56666 888888668899
Q ss_pred EEEECC-CCceEEEee
Q psy9598 747 KIWDAF-NGDLVQVLK 761 (1915)
Q Consensus 747 ~vwD~~-tg~~i~~l~ 761 (1915)
.|||.. +.+.+..|.
T Consensus 257 ~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 257 AIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEESSTTCCEEEEEE
T ss_pred EEEECCCCCcEEEEEE
Confidence 999986 556665554
No 381
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.67 E-value=0.11 Score=61.74 Aligned_cols=174 Identities=10% Similarity=0.047 Sum_probs=113.4
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEE---CCCCC
Q psy9598 659 VEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW---DASDR 734 (1915)
Q Consensus 659 l~~h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~---spdg~ 734 (1915)
+......--++.|+.....|+.++ ..|+|..|+...+....+.. +.. .........+..|.| .++++
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~------~~~---s~~g~~~~~~sGl~~~~~D~~gr 78 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI------DGA---SSNGDGEQQMSGLSLLTHDNSKR 78 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC------TTT---CCSSCCSEEEEEEEESSSSSCCE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec------CCc---cccCCCcceeeEEEEeccCCCCc
Confidence 344444556788988666666666 78999999987554332210 000 000112234578999 68877
Q ss_pred EEEEEEe------------cCCeEEEEECC---CCceEEEee--CC-----------CCCeEEEEEccCCCCEEEEEecC
Q psy9598 735 WVITAIN------------FNFQIKIWDAF---NGDLVQVLK--GH-----------TNEVFVLESHPFDSRVLLSAGHD 786 (1915)
Q Consensus 735 ~L~t~s~------------~Dg~I~vwD~~---tg~~i~~l~--gH-----------~~~V~sl~~sp~dg~~LaSgs~D 786 (1915)
+++++.. .+..|..||+. +++.+.... .. ......+++.+ +|+..++++.-
T Consensus 79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~ 157 (334)
T 2p9w_A 79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALG 157 (334)
T ss_dssp EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEES
T ss_pred EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCC
Confidence 7775431 15789999999 887766554 11 12478999999 99999998888
Q ss_pred -ceEEEEECCCCccccceeee-eeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 787 -GLIIIWDILSSKQRGYKWFH-NIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 787 -G~I~IWdl~s~~~~~~~~~~-~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
+.|...+..... +..+. ...........+.++++|+|..|++....|.|..||+..
T Consensus 158 ~~~I~rV~pdG~~---~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 158 MPAIARVSADGKT---VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCEEEEECTTSCC---EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCeEEEEeCCCCE---EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 887777765432 22221 110111223467899999999999998899999999883
No 382
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.58 E-value=0.85 Score=55.29 Aligned_cols=244 Identities=12% Similarity=0.024 Sum_probs=122.4
Q ss_pred CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC---CcEEEEE
Q psy9598 560 QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATG 636 (1915)
Q Consensus 560 ~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd---g~~Lasg 636 (1915)
-...++|+|.|+ +. |+++..+|.|.+++. .+. ......+ ...........|+|+|+ +..|.++
T Consensus 28 l~~P~~ia~~pd----G~-l~V~e~~g~I~~~d~-~G~---~~~~~~~-----v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 28 LEVPWSIAPLGG----GR-YLVTERPGRLVLISP-SGK---KLVASFD-----VANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp CSCEEEEEEEET----TE-EEEEETTTEEEEECS-SCE---EEEEECC-----CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCCeEEEEcCC----Ce-EEEEeCCCEEEEEeC-CCc---eEeeccc-----eeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 445789999984 35 555566699998873 332 1111111 11122356889999997 4444443
Q ss_pred eC----C----CeEEEEEecCCC-C---CceeEE-ecc-CCCCeeEEEEcCCCCEEEEEeCC-------------CcEEE
Q psy9598 637 SG----D----HHVRVYKMDGVD-S---PLGILE-VEE-HSDKVDSIQWSHSHLRFVSGSRD-------------GTALI 689 (1915)
Q Consensus 637 s~----D----g~I~IwDl~~~~-~---~~~i~~-l~~-h~~~V~sl~fspdg~~L~sgs~D-------------G~I~I 689 (1915)
.. + +.|..|+..... . ...+.. +.. .......|+|.|+|.++++.+.. |.|.-
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 32 3 567777774321 0 111111 221 11234679999999866664332 22332
Q ss_pred EEccCCceEEeeecccccCCCCcc---ccccccccccEEEEEECC-CCCEEEEEEecCC--eEEEEECCC--------C-
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKE---TSDETNKKIKVTMVAWDA-SDRWVITAINFNF--QIKIWDAFN--------G- 754 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~V~~va~sp-dg~~L~t~s~~Dg--~I~vwD~~t--------g- 754 (1915)
++... ..+.... .............++|++ +|.++++-...+. .|.+..... +
T Consensus 174 i~~dG------------~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~ 241 (354)
T 3a9g_A 174 VDEEG------------RPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGK 241 (354)
T ss_dssp ECTTS------------CCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSC
T ss_pred EcCCC------------CCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCC
Confidence 22211 0000000 000000112245689999 5554444332121 233322100 0
Q ss_pred -------ceEEEe-eCCCCCeEEEEEcc------CCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEE
Q psy9598 755 -------DLVQVL-KGHTNEVFVLESHP------FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDG 820 (1915)
Q Consensus 755 -------~~i~~l-~gH~~~V~sl~~sp------~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~v 820 (1915)
.++..+ ..| .....++|.. .++.++++.-..+.|...++..... +.....++.+ ..+.+.++
T Consensus 242 ~~~~~~~~p~~~~~~~~-~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~--~~~~~~~~~~-~~~rp~~v 317 (354)
T 3a9g_A 242 AGRGEFVDPVIDTGSET-WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNME--VRKISTFFKN-VFGRLRDV 317 (354)
T ss_dssp CCCTTSCCCSEECTTCC-CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGC--EEEEEEECTT-TSCCEEEE
T ss_pred CCCCCCcCCEeecCCCC-cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCc--ccceeeeccC-CCCCeeEE
Confidence 123333 223 3467788831 2567777766677888888875322 2112222222 24678999
Q ss_pred EEcCCCCEEEEEe
Q psy9598 821 KWSPDGTTCALTD 833 (1915)
Q Consensus 821 afSpdg~~Lasg~ 833 (1915)
++.|||.++++..
T Consensus 318 ~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 318 VIDDDGGILISTS 330 (354)
T ss_dssp EECTTSCEEEEEC
T ss_pred EECCCCcEEEEEe
Confidence 9999998777664
No 383
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.55 E-value=1.9 Score=50.67 Aligned_cols=263 Identities=8% Similarity=0.060 Sum_probs=152.2
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
..|.|.|+..+..+..-.-.. -+.-.+|.. ..|+.-. ..++.++|+.+...+....+. .
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~A---dsAIMnP~~----~ViALra-g~~LQiFnletK~klks~~~~-------------e 107 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISA---DSAIMNPAS----KVIALKA-GKTLQIFNIEMKSKMKAHTMT-------------D 107 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCC---SEEEECSSS----SEEEEEE-TTEEEEEETTTTEEEEEEECS-------------S
T ss_pred CEEEEEECCCCCCcccccccc---ceeeeCCCc----cEEEEec-CCeEEEechHHhhhhcceecC-------------C
Confidence 378888988765442211111 233456743 5555554 688999999998776666665 3
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC--CCCeeEEEEcCCCCEEEEEeC-------CCcEEEE
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH--SDKVDSIQWSHSHLRFVSGSR-------DGTALIW 690 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h--~~~V~sl~fspdg~~L~sgs~-------DG~I~IW 690 (1915)
.|.--.|-....+-++. +..|+.|++.+...+..++...+. ...|..-..+++.++++..+- .|.+.+|
T Consensus 108 ~VvfWkWis~~~L~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY 185 (365)
T 2xzh_A 108 DVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 185 (365)
T ss_dssp CEEEEEECSSSEEEEEE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEE
T ss_pred ccEEEEecCCCeEEEEc--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEE
Confidence 45555665554333332 347999999765566655544322 345666677888887665442 3677888
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCC--CCEEE-EEEe--cCCeEEEEECCCC---c------e
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS--DRWVI-TAIN--FNFQIKIWDAFNG---D------L 756 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd--g~~L~-t~s~--~Dg~I~vwD~~tg---~------~ 756 (1915)
....+....+ .+|......+.+..+ ...|+ .+.. ..+.++|.++... . .
T Consensus 186 S~er~~sQ~i-----------------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~ 248 (365)
T 2xzh_A 186 SVDRKVSQPI-----------------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKA 248 (365)
T ss_dssp ETTTTEEEEE-----------------CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEE
T ss_pred eeccccccee-----------------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccccc
Confidence 7765542221 112222211111110 01111 1111 1257888887432 1 1
Q ss_pred EEEeeC---CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe
Q psy9598 757 VQVLKG---HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 833 (1915)
Q Consensus 757 i~~l~g---H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~ 833 (1915)
+..+-. -.+--.++.+++ ...++..-..-|.|++||+.++.+ +..-. .....|+..+-+....=+++..
T Consensus 249 vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~--i~~nr-----IS~d~iF~ta~~~~~~Gi~~Vn 320 (365)
T 2xzh_A 249 VDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTC--IYMNR-----ISGETIFVTAPHEATAGIIGVN 320 (365)
T ss_dssp EEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCE--EEEEE-----CCSSCEEEEEEEGGGTEEEEEE
T ss_pred ceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcE--EEEec-----cCCCceEEecccCCCCcEEEEc
Confidence 111111 133445677787 677888889999999999999988 33322 2345677666665555566666
Q ss_pred CCCeEEEEeCCCCcccc
Q psy9598 834 SYGHLLVYGLGGFKRPQ 850 (1915)
Q Consensus 834 ~dG~I~Iwdl~s~~~~~ 850 (1915)
..|.|.-..++....+.
T Consensus 321 r~GqVl~v~v~~~~ivp 337 (365)
T 2xzh_A 321 RKGQVLSVCVEEENIIP 337 (365)
T ss_dssp TTCEEEEEEECTTTHHH
T ss_pred CCCEEEEEEECcccEeh
Confidence 88988888887765443
No 384
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.50 E-value=0.7 Score=56.04 Aligned_cols=239 Identities=13% Similarity=0.035 Sum_probs=120.9
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCc-EEEEEe---CCCCCEEEEEEeCC---CCEEEEEeC----C----C
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-LLATLR---GCSGEISDIAIDNR---NILLAAGTV----D----K 540 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~-~~~~l~---gH~~~I~~Lafspd---g~~LaSgs~----D----g 540 (1915)
...-++|+|.|+|++++ +..+|.|.+++ .++. .+..+. ........|+|+|+ +..|+.+.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999997555 55679999997 4565 222221 12356899999997 444544332 3 5
Q ss_pred cEEEEECCCC--c-----eE-EEeec-CCCCeEEEEeccCccCCCcEEEEEeCC-------------CeEEEEecccCcc
Q psy9598 541 TIRIWNLQTL--A-----PI-SVLVG-HQGIITGVNFCPLEVNGFNYLASTSTD-------------GCIGFWKYKLDID 598 (1915)
Q Consensus 541 tIrVWDl~tg--~-----~~-~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~D-------------gtI~iWDl~~~~~ 598 (1915)
.|..|++... . .+ ..+.. .......|+|.|+ +.++++.+.. |.|.-++.....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD----G~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~- 180 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD----GMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP- 180 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT----SCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC-
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC----CcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC-
Confidence 6777777643 1 11 11221 1113467899884 3555554321 344444433210
Q ss_pred ccceeccCccccccccCCCCCceEEEEECC-CCcEEEEEeCCC---eEEEEEecCCC--------------CCceeEEec
Q psy9598 599 ISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDH---HVRVYKMDGVD--------------SPLGILEVE 660 (1915)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~Dg---~I~IwDl~~~~--------------~~~~i~~l~ 660 (1915)
....+......+..+......++|+| +|.++++-.... .|.+... +.. ....+..+.
T Consensus 181 ----p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~ 255 (354)
T 3a9g_A 181 ----PADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTG 255 (354)
T ss_dssp ----CTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred ----CCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecC
Confidence 00000000011111123456899999 666555433222 2333221 100 001222231
Q ss_pred cCCCCeeEEEEc-------CCCCEEEEEeCCCcEEEEEccCC-ceEEeeecccccCCCCccccccccccccEEEEEECCC
Q psy9598 661 EHSDKVDSIQWS-------HSHLRFVSGSRDGTALIWYYKCS-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 732 (1915)
Q Consensus 661 ~h~~~V~sl~fs-------pdg~~L~sgs~DG~I~IWDl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd 732 (1915)
........++|. .+|.+|++....+.|...++... ...... .........+..+++.|+
T Consensus 256 ~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~-------------~~~~~~~~rp~~v~~~pD 322 (354)
T 3a9g_A 256 SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS-------------TFFKNVFGRLRDVVIDDD 322 (354)
T ss_dssp TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE-------------EECTTTSCCEEEEEECTT
T ss_pred CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee-------------eeccCCCCCeeEEEECCC
Confidence 123457788883 45666666666677777776542 111000 000112346788999999
Q ss_pred CCEEEEE
Q psy9598 733 DRWVITA 739 (1915)
Q Consensus 733 g~~L~t~ 739 (1915)
|.+.++.
T Consensus 323 G~lyv~~ 329 (354)
T 3a9g_A 323 GGILIST 329 (354)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 8765554
No 385
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.49 E-value=0.0048 Score=82.36 Aligned_cols=213 Identities=8% Similarity=-0.080 Sum_probs=118.5
Q ss_pred CceEEEEECCCCcEEEEE-eCCCeEEEEEecCCCC-CceeEEeccCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEccCC
Q psy9598 619 AHILCSSFSPGGLFLATG-SGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCS 695 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasg-s~Dg~I~IwDl~~~~~-~~~i~~l~~h~~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~~~ 695 (1915)
..+..++|++.+..|+.+ ...+.|+.+++.+... ......+.........|++.+. +.++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345678898866555554 4567899999854110 0111111111223566788754 445555566788999887755
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC-CeEEEEECCCCceEEEeeCCCCCeEEEEEcc
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 774 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D-g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp 774 (1915)
....+.. ........|+++|.+.+|+.+.... +.|.++++........+...-...+.|+|+|
T Consensus 486 ~~~~l~~----------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~ 549 (699)
T 1n7d_A 486 KRKTLFR----------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 549 (699)
T ss_dssp CEEEECC----------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECT
T ss_pred ceEEEEe----------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEec
Confidence 4222110 0112235678888777666655323 6788877653222222222233467899998
Q ss_pred CCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCC
Q psy9598 775 FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 853 (1915)
Q Consensus 775 ~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~ 853 (1915)
..+.++++-+..+.|.++++..... ..+.. ..........+++..+ .++++....+.|..++..+++.+..+.
T Consensus 550 ~~~~LY~aD~~~~~I~~~d~dG~~~---~~~~~--~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 550 LSGRLYWVDSKLHSISSIDVNGGNR---KTILE--DEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTCCEEEEETTTTEEEEECSSSSCC---EEECC--CSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred cCCEEEEEecCCCeEEEEccCCCce---EEEEe--cCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 5567777777788999999975433 22211 0111223445555443 334444456789999987776655553
No 386
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.46 E-value=0.01 Score=79.26 Aligned_cols=228 Identities=12% Similarity=-0.051 Sum_probs=124.9
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
.+.|++.++.+......+.. ...+.+|+|.+.. +.++++-...+.|..+++.+........ ..+....
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~---~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--------~~i~~~~ 452 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVAS---NRIYWSDLSQRMICSTQLDRAHGVSSYD--------TVISRDI 452 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTT---TEEEECCTTTTSBEEEESCCCCC-CCCC--------CBCCSCC
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEcccccc---CeEEEEecCCCeEEEEecCCCCCCcceE--------EEEeCCC
Confidence 45788888877655444332 3456788898732 3444444566788888886521000000 0000111
Q ss_pred CceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEe-CC-CcEEEEEccCC
Q psy9598 619 AHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RD-GTALIWYYKCS 695 (1915)
Q Consensus 619 ~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs-~D-G~I~IWDl~~~ 695 (1915)
.....|++.+. +.++++-...+.|.++++.+.. ....+.........|+++|.+.+|+.+. .. +.|.++++...
T Consensus 453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~---~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC---EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc---eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 23456788754 4555555667889999884321 1111222234567888988655444433 22 56666655432
Q ss_pred ceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC--CCCCeEEEEEc
Q psy9598 696 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG--HTNEVFVLESH 773 (1915)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g--H~~~V~sl~~s 773 (1915)
....+. .......+.|+|++++..|+.+....+.|.++++........+.. ......+|++.
T Consensus 530 ~~~~l~----------------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd 593 (699)
T 1n7d_A 530 DIYSLV----------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 593 (699)
T ss_dssp CCCEES----------------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE
T ss_pred CeeEEE----------------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEE
Confidence 211100 001223456999998888887776678999999864333333221 12233455554
Q ss_pred cCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 774 PFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 774 p~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
. +.++++....+.|..++..++..
T Consensus 594 ~--~~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 594 E--DKVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp T--TEEEEECSTTTCEEEEETTTEEE
T ss_pred C--CEEEEEeCCCCeEEEEEccCCCc
Confidence 4 35566666677888888766654
No 387
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.41 E-value=2.8 Score=51.13 Aligned_cols=262 Identities=8% Similarity=0.061 Sum_probs=149.7
Q ss_pred CCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCC
Q psy9598 539 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 618 (1915)
Q Consensus 539 DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1915)
+..|.|.|+..+..+..-.-. --+.-.+|.. ..|+.-. ..++.+||+.+...+....+..+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~----~iiALra-g~~lQiFnle~K~klks~~~~e~----------- 107 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPAS----KVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----------- 107 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSS----SCEEEEE-TTEEEEEETTTTEEEEEEECSSC-----------
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCC----cEEEEec-CCeEEEEchHHhhhhcceecCCC-----------
Confidence 347888888876544221111 1234456643 5555554 78999999999877766666532
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccC--CCCeeEEEEcCCCCEEEEEe-------CCCcEEE
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH--SDKVDSIQWSHSHLRFVSGS-------RDGTALI 689 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h--~~~V~sl~fspdg~~L~sgs-------~DG~I~I 689 (1915)
|.--.|-... .|+.. .+..|+.|++.+...+..++...+. ...|..-..+++.++++..+ -.|.+.+
T Consensus 108 --VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 183 (494)
T 1bpo_A 108 --VTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (494)
T ss_dssp --CCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred --ceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence 3333443333 23333 2458999999765556655544322 34566677788888776544 2367888
Q ss_pred EEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCC--CEEEE-EEe--cCCeEEEEECCCC---c------
Q psy9598 690 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD--RWVIT-AIN--FNFQIKIWDAFNG---D------ 755 (1915)
Q Consensus 690 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg--~~L~t-~s~--~Dg~I~vwD~~tg---~------ 755 (1915)
|....+.... ..+|......+.+..+. ..|++ +.. ..+.++|.++... .
T Consensus 184 YS~er~~sQ~-----------------ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk 246 (494)
T 1bpo_A 184 YSVDRKVSQP-----------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK 246 (494)
T ss_dssp EESTTCCEEE-----------------ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE
T ss_pred eeccccccch-----------------heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce
Confidence 8776654222 12222222222221111 11221 111 1367888887532 1
Q ss_pred eEEEee---CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEE
Q psy9598 756 LVQVLK---GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 832 (1915)
Q Consensus 756 ~i~~l~---gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg 832 (1915)
.+..+- .-.+--.++.+++ ...++..-..-|.|++||+.++.+ +..-. .....|+..+-+....=+++.
T Consensus 247 ~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~--i~~nr-----Is~~~iF~t~~~~~~~Gi~~V 318 (494)
T 1bpo_A 247 AVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTC--IYMNR-----ISGETIFVTAPHEATAGIIGV 318 (494)
T ss_dssp EEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCE--EEEEE-----CCSSCEEEEEEETTTTEEEEE
T ss_pred eeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEeccccee--eeeec-----ccCCceEEecccCCCCcEEEE
Confidence 111111 1133446777888 777888899999999999999988 33222 233556666666655556666
Q ss_pred eCCCeEEEEeCCCCcc
Q psy9598 833 DSYGHLLVYGLGGFKR 848 (1915)
Q Consensus 833 ~~dG~I~Iwdl~s~~~ 848 (1915)
...|.|.-..++....
T Consensus 319 nr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 319 NRKGQVLSVCVEEENI 334 (494)
T ss_dssp ETTCEEEEEEECTTTH
T ss_pred ccCceEEEEEEccccc
Confidence 6778887777766543
No 388
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.26 E-value=1.1 Score=54.38 Aligned_cols=243 Identities=11% Similarity=0.054 Sum_probs=121.2
Q ss_pred CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC---CcEEEEE
Q psy9598 560 QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATG 636 (1915)
Q Consensus 560 ~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd---g~~Lasg 636 (1915)
-...++|+|.|+ +. |+++..+|.|.+++ .+.. ......+ ...........++|+|+ +..|.++
T Consensus 30 l~~P~~ia~~pd----G~-l~V~e~~g~I~~i~--~g~~--~~~~~~~-----v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 30 LEVPWALAFLPD----GG-MLIAERPGRIRLFR--EGRL--STYAELS-----VYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp CSCEEEEEECTT----SC-EEEEETTTEEEEEE--TTEE--EEEEECC-----CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCceEEEEcCC----Ce-EEEEeCCCeEEEEE--CCCc--cEeecce-----EeecCCCCceeEEECCCCCCCCEEEEE
Confidence 345689999984 35 45556679999988 3321 1111111 11123356889999998 4444444
Q ss_pred eC-C-----CeEEEEEecCCC--CCceeEE-ec---cCCCCeeEEEEcCCCCEEEEEeCC-------------CcEEEEE
Q psy9598 637 SG-D-----HHVRVYKMDGVD--SPLGILE-VE---EHSDKVDSIQWSHSHLRFVSGSRD-------------GTALIWY 691 (1915)
Q Consensus 637 s~-D-----g~I~IwDl~~~~--~~~~i~~-l~---~h~~~V~sl~fspdg~~L~sgs~D-------------G~I~IWD 691 (1915)
.. . +.|..|+..... ....+.. +. +.......|+|.|+|.++++.+.. |.|.-++
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~ 175 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLT 175 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEc
Confidence 33 2 577788874321 1111221 32 111234689999999766654322 3333333
Q ss_pred ccCCceEEeeecccccCCCCcc--------ccccccccccEEEEEECC-CCCEEEEEEecCCe--------EEEEECCC-
Q psy9598 692 YKCSQWRFIRLDMNTCLPHTKE--------TSDETNKKIKVTMVAWDA-SDRWVITAINFNFQ--------IKIWDAFN- 753 (1915)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~V~~va~sp-dg~~L~t~s~~Dg~--------I~vwD~~t- 753 (1915)
... ..+.... .............++|++ +|.++++-.. ... |.+.....
T Consensus 176 ~dG------------~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~n 242 (352)
T 2ism_A 176 PEG------------EPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGN 242 (352)
T ss_dssp TTS------------SBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCB
T ss_pred CCC------------CCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCc
Confidence 221 0000000 000000112356689999 5555444333 332 33322110
Q ss_pred ---------------CceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc-ceeeeeeecCCCCcce
Q psy9598 754 ---------------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG-YKWFHNIVEGQGEGAL 817 (1915)
Q Consensus 754 ---------------g~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~-~~~~~~~~~~~~~~~V 817 (1915)
..++..+..| .....++|. ++.++++.-..+.|...++....... ......++ ...+.+
T Consensus 243 yGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp 317 (352)
T 2ism_A 243 YGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRL 317 (352)
T ss_dssp CCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCE
T ss_pred CCCCcccCCCCCCCCcCCeEecCCC-CCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCe
Confidence 0123333223 345677773 56777666667778877776443200 00112222 123678
Q ss_pred EEEEEcCCCCEEEEEeC
Q psy9598 818 FDGKWSPDGTTCALTDS 834 (1915)
Q Consensus 818 ~~vafSpdg~~Lasg~~ 834 (1915)
.++++.|||.++++...
T Consensus 318 ~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 318 REVQVGPDGALYVTTSN 334 (352)
T ss_dssp EEEEECTTSCEEEEECS
T ss_pred eEEEECCCCcEEEEEeC
Confidence 99999999987777643
No 389
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.20 E-value=1.2 Score=55.82 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=60.7
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE--EEEeC------CCCCEEEEEEeCC---CCEEEEEe-C-----
Q psy9598 476 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL--ATLRG------CSGEISDIAIDNR---NILLAAGT-V----- 538 (1915)
Q Consensus 476 ~~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~--~~l~g------H~~~I~~Lafspd---g~~LaSgs-~----- 538 (1915)
...-++|+|.|+|+++++-...+.|.+++..++... ..+.. ..+.+..|+|+|+ +..|..+. .
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 456779999999997776544457998887666543 23321 2456889999995 44454443 2
Q ss_pred -------CCcEEEEECCCC--c-----eEEE-ee-cCCCCeEEEEeccCccCCCcEEEEEe
Q psy9598 539 -------DKTIRIWNLQTL--A-----PISV-LV-GHQGIITGVNFCPLEVNGFNYLASTS 583 (1915)
Q Consensus 539 -------DgtIrVWDl~tg--~-----~~~~-l~-~h~~~V~sl~fsp~~~~d~~~L~sgs 583 (1915)
...|.-|++..+ . .+.. +. ........|+|.|+ +.++++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pD----G~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPD----QKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTT----SCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCC----CeEEEEEC
Confidence 134555554322 1 1111 21 11234688999984 35555544
No 390
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.19 E-value=1.2 Score=54.01 Aligned_cols=250 Identities=10% Similarity=0.031 Sum_probs=121.6
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEE-------eCCCCCEEEEEEeCC---CCEEEEE-eC-------
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-------RGCSGEISDIAIDNR---NILLAAG-TV------- 538 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l-------~gH~~~I~~Lafspd---g~~LaSg-s~------- 538 (1915)
..-+.|+|.|+|++|+++...|.|++++. .+.....+ .........|+|+|+ +..|..+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 45689999999993445567899999985 44332111 112346789999996 4444443 32
Q ss_pred CCcEEEEECCCC--c--eEEE-eec------CCCCeEEEEeccCccCCCcEEEEEeCC-------------CeEEEEecc
Q psy9598 539 DKTIRIWNLQTL--A--PISV-LVG------HQGIITGVNFCPLEVNGFNYLASTSTD-------------GCIGFWKYK 594 (1915)
Q Consensus 539 DgtIrVWDl~tg--~--~~~~-l~~------h~~~V~sl~fsp~~~~d~~~L~sgs~D-------------gtI~iWDl~ 594 (1915)
...|..|++..+ . .... +.. .......|+|.|+ +.++++.+.. |.|.-++..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd----G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK----GYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS----SEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC----CcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666666533 1 1111 111 1112357999984 3555554332 345555544
Q ss_pred cCccccceecc-CccccccccCCCCCceEEEEECC-CCcEEEEEeC-CCeEEEEEecCCCC-------------------
Q psy9598 595 LDIDISKTVFH-EPVMFNERIRPGNAHILCSSFSP-GGLFLATGSG-DHHVRVYKMDGVDS------------------- 652 (1915)
Q Consensus 595 ~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~l~fsp-dg~~Lasgs~-Dg~I~IwDl~~~~~------------------- 652 (1915)
.... ....+. ........+..+......++|+| +|.++++-.. ++.=.|.-+.....
T Consensus 173 G~~p-~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 173 GEIP-DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp SCCC-TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCC-CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 2210 000000 00000111111224578899999 5655444222 11112222111000
Q ss_pred ---------CceeEEeccCCCCeeEEEEcC-------CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccc
Q psy9598 653 ---------PLGILEVEEHSDKVDSIQWSH-------SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSD 716 (1915)
Q Consensus 653 ---------~~~i~~l~~h~~~V~sl~fsp-------dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1915)
...+..+. +...+..++|.. +|.+|++....+.|...++..+...... . .
T Consensus 252 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-~------------~ 317 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDG-R------------I 317 (353)
T ss_dssp CCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEE-E------------E
T ss_pred ccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeE-E------------c
Confidence 01112222 234566777753 4566666666677777766644311100 0 0
Q ss_pred cccccccEEEEEECCCCCEEEEEEecCCeE
Q psy9598 717 ETNKKIKVTMVAWDASDRWVITAINFNFQI 746 (1915)
Q Consensus 717 ~~~~~~~V~~va~spdg~~L~t~s~~Dg~I 746 (1915)
.......+..|++.|+|.+.++....+|.|
T Consensus 318 ~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 318 LTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp SGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred ccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 011234688999999998666544224443
No 391
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.13 E-value=0.25 Score=58.19 Aligned_cols=190 Identities=11% Similarity=0.130 Sum_probs=95.5
Q ss_pred CCEEEEEE-CC-----CcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCc---
Q psy9598 488 GEVIVTGA-DD-----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD-----KTIRIWNLQTLA--- 551 (1915)
Q Consensus 488 g~~LaTGs-~D-----g~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D-----gtIrVWDl~tg~--- 551 (1915)
+.+++.|+ .+ ..+.+||+.+..-... +........++ ..++.+++.|+.+ ..+.+||+.+..
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 44555555 22 3688899887753331 11111111222 2356677777754 468999988765
Q ss_pred eEEE--eecCCCCeEEEEeccCccCCCcEEEEEeCCC-----eEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 552 PISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTDG-----CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 552 ~~~~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg-----tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
-... +........++.+ ++.+++.|+.++ .+.+||+.+......... +. +. ....++
T Consensus 93 W~~~~~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~-------~r-~~~~~~ 156 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL------GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM--QT-------AR-EGAGLV 156 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE------TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC--SS-------CC-BSCEEE
T ss_pred eEECCCCCCCccceeEEEE------CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC--CC-------Cc-ccceEE
Confidence 2222 2111111122222 236777776543 577888776542211111 10 11 111222
Q ss_pred EECCCCcEEEEEeCC-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEccC
Q psy9598 625 SFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYKC 694 (1915)
Q Consensus 625 ~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~~ 694 (1915)
.+ ++.+++.|+.+ ..+.+||+... ....+..+........++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 157 ~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 231 (301)
T 2vpj_A 157 VA--SGVIYCLGGYDGLNILNSVEKYDPHTG-HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT 231 (301)
T ss_dssp EE--TTEEEEECCBCSSCBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred EE--CCEEEEECCCCCCcccceEEEEeCCCC-cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC
Confidence 22 67777777765 35788887432 22222111111111122222 56677777764 4689999999
Q ss_pred CceEEe
Q psy9598 695 SQWRFI 700 (1915)
Q Consensus 695 ~~~~~~ 700 (1915)
..|...
T Consensus 232 ~~W~~~ 237 (301)
T 2vpj_A 232 DSWTTV 237 (301)
T ss_dssp TEEEEE
T ss_pred CcEEEC
Confidence 998764
No 392
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.12 E-value=1.7 Score=52.24 Aligned_cols=266 Identities=12% Similarity=0.035 Sum_probs=125.4
Q ss_pred EEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEE--Ee----ecCCCCeEEEEeccCccCCCcEEEEE--eC
Q psy9598 513 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS--VL----VGHQGIITGVNFCPLEVNGFNYLAST--ST 584 (1915)
Q Consensus 513 ~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~--~l----~~h~~~V~sl~fsp~~~~d~~~L~sg--s~ 584 (1915)
.+...-.....|+|.|+|.+|++--..|.|++++..++.... .+ ....+....|+|+|+-..++.+.++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 343344567899999999988776558999999876665422 22 12345678999998521122333332 23
Q ss_pred CCeEEEEecccCccccceeccCcccccccc-CCCCCceEEEEECCCCcEEEEEeC-------------CCeEEEEEecCC
Q psy9598 585 DGCIGFWKYKLDIDISKTVFHEPVMFNERI-RPGNAHILCSSFSPGGLFLATGSG-------------DHHVRVYKMDGV 650 (1915)
Q Consensus 585 DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~l~fspdg~~Lasgs~-------------Dg~I~IwDl~~~ 650 (1915)
++.|.-|.+..+.... ............+ .........|.|.|+|.+.++.+. .|.|.-++.++.
T Consensus 106 ~~~v~R~~~~~~~~~~-~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 106 DNRIVRMLYDEKKPSG-EQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SEEEEEEEBCTTSCTT-CCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCEEEEEEeCCCCccc-ccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 4555556554421000 0000000000000 011123457999999987776442 244444444321
Q ss_pred C---C---CceeEEeccCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEEccCCceEEeeecccc-cCCCC-cccccccccc
Q psy9598 651 D---S---PLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNT-CLPHT-KETSDETNKK 721 (1915)
Q Consensus 651 ~---~---~~~i~~l~~h~~~V~sl~fspdg~~L~sg-s~DG~I~IWDl~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~ 721 (1915)
- . ...+. ..+|.+ ...|+|+|+|.++++= +.|+.-.|--+..+...-....... ..... ........+.
T Consensus 185 ip~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 185 PAPGNPFPGSPVY-SYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp BCTTCSSTTCCEE-EBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred ccCCCCCCCCeEE-eeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence 0 0 11122 235543 5688999988755543 2333233332332221000000000 00000 0000011111
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc----eEEEeeCCCCCeEEEEEccCCCCEEEEEe
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD----LVQVLKGHTNEVFVLESHPFDSRVLLSAG 784 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~----~i~~l~gH~~~V~sl~~sp~dg~~LaSgs 784 (1915)
.....++|. +|..++.... .+.|....+.... ....+.+..+.+..|++.| +|.++++..
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~-~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLR-GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEEST-TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeecccc-CCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEEEc
Confidence 244556665 3444444333 5556555554332 2233444456788888888 776655543
No 393
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.92 E-value=0.74 Score=55.62 Aligned_cols=193 Identities=12% Similarity=0.075 Sum_probs=106.7
Q ss_pred EEEEEEcCCCCEEEEE------------ECCCcEEEEECCC--CcEE-EEEeC-----CCCCEEEEEEeC--CCC-EEEE
Q psy9598 479 VFCVLFDKLGEVIVTG------------ADDLLIKLWRARD--GKLL-ATLRG-----CSGEISDIAIDN--RNI-LLAA 535 (1915)
Q Consensus 479 V~~vafspdg~~LaTG------------s~Dg~I~IWd~~t--g~~~-~~l~g-----H~~~I~~Lafsp--dg~-~LaS 535 (1915)
.-.|++.++|..++++ ..+|.|.++|+.+ ++.. ..+.+ .......|.+.+ ++. +|+.
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3455667776444443 1689999999873 3321 12333 123567777765 454 4444
Q ss_pred E-eC--CCcEEEEECCCCce----EEEeecC-CCCeEEEEeccCccCCCcEEEEEeC-----------------CCeEEE
Q psy9598 536 G-TV--DKTIRIWNLQTLAP----ISVLVGH-QGIITGVNFCPLEVNGFNYLASTST-----------------DGCIGF 590 (1915)
Q Consensus 536 g-s~--DgtIrVWDl~tg~~----~~~l~~h-~~~V~sl~fsp~~~~d~~~L~sgs~-----------------DgtI~i 590 (1915)
+ .. +.+|.||++..+.. +..+.+. -...+.+.+.+. +.++++... .|.|..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~----G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP----EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET----TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCC----CCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 4 22 56788888764322 2233332 245788888874 355555431 133333
Q ss_pred EecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-CCCeEEEEEecCCCCCceeEEeccCCCCeeEE
Q psy9598 591 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSI 669 (1915)
Q Consensus 591 WDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl 669 (1915)
++. +.. . .. ...-...+.++|+|+++.|+++. ..+.|..|++...........+ ...+....+
T Consensus 208 ~d~--~~~-~-~~-----------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi 271 (355)
T 3sre_A 208 YSP--NDV-R-VV-----------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNI 271 (355)
T ss_dssp ECT--TCC-E-EE-----------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEE
T ss_pred EEC--CeE-E-Ee-----------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceE
Confidence 332 211 0 00 01124568899999998776654 5689999999643222222223 234667889
Q ss_pred EEcC-CCCEEEEEeCC-CcEEEEE
Q psy9598 670 QWSH-SHLRFVSGSRD-GTALIWY 691 (1915)
Q Consensus 670 ~fsp-dg~~L~sgs~D-G~I~IWD 691 (1915)
++.. +|.+.+++..+ +.|..|+
T Consensus 272 ~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 272 SVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EECTTTCCEEEEEESCHHHHHSCC
T ss_pred EEeCCCCcEEEEecCCceEEEEEC
Confidence 9998 59877766544 3444443
No 394
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.89 E-value=5.6 Score=49.75 Aligned_cols=116 Identities=14% Similarity=0.021 Sum_probs=63.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceE--EEeec------CCCCeEEEEeccCccCCCcEEEEEeC-----
Q psy9598 518 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPI--SVLVG------HQGIITGVNFCPLEVNGFNYLASTST----- 584 (1915)
Q Consensus 518 ~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~--~~l~~------h~~~V~sl~fsp~~~~d~~~L~sgs~----- 584 (1915)
-.....|+|.|+|+++++-...+.|++++..++... ..+.. ..+.+..|+|+|+-..++.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999998877554457888887655532 22221 23567799999953223344444332
Q ss_pred -------CCeEEEEecccCccccceeccCcccccccc-CCCCCceEEEEECCCCcEEEEEe
Q psy9598 585 -------DGCIGFWKYKLDIDISKTVFHEPVMFNERI-RPGNAHILCSSFSPGGLFLATGS 637 (1915)
Q Consensus 585 -------DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~l~fspdg~~Lasgs 637 (1915)
...|.-|++..... .+. ....+...+ .........|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~--~~~--~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTD--TLE--KPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTT--EEE--EEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCC--CcC--CcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 23455555433211 000 000000000 11123478899999998777644
No 395
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.81 E-value=0.29 Score=57.71 Aligned_cols=228 Identities=11% Similarity=0.048 Sum_probs=112.2
Q ss_pred CEEEEEEC--CCcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCCCceEEE--eec
Q psy9598 489 EVIVTGAD--DLLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD----KTIRIWNLQTLAPISV--LVG 558 (1915)
Q Consensus 489 ~~LaTGs~--Dg~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D----gtIrVWDl~tg~~~~~--l~~ 558 (1915)
.+++.|+. ...+.+||..+..-... +......-.++. -++.+++.|+.+ ..+.+||+.+..-... +..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555554 35788999887754322 111111112222 356677777754 5688899887653222 211
Q ss_pred CCCCeEEEEeccCccCCCcEEEEEeCC------CeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcE
Q psy9598 559 HQGIITGVNFCPLEVNGFNYLASTSTD------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 632 (1915)
Q Consensus 559 h~~~V~sl~fsp~~~~d~~~L~sgs~D------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~ 632 (1915)
......++.+ ++.+++.|+.+ ..+.+||+.+...... ...+. +. ....++.+ ++.+
T Consensus 91 ~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~--~~~p~-------~r-~~~~~~~~--~~~i 152 (306)
T 3ii7_A 91 PRDSLAACAA------EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK--PSMLT-------QR-CSHGMVEA--NGLI 152 (306)
T ss_dssp CCBSCEEEEE------TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE--CCCSS-------CC-BSCEEEEE--TTEE
T ss_pred cccceeEEEE------CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC--CCCcC-------Cc-ceeEEEEE--CCEE
Confidence 1111122222 23677777765 4578888876642111 11010 00 11122222 6667
Q ss_pred EEEEeC---------CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEccCCceE
Q psy9598 633 LATGSG---------DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYKCSQWR 698 (1915)
Q Consensus 633 Lasgs~---------Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~~~~~~ 698 (1915)
++.|+. -..+.+||+... ....+..+...... .+++.. ++.+++.|+.+ ..+.+||+.+..|.
T Consensus 153 yv~GG~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 153 YVCGGSLGNNVSGRVLNSCEVYDPATE-TWTELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp EEECCEESCTTTCEECCCEEEEETTTT-EEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred EEECCCCCCCCcccccceEEEeCCCCC-eEEECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence 777764 345778887432 11122111111111 122222 56677777654 35889999999887
Q ss_pred EeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe----cCCeEEEEECCCCc
Q psy9598 699 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN----FNFQIKIWDAFNGD 755 (1915)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~----~Dg~I~vwD~~tg~ 755 (1915)
.+.. .+. ......++.+ ++..++.|+. .-..|.+||+.+.+
T Consensus 230 ~~~~-----~p~---------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 230 MVSP-----MPW---------KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp ECCC-----CSC---------CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ECCC-----CCC---------CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 6421 110 1111222333 5666666663 12467888887654
No 396
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.80 E-value=2.2 Score=51.62 Aligned_cols=71 Identities=24% Similarity=0.269 Sum_probs=43.7
Q ss_pred CCeEEEEEcc------CCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe-CCCe
Q psy9598 765 NEVFVLESHP------FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SYGH 837 (1915)
Q Consensus 765 ~~V~sl~~sp------~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~-~dG~ 837 (1915)
..+..+.|.. ..+.++++.-..+.|...++..+.. ... ..++. .....+.++++.|||.++++.+ .+|.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~--~~~-~~~~~-~~~~rp~~v~~~pdG~lyv~td~~~g~ 346 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV--TED-GRILT-DRGQRIRDVRTGPDGYLYVLTDESSGE 346 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE--EEE-EEESG-GGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE--eee-EEccc-CCCCceeEEEECCCCcEEEEEeCCCCE
Confidence 3567777764 1366777666778888888775433 211 11221 2235789999999999777655 4554
Q ss_pred EE
Q psy9598 838 LL 839 (1915)
Q Consensus 838 I~ 839 (1915)
|+
T Consensus 347 I~ 348 (353)
T 2g8s_A 347 LL 348 (353)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 397
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.78 E-value=0.34 Score=57.06 Aligned_cols=189 Identities=14% Similarity=0.180 Sum_probs=92.1
Q ss_pred CEEEEEECC----CcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCceEEE--
Q psy9598 489 EVIVTGADD----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD-----KTIRIWNLQTLAPISV-- 555 (1915)
Q Consensus 489 ~~LaTGs~D----g~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D-----gtIrVWDl~tg~~~~~-- 555 (1915)
.+++.|+.+ ..+.+||+.+..-... +......-..+. -++.+++.|+.+ ..+.+||+.+..-...
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 344444432 3578888877653322 111111111222 266677777754 3588899877643222
Q ss_pred eecCCCCeEEEEeccCccCCCcEEEEEeCCC-----eEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCC
Q psy9598 556 LVGHQGIITGVNFCPLEVNGFNYLASTSTDG-----CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 630 (1915)
Q Consensus 556 l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg-----tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg 630 (1915)
+........++.+ ++.+++.|+.++ .+.+||+.+....... ..+. + .....++.+ ++
T Consensus 95 ~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~-------~-r~~~~~~~~--~~ 156 (302)
T 2xn4_A 95 MRDRRSTLGAAVL------NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA--PMNT-------R-RSSVGVGVV--GG 156 (302)
T ss_dssp CSSCCBSCEEEEE------TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC--CCSS-------C-CBSCEEEEE--TT
T ss_pred CCccccceEEEEE------CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC--CCCC-------c-ccCceEEEE--CC
Confidence 1111111122222 236777777553 4677787665321111 1010 0 111122222 56
Q ss_pred cEEEEEeCC-------CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEccCCceE
Q psy9598 631 LFLATGSGD-------HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYKCSQWR 698 (1915)
Q Consensus 631 ~~Lasgs~D-------g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~~~~~~ 698 (1915)
.+++.|+.+ ..+.+||+... ....+..+........++.+ ++.+++.|+.+ ..+.+||+.+..|.
T Consensus 157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 157 LLYAVGGYDVASRQCLSTVECYNATTN-EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp EEEEECCEETTTTEECCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred EEEEEeCCCCCCCccccEEEEEeCCCC-cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 677777643 34778887422 11222111111111122222 56777777765 36889999999887
Q ss_pred Ee
Q psy9598 699 FI 700 (1915)
Q Consensus 699 ~~ 700 (1915)
.+
T Consensus 234 ~~ 235 (302)
T 2xn4_A 234 QV 235 (302)
T ss_dssp EE
T ss_pred eC
Confidence 64
No 398
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.70 E-value=0.42 Score=58.25 Aligned_cols=156 Identities=17% Similarity=0.098 Sum_probs=100.2
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCcEEEEEeCC----CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc---------
Q psy9598 485 DKLGEVIVTGADDLLIKLWRARDGKLLATLRGC----SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--------- 551 (1915)
Q Consensus 485 spdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH----~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~--------- 551 (1915)
..+|.-|+.+- ++.||.-++..+...+.+... -..|..+..||+|.+||..+ +..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 34566666664 357777777644434444332 23688899999999999886 5689998886321
Q ss_pred ---eEEEeec------CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceE
Q psy9598 552 ---PISVLVG------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 622 (1915)
Q Consensus 552 ---~~~~l~~------h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 622 (1915)
....+.- ....|..+.|+|.+. .+..|++-..|++|++||+........ .+...... -........|.
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~-~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~-fg~d~~~~ev~ 183 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY-RDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNS-FGLDARVNDIT 183 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBG-GGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSE-EESCSSCCCEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccC-CCCeEEEEecCCEEEEEEcccCCCCCc-chhccccc-cCCCcccceEE
Confidence 1123321 246799999999874 467899999999999999986332222 22111000 01122336788
Q ss_pred EEEECCCCcEEEEEe--CCCeEEEE
Q psy9598 623 CSSFSPGGLFLATGS--GDHHVRVY 645 (1915)
Q Consensus 623 ~l~fspdg~~Lasgs--~Dg~I~Iw 645 (1915)
+++|..+|-.|.+.+ ..|.|+-.
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999887777755 66776544
No 399
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.68 E-value=0.23 Score=58.52 Aligned_cols=191 Identities=9% Similarity=0.021 Sum_probs=98.5
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCc---EEE--EEeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCc
Q psy9598 487 LGEVIVTGADD-----LLIKLWRARDGK---LLA--TLRGCSGEISDIAIDNRNILLAAGTVD-----KTIRIWNLQTLA 551 (1915)
Q Consensus 487 dg~~LaTGs~D-----g~I~IWd~~tg~---~~~--~l~gH~~~I~~Lafspdg~~LaSgs~D-----gtIrVWDl~tg~ 551 (1915)
++.+++.|+.+ ..+.+||+.+.. ... .+......-.++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 46777777755 468999988766 332 22211112222222 56777777654 358889987754
Q ss_pred eEE--EeecCCCCeEEEEeccCccCCCcEEEEEeCC-----CeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 552 PIS--VLVGHQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 552 ~~~--~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D-----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
-.. .+........++.+ ++.+++.|+.+ ..+.+||+.+..-.... ..+. ......++
T Consensus 140 W~~~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~--------~r~~~~~~ 203 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVA------SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT--PMAT--------KRSGAGVA 203 (301)
T ss_dssp EEEEEECSSCCBSCEEEEE------TTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC--CCSS--------CCBSCEEE
T ss_pred EEECCCCCCCcccceEEEE------CCEEEEECCCCCCcccceEEEEeCCCCcEEeCC--CCCc--------ccccceEE
Confidence 322 22211111122222 23677777654 35778887766321111 1000 01111222
Q ss_pred EECCCCcEEEEEeCC-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEccC
Q psy9598 625 SFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYKC 694 (1915)
Q Consensus 625 ~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~~ 694 (1915)
.+ ++.+++.|+.+ ..|.+||+... ....+..+........++.+ ++.+++.|+.+ ..|.+||+.+
T Consensus 204 ~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 204 LL--NDHIYVVGGFDGTAHLSSVEAYNIRTD-SWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp EE--TTEEEEECCBCSSSBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred EE--CCEEEEEeCCCCCcccceEEEEeCCCC-cEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCC
Confidence 22 56777887764 46888888432 22222111111111222222 56677777765 3578889988
Q ss_pred CceEEe
Q psy9598 695 SQWRFI 700 (1915)
Q Consensus 695 ~~~~~~ 700 (1915)
.+|...
T Consensus 279 ~~W~~~ 284 (301)
T 2vpj_A 279 DSWEVV 284 (301)
T ss_dssp TEEEEE
T ss_pred CeEEEc
Confidence 887653
No 400
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.65 E-value=3.5 Score=49.54 Aligned_cols=261 Identities=11% Similarity=0.041 Sum_probs=125.8
Q ss_pred EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC---Cc
Q psy9598 555 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GL 631 (1915)
Q Consensus 555 ~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd---g~ 631 (1915)
++...-...+.|+|.|+ +.+|++--..|.|++++..++... .....+ .....+......|+|+|+ +.
T Consensus 26 ~va~gL~~P~~ia~~pd----G~llVter~~G~I~~v~~~~g~~~--~v~~~~----~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 26 TVATGLNSPWGLAPLPG----GDLLVSSRDEATITRVDAKTGRKT--ELGEVP----GVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp EEECCCSSEEEEEECTT----SCEEEEETTTCEEEEECTTTCCEE--EEEECT----TCCCBTTBSEEEEEECTTHHHHC
T ss_pred EeecCCCCceEEEEcCC----CcEEEEEecCCEEEEEECCCCcEe--eecccC----ceeecCCCCceeeEeccccccCC
Confidence 34444556789999994 466666555899999876544321 110001 111233467899999995 33
Q ss_pred EEEEE---eCCCeEEEEEecCCC-------CCceeE-Eec-cCCCCeeEEEEcCCCCEEEEEeCCCcEEE-EEc--cCCc
Q psy9598 632 FLATG---SGDHHVRVYKMDGVD-------SPLGIL-EVE-EHSDKVDSIQWSHSHLRFVSGSRDGTALI-WYY--KCSQ 696 (1915)
Q Consensus 632 ~Lasg---s~Dg~I~IwDl~~~~-------~~~~i~-~l~-~h~~~V~sl~fspdg~~L~sgs~DG~I~I-WDl--~~~~ 696 (1915)
.|.+. ..++.|.-|.+.... ....+. .+. +.......|+|.|+|.++++.+..+.... -|. ..+.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~ 175 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK 175 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCE
Confidence 34332 234456556654311 122222 122 12223567999999987776543221100 000 0011
Q ss_pred eEEeeecccccCCCC-c---cccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC------------------
Q psy9598 697 WRFIRLDMNTCLPHT-K---ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG------------------ 754 (1915)
Q Consensus 697 ~~~~~~~~~~~~~~~-~---~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg------------------ 754 (1915)
...+ +.....+.. . ......++ .....++|+++|.+.++-...++.-.|--+..|
T Consensus 176 IlRi--~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~ 252 (347)
T 3das_A 176 ILRM--TPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH 252 (347)
T ss_dssp EEEE--CTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred EEEE--eCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence 1111 111111000 0 00011122 234578999987766554332332222211111
Q ss_pred ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe
Q psy9598 755 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 833 (1915)
Q Consensus 755 ~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~ 833 (1915)
.++..+..+......|+|.. +.+++..-..+.|....+..... ......++.+ ..+.+.+|+..|||.++++.+
T Consensus 253 ~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~~~~l~~v~~~~~~~--~~~~e~~l~~-~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 253 DPVAQWSTDEASPSGIAYAE--GSVWMAGLRGERLWRIPLKGTAA--AADPQAFLEG-EYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCSEEECTTTCCEEEEEEET--TEEEEEESTTCSEEEEEEETTEE--SSCCEEESTT-TSSCEEEEEEEETTEEEEEEC
T ss_pred CCcEecCCCCCCCcceEEEc--CceeeccccCCEEEEEEecCCce--ecceEEeecC-CCCCccEEEECCCCcEEEEEc
Confidence 12333333323556777764 56666555556666666654432 1111122222 346899999999998777665
No 401
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.59 E-value=0.4 Score=56.51 Aligned_cols=191 Identities=8% Similarity=0.006 Sum_probs=99.2
Q ss_pred CCCEEEEEECC----CcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC------CcEEEEECCCCceEE
Q psy9598 487 LGEVIVTGADD----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD------KTIRIWNLQTLAPIS 554 (1915)
Q Consensus 487 dg~~LaTGs~D----g~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D------gtIrVWDl~tg~~~~ 554 (1915)
++.+++.|+.+ ..+.+||+.+..-... +........++. -++.+++.|+.+ ..+.+||+.+..-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 46677777754 5788999988754332 221111112222 266777777765 468899988765322
Q ss_pred E--eecCCCCeEEEEeccCccCCCcEEEEEeC---------CCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 555 V--LVGHQGIITGVNFCPLEVNGFNYLASTST---------DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 555 ~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~---------DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
. +........++.+ ++.+++.|+. -..+.+||+.+..-.... ..+. ......+
T Consensus 133 ~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~--------~r~~~~~ 196 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEA------NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC--PMIE--------ARKNHGL 196 (306)
T ss_dssp ECCCSSCCBSCEEEEE------TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC--CCSS--------CCBSCEE
T ss_pred CCCCcCCcceeEEEEE------CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC--Cccc--------hhhcceE
Confidence 2 1111111122222 2366666654 344778888766321111 1000 0111122
Q ss_pred EEECCCCcEEEEEeCC-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEcc
Q psy9598 624 SSFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYK 693 (1915)
Q Consensus 624 l~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~ 693 (1915)
+.+ ++.+++.|+.+ ..|.+||+... ....+..+........++.+ ++.+++.|+.+ ..+.+||+.
T Consensus 197 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 197 VFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN-EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp EEE--TTEEEEECCEETTEEBCCEEEEETTTT-EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred EEE--CCEEEEEeCCCCCCCCceEEEeeCCCC-cEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 222 66777777654 35788887432 12222112111122223333 66778888754 468899999
Q ss_pred CCceEEe
Q psy9598 694 CSQWRFI 700 (1915)
Q Consensus 694 ~~~~~~~ 700 (1915)
+.+|...
T Consensus 272 ~~~W~~~ 278 (306)
T 3ii7_A 272 TDKWVAN 278 (306)
T ss_dssp TTEEEEE
T ss_pred CCeEEeC
Confidence 9988764
No 402
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.34 E-value=0.95 Score=54.67 Aligned_cols=193 Identities=10% Similarity=0.066 Sum_probs=108.0
Q ss_pred eEEEEECCCCcEEEEE------------eCCCeEEEEEecCCCCCceeEEecc-----CCCCeeEEEEcC--CCC--EEE
Q psy9598 621 ILCSSFSPGGLFLATG------------SGDHHVRVYKMDGVDSPLGILEVEE-----HSDKVDSIQWSH--SHL--RFV 679 (1915)
Q Consensus 621 V~~l~fspdg~~Lasg------------s~Dg~I~IwDl~~~~~~~~i~~l~~-----h~~~V~sl~fsp--dg~--~L~ 679 (1915)
.-.+.+.++|..++++ ..+|.|.++|............+.+ .......|.+.+ +|. +++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3456677877554444 1689999999853221112222332 234667777765 353 444
Q ss_pred EEeC--CCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEe----------------
Q psy9598 680 SGSR--DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---------------- 741 (1915)
Q Consensus 680 sgs~--DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~---------------- 741 (1915)
+... +.+|.||++............ . ........+.+++.++|.+.++...
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~---~--------~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKT---I--------RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEE---E--------CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEec---c--------ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 4444 567888887654311111100 0 0112345788899999988776541
Q ss_pred cCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEE-ecCceEEEEECCC-CccccceeeeeeecCCCCcceEE
Q psy9598 742 FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA-GHDGLIIIWDILS-SKQRGYKWFHNIVEGQGEGALFD 819 (1915)
Q Consensus 742 ~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSg-s~DG~I~IWdl~s-~~~~~~~~~~~~~~~~~~~~V~~ 819 (1915)
..|.|+.++. +++. .+...-...+.|+|+| +++.|+.+ +..+.|..|++.. +.......+. ..+..-.
T Consensus 201 ~~g~vyr~d~--~~~~-~~~~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~------~~g~PDG 270 (355)
T 3sre_A 201 AWSFVTYYSP--NDVR-VVAEGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS------FDTLVDN 270 (355)
T ss_dssp CCEEEEEECT--TCCE-EEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE------CSSEEEE
T ss_pred CccEEEEEEC--CeEE-EeecCCcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe------CCCCCce
Confidence 1245666654 3332 2222234578999999 87766655 4578999999864 3221112221 1355677
Q ss_pred EEEcC-CCCEEEEEeC
Q psy9598 820 GKWSP-DGTTCALTDS 834 (1915)
Q Consensus 820 vafSp-dg~~Lasg~~ 834 (1915)
+++.+ +|++.+++..
T Consensus 271 i~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 271 ISVDPVTGDLWVGCHP 286 (355)
T ss_dssp EEECTTTCCEEEEEES
T ss_pred EEEeCCCCcEEEEecC
Confidence 88888 5887776653
No 403
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.31 E-value=0.58 Score=54.97 Aligned_cols=191 Identities=14% Similarity=0.173 Sum_probs=97.3
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCceEE
Q psy9598 487 LGEVIVTGADD-----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVDK-----TIRIWNLQTLAPIS 554 (1915)
Q Consensus 487 dg~~LaTGs~D-----g~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~Dg-----tIrVWDl~tg~~~~ 554 (1915)
++.+++.|+.+ ..+.+||..+..-... +......-.++. -++.+++.|+.++ .+.+||+.+..-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 57777777754 3588999887754332 211111112222 2567777777553 57788887654322
Q ss_pred E--eecCCCCeEEEEeccCccCCCcEEEEEeCC-------CeEEEEecccCccccceeccCccccccccCCCCCceEEEE
Q psy9598 555 V--LVGHQGIITGVNFCPLEVNGFNYLASTSTD-------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 625 (1915)
Q Consensus 555 ~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D-------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 625 (1915)
. +........++.+ ++.+++.|+.+ ..+.+||+.+..-.... ..+. + .....++.
T Consensus 139 ~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~-------~-r~~~~~~~ 202 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV------GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA--EMST-------R-RSGAGVGV 202 (302)
T ss_dssp ECCCSSCCBSCEEEEE------TTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC--CCSS-------C-CBSCEEEE
T ss_pred cCCCCCcccCceEEEE------CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC--CCcc-------c-cccccEEE
Confidence 2 1111111122222 23666666643 34778888765421111 1010 0 11112222
Q ss_pred ECCCCcEEEEEeCCC-----eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEEccCC
Q psy9598 626 FSPGGLFLATGSGDH-----HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYKCS 695 (1915)
Q Consensus 626 fspdg~~Lasgs~Dg-----~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG-----~I~IWDl~~~ 695 (1915)
+ ++.+++.|+.++ .+.+||+... ....+..+.........+. .++.+++.|+.++ .|.+||+.+.
T Consensus 203 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 203 L--NNLLYAVGGHDGPLVRKSVEVYDPTTN-AWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp E--TTEEEEECCBSSSSBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred E--CCEEEEECCCCCCcccceEEEEeCCCC-CEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 2 577788887643 6888887432 1222211111111111222 2667777877654 4899999999
Q ss_pred ceEEe
Q psy9598 696 QWRFI 700 (1915)
Q Consensus 696 ~~~~~ 700 (1915)
.|..+
T Consensus 278 ~W~~~ 282 (302)
T 2xn4_A 278 KWTVV 282 (302)
T ss_dssp EEEEC
T ss_pred eEEEC
Confidence 88763
No 404
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.18 E-value=0.82 Score=53.96 Aligned_cols=191 Identities=12% Similarity=0.079 Sum_probs=94.0
Q ss_pred CCCEEEEEEC----CCcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeC----C-----CcEEEEECCCCc
Q psy9598 487 LGEVIVTGAD----DLLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTV----D-----KTIRIWNLQTLA 551 (1915)
Q Consensus 487 dg~~LaTGs~----Dg~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~----D-----gtIrVWDl~tg~ 551 (1915)
++.+++.|+. -..+.+||..+...... +......- +++. -++.+++.|+. + ..+.+||+.+..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 3555566653 23688888877654332 11111111 1222 25667777665 2 468889987754
Q ss_pred eEEE--eecCCCCeEEEEeccCccCCCcEEEEEeCC-----CeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 552 PISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 552 ~~~~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D-----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
-... +........++.+ ++.+++.|+.+ ..+.+||+.+......... + .......++
T Consensus 102 W~~~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p--------~~r~~~~~~ 165 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI------DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--L--------TRRIGVGVA 165 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE------TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--S--------SCCBSCEEE
T ss_pred EeECCCCCcCccccEEEEE------CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--C--------ccccceEEE
Confidence 2221 1111111122222 23666776643 3577788776532111110 0 001111222
Q ss_pred EECCCCcEEEEEeCC-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEccC
Q psy9598 625 SFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYKC 694 (1915)
Q Consensus 625 ~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~~ 694 (1915)
.+ ++.+++.|+.+ ..+.+||+... ....+..+........++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 166 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 166 VL--NRLLYAVGGFDGTNRLNSAECYYPERN-EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp EE--TTEEEEECCBCSSCBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred EE--CCEEEEEeCCCCCCcCceEEEEeCCCC-eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC
Confidence 23 66777777764 35788887432 11111111111111222222 56677777765 4589999999
Q ss_pred CceEEe
Q psy9598 695 SQWRFI 700 (1915)
Q Consensus 695 ~~~~~~ 700 (1915)
..|..+
T Consensus 241 ~~W~~~ 246 (308)
T 1zgk_A 241 ETWTFV 246 (308)
T ss_dssp TEEEEC
T ss_pred CcEEEC
Confidence 988764
No 405
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.10 E-value=0.5 Score=55.82 Aligned_cols=191 Identities=11% Similarity=0.053 Sum_probs=97.2
Q ss_pred CCCEEEEEEC----C-----CcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCC
Q psy9598 487 LGEVIVTGAD----D-----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD-----KTIRIWNLQTL 550 (1915)
Q Consensus 487 dg~~LaTGs~----D-----g~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D-----gtIrVWDl~tg 550 (1915)
++.+++.|+. + ..+.+||+.+...... +........++.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5667777765 2 4688999887754332 1111111222222 66677777643 36888998775
Q ss_pred ceEEE--eecCCCCeEEEEeccCccCCCcEEEEEeCC-----CeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 551 APISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 551 ~~~~~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~D-----gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
.-... +........++.+ ++.+++.|+.+ ..+.+||+.+..-...... + .......+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p--------~~r~~~~~ 211 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL------NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM--N--------TIRSGAGV 211 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE------TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC--S--------SCCBSCEE
T ss_pred eEeECCCCCccccceEEEEE------CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC--C--------CccccceE
Confidence 43221 1111111122222 23677777654 3578888776532111100 0 00111222
Q ss_pred EEECCCCcEEEEEeCC-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEEcc
Q psy9598 624 SSFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYK 693 (1915)
Q Consensus 624 l~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D-----G~I~IWDl~ 693 (1915)
+.+ ++.+++.|+.+ ..+.+||+... ....+..+........++. -++.+++.|+.+ ..|.+||+.
T Consensus 212 ~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 212 CVL--HNCIYAAGGYDGQDQLNSVERYDVETE-TWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp EEE--TTEEEEECCBCSSSBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred EEE--CCEEEEEeCCCCCCccceEEEEeCCCC-cEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCC
Confidence 333 67777888765 45888887432 1111111111111112222 256677777754 457899999
Q ss_pred CCceEEe
Q psy9598 694 CSQWRFI 700 (1915)
Q Consensus 694 ~~~~~~~ 700 (1915)
+.+|..+
T Consensus 287 ~~~W~~~ 293 (308)
T 1zgk_A 287 TDTWSEV 293 (308)
T ss_dssp TTEEEEE
T ss_pred CCEEeec
Confidence 9888764
No 406
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.75 E-value=1.5 Score=51.69 Aligned_cols=188 Identities=8% Similarity=-0.008 Sum_probs=93.9
Q ss_pred EEEEEECCCcEEEEECCCCcEEE-EEeCCCCCEEEEEEeCCCCEEEEEeC----C-------CcEEEEECCCCceEEEee
Q psy9598 490 VIVTGADDLLIKLWRARDGKLLA-TLRGCSGEISDIAIDNRNILLAAGTV----D-------KTIRIWNLQTLAPISVLV 557 (1915)
Q Consensus 490 ~LaTGs~Dg~I~IWd~~tg~~~~-~l~gH~~~I~~Lafspdg~~LaSgs~----D-------gtIrVWDl~tg~~~~~l~ 557 (1915)
+++.|+ ..+.+||..+++-.. .+........+.+...++.+++.|+. + ..+.+||+.+..-.. +.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CC
Confidence 344454 479999998887543 22222223333344457788888873 1 127788887754321 11
Q ss_pred cCCCCe--EEEEeccCccCCCcEEEEEeCC--------CeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC
Q psy9598 558 GHQGII--TGVNFCPLEVNGFNYLASTSTD--------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 627 (1915)
Q Consensus 558 ~h~~~V--~sl~fsp~~~~d~~~L~sgs~D--------gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs 627 (1915)
.-...- .+++.. ++.+++.|+.+ ..+.+||+.+..-.... ..+. + .....++.
T Consensus 84 ~~p~~r~~~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~-------~-r~~~~~~~-- 146 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD--PLPY-------V-VYGHTVLS-- 146 (315)
T ss_dssp CBSSCEESCEEEEE-----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC--CCSS-------C-CBSCEEEE--
T ss_pred CCCcchhceeEEEE-----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC--CCCC-------c-ccceeEEE--
Confidence 111110 112221 23666777632 35778888765321111 1010 0 01111222
Q ss_pred CCCcEEEEEeC-C-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEEccCCc
Q psy9598 628 PGGLFLATGSG-D-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYKCSQ 696 (1915)
Q Consensus 628 pdg~~Lasgs~-D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG-----~I~IWDl~~~~ 696 (1915)
.++.+++.|+. + ..+.+||+... ....+..+........++.+ ++.+++.|+.++ .+.+||+.+..
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKF-EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCC-eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 35667777776 2 36888887432 11111111111111122222 667777777654 48889999998
Q ss_pred eEEe
Q psy9598 697 WRFI 700 (1915)
Q Consensus 697 ~~~~ 700 (1915)
|...
T Consensus 224 W~~~ 227 (315)
T 4asc_A 224 WAPF 227 (315)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8764
No 407
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.75 E-value=9.5 Score=47.94 Aligned_cols=273 Identities=11% Similarity=0.084 Sum_probs=150.5
Q ss_pred EEEEECCCcEEEEECCCCcEEEEEeCCC-------------------------CCE--EEEEEe---CCCCEEEEEe-CC
Q psy9598 491 IVTGADDLLIKLWRARDGKLLATLRGCS-------------------------GEI--SDIAID---NRNILLAAGT-VD 539 (1915)
Q Consensus 491 LaTGs~Dg~I~IWd~~tg~~~~~l~gH~-------------------------~~I--~~Lafs---pdg~~LaSgs-~D 539 (1915)
+.||+..|.|+|+-+.+++.+..+.-.+ +.. ..+++. .||++|+.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5688889999999999999888774211 111 123343 2688888876 45
Q ss_pred CcEEEEECCCCceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCC-------CeE---------EEE---ecccCccc
Q psy9598 540 KTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTD-------GCI---------GFW---KYKLDIDI 599 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~D-------gtI---------~iW---Dl~~~~~~ 599 (1915)
..|-..++...++-..+. .....+.++.|-... +..|+++++.. |.. .+| |..+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p--~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP--HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS--BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccC--CccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 678888999888766654 345677788775211 33677777643 221 000 11111000
Q ss_pred cceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC---------------eEEEEEecC--------C-CCCc-
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH---------------HVRVYKMDG--------V-DSPL- 654 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg---------------~I~IwDl~~--------~-~~~~- 654 (1915)
..+.. .+..-.+...++|.+.++.+.+. .|.++++.. . ....
T Consensus 231 ~Qv~v-------------~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 231 FQVIV-------------DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEE-------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEc-------------CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 00000 01222234455666666554321 355565520 0 0000
Q ss_pred -eeEEecc---------------CCCCeeEEEEcCCCCEEEEEe-CCCcEEEEEccCCceEEeeecccccCCCCcccccc
Q psy9598 655 -GILEVEE---------------HSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 717 (1915)
Q Consensus 655 -~i~~l~~---------------h~~~V~sl~fspdg~~L~sgs-~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1915)
.+..+.+ -......+.++|+|.++++++ .+.+|.++|+....-... ...+.........
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~----~k~~~~~~~~~ae 373 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFA----GKLADPRDVIVGE 373 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHT----TCCSCGGGGEEEC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhh----ccccCcccceEee
Confidence 0111211 123345678899999887665 678999999874321000 0000000111112
Q ss_pred ccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC----------ceEEEeeCCCCCeEEEE-----EccCCCCEEEE
Q psy9598 718 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG----------DLVQVLKGHTNEVFVLE-----SHPFDSRVLLS 782 (1915)
Q Consensus 718 ~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg----------~~i~~l~gH~~~V~sl~-----~sp~dg~~LaS 782 (1915)
..........+|+++| ..+++...|..|..|++... ..+..+..|-.+-.-.+ -.+ +|++|++
T Consensus 374 ~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~-dGk~lv~ 451 (638)
T 3sbq_A 374 PELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEA-DGKWLVA 451 (638)
T ss_dssp CBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC-CSCEEEE
T ss_pred ccCCCcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCC-CccEEEE
Confidence 2245567789999999 77777767999999998643 45666666655333222 134 7888888
Q ss_pred Ee
Q psy9598 783 AG 784 (1915)
Q Consensus 783 gs 784 (1915)
..
T Consensus 452 ln 453 (638)
T 3sbq_A 452 LS 453 (638)
T ss_dssp EE
T ss_pred ec
Confidence 75
No 408
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.67 E-value=1.3 Score=61.60 Aligned_cols=273 Identities=11% Similarity=0.092 Sum_probs=148.8
Q ss_pred CCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCC
Q psy9598 497 DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGF 576 (1915)
Q Consensus 497 Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~ 576 (1915)
...|.|.|+..+..+..-. -.--+.-.+|..+.||.-+ ..++.|+|+.+...+..+.-.. .|.-=.|...
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~----- 116 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL----- 116 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCC-----
Confidence 3478889988765442211 0111233467666666554 6789999999877776665433 4555566542
Q ss_pred cEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEe-------CCCeEEEEEecC
Q psy9598 577 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-------GDHHVRVYKMDG 649 (1915)
Q Consensus 577 ~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs-------~Dg~I~IwDl~~ 649 (1915)
+.|+..+. ..|..|++.+... ....|..... + ....|..-..+++.++++..| ..|.+.+|.+..
T Consensus 117 ~~l~lVT~-~aVyHW~~~~~s~-P~k~fdR~~~----L--~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 117 NTVALVTD-NAVYHWSMEGESQ-PVKMFDRHSS----L--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred CeeEEEcC-CeEEEeccCCCCc-cHHHHhcchh----c--ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 45555543 5699999965321 1111221111 1 136788888888888877543 358889998843
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCC---CCEEEEEe---CCCcEEEEEccCC-ceEEeeecccccCCCCccccccccccc
Q psy9598 650 VDSPLGILEVEEHSDKVDSIQWSHS---HLRFVSGS---RDGTALIWYYKCS-QWRFIRLDMNTCLPHTKETSDETNKKI 722 (1915)
Q Consensus 650 ~~~~~~i~~l~~h~~~V~sl~fspd---g~~L~sgs---~DG~I~IWDl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1915)
.. ...+.||.+....+.+..+ ...|+.+. ..|.++|-++... .-.. ..... .............
T Consensus 189 ~~----sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~---~f~kk--~~~~~~~~~~~~D 259 (1630)
T 1xi4_A 189 KV----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKK--AVDVFFPPEAQND 259 (1630)
T ss_pred cc----chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC---CCccc--cccccCCcccccC
Confidence 21 2335666655544433211 11222222 1267888777543 1000 00000 0000000011122
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCc
Q psy9598 723 KVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 798 (1915)
Q Consensus 723 ~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~ 798 (1915)
-..++..++....++..+. -|.|++||+.||.++..-+-....|+..+.+...+. ++.....|.|.--.+....
T Consensus 260 fpv~~~vs~k~g~iy~itk-~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g-~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred cceEEEeccccCEEEEEec-CceEEEEecccchhhhhccccCCceEEeccCCCCCc-eEEEcCCceEEEEEEccch
Confidence 2345666777777776666 899999999999998877666666666665542233 3344456666555554433
No 409
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.54 E-value=1.6 Score=60.63 Aligned_cols=270 Identities=8% Similarity=0.047 Sum_probs=143.1
Q ss_pred CcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCC
Q psy9598 540 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 619 (1915)
Q Consensus 540 gtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1915)
.+|.|.|+..+..+..-. -.--+.-.+|.. ..|+.-. ..++.|||+.+...+....+. .
T Consensus 48 ~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~----~iiALra-g~~lQiFnl~~k~klks~~~~-------------e 106 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPAS----KVIALKA-GKTLQIFNIEMKSKMKAHTMT-------------D 106 (1630)
T ss_pred ceEEEEECCCCCCccccc---ccchhhccCCCc----ceEEEec-CCeEEEeehHHhhhhcccccC-------------C
Confidence 468888887755432111 111233455633 4454443 789999999988776666665 2
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEecc--CCCCeeEEEEcCCCCEEEEEe-------CCCcEEEE
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE--HSDKVDSIQWSHSHLRFVSGS-------RDGTALIW 690 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~--h~~~V~sl~fspdg~~L~sgs-------~DG~I~IW 690 (1915)
.|.--.|-....+-+++ +..|..|++.+...+..++...+ ....|..-..+++..+++..| ..|.+.+|
T Consensus 107 ~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 107 DVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred CceEEEecCCCeeEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeee
Confidence 34444554443332222 34799999976555544443221 135566777788888776443 34778888
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC---ce------EEEee
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG---DL------VQVLK 761 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg---~~------i~~l~ 761 (1915)
....+....+.... .++... ..........+.|++.-. .. .+.++|.++... .. +..+.
T Consensus 185 S~er~~sQ~iegha-~~F~~~--~~~~~~~~~~l~~f~~~~--------~~-g~kLhi~Ei~~~~~~~~~f~kk~~~~~~ 252 (1630)
T 1xi4_A 185 SVDRKVSQPIEGHA-ASFAQF--KMEGNAEESTLFCFAVRG--------QA-GGKLHIIEVGTPPTGNQPFPKKAVDVFF 252 (1630)
T ss_pred ecccccchhhhHhH-hhhhee--ccCCCCCCceEEEEEEec--------CC-CceEEEEecCCCccCCCCCccccccccC
Confidence 77654321110000 000000 000001111222222211 01 357888887432 11 11111
Q ss_pred C---CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeE
Q psy9598 762 G---HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHL 838 (1915)
Q Consensus 762 g---H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I 838 (1915)
. -..--.++.+++ ...++...+.-|.|.++|+.++.+ +..-. .....|+..+-+....=+++....|.|
T Consensus 253 ~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~--i~~~r-----is~~~iF~~~~~~~~~g~~~vnr~G~v 324 (1630)
T 1xi4_A 253 PPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTC--IYMNR-----ISGETIFVTAPHEATAGIIGVNRKGQV 324 (1630)
T ss_pred CcccccCcceEEEecc-ccCEEEEEecCceEEEEecccchh--hhhcc-----ccCCceEEeccCCCCCceEEEcCCceE
Confidence 1 122334566777 667788888899999999999988 32211 223456655555443445555577888
Q ss_pred EEEeCCCCcccccC
Q psy9598 839 LVYGLGGFKRPQNI 852 (1915)
Q Consensus 839 ~Iwdl~s~~~~~~l 852 (1915)
.-..+.....+..+
T Consensus 325 l~v~v~~~~iv~yi 338 (1630)
T 1xi4_A 325 LSVCVEEENIIPYI 338 (1630)
T ss_pred EEEEEccchhhhhH
Confidence 88887766555444
No 410
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.3 Score=58.53 Aligned_cols=202 Identities=9% Similarity=-0.063 Sum_probs=105.3
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeCC-CCCEEEEEE--eC-CCCEEEEE-eCCCcEEEEECCCCceEEEeec----
Q psy9598 488 GEVIVTGADDLLIKLWRARDGKLLATLRGC-SGEISDIAI--DN-RNILLAAG-TVDKTIRIWNLQTLAPISVLVG---- 558 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH-~~~I~~Laf--sp-dg~~LaSg-s~DgtIrVWDl~tg~~~~~l~~---- 558 (1915)
+.+++.|+.||.|.-+|..+|+.+.++... ..++..+.- .+ ++..++.. +.||.|..++..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 347899999999999999999999998754 122222110 01 22333333 5899999999988855544331
Q ss_pred CCCCeEEEEeccCc-----cCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC-----C
Q psy9598 559 HQGIITGVNFCPLE-----VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS-----P 628 (1915)
Q Consensus 559 h~~~V~sl~fsp~~-----~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs-----p 628 (1915)
...++.. .-.|.- ...+..+++|+.+|.+...|+.+|+.+..+....+...... ....|.... -
T Consensus 90 ~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-----~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 90 STSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGS-----QSVDCSPEEKIKLQE 163 (339)
T ss_dssp TTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------------------
T ss_pred ecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccc-----ccccccccccccccc
Confidence 1122221 111100 00346889999999999999999987766654422110000 001111110 1
Q ss_pred CCcEEEEEeCCCeEEEEEecCCCCCc-eeEEeccCCCC--e-eEEEEcCCCCEEEEEeCCCcEEEEEccCCce
Q psy9598 629 GGLFLATGSGDHHVRVYKMDGVDSPL-GILEVEEHSDK--V-DSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 697 (1915)
Q Consensus 629 dg~~Lasgs~Dg~I~IwDl~~~~~~~-~i~~l~~h~~~--V-~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~ 697 (1915)
.+..|+.|..+..|.+.+- +..... .......+... + .+..++.++.+ +.++.||.|.-+|..++..
T Consensus 164 ~~~~v~ig~~~y~v~~~~~-sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHSY-DGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp -CCEEEEEEEEEECEECCT-TSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred CCCeEEEecceEEEEEECC-CCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 2345666666666655542 111000 01111111000 0 00001123555 5578899999988887763
No 411
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.34 E-value=1.6 Score=48.44 Aligned_cols=157 Identities=10% Similarity=-0.072 Sum_probs=83.4
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy9598 664 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 743 (1915)
Q Consensus 664 ~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D 743 (1915)
..+..|+|+|+|.+.++ .+|.+.-.+..+....... .........+- ....++.|+++|.+.++ . |
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~--------~s~t~IG~~Gw-~~F~a~~fD~~G~LYav--~-d 106 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWM--------GRAKKIGNGGW-NQFQFLFFDPNGYLYAV--S-K 106 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH--------HHCEEEECSCG-GGCSEEEECTTSCEEEE--E-T
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccc--------ccccEeccccc-ccceEEEECCCCCEEEe--C-C
Confidence 46789999999986666 6676544433221100000 00000000011 11478999999988777 4 8
Q ss_pred CeEEEEECCCCce-------EEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccccceeeeeeecCCCCcc
Q psy9598 744 FQIKIWDAFNGDL-------VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGA 816 (1915)
Q Consensus 744 g~I~vwD~~tg~~-------i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~ 816 (1915)
|.|+-++-.+... ...-.+--..+..|.|.| ++.+.+.. ||.++-+..-++....-......+-..+-..
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~ 183 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDT 183 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGG
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcce
Confidence 9998887643211 111122234689999999 88766665 8886544333222100000011111122234
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEE
Q psy9598 817 LFDGKWSPDGTTCALTDSYGHLL 839 (1915)
Q Consensus 817 V~~vafSpdg~~Lasg~~dG~I~ 839 (1915)
...+.|.++|.++++. +|.|+
T Consensus 184 yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 184 FKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEEEECTTSCEEEEE--TTEEE
T ss_pred EEEEEECCCCcEEEEe--CCeEE
Confidence 4456788888888777 66543
No 412
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.19 E-value=1.3 Score=52.44 Aligned_cols=195 Identities=9% Similarity=0.007 Sum_probs=96.6
Q ss_pred EEcCCCCEEEEEEC-----C------CcEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC--------Cc
Q psy9598 483 LFDKLGEVIVTGAD-----D------LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD--------KT 541 (1915)
Q Consensus 483 afspdg~~LaTGs~-----D------g~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D--------gt 541 (1915)
+...++.+++.|+. . ..+.+||+.+..-... +......- +++. -++.+++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGE-ALNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEE-ETTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEE-ECCEEEEEeCCcCCCCCcccce
Confidence 33457788888883 1 1277889887754321 11111111 1122 256677777632 45
Q ss_pred EEEEECCCCceEE--EeecCCCCeEEEEeccCccCCCcEEEEEeC-C-----CeEEEEecccCccccceeccCccccccc
Q psy9598 542 IRIWNLQTLAPIS--VLVGHQGIITGVNFCPLEVNGFNYLASTST-D-----GCIGFWKYKLDIDISKTVFHEPVMFNER 613 (1915)
Q Consensus 542 IrVWDl~tg~~~~--~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~-D-----gtI~iWDl~~~~~~~~~~~~~~~~~~~~ 613 (1915)
+.+||+.+..-.. .+........++.+ ++.+++.|+. + ..+.+||+.+..-.... ..+.
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~----- 185 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGHTVLSH------MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA--PMQT----- 185 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEE------TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC--CCSS-----
T ss_pred EEEECCCCCcEeECCCCCCcccceeEEEE------CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC--CCCC-----
Confidence 8899988754221 11111111122222 2367777775 2 36788888765321111 1000
Q ss_pred cCCCCCceEEEEECCCCcEEEEEeCCC-----eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC---
Q psy9598 614 IRPGNAHILCSSFSPGGLFLATGSGDH-----HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG--- 685 (1915)
Q Consensus 614 ~~~~~~~V~~l~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG--- 685 (1915)
......++.+ ++.+++.|+.++ .+.+||+... ....+..+........++.+ ++.+++.|+.++
T Consensus 186 ---~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~ 257 (315)
T 4asc_A 186 ---ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN-KWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLET 257 (315)
T ss_dssp ---CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEEC
T ss_pred ---chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC-eEEECCCCCCcccceeEEEE--CCEEEEECCccccCc
Confidence 0111122222 667788887654 4778887432 22222111111111122222 566777777642
Q ss_pred -----------cEEEEEccCCceEEe
Q psy9598 686 -----------TALIWYYKCSQWRFI 700 (1915)
Q Consensus 686 -----------~I~IWDl~~~~~~~~ 700 (1915)
.|.+||+.+.+|..+
T Consensus 258 ~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 258 ESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp TTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CCccccccccCcEEEecCCCChhhhh
Confidence 377889999888765
No 413
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.81 E-value=2.1 Score=52.22 Aligned_cols=159 Identities=12% Similarity=0.101 Sum_probs=95.3
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceEEEeecC----CCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccc
Q psy9598 526 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGH----QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 601 (1915)
Q Consensus 526 fspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h----~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~ 601 (1915)
.+.+|+-|+.+- ++.||.-++......+.+... -..|..+..+|.+ .+|+..+. ..|.|..+..+.....
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG----~lLAl~g~-~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG----DLLCLFND-NEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS----SEEEEECS-SEEEEEECCTTCSCCC
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC----CEEEEecC-CeEEEEEecCccccCc
Confidence 345566666554 467887777754444454432 2367889999954 77777654 5788888774321111
Q ss_pred e-e----cc-CccccccccCCCCCceEEEEECCC---CcEEEEEeCCCeEEEEEecCCC-CCc------eeEEeccCCCC
Q psy9598 602 T-V----FH-EPVMFNERIRPGNAHILCSSFSPG---GLFLATGSGDHHVRVYKMDGVD-SPL------GILEVEEHSDK 665 (1915)
Q Consensus 602 ~-~----~~-~~~~~~~~~~~~~~~V~~l~fspd---g~~Lasgs~Dg~I~IwDl~~~~-~~~------~i~~l~~h~~~ 665 (1915)
- . +. ...............|..+.|+|- |..|++-..|+.|++||+.... .+. ..+.+..+...
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVND 181 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccce
Confidence 0 0 00 000000001112478999999995 4589999999999999996421 122 11122233467
Q ss_pred eeEEEEcCCCCEEEEEe--CCCcEEEE
Q psy9598 666 VDSIQWSHSHLRFVSGS--RDGTALIW 690 (1915)
Q Consensus 666 V~sl~fspdg~~L~sgs--~DG~I~IW 690 (1915)
|.+++|..+|-.|+..+ ..|.|+-.
T Consensus 182 v~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 182 ITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 89999999888777755 77776543
No 414
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.57 E-value=2.3 Score=50.33 Aligned_cols=107 Identities=14% Similarity=0.251 Sum_probs=57.4
Q ss_pred CCCEEEEEeCC-------CcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEec----
Q psy9598 674 SHLRFVSGSRD-------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---- 742 (1915)
Q Consensus 674 dg~~L~sgs~D-------G~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~---- 742 (1915)
++.+++.|+.+ ..+.+||+.+..|..... .+. ....| .++. .++..++.|+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-----~p~-----~r~~~----~~~~--~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-----LPI-----KVYGH----NVIS--HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-----CSS-----CEESC----EEEE--ETTEEEEECCEESSSC
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-----CCC-----ccccc----EEEE--ECCEEEEEcCCCCCCC
Confidence 56677777754 347888999988876421 110 01111 1222 355555555531
Q ss_pred -CCeEEEEECCCCceEEE--eeCCCCCeEEEEEccCCCCEEEEEecC-----ceEEEEECCCCcc
Q psy9598 743 -NFQIKIWDAFNGDLVQV--LKGHTNEVFVLESHPFDSRVLLSAGHD-----GLIIIWDILSSKQ 799 (1915)
Q Consensus 743 -Dg~I~vwD~~tg~~i~~--l~gH~~~V~sl~~sp~dg~~LaSgs~D-----G~I~IWdl~s~~~ 799 (1915)
-..+.+||+.+..-... +........++ .. ++.+++.||.+ ..|.+||+.+..-
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA-IH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceEE-EE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 23589999887653332 11111111222 22 56788888754 3577888876543
No 415
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.86 E-value=25 Score=43.90 Aligned_cols=121 Identities=11% Similarity=0.081 Sum_probs=62.3
Q ss_pred CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccc-cCCCCCceEEEEECCC----CcEEEE
Q psy9598 561 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER-IRPGNAHILCSSFSPG----GLFLAT 635 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~fspd----g~~Las 635 (1915)
...+.|+|.|++ ...|+++...|.|++++...... .......+..+... .......+..|+|+|+ +.+.++
T Consensus 14 ~~P~~~a~~pdG---~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 14 RQPVGALHSGDG---SQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SSEEEEECCSSS---SCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEECCCC---CeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 456899999943 12456667789999997543211 11111111111110 0122456889999996 444443
Q ss_pred EeC--C----------CeEEEEEecCC--C-----CCceeEEec--cCCCCeeEEEEcCCCCEEEEEeCCC
Q psy9598 636 GSG--D----------HHVRVYKMDGV--D-----SPLGILEVE--EHSDKVDSIQWSHSHLRFVSGSRDG 685 (1915)
Q Consensus 636 gs~--D----------g~I~IwDl~~~--~-----~~~~i~~l~--~h~~~V~sl~fspdg~~L~sgs~DG 685 (1915)
-+. + ..|.-|.+... . ....+..+. ........|+|.|+|.++++.+..+
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 322 1 13444555321 1 122333332 2233468899999998777666544
No 416
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.66 E-value=1.8 Score=52.07 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=33.5
Q ss_pred CCCEEEEEECC-CcEEEEECCC--CcEE--EEEe-CCCCCEEEEEEeCCCCEEEEEeC-C---------CcEEEEECCCC
Q psy9598 487 LGEVIVTGADD-LLIKLWRARD--GKLL--ATLR-GCSGEISDIAIDNRNILLAAGTV-D---------KTIRIWNLQTL 550 (1915)
Q Consensus 487 dg~~LaTGs~D-g~I~IWd~~t--g~~~--~~l~-gH~~~I~~Lafspdg~~LaSgs~-D---------gtIrVWDl~tg 550 (1915)
++.+++.|+.+ ..+.+||+.+ .... ..+. .....-.++. -++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 46666666543 4688888864 3222 1222 1111112222 25667777765 2 46888998875
Q ss_pred c
Q psy9598 551 A 551 (1915)
Q Consensus 551 ~ 551 (1915)
.
T Consensus 97 ~ 97 (357)
T 2uvk_A 97 S 97 (357)
T ss_dssp E
T ss_pred c
Confidence 4
No 417
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.35 E-value=2.7 Score=55.87 Aligned_cols=202 Identities=13% Similarity=0.043 Sum_probs=104.1
Q ss_pred CCCCEEEEEECC----CcEEEEECCCCcEEEEE-e-----CCCC-CEEEEEEeC-CCCEEEEEeCC------CcEEEEEC
Q psy9598 486 KLGEVIVTGADD----LLIKLWRARDGKLLATL-R-----GCSG-EISDIAIDN-RNILLAAGTVD------KTIRIWNL 547 (1915)
Q Consensus 486 pdg~~LaTGs~D----g~I~IWd~~tg~~~~~l-~-----gH~~-~I~~Lafsp-dg~~LaSgs~D------gtIrVWDl 547 (1915)
-++.+++.||.+ ..+.+||+.++.....- . .... .-.+++... ++.+++.||.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777753 46889998887644332 1 0111 112333333 77788888754 35788888
Q ss_pred CCCceEE--EeecCCCCeEEEEeccCccCCCcEEEEEeCCC--eEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 548 QTLAPIS--VLVGHQGIITGVNFCPLEVNGFNYLASTSTDG--CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 548 ~tg~~~~--~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg--tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
.+..-.. .+......-.++.+. ++.+++.|+.++ .+.+||..+.......... ..... .....+
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~-----~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g---~~p~~----r~~~~a 543 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLP-----DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD---EFFQN----SLVSAG 543 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECT-----TSCEEEECCBCSSCSEEEEETTTTEEEECCCSS---GGGGS----CCBSCE
T ss_pred CCCcEEECCCCCCCcccceEEEEc-----CCEEEEECCCCCCCCEEEEECCCCceEEccCCC---CCCCc----ccceeE
Confidence 7743221 111111111222222 347778887655 6888888776421111100 00000 111233
Q ss_pred EEECCC-CcEEEEEeC--C-----CeEEEEEecCCCC-----CceeEEeccCCCCeeEEEEcCCCCEEEEEeCC------
Q psy9598 624 SSFSPG-GLFLATGSG--D-----HHVRVYKMDGVDS-----PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD------ 684 (1915)
Q Consensus 624 l~fspd-g~~Lasgs~--D-----g~I~IwDl~~~~~-----~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D------ 684 (1915)
+.+..+ +.+++.||. + ..+.+||+....- ...+.........-.+++...++.+++.|+.+
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCC
Confidence 444544 667777776 2 3588999854331 12222211111111223333336777777743
Q ss_pred --CcEEEEEccCCceEE
Q psy9598 685 --GTALIWYYKCSQWRF 699 (1915)
Q Consensus 685 --G~I~IWDl~~~~~~~ 699 (1915)
..|.+||+.+..|..
T Consensus 624 ~~~~v~~yd~~t~~W~~ 640 (695)
T 2zwa_A 624 RTNSIISLDPLSETLTS 640 (695)
T ss_dssp TTTSEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCeEEE
Confidence 458999999999873
No 418
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=92.17 E-value=3.6 Score=48.54 Aligned_cols=194 Identities=8% Similarity=-0.005 Sum_probs=94.8
Q ss_pred EcCCCCEEEEEEC----CC-------cEEEEECCCCcEEEE--EeCCCCCEEEEEEeCCCCEEEEEeCC-------CcEE
Q psy9598 484 FDKLGEVIVTGAD----DL-------LIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD-------KTIR 543 (1915)
Q Consensus 484 fspdg~~LaTGs~----Dg-------~I~IWd~~tg~~~~~--l~gH~~~I~~Lafspdg~~LaSgs~D-------gtIr 543 (1915)
...++.+++.|+. ++ .+.+||..+..-... +.........+.+ ++.+++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 3456788888873 12 177888877654332 1111111112222 56677777754 2477
Q ss_pred EEECCCCceEEE--eecCCCCeEEEEeccCccCCCcEEEEEeC------CCeEEEEecccCccccceeccCccccccccC
Q psy9598 544 IWNLQTLAPISV--LVGHQGIITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVMFNERIR 615 (1915)
Q Consensus 544 VWDl~tg~~~~~--l~~h~~~V~sl~fsp~~~~d~~~L~sgs~------DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~ 615 (1915)
+||+.+..-... +........++. . ++.+++.|+. -..+.+||+.+..-.... ..+.
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~-~-----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~------- 195 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVIS-H-----NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA--PMKT------- 195 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEE-E-----TTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC--CCSS-------
T ss_pred EEeCCCCCEeECCCCCCcccccEEEE-E-----CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC--CCCC-------
Confidence 888876543221 111001111222 1 3366666664 235888888766421111 1010
Q ss_pred CCCCceEEEEECCCCcEEEEEeCC-----CeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCC------
Q psy9598 616 PGNAHILCSSFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD------ 684 (1915)
Q Consensus 616 ~~~~~V~~l~fspdg~~Lasgs~D-----g~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~D------ 684 (1915)
+ .....++.+ ++.+++.|+.+ ..+.+||+... ....+..+.........+. .++.+++.|+.+
T Consensus 196 ~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~ 269 (318)
T 2woz_A 196 P-RSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN-KWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLES 269 (318)
T ss_dssp C-CBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC-CEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC---
T ss_pred C-cccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC-eEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCC
Confidence 0 111122222 56777777653 34667887432 2222222211111112222 256677777654
Q ss_pred --------CcEEEEEccCCceEEe
Q psy9598 685 --------GTALIWYYKCSQWRFI 700 (1915)
Q Consensus 685 --------G~I~IWDl~~~~~~~~ 700 (1915)
..+.+||+.+.+|..+
T Consensus 270 ~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 270 KEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp -CCBCCBCCCEEEEETTTTEEEEE
T ss_pred ceeccceeeeEEEEeCCCCEehhh
Confidence 3578899999988765
No 419
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.02 E-value=0.69 Score=51.40 Aligned_cols=109 Identities=11% Similarity=-0.032 Sum_probs=67.5
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCCCce------EEEee--CCCCCeEEEEEccCCCCEEEEEecCceEEEEEC
Q psy9598 723 KVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL------VQVLK--GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 794 (1915)
Q Consensus 723 ~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~------i~~l~--gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl 794 (1915)
.+..++|+|+|.+.++ . +|.++-.+..++.. -..+- +-.. -.++.|.| ++.+.++ .||.|+-|+-
T Consensus 42 ~~~~laf~P~G~LYaV--~-~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--L-NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--E-TTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred cceeEEECCCccEEEE--e-CCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence 5668999998886555 5 78888877655221 11110 1111 36788888 8887776 6799988876
Q ss_pred CCCccc-cceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy9598 795 LSSKQR-GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVY 841 (1915)
Q Consensus 795 ~s~~~~-~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iw 841 (1915)
.+.... .+.. ...+-..+-..+..|.|.|+|.+.|+. +|.++-+
T Consensus 115 P~~~~~~Wl~~-a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 115 PQSDTDNWIAR-ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp CCSTTCCHHHH-SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred CcCCCCceecc-ccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence 443221 0111 111222233578999999999999888 6776443
No 420
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.28 E-value=4.1 Score=48.90 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=27.5
Q ss_pred eEEEEECCCCc--eEEEeeCCCCCeEEEEEccCCCCEEEEEecCc------eEEEEECCCCcc
Q psy9598 745 QIKIWDAFNGD--LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG------LIIIWDILSSKQ 799 (1915)
Q Consensus 745 ~I~vwD~~tg~--~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG------~I~IWdl~s~~~ 799 (1915)
.+.+||+.+.+ .+..+........++.+ ++.+++.||.++ .|.++++.+++.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 57789987654 33333322222222322 578888888653 355568877766
No 421
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.88 E-value=34 Score=41.37 Aligned_cols=238 Identities=11% Similarity=-0.005 Sum_probs=104.6
Q ss_pred CEEEEEeCCCcEEEEECC-CCceEEEe--ecCCCCeEEEEeccCccCCCcEEEEEeCCC----eEEEEecccCcccccee
Q psy9598 531 ILLAAGTVDKTIRIWNLQ-TLAPISVL--VGHQGIITGVNFCPLEVNGFNYLASTSTDG----CIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~-tg~~~~~l--~~h~~~V~sl~fsp~~~~d~~~L~sgs~Dg----tI~iWDl~~~~~~~~~~ 603 (1915)
..|.+|+..| +.+++.. .+.....+ ......|.+|++.|.. ...|++++..| .|... ...+.......
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~---~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~ 97 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPRE---PERMLMAARTGHLGPTVFRS-DDGGGNWTEAT 97 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSS---TTCEEEEEEC--CCEEEEEE-SSTTSCCEECS
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCC---CCeEEEEecCCCCCccEEEe-CCCCCCceECC
Confidence 3566677766 4444432 22222221 1224568999998832 24455555544 33332 12222111111
Q ss_pred ccCccccccccCC----CCCceEEEEECCC--CcEEEEEeCCCeEEEEEecCCCCCceeEEec----------------c
Q psy9598 604 FHEPVMFNERIRP----GNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVE----------------E 661 (1915)
Q Consensus 604 ~~~~~~~~~~~~~----~~~~V~~l~fspd--g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~----------------~ 661 (1915)
. +..+...... ....|.++++.|. ...|.+++..+.|...+- ...+...+..+. .
T Consensus 98 ~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~ 174 (394)
T 3b7f_A 98 R--PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTP 174 (394)
T ss_dssp B--CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----C
T ss_pred c--cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCC
Confidence 0 0000000000 1235788999872 455666665555544321 222222221111 1
Q ss_pred CCCCeeEEEEcCC-CCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCC-CCEEEEE
Q psy9598 662 HSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS-DRWVITA 739 (1915)
Q Consensus 662 h~~~V~sl~fspd-g~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spd-g~~L~t~ 739 (1915)
....|.+|.++|. ...|+.+..++.|...+-....|.......... ............+.+|++++. ...|+++
T Consensus 175 ~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~----~~p~~~~~~g~~~~~i~~~~~~~~~l~vg 250 (394)
T 3b7f_A 175 DGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAAN----FLPDPNVEFGHDPHCVVQHPAAPDILYQQ 250 (394)
T ss_dssp CCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCT----TSSSSSSSSCBCEEEEEECSSSTTEEEEE
T ss_pred CCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCcccc----ccCCCccccCcceeEEEECCCCCCEEEEE
Confidence 1235789999874 345555555554444332233343321100000 000000001235888999986 3566665
Q ss_pred EecCCeEEEEECCCCceEEEeeC--CC---CCeEEEEEccCCCCEEEEE
Q psy9598 740 INFNFQIKIWDAFNGDLVQVLKG--HT---NEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 740 s~~Dg~I~vwD~~tg~~i~~l~g--H~---~~V~sl~~sp~dg~~LaSg 783 (1915)
.. +.|...+- .+.....+.. .. ..+.+|+++|.+...|..+
T Consensus 251 ~~--~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 251 NH--CGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp ET--TEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred cC--CeEEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 53 44555442 2333333221 11 3467888887444444444
No 422
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=90.62 E-value=37 Score=41.24 Aligned_cols=254 Identities=14% Similarity=0.099 Sum_probs=125.3
Q ss_pred cEEEEEeCCCeEEEEecccCccccceec---cCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCC--
Q psy9598 577 NYLASTSTDGCIGFWKYKLDIDISKTVF---HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD-- 651 (1915)
Q Consensus 577 ~~L~sgs~DgtI~iWDl~~~~~~~~~~~---~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~-- 651 (1915)
...+.-..||.|..|-......+..-.. ..|.. ... .....+..++++....+.++-..+|.|..|-.....
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~-v~~--~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqL 139 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTL-LES--IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 139 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEE-CGG--GTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTT
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEE-ccc--ccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcC
Confidence 4566667889999996544322111000 00100 000 112345566777777788888889999999653111
Q ss_pred -----CCc-eeEEeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC-CceEEeeecccccCCCCcccccccccccc
Q psy9598 652 -----SPL-GILEVEEH-SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 652 -----~~~-~i~~l~~h-~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
... ....+... ...|..|+.. ..+.++-..+|.|..|-... +++- .........+..........
T Consensus 140 G~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG-----~~~~~~~~~p~~v~~~~~~~ 212 (389)
T 3kci_A 140 GHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLG-----HSDSEDQLKPKLVEALQGHR 212 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTC-----SSSCCCEEEEEECGGGTTSC
T ss_pred CCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcC-----CCCCcccccceEecccCCCe
Confidence 000 01111111 1246666543 44666667899999995432 1100 00000000000001112335
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECCC-Cc---------eE-EEeeC-CCCCeEEEEEccCCCCEEEEEecCceEEE
Q psy9598 724 VTMVAWDASDRWVITAINFNFQIKIWDAFN-GD---------LV-QVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLIII 791 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~~Dg~I~vwD~~t-g~---------~i-~~l~g-H~~~V~sl~~sp~dg~~LaSgs~DG~I~I 791 (1915)
|..++......+.++-.. +|.|+.|-... ++ .. ..+.. ....|..|+... .+.+.-..||.|+.
T Consensus 213 v~~ia~G~g~~~t~~l~~-~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~---~hs~alt~~G~v~~ 288 (389)
T 3kci_A 213 VVDIACGSGDAQTLCLTD-DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS---QFSVALTKSGAVYT 288 (389)
T ss_dssp EEEEEECCSSCEEEEEET-TTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET---TEEEEEETTSCEEE
T ss_pred EEEEEEcCCCcEEEEEcc-CCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC---CEEEEEeCCCeEEE
Confidence 666666543345555555 89999997542 11 11 11111 122466666543 45555678999999
Q ss_pred EECCCCcccc-----ceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 792 WDILSSKQRG-----YKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 792 Wdl~s~~~~~-----~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
|-....-..+ .......+.......|..++. -..+.++.+.+|.|+.|.....
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCTT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCCC
Confidence 9764321100 111111122112234555544 3455666788999999998754
No 423
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=89.51 E-value=0.3 Score=46.45 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=35.6
Q ss_pred CCCCCCCCCCHHHHHhhhHHHHhhcccccHHHHHHHHHHhccC
Q psy9598 278 DFNPAGETKTKAEKFLMSAMETERLTRLDQELMLLIIKYLEKG 320 (1915)
Q Consensus 278 ~~~~~~~~~t~~ek~~ls~~~~~~i~~l~~e~~~li~~~L~~~ 320 (1915)
...+..+.||++||+.|+. .|..||++.+..|++||+..
T Consensus 10 ~~e~~~~~mT~eEK~~Ls~----~I~~Lp~e~L~~Vi~II~~~ 48 (90)
T 2jns_A 10 EEEDKCKPMSYEEKRQLSL----DINKLPGEKLGRVVHIIQSR 48 (90)
T ss_dssp TTTSSCCCCCHHHHHHHHH----HHTTSCHHHHTTHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHH----HHHHcCHHHHHHHHHHHHhc
Confidence 3446789999999999999 99999999999999999987
No 424
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.25 E-value=9.8 Score=45.42 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=63.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEeecC-CCCeEEEEeccCccCCCcEEEEE-eCCCeEEEEecccCccccceeccCcc
Q psy9598 531 ILLAAGTVDKTIRIWNLQTLAPISVLVGH-QGIITGVNFCPLEVNGFNYLAST-STDGCIGFWKYKLDIDISKTVFHEPV 608 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~tg~~~~~l~~h-~~~V~sl~fsp~~~~d~~~L~sg-s~DgtI~iWDl~~~~~~~~~~~~~~~ 608 (1915)
.+++.++.||.|.-+|..+|+.+..+... ..++....- +....++..++.. +.||.|..++..++............
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~-~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQE-PSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCC-SCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecC-CccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 37888999999999999999999988754 122222111 1111122344443 68999999998877433222211000
Q ss_pred ccccccCCCCCceEE---EEE-----CCCCcEEEEEeCCCeEEEEEec
Q psy9598 609 MFNERIRPGNAHILC---SSF-----SPGGLFLATGSGDHHVRVYKMD 648 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~---l~f-----spdg~~Lasgs~Dg~I~IwDl~ 648 (1915)
...++.. ..+ +..+..+++|+.+|.+...|+.
T Consensus 90 --------~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~ 129 (339)
T 2be1_A 90 --------STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML 129 (339)
T ss_dssp --------TTCSEEEECC----------CCEEEEECEEEEEEEEEETT
T ss_pred --------eccccccCCCceeecccccccCCEEEEEecCCEEEEEECC
Confidence 0111111 000 0134578899999999988884
No 425
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.47 E-value=15 Score=46.13 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=52.9
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCC------Cce-------EEEeeCCCCCeEEEEEccCCCCEEEEEecCceE
Q psy9598 723 KVTMVAWDASDRWVITAINFNFQIKIWDAFN------GDL-------VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLI 789 (1915)
Q Consensus 723 ~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t------g~~-------i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I 789 (1915)
....+.++|||+++++++-.+.++.|+|+.. +++ +..... .-.....+|.+ +|....|.--|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECC-CCceEeeeeecceE
Confidence 3456889999999999998899999999873 111 222322 23456788998 78666666689999
Q ss_pred EEEECCC
Q psy9598 790 IIWDILS 796 (1915)
Q Consensus 790 ~IWdl~s 796 (1915)
..|++..
T Consensus 402 vkWni~~ 408 (638)
T 3sbq_A 402 VKWNMEE 408 (638)
T ss_dssp EEEEHHH
T ss_pred EEEeccH
Confidence 9999965
No 426
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.21 E-value=8.6 Score=50.94 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=82.1
Q ss_pred CCCcEEEEEeCC----CeEEEEEecCCCCCceeE-E-----eccCCCCeeEEEEcC-CCCEEEEEeCCC------cEEEE
Q psy9598 628 PGGLFLATGSGD----HHVRVYKMDGVDSPLGIL-E-----VEEHSDKVDSIQWSH-SHLRFVSGSRDG------TALIW 690 (1915)
Q Consensus 628 pdg~~Lasgs~D----g~I~IwDl~~~~~~~~i~-~-----l~~h~~~V~sl~fsp-dg~~L~sgs~DG------~I~IW 690 (1915)
.++.+++.||.+ ..+.+||... .....+. . +..... -.+++... ++..++.|+.++ .+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~-~~W~~~~~~~p~~~~p~~R~-~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHY-DKIDMKNIEVSSSEVPVARM-CHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECS-SCEEEEECCCCCSCCCCCCB-SCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCC-CeEEEeccCCCCCCCCcccc-ceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 456677777753 3578888843 2222222 1 111111 12333333 677777777543 47889
Q ss_pred EccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEee-----CC
Q psy9598 691 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLK-----GH 763 (1915)
Q Consensus 691 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~~i~~l~-----gH 763 (1915)
|+.+..|..... .+ . .... .+++.-.++..++.|+. ++ .+.+||..+..-...-. ..
T Consensus 474 d~~t~~W~~~~~-----~p-----~----~R~~-h~~~~~~~~~iyv~GG~-~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 537 (695)
T 2zwa_A 474 DMKTREWSMIKS-----LS-----H----TRFR-HSACSLPDGNVLILGGV-TEGPAMLLYNVTEEIFKDVTPKDEFFQN 537 (695)
T ss_dssp ETTTTEEEECCC-----CS-----B----CCBS-CEEEECTTSCEEEECCB-CSSCSEEEEETTTTEEEECCCSSGGGGS
T ss_pred eCCCCcEEECCC-----CC-----C----Cccc-ceEEEEcCCEEEEECCC-CCCCCEEEEECCCCceEEccCCCCCCCc
Confidence 999988876421 00 0 0111 12223236777777765 33 69999998765433211 11
Q ss_pred CCCeEEEEEccCCCCEEEEEec--C-----ceEEEEECCCCc
Q psy9598 764 TNEVFVLESHPFDSRVLLSAGH--D-----GLIIIWDILSSK 798 (1915)
Q Consensus 764 ~~~V~sl~~sp~dg~~LaSgs~--D-----G~I~IWdl~s~~ 798 (1915)
.....++.+...++.+++.||. + ..|.+||+.+..
T Consensus 538 r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 538 SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1122334455423678888876 2 358889988766
No 427
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=86.24 E-value=66 Score=38.83 Aligned_cols=172 Identities=9% Similarity=0.075 Sum_probs=101.2
Q ss_pred CCCcEEEEEEcCCCCEEEE--EEC-------------CCcEEEEECCCC--cEEEEEeCC------CCCEEEEEEe---C
Q psy9598 475 HLSAVFCVLFDKLGEVIVT--GAD-------------DLLIKLWRARDG--KLLATLRGC------SGEISDIAID---N 528 (1915)
Q Consensus 475 H~~~V~~vafspdg~~LaT--Gs~-------------Dg~I~IWd~~tg--~~~~~l~gH------~~~I~~Lafs---p 528 (1915)
+--+|..+..+++|++-+. |.- --.|.+||+.++ ++++++.-. .+.+..|++. +
T Consensus 85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP 164 (381)
T ss_dssp SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence 4567888888877765442 211 125889999999 999887532 3458888888 2
Q ss_pred C----CCEEEEE-eCCCcEEEEECCCCceEEEeec--------------C----CCCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 529 R----NILLAAG-TVDKTIRIWNLQTLAPISVLVG--------------H----QGIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 529 d----g~~LaSg-s~DgtIrVWDl~tg~~~~~l~~--------------h----~~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
. +.++..+ +..+-|.|+|+.+++....+.. . ...|..|+.+|...++++.|+.+...
T Consensus 165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls 244 (381)
T 3q6k_A 165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS 244 (381)
T ss_dssp TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence 2 3344443 3467899999998876655521 0 13678888888643335666666655
Q ss_pred CeEEEEecccCccccceeccCccccccccCCCCCceEEEEEC-CCCcEEEEEeCCCeEEEEEecC
Q psy9598 586 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS-PGGLFLATGSGDHHVRVYKMDG 649 (1915)
Q Consensus 586 gtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fs-pdg~~Lasgs~Dg~I~IwDl~~ 649 (1915)
+ -++|.+.+...... ........... .+.......+++. .+|.++++--....|..|+..+
T Consensus 245 s-~~ly~V~T~~L~~~-~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 245 A-IKVYSVNTKELKQK-GGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp C-SEEEEEEHHHHSST-TCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred C-CcEEEEEHHHhhCc-chhhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 4 24444433211000 00111111111 1112344556775 6787777777888999999843
No 428
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.68 E-value=37 Score=39.22 Aligned_cols=225 Identities=13% Similarity=0.069 Sum_probs=114.4
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccc
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI 599 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~ 599 (1915)
.|..|+.... +.+.-. ||.|..|-......+..-......|..|+... ...++. . ||.|..|-......+
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~-----~hs~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN-----YHSLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS-----SEEEEE-E-TTEEEEEECCTTSTT
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC-----CEEEEE-E-CCEEEEeeCCCCCCC
Confidence 5667766543 222235 89999997654222211111223566776654 244454 4 899999976543322
Q ss_pred cceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEE
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV 679 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~ 679 (1915)
.. |... ...|..++.... +.++-. +|.|..|-....... .+ .......|..|+..... .+
T Consensus 95 g~-----P~~~-------~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gql-g~--~~~~~~~i~~i~~G~~~--~~ 154 (282)
T 3qhy_B 95 TV-----PAEA-------RSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQT-TV--PAEAQSGVTALDGGVYT--AL 154 (282)
T ss_dssp CC-----CGGG-------SSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTT-SC--CGGGGSSEEEEEECSSE--EE
T ss_pred CC-----Cccc-------CCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcC-CC--CccCCCCeEEEEcccCE--EE
Confidence 11 1111 135666665544 333344 899999976332211 11 11123457777654433 22
Q ss_pred EEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE
Q psy9598 680 SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV 759 (1915)
Q Consensus 680 sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~ 759 (1915)
.-. ||.|..|-...... +.. .......|..|+.......+ - . +|.|+.|-....-.+..
T Consensus 155 ~l~-~G~v~~wG~n~~gq----------lg~------p~~~~~~v~~i~~G~~hs~a--l-~-~G~v~~wG~n~~gqlg~ 213 (282)
T 3qhy_B 155 AVK-NGGVIAWGDNYFGQ----------TTV------PAEAQSGVDDVAGGIFHSLA--L-K-DGKVIAWGDNRYKQTTV 213 (282)
T ss_dssp EEE-TTEEEEEECCTTST----------TSC------CGGGGSSEEEEEECSSEEEE--E-E-TTEEEEEECCTTSTTCC
T ss_pred EEE-CCEEEEecCCCCCC----------CCC------ceecCCCeEEEEecCCEEEE--E-E-CCeEEEEECCCCCCCCC
Confidence 233 79999995443210 000 00112456667655433332 2 4 89999998654221111
Q ss_pred eeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcc
Q psy9598 760 LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 799 (1915)
Q Consensus 760 l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~ 799 (1915)
-......|..|+... ...++.. ||.|+.|-.....+
T Consensus 214 p~~~~~~v~~i~~G~--~h~~al~--~g~v~~wG~n~~gq 249 (282)
T 3qhy_B 214 PTEALSGVSAIASGE--WYSLALK--NGKVIAWGSSRTAP 249 (282)
T ss_dssp CGGGGSSCCEEEECS--SCEEEEE--TTEEEEESTTCCCC
T ss_pred CcccCCCceEEEcCC--CEEEEEE--CCEEEEecCCCCcc
Confidence 111123466776554 2333333 99999997655443
No 429
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.42 E-value=72 Score=38.47 Aligned_cols=195 Identities=7% Similarity=-0.118 Sum_probs=87.2
Q ss_pred CEEEEEECCCcEEEEECCC-CcEEEEE--eCCCCCEEEEEEeC--CCCEEEEEeCCC----cEEEEECCCCceEEEeec-
Q psy9598 489 EVIVTGADDLLIKLWRARD-GKLLATL--RGCSGEISDIAIDN--RNILLAAGTVDK----TIRIWNLQTLAPISVLVG- 558 (1915)
Q Consensus 489 ~~LaTGs~Dg~I~IWd~~t-g~~~~~l--~gH~~~I~~Lafsp--dg~~LaSgs~Dg----tIrVWDl~tg~~~~~l~~- 558 (1915)
..|++|+..| +.+++... +.....+ ......|.+|++.| .+.++|.+. .| .|... ...|..-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~-~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAAR-TGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEE-C--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEec-CCCCCccEEEe-CCCCCCceECCcc
Confidence 4677777777 44444332 2211111 12345699999998 555555443 44 33332 222322222211
Q ss_pred -------------CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc--Cccc--ccc---ccCCCC
Q psy9598 559 -------------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH--EPVM--FNE---RIRPGN 618 (1915)
Q Consensus 559 -------------h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~--~~~~--~~~---~~~~~~ 618 (1915)
+...|.+|++.|.. ....|++++..+.|...+ ..+......... .+.. +.. .-....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHAS--EPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTT--STTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred ccCCCcccccccccccceeEEEeCCCC--CCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCC
Confidence 11257788887621 025566666556554432 112111111000 0000 000 001123
Q ss_pred CceEEEEECCC-CcEEEEEeCCCeEEEEEecCCCCCceeEE-ecc-C--------CCCeeEEEEcCC-CCEEEEEeCCCc
Q psy9598 619 AHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILE-VEE-H--------SDKVDSIQWSHS-HLRFVSGSRDGT 686 (1915)
Q Consensus 619 ~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl~~~~~~~~i~~-l~~-h--------~~~V~sl~fspd-g~~L~sgs~DG~ 686 (1915)
..+.+|.++|. ...|++|..++.|...+- ...+...+.. +.. + ...+.+|++++. ...|++++..|
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 46889999983 345555555554433321 2222221110 000 0 134889999886 35676666554
Q ss_pred EEEEE
Q psy9598 687 ALIWY 691 (1915)
Q Consensus 687 I~IWD 691 (1915)
|...+
T Consensus 255 l~~s~ 259 (394)
T 3b7f_A 255 IYRMD 259 (394)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 44433
No 430
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.25 E-value=1.1e+02 Score=42.02 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=34.5
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK 761 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~ 761 (1915)
...+.+++..++..++++-+. |++++||++.+++++.+..
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~-D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSL-DYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEET-TCEEEEEETTTTEEEEEEE
T ss_pred cceEEEEeecCCCcEEEEEEC-CCEEEEEECCCCCeEeeec
Confidence 345777888888999999998 9999999999999998764
No 431
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.36 E-value=91 Score=38.78 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=34.5
Q ss_pred CCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCC---ceEEEee---------cCCCCeEEEEeccC
Q psy9598 519 GEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTL---APISVLV---------GHQGIITGVNFCPL 571 (1915)
Q Consensus 519 ~~I~~Lafspdg~-~LaSgs~DgtIrVWDl~tg---~~~~~l~---------~h~~~V~sl~fsp~ 571 (1915)
..-..|+|.|+|. .|+++...|.|++++.... ..+..+. +.......|+|+|.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3467899999986 3444567899999975432 1222221 11356789999995
No 432
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=81.59 E-value=86 Score=36.51 Aligned_cols=177 Identities=10% Similarity=-0.025 Sum_probs=90.2
Q ss_pred EEECCCCcEEEEEe--CCCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEEccCCceEEe
Q psy9598 624 SSFSPGGLFLATGS--GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-DGTALIWYYKCSQWRFI 700 (1915)
Q Consensus 624 l~fspdg~~Lasgs--~Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~-DG~I~IWDl~~~~~~~~ 700 (1915)
..|++++.+|+-.. .++.-.||-+...... ...+..+.. ++|++++..|+-.+. ...|.+-++..+....+
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence 36777888888765 3444444444322222 122323322 345677887775554 56676666655542221
Q ss_pred eecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecC-CeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCE
Q psy9598 701 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 779 (1915)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~D-g~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~ 779 (1915)
. ..... ..++|++.+|+-+...+ ..|..-++..+. ...|.. ..+ ..|+| ++.+
T Consensus 183 ~-------------------~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~-~g~~ 236 (302)
T 3s25_A 183 Y-------------------DCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNV-YGSL 236 (302)
T ss_dssp E-------------------CSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEE-ETTE
T ss_pred e-------------------CCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEE-CCCE
Confidence 1 00111 23558999988876522 367777775544 333432 223 33677 6666
Q ss_pred EEEEe--cCceEEEEECCCCccccceeeeeeecCCCCcceEEEEEcCCCCEEEEEe-CCCeEEEEeCC
Q psy9598 780 LLSAG--HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SYGHLLVYGLG 844 (1915)
Q Consensus 780 LaSgs--~DG~I~IWdl~s~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~-~dG~I~Iwdl~ 844 (1915)
|+-+. ..+.|..-++..... ..+. . +.+. ++++.+.+|+..+ ..+.|....+.
T Consensus 237 Iy~~~~~~~~~i~~~~~DG~~r---~~l~---~----~~~~--~i~i~~d~Iy~td~~~~~i~~~~~d 292 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKNDGTGF---KELA---K----GEFC--NINVTSQYVYFTDFVSNKEYCTSTQ 292 (302)
T ss_dssp EEEEECSSSCEEEEEETTSCCC---EEEE---E----SCEE--EEEECSSEEEEEETTTCCEEEEESS
T ss_pred EEEEECCCCcEEEEEECCCCcc---EEee---C----Cccc--eEEEeCCEEEEEECCCCeEEEEECC
Confidence 66543 345666667655433 1121 1 1122 4455667776665 23444444443
No 433
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=81.39 E-value=1 Score=42.22 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHhccCChHHHHHHHHHHHHhcCcCcccccccCccccccHHHHHhcCCCCCCChHHHHHHHhCCC
Q psy9598 306 DQELMLLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNVTASFLPKICQRLGPL 379 (1915)
Q Consensus 306 ~~e~~~li~~~L~~~~~~~aa~~L~~e~~~~~llp~r~~~~g~~~~~~~~~l~~~~~~i~~~~L~~l~~~l~pl 379 (1915)
..|+.+||++||++.|+..||.+|.+|..-.+ |. ....+|+|..|+.++|+.--+
T Consensus 5 sdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~-------~~------------~~~~~VppgaLVsllQKGL~Y 59 (90)
T 2xtc_A 5 SDEVNFLVYRYLQESGFSHSAFTFGIESHISQ-------SN------------INGTLVPPAALISILQKGLQY 59 (90)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG-------SC------------CCGGGSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc-------cc------------cccccCCcchHHHHHHHHHHH
Confidence 46899999999999999999999999972110 10 011458999999999987433
No 434
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=80.84 E-value=1.1e+02 Score=40.26 Aligned_cols=237 Identities=9% Similarity=0.039 Sum_probs=115.5
Q ss_pred EcCCCCEEEEEE-----CCCcEEEEECCCCcEEE-EEeCCCC--------CEEEEEEeCCCCEEEEEe----------CC
Q psy9598 484 FDKLGEVIVTGA-----DDLLIKLWRARDGKLLA-TLRGCSG--------EISDIAIDNRNILLAAGT----------VD 539 (1915)
Q Consensus 484 fspdg~~LaTGs-----~Dg~I~IWd~~tg~~~~-~l~gH~~--------~I~~Lafspdg~~LaSgs----------~D 539 (1915)
++|++++++.+- +-..|+++|+.+++.+. .|. ... ....++|..++.++++.. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 789998877652 22479999999998763 111 000 113458875555555421 12
Q ss_pred CcEEEEECCCCc--eEEEeecCCCCeE-EEEeccCccCCCc---EEEEEeCC---CeEEEEecccCccc-cceeccCccc
Q psy9598 540 KTIRIWNLQTLA--PISVLVGHQGIIT-GVNFCPLEVNGFN---YLASTSTD---GCIGFWKYKLDIDI-SKTVFHEPVM 609 (1915)
Q Consensus 540 gtIrVWDl~tg~--~~~~l~~h~~~V~-sl~fsp~~~~d~~---~L~sgs~D---gtI~iWDl~~~~~~-~~~~~~~~~~ 609 (1915)
..|+.|.+.+.. -...+.+....+. ++..+.+. ... .+++.+.+ ..+.+.+....... ..+..
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 288 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSD--TISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM----- 288 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCT--TTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS-----
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCC--CceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec-----
Confidence 568999887643 2334444333332 23333322 221 34444322 33455554422110 11111
Q ss_pred cccccCCCCCceEEEEECCCCcEEEEE----------eCCCeEEEEEecCCCC----CceeEE-e-ccCCCCeeEEEEcC
Q psy9598 610 FNERIRPGNAHILCSSFSPGGLFLATG----------SGDHHVRVYKMDGVDS----PLGILE-V-EEHSDKVDSIQWSH 673 (1915)
Q Consensus 610 ~~~~~~~~~~~V~~l~fspdg~~Lasg----------s~Dg~I~IwDl~~~~~----~~~i~~-l-~~h~~~V~sl~fsp 673 (1915)
+.... +..+.++.+++.. ...+.|.+.++..... ...... + ......+..+.|..
T Consensus 289 ------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (711)
T 4hvt_A 289 ------PSDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK 359 (711)
T ss_dssp ------CTTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS
T ss_pred ------CCcce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC
Confidence 11111 1233455554422 2467788888854211 111222 2 23344677888886
Q ss_pred CCCEEEEEeCCCc--EEEEEccCCceEEee-ecccccCCCCccccccccccccEEEEEECCCCCEEEEEE-e--cCCeEE
Q psy9598 674 SHLRFVSGSRDGT--ALIWYYKCSQWRFIR-LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI-N--FNFQIK 747 (1915)
Q Consensus 674 dg~~L~sgs~DG~--I~IWDl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s-~--~Dg~I~ 747 (1915)
+ .++++...+|. |.++++.++.+.... .. . ...+.+..+.+++++..++... + .-+.+.
T Consensus 360 ~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~-------------l-p~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~ 424 (711)
T 4hvt_A 360 D-RVFLATYDNVVAKVVTFTLENEQWTKPVVLK-------------L-PYQNAIFGMSSYEEEEEALITIENSIVPPTIY 424 (711)
T ss_dssp S-CEEEEEEETTEEEEEEECEETTEECCCEEEC-------------C-CSTTCEEEEECCTTCSCEEEEEECSSSCCEEE
T ss_pred C-EEEEEEEECCEEEEEEEECCCCceEEEeccC-------------C-CCCeEEEEEeecCcCCEEEEEEecCCCCCEEE
Confidence 5 56777777775 556666555321100 00 0 0113455566667665444433 2 235677
Q ss_pred EEECC
Q psy9598 748 IWDAF 752 (1915)
Q Consensus 748 vwD~~ 752 (1915)
.+|+.
T Consensus 425 ~~d~~ 429 (711)
T 4hvt_A 425 LWVKT 429 (711)
T ss_dssp EECTT
T ss_pred EEeCC
Confidence 77776
No 435
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=80.77 E-value=1.5e+02 Score=38.89 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=42.9
Q ss_pred cccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCc-eEEE-eeCC-CCCeEEEEEccCCCCEEEEEec---CceEEEE
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGD-LVQV-LKGH-TNEVFVLESHPFDSRVLLSAGH---DGLIIIW 792 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg--~I~vwD~~tg~-~i~~-l~gH-~~~V~sl~~sp~dg~~LaSgs~---DG~I~IW 792 (1915)
...+..+.|..+ .++++... ++ .|.++++.++. .+.. +... .+.|..+.+.+..+.++++.+. -+.|..+
T Consensus 349 ~~~l~~~~~~~~-~l~~~~~~-~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~ 426 (711)
T 4hvt_A 349 NEVFNFISTTKD-RVFLATYD-NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLW 426 (711)
T ss_dssp TEEEEEEEECSS-CEEEEEEE-TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEE
T ss_pred CCeEEEEEEECC-EEEEEEEE-CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEE
Confidence 456778888865 45555544 66 46777776664 2222 2211 2456666666644556666554 3678888
Q ss_pred ECC
Q psy9598 793 DIL 795 (1915)
Q Consensus 793 dl~ 795 (1915)
|+.
T Consensus 427 d~~ 429 (711)
T 4hvt_A 427 VKT 429 (711)
T ss_dssp CTT
T ss_pred eCC
Confidence 876
No 436
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.28 E-value=1.3e+02 Score=41.20 Aligned_cols=37 Identities=14% Similarity=-0.107 Sum_probs=31.9
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEee
Q psy9598 665 KVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 701 (1915)
Q Consensus 665 ~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~ 701 (1915)
.+.+++..++..++++-+.|+++|||++.+++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5677778888889999999999999999999987653
No 437
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=78.06 E-value=1.1e+02 Score=35.61 Aligned_cols=208 Identities=5% Similarity=-0.053 Sum_probs=102.2
Q ss_pred CCCEEEEEE--CCCcEEEEECCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCC--------------CcEEEEECCCC
Q psy9598 487 LGEVIVTGA--DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD--------------KTIRIWNLQTL 550 (1915)
Q Consensus 487 dg~~LaTGs--~Dg~I~IWd~~tg~~~~~l~gH~~~I~~Lafspdg~~LaSgs~D--------------gtIrVWDl~tg 550 (1915)
+|.+|+... .++.|...+..... ...+.. . .+--++++|.+|+-+... ..|+..++..+
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--E--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred eCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--C--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 466666554 24556666653333 222321 1 234457788887766542 46777888766
Q ss_pred ceEEEeecCCCCeEEEEeccCccCCCcEEEEEe--CCC--eEEEEecccCccccceeccCccccccccCCCCCceEEEEE
Q psy9598 551 APISVLVGHQGIITGVNFCPLEVNGFNYLASTS--TDG--CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 551 ~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs--~Dg--tI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
....... .. +..|++.+ ..|+.+. .++ .|...++.... ...+. . + .+ ..|
T Consensus 99 ~~~~l~~-~~----~~~~s~~g----~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt-~-----------~--~~--~~~ 152 (302)
T 3s25_A 99 GSTVLDP-DP----CIYASLIG----NYIYYLHYDTQTATSLYRIRIDGEE-KKKIK-N-----------H--YL--FTC 152 (302)
T ss_dssp CCEEEEC-SC----EEEEEEET----TEEEEEEESSSSCEEEEEEETTSCC-CEEEE-S-----------S--CC--CCS
T ss_pred cceEeec-CC----ccEEEEeC----CEEEEEeecCCCCceEEEEECCCCC-eEEEe-C-----------C--Cc--eEe
Confidence 5433322 11 22556633 5666554 334 44444444322 11111 1 1 11 345
Q ss_pred CCCCcEEEEEeC-CCeEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCC--cEEEEEccCCceEEeeec
Q psy9598 627 SPGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIRLD 703 (1915)
Q Consensus 627 spdg~~Lasgs~-Dg~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG--~I~IWDl~~~~~~~~~~~ 703 (1915)
+++|..|+-.+. ...|.+.++.+.. ...+ +. +... +.++|++.+|+-....+ .|..-++.......+
T Consensus 153 ~~~g~~iy~t~~g~~~Iy~~~l~g~~-~~~l--~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~L--- 222 (302)
T 3s25_A 153 NTSDRYFYYNNPKNGQLYRYDTASQS-EALF--YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVL--- 222 (302)
T ss_dssp EEETTEEEEECTTTCCEEEEETTTTE-EEEE--EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEEC---
T ss_pred eEECCEEEEEeCCCceEEEEECCCCC-EEEE--eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEE---
Confidence 677777776554 5677777764322 1111 22 2222 34568888777665443 333333433331110
Q ss_pred ccccCCCCccccccccccccEEEEEECCCCCEEEEEEe-cCCeEEEEECCC
Q psy9598 704 MNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN-FNFQIKIWDAFN 753 (1915)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~-~Dg~I~vwD~~t 753 (1915)
. ...+ ..|+|++.+|+.+.. ..+.|..-++..
T Consensus 223 --------------t--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 223 --------------T--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp --------------S--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred --------------e--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 0 0112 237788888887643 235677667643
No 438
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=76.82 E-value=1.2e+02 Score=35.45 Aligned_cols=210 Identities=11% Similarity=0.038 Sum_probs=109.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCce-------EEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccc
Q psy9598 528 NRNILLAAGTVDKTIRIWNLQTLAP-------ISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI 599 (1915)
Q Consensus 528 pdg~~LaSgs~DgtIrVWDl~tg~~-------~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~ 599 (1915)
++..++++.+.+|.|+--.+..... +..+. ...+.+..+..+. ....++..+..|.+.-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~----~~~~ll~~T~~G~~~~~~~~~ip~~ 81 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN----THDYLFMISNEGKLYLINAYEIKDS 81 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE----TTCEEEEEETTSEEEEEEGGGSCC-
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC----CCCEEEEEECCCeEEEEEHHHCCCC
Confidence 4566788889999998876643211 11111 1123344444443 2367888888888776655321111
Q ss_pred cceeccCccccccccCCCCCceEEEEECC---CCcEEEEEeCCCeEEEEEecCCC----CCceeEEeccCCCCeeEEEEc
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSFSP---GGLFLATGSGDHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~fsp---dg~~Lasgs~Dg~I~IwDl~~~~----~~~~i~~l~~h~~~V~sl~fs 672 (1915)
.......+....-.+..+ ..|.++.... +..+|+..+..|.++...+.... .......+.. .+.+.++...
T Consensus 82 ~r~~~G~~i~~~l~l~~~-e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~ 159 (312)
T 1suu_A 82 SRASKGQNISELINLGDQ-EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIV 159 (312)
T ss_dssp ------CBGGGTSCCCTT-CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEE
T ss_pred CccCCCcChhhccCCCCC-CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEe
Confidence 011111111111122233 3344443332 45678888999999998874321 2222223333 4556666655
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 673 HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 673 pdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
..+..++..+.+|.+..+....-.. +.....+ ....... ....|..+..-.++..|++.+. .|.++...+.
T Consensus 160 ~~~~~i~l~T~~G~~~r~~~~ev~~------~gR~~~G-v~~i~L~-~~d~vv~~~~v~~~~~l~~vt~-~G~~kr~~~~ 230 (312)
T 1suu_A 160 FKDEKVICLSKKGSAFIFNSRDVRL------TNRGTQG-VCGMKLK-EGDLFVKVLSVKENPYLLIVSE-NGYGKRLNMS 230 (312)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCB------CCTTBCC-EECCCCC-TTCCEEEEEECTTCSEEEEEET-TSEEEEEEGG
T ss_pred CCCCEEEEEeCCCcEEEEEHHHccc------cCCCCCC-eEeEEeC-CCCEEEEEEEECCCCeEEEEEC-CCceEEEEHH
Confidence 5566788899999998887653210 0000001 0111111 2345555555555666777776 8988888874
No 439
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=76.59 E-value=2 Score=38.03 Aligned_cols=51 Identities=6% Similarity=0.163 Sum_probs=42.2
Q ss_pred CCCCCCCeEEEEEcC-eeEEEEEeecCCCCCCCceeeEEEeCCCCCCCcCCCCCCCC
Q psy9598 1279 REWNVGDRFCSMIDD-AWWWGTIEGKPSPTKSPFLGYKILWDNNERENLSPWDLEPP 1334 (1915)
Q Consensus 1279 ~~~~~g~rf~~~~~~-~~~~G~i~~~~~~~~s~w~~~~v~wd~~~~~~~spw~~~~~ 1334 (1915)
-.|++|+++-.+|.| .||-|+|+++..- ..|.|.++.+..+.|.+=+|-|+
T Consensus 5 ~~~~vGd~vmArW~D~~yYpA~I~si~~~-----~~Y~V~F~dG~~etvk~~~ikp~ 56 (67)
T 3p8d_A 5 SEFQINEQVLACWSDCRFYPAKVTAVNKD-----GTYTVKFYDGVVQTVKHIHVKAF 56 (67)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEECTT-----SEEEEEETTSCEEEEEGGGEEEC
T ss_pred cccccCCEEEEEcCCCCEeeEEEEEECCC-----CeEEEEEeCCceEEEeHHHcccC
Confidence 489999999999955 4999999999752 46999999988888777677665
No 440
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=75.20 E-value=1.5e+02 Score=35.70 Aligned_cols=194 Identities=11% Similarity=0.067 Sum_probs=98.1
Q ss_pred CCEEEEEECCCcEEEEECCCC--------c---EEEEEeC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc----
Q psy9598 488 GEVIVTGADDLLIKLWRARDG--------K---LLATLRG-CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA---- 551 (1915)
Q Consensus 488 g~~LaTGs~Dg~I~IWd~~tg--------~---~~~~l~g-H~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~---- 551 (1915)
....+.-..||.|..|-.... . ....+.. ....|..++++....+.+.-+.||.|..|-....-
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 344555567777777754321 1 1111221 22345556777777777777889999999654210
Q ss_pred ----e---EEEeec-CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc---CccccccccCCCCCc
Q psy9598 552 ----P---ISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH---EPVMFNERIRPGNAH 620 (1915)
Q Consensus 552 ----~---~~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 620 (1915)
. ...+.. ....|..|+... ...+....+|.|..|-......+...... .|.. ... .....
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G~------~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~-v~~--~~~~~ 212 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAGG------AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKL-VEA--LQGHR 212 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECS------SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE-CGG--GTTSC
T ss_pred CCCccCcCCeEecccCCCeEEEEEeCc------CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceE-ecc--cCCCe
Confidence 0 111111 112566666543 45566677999999965432211110000 0100 001 11234
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEecCCCC-------Ccee-EEeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy9598 621 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS-------PLGI-LEVEEH-SDKVDSIQWSHSHLRFVSGSRDGTALIWY 691 (1915)
Q Consensus 621 V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~-------~~~i-~~l~~h-~~~V~sl~fspdg~~L~sgs~DG~I~IWD 691 (1915)
|..++......+.++-..+|.|..|-...... .... ..+... ...|..|+.. ..+.+.-..+|.|..|=
T Consensus 213 v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG 290 (389)
T 3kci_A 213 VVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWG 290 (389)
T ss_dssp EEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred EEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEe
Confidence 66666554345666677889999996531110 0011 111111 1245565543 33455557899999995
Q ss_pred c
Q psy9598 692 Y 692 (1915)
Q Consensus 692 l 692 (1915)
.
T Consensus 291 ~ 291 (389)
T 3kci_A 291 K 291 (389)
T ss_dssp C
T ss_pred C
Confidence 4
No 441
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=74.50 E-value=2.4 Score=39.28 Aligned_cols=53 Identities=6% Similarity=0.135 Sum_probs=42.2
Q ss_pred HcCCCCCCCeEEEEEcC-eeEEEEEeecCCCCCCCceeeEEEeCCCCCCCcCCCCCCCC
Q psy9598 1277 IAREWNVGDRFCSMIDD-AWWWGTIEGKPSPTKSPFLGYKILWDNNERENLSPWDLEPP 1334 (1915)
Q Consensus 1277 ~~~~~~~g~rf~~~~~~-~~~~G~i~~~~~~~~s~w~~~~v~wd~~~~~~~spw~~~~~ 1334 (1915)
-...|++|++|-.+|.| .||-++|+++..= ..|.|+++++-.+.|.+=+|-|+
T Consensus 18 ~~~~f~vGd~VlArW~D~~yYPAkI~sV~~~-----~~YtV~F~DG~~etvk~~~IKp~ 71 (85)
T 3qii_A 18 GSSEFQINEQVLACWSDCRFYPAKVTAVNKD-----GTYTVKFYDGVVQTVKHIHVKAF 71 (85)
T ss_dssp ---CCCTTCEEEEECTTSCEEEEEEEEECTT-----SEEEEEETTSCEEEEEGGGEEEC
T ss_pred CCcccccCCEEEEEeCCCCEeeEEEEEECCC-----CeEEEEEeCCCeEEecHHHcccC
Confidence 34689999999999955 4999999999852 36999999988888877777666
No 442
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.52 E-value=3 Score=37.85 Aligned_cols=52 Identities=10% Similarity=0.162 Sum_probs=39.8
Q ss_pred cCCCCCCCeEEEEE-cCeeEEEEEeecCCCCCCCceeeEEEeCCCCCCCcCCCCCCCC
Q psy9598 1278 AREWNVGDRFCSMI-DDAWWWGTIEGKPSPTKSPFLGYKILWDNNERENLSPWDLEPP 1334 (1915)
Q Consensus 1278 ~~~~~~g~rf~~~~-~~~~~~G~i~~~~~~~~s~w~~~~v~wd~~~~~~~spw~~~~~ 1334 (1915)
...|++||++..+| |+.||.++|.++.+ + ..|.|.++....+.|.+=.|-|+
T Consensus 7 ~~~~kvGd~clA~wsDg~~Y~A~I~~v~~--~---~~~~V~f~Dyn~e~v~~~~lrpl 59 (74)
T 2equ_A 7 GFDFKAGEEVLARWTDCRYYPAKIEAINK--E---GTFTVQFYDGVIRCLKRMHIKAM 59 (74)
T ss_dssp CCCCCTTCEEEEECSSSSEEEEEEEEEST--T---SSEEEEETTSCEEEECGGGEECC
T ss_pred CCCCCCCCEEEEECCCCCEEEEEEEEECC--C---CEEEEEEecCCeEEecHHHCeeC
Confidence 35799999999999 55799999999864 2 47899998876666654455544
No 443
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=73.11 E-value=3.4 Score=35.07 Aligned_cols=44 Identities=16% Similarity=0.370 Sum_probs=31.7
Q ss_pred CCCCCCeEEEEE--cCeeEEEEEeecCCCCCCCceeeEEEeCC-CCCCCcC
Q psy9598 1280 EWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWDN-NERENLS 1327 (1915)
Q Consensus 1280 ~~~~g~rf~~~~--~~~~~~G~i~~~~~~~~s~w~~~~v~wd~-~~~~~~s 1327 (1915)
.|++|+.+...| |+.||.++|.++.. .. ..+.|.+.. |..+.|+
T Consensus 1 ~wk~G~~c~A~~s~Dg~wYrA~I~~i~~--~~--~~~~V~fvDYGn~e~v~ 47 (54)
T 3s6w_A 1 MWKPGDECFALYWEDNKFYRAEVEALHS--SG--MTAVVKFIDYGNYEEVL 47 (54)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEC----CC--SEEEEEETTTCCEEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEeC--CC--CEEEEEEEccCCeEEEe
Confidence 499999999999 66799999998853 11 456788864 5555444
No 444
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=72.80 E-value=1.7e+02 Score=35.37 Aligned_cols=200 Identities=11% Similarity=0.094 Sum_probs=96.4
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCC-Cc----------EEEEEeC-CCCCEEEEEEeCCCCEEEEEeCC-CcEE
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARD-GK----------LLATLRG-CSGEISDIAIDNRNILLAAGTVD-KTIR 543 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~t-g~----------~~~~l~g-H~~~I~~Lafspdg~~LaSgs~D-gtIr 543 (1915)
..|..|+.. +...+.-..||.|..|-... |+ ....+.. ....|..|+...+ +.+.-..+ +.|.
T Consensus 16 ~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred cceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 345555554 34455556778888886432 11 1111111 1235777766543 33333445 4899
Q ss_pred EEECCCC------c--eEE---Eeec-CCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceecc---Ccc
Q psy9598 544 IWNLQTL------A--PIS---VLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH---EPV 608 (1915)
Q Consensus 544 VWDl~tg------~--~~~---~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~---~~~ 608 (1915)
.|-.... . ... .+.. ....|..|+... ...+.-..+|.|..|-......+..-... .|.
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~------~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~ 165 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD------SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQ 165 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS------SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEE
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh------hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccce
Confidence 9965321 0 011 1111 223566666543 45566678899999975443221110000 000
Q ss_pred ccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCC-------Ccee-EEecc-CCCCeeEEEEcCCCCEEE
Q psy9598 609 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS-------PLGI-LEVEE-HSDKVDSIQWSHSHLRFV 679 (1915)
Q Consensus 609 ~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~-------~~~i-~~l~~-h~~~V~sl~fspdg~~L~ 679 (1915)
. ...+ ....|..++. ...+.++-..+|.|..|-...... .... ..+.. ....|..|+.. ..+.+
T Consensus 166 ~-v~~~--~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~ 238 (406)
T 4d9s_A 166 K-IQAF--EGIRIKMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTI 238 (406)
T ss_dssp E-CGGG--TTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEE
T ss_pred E-eccc--CCCcEEEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEE
Confidence 0 0001 1124555544 334566667889999997532111 0000 01111 12345555543 33555
Q ss_pred EEeCCCcEEEEEcc
Q psy9598 680 SGSRDGTALIWYYK 693 (1915)
Q Consensus 680 sgs~DG~I~IWDl~ 693 (1915)
.-+.+|.|..|-..
T Consensus 239 ~l~~~G~v~~wG~n 252 (406)
T 4d9s_A 239 SVSYSGALYTYGWS 252 (406)
T ss_dssp EEETTCCEEEEECC
T ss_pred EEcCCCCEEEeeCC
Confidence 66789999999543
No 445
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=71.18 E-value=1.5e+02 Score=33.99 Aligned_cols=228 Identities=16% Similarity=0.088 Sum_probs=116.6
Q ss_pred CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC
Q psy9598 561 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH 640 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg 640 (1915)
..|..|+... ...++. . ||.|..|-......+.. +.. ....|..++..... .++. . ||
T Consensus 24 ~~i~~ia~G~-----~h~~~l-~-~G~v~~wG~n~~Gqlg~-----p~~-------~~~~i~~ia~G~~h-s~~l-~-~G 81 (282)
T 3qhy_B 24 SGVDAIAGGY-----FHGLAL-K-GGKVLGWGANLNGQLTM-----PAA-------TQSGVDAIAAGNYH-SLAL-K-DG 81 (282)
T ss_dssp SSCCEEEECS-----SEEEEE-E-TTEEEEEECCSSSTTSC-----CGG-------GGSCCCEEEECSSE-EEEE-E-TT
T ss_pred CCCcEEEeCC-----CeEEEE-E-CCEEEEEeCCCCCCCCC-----Ccc-------CCCCEEEEEeCCCE-EEEE-E-CC
Confidence 3567776643 234444 4 99999997655432221 110 01245555554433 2333 4 89
Q ss_pred eEEEEEecCCCCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccc
Q psy9598 641 HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 720 (1915)
Q Consensus 641 ~I~IwDl~~~~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1915)
.|..|-.......- + ...-...|..|+.... +.+.-. ||.|..|-...... +.. ....
T Consensus 82 ~v~~wG~n~~Gqlg-~--P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gq----------lg~------~~~~ 139 (282)
T 3qhy_B 82 EVIAWGGNEDGQTT-V--PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQ----------TTV------PAEA 139 (282)
T ss_dssp EEEEEECCTTSTTC-C--CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTST----------TSC------CGGG
T ss_pred EEEEeeCCCCCCCC-C--CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCc----------CCC------CccC
Confidence 99999764322111 0 0111346777776544 334444 99999995433210 000 0012
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCccc
Q psy9598 721 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR 800 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~ 800 (1915)
...|..|+....... +.. ||.|+.|-....-.+..-..-...|..|+... ...++. .||.|+.|-.......
T Consensus 140 ~~~i~~i~~G~~~~~---~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~--~hs~al--~~G~v~~wG~n~~gql 211 (282)
T 3qhy_B 140 QSGVTALDGGVYTAL---AVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGI--FHSLAL--KDGKVIAWGDNRYKQT 211 (282)
T ss_dssp GSSEEEEEECSSEEE---EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEE--ETTEEEEEECCTTSTT
T ss_pred CCCeEEEEcccCEEE---EEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecC--CEEEEE--ECCeEEEEECCCCCCC
Confidence 234666665433322 223 78999997654221111111124577777654 233333 5999999987654331
Q ss_pred cceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccc
Q psy9598 801 GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQ 850 (1915)
Q Consensus 801 ~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~ 850 (1915)
++. ......|..++-... ..+|.. +|.|+.|.......+.
T Consensus 212 g~p-------~~~~~~v~~i~~G~~-h~~al~--~g~v~~wG~n~~gq~~ 251 (282)
T 3qhy_B 212 TVP-------TEALSGVSAIASGEW-YSLALK--NGKVIAWGSSRTAPSS 251 (282)
T ss_dssp CCC-------GGGGSSCCEEEECSS-CEEEEE--TTEEEEESTTCCCCGG
T ss_pred CCC-------cccCCCceEEEcCCC-EEEEEE--CCEEEEecCCCCcccc
Confidence 110 011234666665443 333333 8999999988754433
No 446
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.96 E-value=1.7e+02 Score=34.48 Aligned_cols=249 Identities=10% Similarity=-0.044 Sum_probs=128.1
Q ss_pred CcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCC----
Q psy9598 576 FNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD---- 651 (1915)
Q Consensus 576 ~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~---- 651 (1915)
...+++.+.+|.|+--.+.+-...... .... ....+ .....+..+........|+.-+..|.++...+....
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rg-g~g~--~~~~~-ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r 78 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRG-GKGV--QGAGL-KQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR 78 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC-----------CCC-CGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccC-CCCc--ccccc-CCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 367888899999886654321110000 0000 00001 112344444444455566666777876655542111
Q ss_pred --CCcee---EEeccCCCCeeEEE-EcC--CCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCcccccccccccc
Q psy9598 652 --SPLGI---LEVEEHSDKVDSIQ-WSH--SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 723 (1915)
Q Consensus 652 --~~~~i---~~l~~h~~~V~sl~-fsp--dg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1915)
....+ ..+. ....|.++. +.. +..+++..+.+|.|+...+....... ........... ...
T Consensus 79 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~---------r~G~~~i~lke-~D~ 147 (327)
T 3uc1_A 79 TARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNR---------SGGIVAVNLRD-NDE 147 (327)
T ss_dssp SSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCC---------SSCEESCBCCT-TCC
T ss_pred cCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccc---------cCceEEEEECC-CCE
Confidence 11111 1122 234455554 332 46799999999999988765432100 00011111112 334
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECC--CC---------ceEEEeeCCCCCeEEEEEccCCCCEEEEEecCceEEEE
Q psy9598 724 VTMVAWDASDRWVITAINFNFQIKIWDAF--NG---------DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 792 (1915)
Q Consensus 724 V~~va~spdg~~L~t~s~~Dg~I~vwD~~--tg---------~~i~~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IW 792 (1915)
+..+........|+..+. .|.+..+... .- ..+..|. ....|.++...+ .+..|+.++..|.++.-
T Consensus 148 lv~~~~~~~~d~ill~T~-~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt 224 (327)
T 3uc1_A 148 LVGAVLCSAGDDLLLVSA-NGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVR-EGTYLLVATSGGYAKRT 224 (327)
T ss_dssp EEEEEEECTTCEEEEEET-TSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECC-TTCEEEEEETTSEEEEE
T ss_pred EEEEEEecCCCEEEEEEC-CCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEEC-CCCEEEEEeCCCcEEEE
Confidence 444444445567777777 8988888776 21 1111122 234566666555 56689999999999988
Q ss_pred ECCCCcc-----ccceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy9598 793 DILSSKQ-----RGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 845 (1915)
Q Consensus 793 dl~s~~~-----~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s 845 (1915)
.+..-.. .++..+. .....+.+..+....+...|+..+..|.+.-+....
T Consensus 225 ~l~e~~~~~R~~~G~~~~~---l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 225 AIEEYPVQGRGGKGVLTVM---YDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EGGGSCBCCTTSCCEESSC---CCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EHHHccccCcCCCcEEEEE---ecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 8754332 1111111 111123455554444556677777778888887654
No 447
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=70.25 E-value=2.8e+02 Score=36.63 Aligned_cols=105 Identities=11% Similarity=0.023 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCC-CEEEEEECCCcEEEEECCCCcEEEEEeCC-------CCCEEEEEEeCC--CCEEEEEeC-C-----C
Q psy9598 477 SAVFCVLFDKLG-EVIVTGADDLLIKLWRARDGKLLATLRGC-------SGEISDIAIDNR--NILLAAGTV-D-----K 540 (1915)
Q Consensus 477 ~~V~~vafspdg-~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH-------~~~I~~Lafspd--g~~LaSgs~-D-----g 540 (1915)
+.|.+|+|+|.. ..|++++..|.|..++ ..|+.-..+..+ ...|.+|+++|. +.++++++. . +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 379999999863 4566677666665554 234433333322 235999999983 334444321 0 1
Q ss_pred cEEEEEC-CCCceEEEee-cCC--------CCeEEEEeccCccCCCcEEEEEeCC
Q psy9598 541 TIRIWNL-QTLAPISVLV-GHQ--------GIITGVNFCPLEVNGFNYLASTSTD 585 (1915)
Q Consensus 541 tIrVWDl-~tg~~~~~l~-~h~--------~~V~sl~fsp~~~~d~~~L~sgs~D 585 (1915)
...||-- ..|+.-..+. ... ..+.+|++.|.. ...|+.+...
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~---~~~v~~g~~~ 153 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPND---NRILYLGTRC 153 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSC---TTCEEEECST
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCC---CCEEEEeecc
Confidence 2344543 3333222221 110 124678898853 3566666633
No 448
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=70.17 E-value=1.9e+02 Score=34.71 Aligned_cols=160 Identities=6% Similarity=0.036 Sum_probs=86.6
Q ss_pred eCCCCEEEEEeCCCcEEEEECCC---------CceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCc
Q psy9598 527 DNRNILLAAGTVDKTIRIWNLQT---------LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 597 (1915)
Q Consensus 527 spdg~~LaSgs~DgtIrVWDl~t---------g~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~ 597 (1915)
-++..++++.+.+|.|+--.+.+ |..-..+. ..+.+..+..+.. ...|+..+..|.+..+....-.
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t----~d~ll~fT~~G~~~~~~~~eip 78 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNT----HDTLLTFTSSGKVFWLPVHQLP 78 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECT----TCEEEEEETTSEEEEEEGGGSC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecC----CCEEEEEeCCCeEEEEEHHHCc
Confidence 36677899999999998765421 12222232 3445555555442 3667777778877655432211
Q ss_pred cccceeccCccccccccCCCCCceEEE-EEC--CCCcEEEEEeCCCeEEEEEecCCC----CCceeEEeccCCCCeeEEE
Q psy9598 598 DISKTVFHEPVMFNERIRPGNAHILCS-SFS--PGGLFLATGSGDHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~V~~l-~fs--pdg~~Lasgs~Dg~I~IwDl~~~~----~~~~i~~l~~h~~~V~sl~ 670 (1915)
.........+....-.+... ..|.++ .+. ..+.+|+.++..|.++...+.... .......+.. .+.+..+.
T Consensus 79 ~~~r~a~G~~i~~ll~L~~~-e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~ 156 (370)
T 3l6v_A 79 EAGSNARGRPIINWIPLESG-ERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVA 156 (370)
T ss_dssp BCCTTSCCEEGGGSCCCCTT-CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEE
T ss_pred CCCcccCCcCHhhccCCCCC-CEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEE
Confidence 10000001111111112223 445544 333 245689999999999998874221 1222223333 34555555
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
.......|+..+..|.+..+...
T Consensus 157 ~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 157 LTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp EECSCCEEEEEETTSEEEEEEGG
T ss_pred EeCCCceEEEEeCCCeEEEEEcc
Confidence 55556678888889988888754
No 449
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=67.87 E-value=1.9e+02 Score=33.74 Aligned_cols=251 Identities=10% Similarity=0.017 Sum_probs=124.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEE---------EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccc
Q psy9598 529 RNILLAAGTVDKTIRIWNLQTLAPIS---------VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI 599 (1915)
Q Consensus 529 dg~~LaSgs~DgtIrVWDl~tg~~~~---------~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~ 599 (1915)
+..++++.+.+|.|+--.+.+..... .+.. .+.+..+..+. ....|+..+..|.+..+....-...
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~----~~~~ll~fT~~G~~~~~~~~elp~~ 76 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVAN----THDHILCFSSRGRVYSMKVYQLPEA 76 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE----TTCEEEEEETTSEEEEEEGGGSCCC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEEC----CCCEEEEEECCCEEEEEEhhHCcCC
Confidence 45578888899999877665432211 1111 23333433333 2367777777887665554321111
Q ss_pred cceeccCccccccccCCCCCceEEEEE-C--CCCcEEEEEeCCCeEEEEEecCCC----CCceeEEeccCCCCeeEEEEc
Q psy9598 600 SKTVFHEPVMFNERIRPGNAHILCSSF-S--PGGLFLATGSGDHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQWS 672 (1915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~V~~l~f-s--pdg~~Lasgs~Dg~I~IwDl~~~~----~~~~i~~l~~h~~~V~sl~fs 672 (1915)
.......+....-.+.. ...|.++.. . .++.+++..+.+|.++-..+.... .......+..+ +.+..+...
T Consensus 77 ~~~a~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~ 154 (307)
T 1zi0_A 77 TRGARGRPIVNLLPLEQ-DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLT 154 (307)
T ss_dssp CSSSCCEEGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEE
T ss_pred CCCCCCeEhhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEe
Confidence 11111111111111222 234555533 2 345678899999999998874211 12222233344 555555555
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy9598 673 HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 752 (1915)
Q Consensus 673 pdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~ 752 (1915)
.....|+..+.+|.+..+....-.. +.....+.. .... .....|.++....++..|++.+. .|.++..++.
T Consensus 155 ~~~~~i~l~T~~G~~irf~~~~v~~------~gr~a~Gv~-~i~L-~~~d~Vv~~~~~~~~~~ll~~T~-~G~~Kr~~~~ 225 (307)
T 1zi0_A 155 SGEDEVMLFSAEGKVVRFKESSVRA------MGCNTTGVR-GIRL-GEGDKVVSLIVPRGDGAILTATQ-NGYGKRTAVA 225 (307)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCB------CCTTCCCEE-CCCC-CTTCCEEEEECCCSSCEEEEEET-TSEEEEECGG
T ss_pred CCCCEEEEECCCCcEEEEEHHHcCc------cCCCCCCeE-eEEe-CCCCEEEEEEEecCCCEEEEEEc-CCceEEEEHH
Confidence 5556788888899888876643210 000000100 0111 13345666655555667777776 8888888763
Q ss_pred CC-------ceEE--EeeCCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 753 NG-------DLVQ--VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 753 tg-------~~i~--~l~gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
.. .-+. .+....+.+..+.... +..-|+..+.+|.+.-+.+..
T Consensus 226 e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 226 EYPTKSRATKGVISIKVTERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp GSCCCCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred HhccCCCCCCCEEeeEecCCCCeEEEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 21 1122 2222234454444433 344566667777777666654
No 450
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=67.25 E-value=2.2e+02 Score=34.30 Aligned_cols=109 Identities=9% Similarity=0.037 Sum_probs=57.2
Q ss_pred ccEEEEEECCC----CCEEEEEEecCCeEEEEE---CCCC---ceEEEee--CCCCCeEEEEEccCCCCEEEEEecCceE
Q psy9598 722 IKVTMVAWDAS----DRWVITAINFNFQIKIWD---AFNG---DLVQVLK--GHTNEVFVLESHPFDSRVLLSAGHDGLI 789 (1915)
Q Consensus 722 ~~V~~va~spd----g~~L~t~s~~Dg~I~vwD---~~tg---~~i~~l~--gH~~~V~sl~~sp~dg~~LaSgs~DG~I 789 (1915)
..|..|+++|+ ++.|+...-....++--. ++.. ..+..+- +..+....+++.+.+|.++++--....|
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI 299 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQV 299 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEE
T ss_pred cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeE
Confidence 35778999988 778877765233333332 1121 1222221 1112334556653367778888888999
Q ss_pred EEEECCC-CccccceeeeeeecCCCCcceEEEEEcCCCCEEEEE
Q psy9598 790 IIWDILS-SKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 832 (1915)
Q Consensus 790 ~IWdl~s-~~~~~~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg 832 (1915)
..|+..+ .-. ...+..+........+.++++..+|.+.+.+
T Consensus 300 ~~w~~~~~~~~--~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 300 SCWNTQKMPLR--MKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEETTSCSBC--GGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCccc--cCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 9999875 211 1112222222233455666666565544444
No 451
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=66.75 E-value=4.5 Score=35.00 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=37.5
Q ss_pred CCCCCCCeEEEEE--cCeeEEEEEeecCCCCCCCceeeEEEeCC-CCCCCcCCCCCCCC
Q psy9598 1279 REWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWDN-NERENLSPWDLEPP 1334 (1915)
Q Consensus 1279 ~~~~~g~rf~~~~--~~~~~~G~i~~~~~~~~s~w~~~~v~wd~-~~~~~~spw~~~~~ 1334 (1915)
+.|++|+.|...| |+.||.++|+++.+ . =..+.|.+.. |..+.|..=+|-|+
T Consensus 2 ~~~~~G~~c~A~~s~Dg~wYrA~I~~i~~--~--~~~~~V~f~DYGn~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDGCIYPATIASIDF--K--RETCVVVYTGYGNREEQNLSDLLSP 56 (59)
T ss_dssp CCCCTTCEEEEECTTTSCEEEEEEEEEET--T--TTEEEEEETTTTEEEEEEGGGCBCT
T ss_pred CcCCcCCEEEEEECCCCCEEEEEEEEEcC--C--CCEEEEEEEcCCCEEEEcHHHeeCC
Confidence 5799999999999 56799999998853 1 1467888875 66666554444443
No 452
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=65.85 E-value=1.9e+02 Score=33.11 Aligned_cols=206 Identities=11% Similarity=0.052 Sum_probs=113.7
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEE---ECCCCcEEEEEeCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCc-
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLW---RARDGKLLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTLA- 551 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IW---d~~tg~~~~~l~gH~~~I~~Lafsp-dg~~LaSgs~DgtIrVWDl~tg~- 551 (1915)
+.|.++....+..+|+.-+..|.++-- ++..+.....+. ....|..+.... +..+++.++.+|.|+...+....
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 456666655555667777778876643 333221111132 345566664421 46789999999999998875432
Q ss_pred -----eEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEE
Q psy9598 552 -----PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 626 (1915)
Q Consensus 552 -----~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~f 626 (1915)
....+. ..+.+..+.... ....|+..+..|.+..+....-......... .. .-.+... ..|..+..
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~----~~~~ill~T~~G~~~r~~~~eip~~gR~a~G--v~-~i~L~~~-d~vv~~~~ 173 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSV----DETHILLFTKKGRVARFSVREVPPSTPGARG--VQ-GIKLEKN-DETSGLRI 173 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECC----SSCEEEEEETTSEEEEEEGGGSCBCCTTCCC--EE-CCCCCTT-CCEEEEEE
T ss_pred hcCCeEEEecC-CCCEEEEEEEeC----CCCEEEEEECCCEEEEEEhhhCCCcCCCCCC--EE-EEccCCC-CEEEEEEE
Confidence 111222 223455554443 2367888888998888765432211110000 00 0112222 55666555
Q ss_pred CCCCcEEEEEeCCCeEEEEEecCCC----CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEE--EEcc
Q psy9598 627 SPGGLFLATGSGDHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI--WYYK 693 (1915)
Q Consensus 627 spdg~~Lasgs~Dg~I~IwDl~~~~----~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~I--WDl~ 693 (1915)
..++..|+..+..|.++...+.... ....+..+ ...+.+..+........++..+.+|.+.. ++..
T Consensus 174 ~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 174 WNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp ESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred eCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 5556688889999999998874221 11122223 23445555544334456777778888777 7654
No 453
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=63.78 E-value=6.6 Score=35.98 Aligned_cols=52 Identities=15% Similarity=0.367 Sum_probs=38.1
Q ss_pred CCCCCCCeEEEEE--cCeeEEEEEeecCCCCCCCceeeEEEeCC-CCCCCcCCCCCCCC
Q psy9598 1279 REWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWDN-NERENLSPWDLEPP 1334 (1915)
Q Consensus 1279 ~~~~~g~rf~~~~--~~~~~~G~i~~~~~~~~s~w~~~~v~wd~-~~~~~~spw~~~~~ 1334 (1915)
+.|++|+.|..+| |+.||.++|.++.. .. ..+.|.+-. |..+.|..=+|-|+
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~--~~--~~~~V~fvDYGN~e~V~~~~Lr~l 70 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHS--SG--MTAVVKFIDYGNYEEVLLSNIKPI 70 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECT--TS--SEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeC--CC--CEEEEEEEcCCCeEEEeHHHeEEC
Confidence 4799999999999 66799999998853 11 457888875 66666654455444
No 454
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=63.12 E-value=5.3 Score=37.57 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=39.8
Q ss_pred cCCCCCCCeEEEEE--cCeeEEEEEeecCCCCCCCceeeEEEeCC-CCCCCcCCCCCCCC
Q psy9598 1278 AREWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWDN-NERENLSPWDLEPP 1334 (1915)
Q Consensus 1278 ~~~~~~g~rf~~~~--~~~~~~G~i~~~~~~~~s~w~~~~v~wd~-~~~~~~spw~~~~~ 1334 (1915)
...|++||.|..+| |+.||.++|.++.+- . ..+.|.+.. |..+.|..=+|-|+
T Consensus 8 ~~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~--~--~~~~V~fiDYGN~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDGCIYPATIASIDFK--R--ETCVVVYTGYGNREEQNLSDLLSP 63 (88)
T ss_dssp -CCCCSSCEEEEECTTTCCEEEEEEEEEETT--T--TEEEEEETTTCCEEEEEGGGCBCC
T ss_pred cCCCCCCCEEEEEECCCCCEEEEEEEEecCC--C--CEEEEEEecCCCEEEEcHHHcccC
Confidence 46899999999999 567999999998641 1 467899875 66676665566665
No 455
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.85 E-value=69 Score=44.90 Aligned_cols=39 Identities=8% Similarity=0.189 Sum_probs=32.4
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEee
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK 761 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~ 761 (1915)
..+.+++...+..+|++-+. |++++||++.+++++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~-D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSL-DYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBT-TCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeC-CCEEEEEECCCCCeEEeec
Confidence 34555667788899999888 9999999999999988864
No 456
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=62.12 E-value=5.9 Score=34.92 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=38.7
Q ss_pred cCCCCCCCeEEEEE--cCeeEEEEEeecCCCCCCCceeeEEEeCC-CCCCCcCCCCCCCC
Q psy9598 1278 AREWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWDN-NERENLSPWDLEPP 1334 (1915)
Q Consensus 1278 ~~~~~~g~rf~~~~--~~~~~~G~i~~~~~~~~s~w~~~~v~wd~-~~~~~~spw~~~~~ 1334 (1915)
...|++||.|..+| |+.||.++|.++.. .. ..+.|.+.. |..+.|+.=+|-|+
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~--~~--~~~~V~fvdYGn~e~V~~~~Lrpl 61 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDE--EN--GTAAITFAGYGNAEVTPLLNLKPV 61 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEET--TT--TEEEEEETTTTEEEEEEGGGEECC
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcC--CC--CEEEEEEEecCCEEEEeHHHcEeC
Confidence 35899999999999 55699999999874 11 257888875 56666655455554
No 457
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=60.56 E-value=2.6e+02 Score=32.87 Aligned_cols=252 Identities=12% Similarity=0.019 Sum_probs=125.6
Q ss_pred CEEEEEeCCCcEEEEECCCC-------ceEEEee-cCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccce
Q psy9598 531 ILLAAGTVDKTIRIWNLQTL-------APISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT 602 (1915)
Q Consensus 531 ~~LaSgs~DgtIrVWDl~tg-------~~~~~l~-~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~ 602 (1915)
.++++.+.+|.|+--.+.+. .-+..+. ...+.+..+..+.. ...|+.-+..|.+.......-......
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t----~d~ll~fT~~Gr~y~~~~~~lp~~~r~ 79 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCST----HDLILFFTTQGRVYRAKAYDLPEASRT 79 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEET----TSEEEEEETTSEEEEEEGGGSCBCCSS
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCC----CCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 35677778888875543221 1111111 12233444444332 256666677776654432211100000
Q ss_pred eccCccccccccCCCCCceEEE-EECC--CCcEEEEEeCCCeEEEEEecCCCC----CceeEEeccCCCCeeEEEEcCCC
Q psy9598 603 VFHEPVMFNERIRPGNAHILCS-SFSP--GGLFLATGSGDHHVRVYKMDGVDS----PLGILEVEEHSDKVDSIQWSHSH 675 (1915)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~V~~l-~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~----~~~i~~l~~h~~~V~sl~fspdg 675 (1915)
....+....-.+... ..|.++ .+.. +..++++.+.+|.|+-..+..... ......+.. .+.+..+......
T Consensus 80 ~~G~~i~~~l~l~~~-e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~ 157 (327)
T 3uc1_A 80 ARGQHVANLLAFQPE-ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAG 157 (327)
T ss_dssp SCCEEHHHHTTCCTT-CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTT
T ss_pred CCCEEHHHccCCCCC-CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCC
Confidence 001111111112222 445444 4442 567899999999999988753221 112223333 3445555555556
Q ss_pred CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC-
Q psy9598 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG- 754 (1915)
Q Consensus 676 ~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg- 754 (1915)
..|+..+..|.+..+.....+.. .+.....+.. ... ......|.++.....+.+|+.++. .|.++...+...
T Consensus 158 d~ill~T~~G~~~rf~~~~~eip----~~gr~a~Gv~-~i~-L~~~d~Vv~~~~~~~~~~ll~~T~-~G~~Krt~l~e~~ 230 (327)
T 3uc1_A 158 DDLLLVSANGQSIRFSATDEALR----PMGRATSGVQ-GMR-FNIDDRLLSLNVVREGTYLLVATS-GGYAKRTAIEEYP 230 (327)
T ss_dssp CEEEEEETTSEEEEEECCTTTSC----CCCTTSBCEE-SSC-CCTTCCEEEEEECCTTCEEEEEET-TSEEEEEEGGGSC
T ss_pred CEEEEEECCCeEEEEECcccccC----cCCcCCCCee-eec-CCCCCEEEEEEEECCCCEEEEEeC-CCcEEEEEHHHcc
Confidence 67888889999887766511100 0000001110 011 123445666666666678888887 899988875321
Q ss_pred ------ceEEEee--CCCCCeEEEEEccCCCCEEEEEecCceEEEEECCC
Q psy9598 755 ------DLVQVLK--GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 755 ------~~i~~l~--gH~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
.-+..+. .-.+.+..+.... +...|+..+.+|.+..+.+..
T Consensus 231 ~~~R~~~G~~~~~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 231 VQGRGGKGVLTVMYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp BCCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred ccCcCCCcEEEEEecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehhh
Confidence 2222222 2133455544443 455677778888888887754
No 458
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=63.77 E-value=1.9 Score=39.64 Aligned_cols=51 Identities=6% Similarity=0.167 Sum_probs=40.5
Q ss_pred CCCCCCCeEEEEE-cCeeEEEEEeecCCCCCCCceeeEEEeCCCCCCCcCCCCCCCC
Q psy9598 1279 REWNVGDRFCSMI-DDAWWWGTIEGKPSPTKSPFLGYKILWDNNERENLSPWDLEPP 1334 (1915)
Q Consensus 1279 ~~~~~g~rf~~~~-~~~~~~G~i~~~~~~~~s~w~~~~v~wd~~~~~~~spw~~~~~ 1334 (1915)
..|++||+|-.+| |+.||-++|+++.. + ..|.|.++.+..+.|.+=.|-|+
T Consensus 5 ~~~kvGd~clAkwsDg~wY~A~I~~v~~--~---~~y~V~F~DGn~E~V~~s~LrPl 56 (81)
T 2ldm_A 5 SEFQINEQVLASWSDSRFYPAKVTAVNK--D---GTYTVKFYDGVVQTVKHIHVKAF 56 (81)
Confidence 4799999999999 55799999999863 2 26899998777777776666666
No 459
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=57.99 E-value=3.4e+02 Score=33.47 Aligned_cols=69 Identities=9% Similarity=-0.088 Sum_probs=37.9
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCCc-----------eeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q psy9598 620 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPL-----------GILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTAL 688 (1915)
Q Consensus 620 ~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~~-----------~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~ 688 (1915)
.|..++.. ..+.++-..+|.|..|-.......- ..... -....|..|+.. ..+.++-..+|.|.
T Consensus 205 ~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~-~~~~~v~~Ia~G--~~hs~alt~~G~v~ 279 (473)
T 3of7_A 205 NIVQLAPG--KDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRP-FGLRHVKYIASG--ENHCFALTKDNKLV 279 (473)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEE-CSCCSEEEEEEC--SSEEEEEETTSCEE
T ss_pred CEEEEEec--CCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCcee-cCCcceEEEecC--CCeEEEEecCCCEE
Confidence 36555543 4466666789999999753211100 00000 011356666543 34556667899999
Q ss_pred EEEcc
Q psy9598 689 IWYYK 693 (1915)
Q Consensus 689 IWDl~ 693 (1915)
.|-..
T Consensus 280 ~wG~n 284 (473)
T 3of7_A 280 SWGLN 284 (473)
T ss_dssp EEEEC
T ss_pred EeCCC
Confidence 99654
No 460
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=57.37 E-value=3.1e+02 Score=32.80 Aligned_cols=200 Identities=12% Similarity=-0.008 Sum_probs=111.1
Q ss_pred cCCCCEEEEEECCCcEEEEECCC---------CcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE---CCC---
Q psy9598 485 DKLGEVIVTGADDLLIKLWRARD---------GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN---LQT--- 549 (1915)
Q Consensus 485 spdg~~LaTGs~Dg~I~IWd~~t---------g~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWD---l~t--- 549 (1915)
-++..++++.+.+|.|+--.+.+ |.....++ ....+..+........|+..+..|.+.-+. +..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778999999999999865432 22333444 345566666666666677677778765544 321
Q ss_pred ---CceEEE---eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEE
Q psy9598 550 ---LAPISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 623 (1915)
Q Consensus 550 ---g~~~~~---l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 623 (1915)
|.++.. +. ....|.++...... ....+|+.++..|.++-..+..-..... ... ....+.. ...+..
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~-~~~~~ll~~T~~G~vKrt~l~e~~~~~~----~G~-~ai~L~~-~d~lv~ 154 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREY-ADNRYVFMATRNGTVKKTPLSEFAFRLA----RGK-IAINLDE-GDALVG 154 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCC-CTTCEEEEEETTSEEEEEEGGGGCSCCT----TCE-ESSCCCT-TCCEEE
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccC-CCCcEEEEEeCCCeEEEeEHHHhhcccC----Cce-EEEEeCC-CCEEEE
Confidence 222111 22 23345554433211 1346899999999999987654332110 000 0111222 344555
Q ss_pred EEECCCCcEEEEEeCCCeEEEEEecCC------CCCceeEEeccCCCCeeEEEEcC------------------------
Q psy9598 624 SSFSPGGLFLATGSGDHHVRVYKMDGV------DSPLGILEVEEHSDKVDSIQWSH------------------------ 673 (1915)
Q Consensus 624 l~fspdg~~Lasgs~Dg~I~IwDl~~~------~~~~~i~~l~~h~~~V~sl~fsp------------------------ 673 (1915)
+........|+..+.+|.+..|....- ..+.....+. ....|.++...+
T Consensus 155 v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~ 233 (370)
T 3l6v_A 155 VALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGA 233 (370)
T ss_dssp EEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------
T ss_pred EEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccc
Confidence 555555567888889999888876421 1122222222 234455554433
Q ss_pred -----------CCCEEEEEeCCCcEEEEEccC
Q psy9598 674 -----------SHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 674 -----------dg~~L~sgs~DG~I~IWDl~~ 694 (1915)
.+..|++.+..|..+...+..
T Consensus 234 ~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 234 EPAVIDVADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp -------------CEEEEEETTSEEEEEEGGG
T ss_pred cccccccccccCCceEEEeeCCCCEEEEEHHH
Confidence 345788888889888877653
No 461
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=55.93 E-value=3e+02 Score=32.21 Aligned_cols=251 Identities=10% Similarity=0.036 Sum_probs=124.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC----ceEEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCcccccee
Q psy9598 528 NRNILLAAGTVDKTIRIWNLQTL----APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 603 (1915)
Q Consensus 528 pdg~~LaSgs~DgtIrVWDl~tg----~~~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~ 603 (1915)
++..++++.+.+|.|+--.+... .....+.. .+.+..+..+. ..+.|+..+..|.+..+....-.......
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~----t~d~ll~fT~~Gr~~~~~~~elp~~~r~a 77 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMN----TKDVLLLFTNKGNYLYCPVHELPDIRWKD 77 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEE----TTSEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEEC----CCCEEEEEECCCEEEEEEHHHCcCCCCCC
Confidence 45667888889998886654311 11111222 23344444443 23677777888876655543211111101
Q ss_pred ccCccccccccCCCCCceEEE-EECC--CCcEEEEEeCCCeEEEEEecCCCC-----CceeEEeccCCCCeeEEEEcCCC
Q psy9598 604 FHEPVMFNERIRPGNAHILCS-SFSP--GGLFLATGSGDHHVRVYKMDGVDS-----PLGILEVEEHSDKVDSIQWSHSH 675 (1915)
Q Consensus 604 ~~~~~~~~~~~~~~~~~V~~l-~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~-----~~~i~~l~~h~~~V~sl~fspdg 675 (1915)
...+....-.+... ..|.++ .+.. ++.+|+..+.+|.++-..+..... ......+... +.+..+......
T Consensus 78 ~G~~i~~~i~L~~~-e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~ 155 (323)
T 1wp5_A 78 LGQHIANIIPIDRD-EEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGM 155 (323)
T ss_dssp CCEEGGGTSCCCTT-CCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSC
T ss_pred CCcChhhccCCCCC-CEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCC
Confidence 11111111112222 345544 4432 256788999999999998742211 1222223332 555555555556
Q ss_pred CEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCC-
Q psy9598 676 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFN- 753 (1915)
Q Consensus 676 ~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~-~L~t~s~~Dg~I~vwD~~t- 753 (1915)
..|+..+.+|.+..+....-.. +.....+.. .... .....|.++..-.++. .|++.+. .|..+..++..
T Consensus 156 ~~i~l~T~~G~~irf~~~ev~~------~gR~a~GV~-~i~L-~~~d~Vv~~~~~~~~~~~ll~vt~-~G~gKr~~~~e~ 226 (323)
T 1wp5_A 156 NELFLVTHNGYALWFDESEVSI------VGVRAAGVK-GMNL-KEGDYIVSGQLITSKDESIVVATQ-RGAVKKMKLTEF 226 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSCB------CCSSCCCEE-CCCC-CTTCCEEEEEEECCTTCEEEEEET-TSEEEEEEGGGS
T ss_pred CEEEEEeCCCcEEEEEHHHCcc------cCCCCcCEE-EEEe-CCCCEEEEEEEEcCCCcEEEEEEC-CCceEEEEHHHc
Confidence 6788888999988887653210 000001111 1111 1234455554333444 6777776 88888877643
Q ss_pred ------CceEEEee---CCCCCeEEE-EEccCCCCEEEEEecCceEEEEECCC
Q psy9598 754 ------GDLVQVLK---GHTNEVFVL-ESHPFDSRVLLSAGHDGLIIIWDILS 796 (1915)
Q Consensus 754 ------g~~i~~l~---gH~~~V~sl-~~sp~dg~~LaSgs~DG~I~IWdl~s 796 (1915)
++-+..+. .....+.++ .+. +...++..+..|.+....+..
T Consensus 227 ~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~--~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 227 EKATRAKRGVVILRELKANPHRISGFVVAQ--DSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCCCTTSCCEECSCCCSSSCCCEEEEEEEC--TTCEEEEEETTSCEEEEEGGG
T ss_pred cccCCCCCCEECeeecCCCCceEEEEEEeC--CCCeEEEEeCCCeEEEEEhhh
Confidence 12222222 222244433 333 345566677778777666654
No 462
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=55.20 E-value=4.9e+02 Score=34.47 Aligned_cols=152 Identities=9% Similarity=-0.001 Sum_probs=77.2
Q ss_pred CCcEEEEEEcCC-CCEEEEEECCCcEEEEECCCCcEEEEEeCC-------CCCEEEEEEeCC-CCEEEEEeCCCc----E
Q psy9598 476 LSAVFCVLFDKL-GEVIVTGADDLLIKLWRARDGKLLATLRGC-------SGEISDIAIDNR-NILLAAGTVDKT----I 542 (1915)
Q Consensus 476 ~~~V~~vafspd-g~~LaTGs~Dg~I~IWd~~tg~~~~~l~gH-------~~~I~~Lafspd-g~~LaSgs~Dgt----I 542 (1915)
.+.|.+|+|+|. ...+++++..+.|...+ ..|+.-..+..+ ...|.+|+++|. ...|+.+..... .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999985 45667777777765554 344443334332 236999999984 234444432211 2
Q ss_pred EEE-ECCCCceEEEeecC-------C--CCeEEEEeccCccCCCcEEEEEeCCCeEEEEeccc-CccccceeccCccccc
Q psy9598 543 RIW-NLQTLAPISVLVGH-------Q--GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-DIDISKTVFHEPVMFN 611 (1915)
Q Consensus 543 rVW-Dl~tg~~~~~l~~h-------~--~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~-~~~~~~~~~~~~~~~~ 611 (1915)
.|| ....|+.-..+... . ..+..|+++|.. ...++.+...+. ||-... +...... ...+..
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~---~~~v~~g~~~~g--l~~S~DgG~TW~~~-~~~~~~-- 164 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFN---SNEVWMGTRTEG--IWKSSDRAKTWTNV-TSIPDA-- 164 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTE---EEEEEEECSSSC--EEEESSTTSSCEEE-TTSCCC--
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCC---CCEEEEEeccCC--EEEECCCCcccCCC-ccCccc--
Confidence 333 33334433322210 1 135678888743 356666664443 333222 2221111 110100
Q ss_pred cccCCCCCceEEEEECCC-CcEEEEEeCC
Q psy9598 612 ERIRPGNAHILCSSFSPG-GLFLATGSGD 639 (1915)
Q Consensus 612 ~~~~~~~~~V~~l~fspd-g~~Lasgs~D 639 (1915)
......+.++.++|. +..|+++..+
T Consensus 165 ---~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 165 ---FTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp ---CSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred ---cCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 011145788999884 4466666654
No 463
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=53.85 E-value=3.6e+02 Score=32.46 Aligned_cols=302 Identities=11% Similarity=0.033 Sum_probs=139.0
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-Cc---------eE-EEeec-CCCCeEEEEeccCccCCCcEEEEEeCCC
Q psy9598 519 GEISDIAIDNRNILLAAGTVDKTIRIWNLQT-LA---------PI-SVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDG 586 (1915)
Q Consensus 519 ~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t-g~---------~~-~~l~~-h~~~V~sl~fsp~~~~d~~~L~sgs~Dg 586 (1915)
..|..|+... .+.+.-..||.|..|-... |+ .. ..+.. ....|..|+... ...++....++
T Consensus 16 ~~v~~ia~G~--~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~-----~ht~al~~~gg 88 (406)
T 4d9s_A 16 RKVLIISAGA--SHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA-----DHTVAYSQSGM 88 (406)
T ss_dssp CCEEEEEECS--SEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS-----SEEEEEETTTT
T ss_pred cceEEEecCC--CeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCc-----ceEEEEECCCC
Confidence 4565555443 3455556788888886543 11 11 11111 123566666543 23444444446
Q ss_pred eEEEEecccCccccceecc---CccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCC-------cee
Q psy9598 587 CIGFWKYKLDIDISKTVFH---EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP-------LGI 656 (1915)
Q Consensus 587 tI~iWDl~~~~~~~~~~~~---~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~-------~~i 656 (1915)
.|..|-......+..-... .|... .. .....|..++. ...+.++-..+|.|+.|-....... ...
T Consensus 89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v-~~--l~~~~i~~ia~--G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~ 163 (406)
T 4d9s_A 89 EVYSWGWGDFGRLGHGNSSDLFTPLPI-KA--LHGIRIKQIAC--GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV 163 (406)
T ss_dssp EEEEEECCGGGTTCSSSCCCEEEEEEC-GG--GTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEE
T ss_pred EEEEEcCCCCcCCCCCCCCccccceEe-cc--cCCCCEEEEEE--ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCccc
Confidence 9999965432221110000 00000 00 01124555554 3445666678999999975321110 001
Q ss_pred -EEeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccccCCCCccccccccccccEEEEEECCCCC
Q psy9598 657 -LEVEEH-SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 734 (1915)
Q Consensus 657 -~~l~~h-~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~ 734 (1915)
..+... ...|..|+.. ..+.+.-..+|.|..|-......+ .....................|..|+... .
T Consensus 164 p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~Gql----G~g~~~~~~~p~~v~~~~~~~i~~va~G~--~ 235 (406)
T 4d9s_A 164 PQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNL----GLGDRTDRLVPERVTSTGGEKMSMVACGW--R 235 (406)
T ss_dssp EEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTT----CSSSSCCEEEEEECCCSTTCCEEEEEECS--S
T ss_pred ceEecccCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCC----CCCCCCCcCccEEecccCCceEEEEEECC--C
Confidence 111111 2246666543 345666678999999954321100 00000000000000011123455555433 2
Q ss_pred EEEEEEecCCeEEEEECCCC-ce----------EEEeeC-CCCCeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc-
Q psy9598 735 WVITAINFNFQIKIWDAFNG-DL----------VQVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG- 801 (1915)
Q Consensus 735 ~L~t~s~~Dg~I~vwD~~tg-~~----------i~~l~g-H~~~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~- 801 (1915)
+.++-.. +|.|+.|-.... ++ ...+.. ....|..|+.. ..+.+.-..||.|+.|=....-..+
T Consensus 236 ht~~l~~-~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G---~~hs~alt~~G~v~~wG~n~~GqLG~ 311 (406)
T 4d9s_A 236 HTISVSY-SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG---WRHTMALTSDGKLYGWGWNKFGQVGV 311 (406)
T ss_dssp EEEEEET-TCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred cEEEEcC-CCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec---CCEEEEEcCCCeEEEeeCCCCCCCCC
Confidence 3333334 889999975431 11 111111 12246666553 3555666789999999765422100
Q ss_pred ----ceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 802 ----YKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 802 ----~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
.......+.......|..++. -..+.++-+.+|.|+.|.....
T Consensus 312 g~~~~~~~p~~v~~~~~~~v~~va~--G~~hs~alt~~G~v~~wG~n~~ 358 (406)
T 4d9s_A 312 GNNLDQCSPVQVRFPDDQKVVQVSC--GWRHTLAVTERNNVFAWGRGTN 358 (406)
T ss_dssp SSSSCEEEEEEECCGGGCCEEEEEE--CSSEEEEEETTSCEEEEECCTT
T ss_pred CCCCCCccCEEEeccCCCcEEEEEe--CCCeEEEEeCCCCEEEecCCCC
Confidence 011111111112234555543 3456666678899999997653
No 464
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=53.68 E-value=3e+02 Score=31.44 Aligned_cols=206 Identities=11% Similarity=-0.045 Sum_probs=110.9
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEE---ecCCCCCceeEEeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEEccC
Q psy9598 619 AHILCSSFSPGGLFLATGSGDHHVRVYK---MDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 619 ~~V~~l~fspdg~~Lasgs~Dg~I~IwD---l~~~~~~~~i~~l~~h~~~V~sl~fsp-dg~~L~sgs~DG~I~IWDl~~ 694 (1915)
..+..+........|+.-+..|.++--. +..... ..+ +. ....|.++.... +..+++..+.+|.|+...+..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~-~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK-VSL--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEE-CCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcc-ccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHH
Confidence 3444444444455666777778766443 321111 112 32 345566664421 467899999999999987654
Q ss_pred CceEEeeecccccCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC---------CceEEEeeCCCC
Q psy9598 695 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN---------GDLVQVLKGHTN 765 (1915)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~t---------g~~i~~l~gH~~ 765 (1915)
.. .. .......... ....+..+........|+..+. .|.+..+.... |.....|.. ..
T Consensus 100 ~~-~~---------~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~-~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d 166 (276)
T 3no0_A 100 FE-YK---------AQGMPIIKLT-EGDEVVSIASSVDETHILLFTK-KGRVARFSVREVPPSTPGARGVQGIKLEK-ND 166 (276)
T ss_dssp TT-TC---------STTEECSCCC-TTCCEEEEEECCSSCEEEEEET-TSEEEEEEGGGSCBCCTTCCCEECCCCCT-TC
T ss_pred hh-hh---------cCCeEEEecC-CCCEEEEEEEeCCCCEEEEEEC-CCEEEEEEhhhCCCcCCCCCCEEEEccCC-CC
Confidence 32 00 0000011111 2345555555556667777777 89988887532 222222322 24
Q ss_pred CeEEEEEccCCCCEEEEEecCceEEEEECCCCcccc--ceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEE--E
Q psy9598 766 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG--YKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLV--Y 841 (1915)
Q Consensus 766 ~V~sl~~sp~dg~~LaSgs~DG~I~IWdl~s~~~~~--~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~I--w 841 (1915)
.|.++.... ++..|+.++..|.++...+..-.... -.-+..+ ...+.+..+....+...|+..+.+|.+.. +
T Consensus 167 ~vv~~~~~~-~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i---~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~ 242 (276)
T 3no0_A 167 ETSGLRIWN-GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS---GTKDTLVDLIPIKEEVELLITTKNGKAFYDKI 242 (276)
T ss_dssp CEEEEEEES-SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC---CSSSCEEEEEEESSEEEEEEEETTSCEEEEEE
T ss_pred EEEEEEEeC-CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE---cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeee
Confidence 565555544 56688899999999998875432210 0011111 12234544443334456777777788877 7
Q ss_pred eCCC
Q psy9598 842 GLGG 845 (1915)
Q Consensus 842 dl~s 845 (1915)
++..
T Consensus 243 ~~~~ 246 (276)
T 3no0_A 243 NQKD 246 (276)
T ss_dssp EGGG
T ss_pred CHHH
Confidence 7653
No 465
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=50.01 E-value=3.6e+02 Score=31.33 Aligned_cols=199 Identities=14% Similarity=0.030 Sum_probs=111.2
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcE-------EE--EEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-------
Q psy9598 486 KLGEVIVTGADDLLIKLWRARDGKL-------LA--TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT------- 549 (1915)
Q Consensus 486 pdg~~LaTGs~Dg~I~IWd~~tg~~-------~~--~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl~t------- 549 (1915)
++..++++.+.+|.|+--.+.+... +. .+..+ ..+..+........|+..+..|.++-.....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 4567889999999999887654321 11 12222 3455555555555677778888876665432
Q ss_pred --CceE---EEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 550 --LAPI---SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 550 --g~~~---~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
|.++ ..+. ....|.++...+.. ....+|+..+..|.++...+..-.... .... ....+.. ...+..+
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~-~~~~~ll~~T~~G~~kr~~l~~~~~~r----~~G~-~~i~L~~-~d~lv~~ 156 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDL-TDDAYLLLTTASGKIARFESTDFKAVK----SRGV-IVIKLND-KDFVTSA 156 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCC-CTTCEEEEEETTSEEEEEEGGGGCC--------CE-ECBCCCT-TCCEEEE
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccC-CCCCEEEEEeCCCeEEEEEHHHhhccC----CCcE-EEEecCC-CCEEEEE
Confidence 1110 0111 12334444333210 124678899999999988775432111 0000 0112222 3556655
Q ss_pred EECCCCcEEEEEeCCCeEEEEEecCC------CCCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccC
Q psy9598 625 SFSPGGLFLATGSGDHHVRVYKMDGV------DSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 625 ~fspdg~~Lasgs~Dg~I~IwDl~~~------~~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~ 694 (1915)
.....+..|+..+.+|.+..+.+..- ........+.. ...|.++....++..|++.+..|.++...+..
T Consensus 157 ~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 157 EIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 55555567888899999999987431 11222223332 44566666555666788889999998887754
No 466
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=46.98 E-value=4.1e+02 Score=31.08 Aligned_cols=200 Identities=13% Similarity=-0.009 Sum_probs=106.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCC----cEEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC---CC------Cce
Q psy9598 486 KLGEVIVTGADDLLIKLWRARDG----KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL---QT------LAP 552 (1915)
Q Consensus 486 pdg~~LaTGs~Dg~I~IWd~~tg----~~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl---~t------g~~ 552 (1915)
|+..++++.+.+|.|+--.+.+. .....+..+ ..+..+........|+..+..|.+.-... .. |.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 45667888999999987765421 111122322 34444444445556666677787554443 21 222
Q ss_pred EEE---eecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCC
Q psy9598 553 ISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 629 (1915)
Q Consensus 553 ~~~---l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd 629 (1915)
+.. +. ....|.++...+.. .+..+|+.++.+|.++-..+..-..... ... .....+... ..+..+.....
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~-~~~~~ll~~T~~G~iKrt~l~e~~~~~r---~~G-~~ai~l~e~-d~lv~~~~~~~ 154 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDF-ELNGYFLFVTRNGMVKKTELKHYKAQRY---SKP-LTGINLKND-DQVVDVHLTDG 154 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCT-TSSCEEEEEETTSEEEEEEGGGGCCSCC---SSC-EECSCCCTT-CCEEEEEEECS
T ss_pred hhhccCCC-CCCEEEEEEEeccc-CCCceEEEEeCCCeEEEeEHHHhhhccc---cCc-eEEEEeCCC-CEEEEEEEeCC
Confidence 111 11 12345544332211 1246799999999999987754322110 000 001112222 45555555555
Q ss_pred CcEEEEEeCCCeEEEEEecCC------CCCceeEEeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEEccC
Q psy9598 630 GLFLATGSGDHHVRVYKMDGV------DSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKC 694 (1915)
Q Consensus 630 g~~Lasgs~Dg~I~IwDl~~~------~~~~~i~~l~~h~~~V~sl~fspdg~-~L~sgs~DG~I~IWDl~~ 694 (1915)
...|+..+.+|.+..+....- ..+.....+. ....|.++.....+. .|++.+..|..+..++..
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 667888889999988887421 1122222232 234566665444444 788888888888776653
No 467
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=42.71 E-value=4.5e+02 Score=30.38 Aligned_cols=198 Identities=12% Similarity=0.039 Sum_probs=105.3
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEE---------EEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC---CC----
Q psy9598 486 KLGEVIVTGADDLLIKLWRARDGKLLA---------TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL---QT---- 549 (1915)
Q Consensus 486 pdg~~LaTGs~Dg~I~IWd~~tg~~~~---------~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrVWDl---~t---- 549 (1915)
|+..++++.+.+|.|+--.+.+..... .+..+ ..+..+........|+..+..|.+.-... ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678889999999887776543221 12222 33444444444556666677787554443 22
Q ss_pred --CceEE---EeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEE
Q psy9598 550 --LAPIS---VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 624 (1915)
Q Consensus 550 --g~~~~---~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 624 (1915)
|.++. .+. ....|.++...+.. .+..+|+.++.+|.++-..+..-...... . .....+..+ ..+..+
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~-~~~~~ll~~T~~G~~Krt~l~e~~~~~r~----G-~~~i~l~~~-d~lv~~ 151 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEF-EEGVKVFMATANGTVKKTVLTEFNRLRTA----G-KVAIKLVDG-DELIGV 151 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCC-CTTCEEEEEETTSEEEEEEGGGGTTCCTT----C-EESSCCCTT-CCEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccC-CCCcEEEEEeCCCeEEEEEHHHhhccccC----C-eEEEEECCC-CEEEEE
Confidence 22211 122 22345555432211 13467999999999998876533211110 0 001112223 455555
Q ss_pred EECCCCcEEEEEeCCCeEEEEEecCCC------CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q psy9598 625 SFSPGGLFLATGSGDHHVRVYKMDGVD------SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 693 (1915)
Q Consensus 625 ~fspdg~~Lasgs~Dg~I~IwDl~~~~------~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~ 693 (1915)
....+...|+..+.+|.+..+...... .+.....+. ....|.++....++..|++.+..|.++-.++.
T Consensus 152 ~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 152 DLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 555555578888899998888874211 111222232 23456666555556678888999998887664
No 468
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=41.76 E-value=22 Score=32.64 Aligned_cols=52 Identities=15% Similarity=0.361 Sum_probs=37.6
Q ss_pred CCCCCCCeEEEEE--cCeeEEEEEeecCCCCCCCceeeEEEeCC-CCCCCcCCCCCCCC
Q psy9598 1279 REWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWDN-NERENLSPWDLEPP 1334 (1915)
Q Consensus 1279 ~~~~~g~rf~~~~--~~~~~~G~i~~~~~~~~s~w~~~~v~wd~-~~~~~~spw~~~~~ 1334 (1915)
..|++|+.+...| |+.||.++|+++.. + =..+.|.+-. +..+.|..=+|-|+
T Consensus 8 ~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~--~--~~~~~V~fiDYGN~e~V~~~~Lr~l 62 (78)
T 2d9t_A 8 KVWKPGDECFALYWEDNKFYRAEVEALHS--S--GMTAVVKFTDYGNYEEVLLSNIKPV 62 (78)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEEEECS--S--SSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred cCCCcCCEEEEEECCCCCEEEEEEEEEeC--C--CCEEEEEEEcCCCeEEEcHHHeEeC
Confidence 4799999999999 56799999998853 1 1467888864 55555544455444
No 469
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=38.06 E-value=53 Score=28.91 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=29.3
Q ss_pred CCCCCCCeEEEEEcCe-eEEEEEeecCCCCCCCceeeEEEeCCC
Q psy9598 1279 REWNVGDRFCSMIDDA-WWWGTIEGKPSPTKSPFLGYKILWDNN 1321 (1915)
Q Consensus 1279 ~~~~~g~rf~~~~~~~-~~~G~i~~~~~~~~s~w~~~~v~wd~~ 1321 (1915)
.+|++|+.+-+++.|+ -|.|||+... =+++.|++++.
T Consensus 14 ~~~~~geDVL~rw~DG~fYLGtIVd~~------~~~ClV~FeD~ 51 (69)
T 2xk0_A 14 VTYALQEDVFIKCNDGRFYLGTIIDQT------SDQYLIRFDDQ 51 (69)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEEC------SSCEEEEETTC
T ss_pred cccccCCeEEEEecCCCEEEEEEEecC------CceEEEEecCC
Confidence 6899999999999776 7799998654 35667787754
No 470
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=37.74 E-value=43 Score=46.98 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=32.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceEEEee
Q psy9598 520 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV 557 (1915)
Q Consensus 520 ~I~~Lafspdg~~LaSgs~DgtIrVWDl~tg~~~~~l~ 557 (1915)
.|.+++..++..+|++-+.|+++|||++.++.++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45667778888999999999999999999999887654
No 471
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Probab=35.78 E-value=10 Score=47.86 Aligned_cols=71 Identities=14% Similarity=-0.029 Sum_probs=50.4
Q ss_pred ccceeecccCCCCCcCCCCcccC-CCCCCCCCCCcccccCCCCCCC-----------CCcccc-cccCCCCCceeeeccc
Q psy9598 872 FEPTYDEVTNLPPHLMPPPFLVD-LNGTPYPPEVQRLVPGRENADD-----------TELLPD-ITTNDDGHVEIVEGSE 938 (1915)
Q Consensus 872 ~~~v~D~~t~~~p~~~~~pfl~~-~~G~~ypp~~Q~lv~GR~~s~~-----------~~L~~~-~~~~~d~~~~~ieg~e 938 (1915)
+++|+|++.... .|..+||... .+|.+| |||.+|+ ..|... ..+..+ +.+++...|
T Consensus 104 l~~H~D~vp~~~-~w~~~Pf~~~~~~g~l~---------GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~-i~~~~~~~E 172 (492)
T 3khx_A 104 ILCHVDVVPAGD-GWDSNPFEPVVTEDAII---------ARGTLDDKGPTIAAYYAIKILEDMNVDWKKR-IHMIIGTDE 172 (492)
T ss_dssp EEEECCCCCCCS-CCSSCTTSCEECSSEEE---------STTTTTTHHHHHHHHHHHHHHHHTTCCCSSE-EEEEEECCT
T ss_pred EEEeccCCCCCC-CcccCCCceEEECCEEE---------ecCCccCcHHHHHHHHHHHHHHHcCCCCCCC-EEEEEECCc
Confidence 467899886633 6888898765 788888 9999997 112211 122223 778899999
Q ss_pred ccCCCchhhcccccc
Q psy9598 939 RNGERPVEVEGQRHY 953 (1915)
Q Consensus 939 e~gs~~~~~~~~~~~ 953 (1915)
|.|+.|...+++.+.
T Consensus 173 E~g~~g~~~~~~~~~ 187 (492)
T 3khx_A 173 ESDWKCTDRYFKTEE 187 (492)
T ss_dssp TCCCCTTSHHHHHSC
T ss_pred cCCCcCHHHHHHhCc
Confidence 999999877777664
No 472
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=35.31 E-value=9.2e+02 Score=31.82 Aligned_cols=158 Identities=12% Similarity=0.042 Sum_probs=75.1
Q ss_pred CCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceEEEeecC-------CCCeEEEEeccCccCCCcEEEEEeCCCe--
Q psy9598 518 SGEISDIAIDNR-NILLAAGTVDKTIRIWNLQTLAPISVLVGH-------QGIITGVNFCPLEVNGFNYLASTSTDGC-- 587 (1915)
Q Consensus 518 ~~~I~~Lafspd-g~~LaSgs~DgtIrVWDl~tg~~~~~l~~h-------~~~V~sl~fsp~~~~d~~~L~sgs~Dgt-- 587 (1915)
.+.|.+|+++|. ...+++++..+.|...+ ..|..-..+..+ ...|.+|++.|.. ...++.+.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~---~~~i~~~~g~~~~~ 89 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNN---PDRLYLAQGRYVGD 89 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTE---EEEEEEEECSCTTS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCC---CCEEEEEeCccCCC
Confidence 468999999985 34566677667665554 234433333322 2469999998842 244444432211
Q ss_pred --EEEEec-ccCccccceeccCccccccccCCCCCceEEEEECCC-CcEEEEEeCCCeEEEEEe-cCCCCCceeEEec--
Q psy9598 588 --IGFWKY-KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKM-DGVDSPLGILEVE-- 660 (1915)
Q Consensus 588 --I~iWDl-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspd-g~~Lasgs~Dg~I~IwDl-~~~~~~~~i~~l~-- 660 (1915)
..||-. +.+........ +.... ........+.+++++|. ...++++...+. ||-. +...+...+..+.
T Consensus 90 ~~~~v~~S~DgG~TW~~~~~--~~~~~-~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~ 164 (789)
T 1sqj_A 90 EWAAFYVSEDRGQSFTIYES--PFPMG-ANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDA 164 (789)
T ss_dssp SCCEEEEESSTTSEEEEEEC--SSCCC-TTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCC
T ss_pred cccEEEEECCCCCcceeccC--CcccC-ccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccc
Confidence 233322 22322111111 10000 00011123456777774 345666653433 3332 2233333222111
Q ss_pred -cCCCCeeEEEEcCC-CCEEEEEeCC
Q psy9598 661 -EHSDKVDSIQWSHS-HLRFVSGSRD 684 (1915)
Q Consensus 661 -~h~~~V~sl~fspd-g~~L~sgs~D 684 (1915)
.....+..|.++|. +..++++..+
T Consensus 165 ~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 165 FTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred cCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 11245788889874 4466666654
No 473
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=34.02 E-value=9.2e+02 Score=31.46 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=32.4
Q ss_pred CCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceEEEeecC-------CCCeEEEEeccCc
Q psy9598 519 GEISDIAIDNRN-ILLAAGTVDKTIRIWNLQTLAPISVLVGH-------QGIITGVNFCPLE 572 (1915)
Q Consensus 519 ~~I~~Lafspdg-~~LaSgs~DgtIrVWDl~tg~~~~~l~~h-------~~~V~sl~fsp~~ 572 (1915)
+.|..|+++|.+ ..|+++...+.|..++- .|..-..+..+ ...|.+|++.|..
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~ 83 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVD 83 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSS
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCC
Confidence 379999999863 45555665566655542 23333333322 2358999999853
No 474
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=31.93 E-value=40 Score=31.87 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=39.3
Q ss_pred CCCCCCCeEEEEE--cCeeEEEEEeecCCCCCCCceeeEEEeC-CCCCCCcCCCCCCCC
Q psy9598 1279 REWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWD-NNERENLSPWDLEPP 1334 (1915)
Q Consensus 1279 ~~~~~g~rf~~~~--~~~~~~G~i~~~~~~~~s~w~~~~v~wd-~~~~~~~spw~~~~~ 1334 (1915)
..|.+|+-+...| |+.||.++|+++.+ + ..+.|.+- =|..+.|+.=+|-++
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~~--~---~~~~V~fvDyGn~e~v~~~~lr~l 79 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTLE--N---GNLDLYFVDFGDNGDCPLKDLRAL 79 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECT--T---SCEEEEETTTCCEEEECGGGCEEC
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECC--C---CeEEEEEEcCCCeEEEEHHHhhhc
Confidence 3699999999999 77899999999853 2 24677775 477777777777665
No 475
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=31.80 E-value=58 Score=32.79 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=41.5
Q ss_pred CcEEEEEeCCCCCCCcEEEehHhHH----HHHcCCCCCCCeEEEEEc--C----eeEEEEEeecCCCCCCCceeeEEE--
Q psy9598 1250 NEFFNIKYHDMPDVIDFFVLRQIYE----TAIAREWNVGDRFCSMID--D----AWWWGTIEGKPSPTKSPFLGYKIL-- 1317 (1915)
Q Consensus 1250 ~~~f~v~y~~~~~~~~f~v~~~~y~----~~~~~~~~~g~rf~~~~~--~----~~~~G~i~~~~~~~~s~w~~~~v~-- 1317 (1915)
..++.|.|..... ++-.|+.+... .+....+++||.+.+... + +||.|+|..+.. ..|.|.
T Consensus 27 ~d~~~V~f~n~w~-~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg------~f~~V~y~ 99 (128)
T 3h8z_A 27 EDSVTIFFENNWQ-SERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKG------DFYVIEYA 99 (128)
T ss_dssp SSEEEEEETTCTT-CCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEET------TEEEEEET
T ss_pred CCcEEEEEccccC-cceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEeeC------CEEEEEEc
Confidence 3458888864322 34555544332 123357999999999885 3 799999998743 377888
Q ss_pred -eCCCCCCCcC
Q psy9598 1318 -WDNNERENLS 1327 (1915)
Q Consensus 1318 -wd~~~~~~~s 1327 (1915)
||+.-.|-|.
T Consensus 100 ~~~~~~~EiV~ 110 (128)
T 3h8z_A 100 ACDATYNEIVT 110 (128)
T ss_dssp TC----CEEEC
T ss_pred CCCCCcceEEe
Confidence 5554444443
No 476
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=30.23 E-value=17 Score=39.67 Aligned_cols=70 Identities=21% Similarity=0.150 Sum_probs=44.5
Q ss_pred ccceeecccCCCCCcCCCCcccC--CCCCCCCCCCcccccCCCCCCC-----------CCccccc-ccCCCCCceeeecc
Q psy9598 872 FEPTYDEVTNLPPHLMPPPFLVD--LNGTPYPPEVQRLVPGRENADD-----------TELLPDI-TTNDDGHVEIVEGS 937 (1915)
Q Consensus 872 ~~~v~D~~t~~~p~~~~~pfl~~--~~G~~ypp~~Q~lv~GR~~s~~-----------~~L~~~~-~~~~d~~~~~ieg~ 937 (1915)
+++|+|++......|..+||... .+|.+| |||.+|+ ..|.... .+..+ +.++....
T Consensus 77 l~aH~DtVp~~~~~w~~~pf~~~~~~~g~l~---------GrGa~D~K~g~a~~l~a~~~l~~~~~~~~~~-v~~~~~~~ 146 (198)
T 1q7l_A 77 LNSHTDVVPVFKEHWSHDPFEAFKDSEGYIY---------ARGAQDMKCVSIQYLEAVRRLKVEGHRFPRT-IHMTFVPD 146 (198)
T ss_dssp EEEECCBCCCCGGGCSSCTTTCCBCTTSEEE---------CTTTTTTHHHHHHHHHHHHHHHHTTCCCSSC-EEEEEESC
T ss_pred EEeeecccCCCcccCccCCCeeeEccCCEEE---------eCcchhchHHHHHHHHHHHHHHHcCCCCCCC-EEEEEEcc
Confidence 35688877554345766777544 266666 9999997 1222211 13334 77888889
Q ss_pred cccC-CCchhhcccc
Q psy9598 938 ERNG-ERPVEVEGQR 951 (1915)
Q Consensus 938 ee~g-s~~~~~~~~~ 951 (1915)
||.| ..|...+++.
T Consensus 147 EE~g~~~Ga~~~~~~ 161 (198)
T 1q7l_A 147 EEVGGHQGMELFVQR 161 (198)
T ss_dssp GGGTSTTTHHHHTTS
T ss_pred cccCccccHHHHHHh
Confidence 9987 5888766654
No 477
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=29.16 E-value=34 Score=31.22 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=29.1
Q ss_pred CCCCCeEEEEE---cCeeEEEEEeecCCCCCCCceeeEEEe-CCCCCCCcC
Q psy9598 1281 WNVGDRFCSMI---DDAWWWGTIEGKPSPTKSPFLGYKILW-DNNERENLS 1327 (1915)
Q Consensus 1281 ~~~g~rf~~~~---~~~~~~G~i~~~~~~~~s~w~~~~v~w-d~~~~~~~s 1327 (1915)
=.+|||+.+.= +..-..|.|+.+---...| =|.||| |+++..-++
T Consensus 6 A~vGDrlvv~g~~vg~~~R~GeIvEV~g~dG~P--PY~VRw~ddGHe~lv~ 54 (83)
T 2a7y_A 6 AKVGDYLVVKGTTTERHDQHAEIIEVRSADGSP--PYVVRWLVNGHETTVY 54 (83)
T ss_dssp CCTTEEEEESCTTTSCCEEEEEEEECSCSSSCS--CEEEEETTTTEEEEEC
T ss_pred ccCCCEEEEecCcCCCCCcEEEEEEEECCCCCC--CEEEEecCCCcEEEEe
Confidence 46799876642 3358999999984411111 288999 777655555
No 478
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=27.23 E-value=8.7e+02 Score=29.02 Aligned_cols=268 Identities=9% Similarity=-0.113 Sum_probs=121.4
Q ss_pred CCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceeccCccccccccCCCCCceEEEEECCCCcEEEEEeCCC
Q psy9598 561 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH 640 (1915)
Q Consensus 561 ~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg 640 (1915)
..|..|+... ...+.-..||.|..|-......+..-..................|..++.. ..+.++-..+|
T Consensus 75 ~~v~~va~G~------~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G--~~hs~al~~~G 146 (423)
T 3mvd_K 75 PDAVDISAGG------MHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG--DSHSACLLEDG 146 (423)
T ss_dssp SSEEEEEECS------SEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CCceEEeeCC------CeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcC--cCeEEEEeCCC
Confidence 3466666543 566667789999999665432221111000000000000112345555543 34555667889
Q ss_pred eEEEEEe--cCCC-------CCceeEEeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEccCCceEEeeecccc-----
Q psy9598 641 HVRVYKM--DGVD-------SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT----- 706 (1915)
Q Consensus 641 ~I~IwDl--~~~~-------~~~~i~~l~~h~~~V~sl~fspdg~~L~sgs~DG~I~IWDl~~~~~~~~~~~~~~----- 706 (1915)
.|+.|-. .... ..............|..|+.. ..+.+.-..+|.|..|-....-.+-.......
T Consensus 147 ~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~ 224 (423)
T 3mvd_K 147 RVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGR 224 (423)
T ss_dssp CEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCST
T ss_pred eEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccc
Confidence 9999974 2111 000111111123356666643 34566667899999995432210000000000
Q ss_pred --cCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC-c----------eEEEeeCCCCCeEEEEEc
Q psy9598 707 --CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG-D----------LVQVLKGHTNEVFVLESH 773 (1915)
Q Consensus 707 --~~~~~~~~~~~~~~~~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg-~----------~i~~l~gH~~~V~sl~~s 773 (1915)
.................|..|+.... ..++....+|.|+.|-.... + ...-.......|..|+..
T Consensus 225 ~~~~~~~~p~~v~~~~~~~v~~i~~g~~--~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G 302 (423)
T 3mvd_K 225 RGKRDLLRPTQLIITRAKPFEAIWATNY--CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG 302 (423)
T ss_dssp TTTTTTSSCEEECCTTCCCEEEEEEETT--EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC
T ss_pred cccccccCCeEEeecCCccEEEEEECCc--EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc
Confidence 00000000001112234555544322 22222123888888864321 0 111111113356666654
Q ss_pred cCCCCEEEEEecCceEEEEECCCCcccc------ceeeeeeecCCCCcceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy9598 774 PFDSRVLLSAGHDGLIIIWDILSSKQRG------YKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 846 (1915)
Q Consensus 774 p~dg~~LaSgs~DG~I~IWdl~s~~~~~------~~~~~~~~~~~~~~~V~~vafSpdg~~Lasg~~dG~I~Iwdl~s~ 846 (1915)
. .+.+.-..||.|+.|-....-..+ .......+.... ..|..++.. ..+.++.+.+|.|+.|.....
T Consensus 303 ~---~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~-~~v~~ia~G--~~hs~alt~~G~v~~wG~n~~ 375 (423)
T 3mvd_K 303 Q---HHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLT-EKIVSVGCG--EVCSYAVTIDGKLYSWGSGVN 375 (423)
T ss_dssp S---SEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCC-SCEEEEEEE--TTEEEEEETTSCEEEEECCTT
T ss_pred c---CeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCC-CCEEEEEcC--CCeEEEEcCCCCEEEECCCCC
Confidence 3 556666789999999764321100 011111111111 246555544 345555578899999997754
No 479
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=25.82 E-value=73 Score=41.55 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=32.4
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEEeC
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG 516 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg~~~~~l~g 516 (1915)
..|.|+.+. ..+|+|-+.|+++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 457777665 77999999999999999999999988654
No 480
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=25.57 E-value=1.4e+02 Score=38.25 Aligned_cols=59 Identities=19% Similarity=0.181 Sum_probs=43.2
Q ss_pred cEEEEEEcCCCCEEEEEECC------------CcEEEEECCCCcEEEEEeCCC-CCEEEEEEeCCCCEEEEE
Q psy9598 478 AVFCVLFDKLGEVIVTGADD------------LLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILLAAG 536 (1915)
Q Consensus 478 ~V~~vafspdg~~LaTGs~D------------g~I~IWd~~tg~~~~~l~gH~-~~I~~Lafspdg~~LaSg 536 (1915)
..--|+|++.|.++++-..+ ..+.+.+..++++...+.++. ++++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 44668999999866653222 235666777888887777664 579999999999887765
No 481
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=25.15 E-value=9.4e+02 Score=28.71 Aligned_cols=200 Identities=9% Similarity=-0.030 Sum_probs=99.9
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCC-c-----------EEEEEeCCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q psy9598 477 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDG-K-----------LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRI 544 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~Dg~I~IWd~~tg-~-----------~~~~l~gH~~~I~~Lafspdg~~LaSgs~DgtIrV 544 (1915)
..|..|+.. +...+.-..||.|..|-.... + ..-..-.....|..|+... .+.+.-..||.|..
T Consensus 75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~--~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD--SHSACLLEDGRVFA 150 (423)
T ss_dssp SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS--SEEEEEETTSCEEE
T ss_pred CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc--CeEEEEeCCCeEEE
Confidence 457666665 556666778999999965331 1 0000111224576666544 35555678999999
Q ss_pred EEC--CC-Cce---------EEEeecCCCCeEEEEeccCccCCCcEEEEEeCCCeEEEEecccCccccceec--------
Q psy9598 545 WNL--QT-LAP---------ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF-------- 604 (1915)
Q Consensus 545 WDl--~t-g~~---------~~~l~~h~~~V~sl~fsp~~~~d~~~L~sgs~DgtI~iWDl~~~~~~~~~~~-------- 604 (1915)
|-. .. +++ ..........|..|+... ...+.-..+|.|..|-......+.....
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~------~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~ 224 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA------DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGR 224 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS------SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCST
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC------CeEEEEecCCeEEEeeCCcCCccCCCcccccccccc
Confidence 985 32 211 111111223566666543 4556667889999996544322211100
Q ss_pred ------cCccccccccCCCCCceEEEEECCCCcEEEEEeCCCeEEEEEecCCCCC--------ceeEEeccCCCCeeEEE
Q psy9598 605 ------HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP--------LGILEVEEHSDKVDSIQ 670 (1915)
Q Consensus 605 ------~~~~~~~~~~~~~~~~V~~l~fspdg~~Lasgs~Dg~I~IwDl~~~~~~--------~~i~~l~~h~~~V~sl~ 670 (1915)
..|... .......|..++.... ..++.-..+|.|..|-....... ............|..|+
T Consensus 225 ~~~~~~~~p~~v---~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia 300 (423)
T 3mvd_K 225 RGKRDLLRPTQL---IITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIA 300 (423)
T ss_dssp TTTTTTSSCEEE---CCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEE
T ss_pred cccccccCCeEE---eecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEE
Confidence 001000 0111233444444322 22333357888998876321110 00111111134566665
Q ss_pred EcCCCCEEEEEeCCCcEEEEEc
Q psy9598 671 WSHSHLRFVSGSRDGTALIWYY 692 (1915)
Q Consensus 671 fspdg~~L~sgs~DG~I~IWDl 692 (1915)
.. ..+.+.-..||.|..|=.
T Consensus 301 ~G--~~ht~alt~~G~v~~wG~ 320 (423)
T 3mvd_K 301 GG--QHHTVILTTDLKCSVVGR 320 (423)
T ss_dssp EC--SSEEEEEETTCCEEEEEC
T ss_pred cc--cCeEEEEeCCCcEEEEEC
Confidence 43 335556678999999954
No 482
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=24.92 E-value=9e+02 Score=30.74 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=44.0
Q ss_pred ccEEEEEECCCCCEEEEEEec-----------CCeEEEEECCCCceEEEeeCCC-CCeEEEEEccCCCCEEEEE
Q psy9598 722 IKVTMVAWDASDRWVITAINF-----------NFQIKIWDAFNGDLVQVLKGHT-NEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~-----------Dg~I~vwD~~tg~~i~~l~gH~-~~V~sl~~sp~dg~~LaSg 783 (1915)
...-.|+|++.|.++++.... ...+.+.+..++++...+.++. ..++.++|+| |++.|++.
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp-Dg~tlfvn 548 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC-CCCEEEEE
Confidence 345679999999977766431 1346667777888887777664 5899999999 77666544
No 483
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=24.88 E-value=1.1e+03 Score=29.72 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=44.9
Q ss_pred cccEEEEEECCCCCEEEEEEec-----------CCeEEEEECCCCceEEEeeCC-CCCeEEEEEccCCCCEEEEE
Q psy9598 721 KIKVTMVAWDASDRWVITAINF-----------NFQIKIWDAFNGDLVQVLKGH-TNEVFVLESHPFDSRVLLSA 783 (1915)
Q Consensus 721 ~~~V~~va~spdg~~L~t~s~~-----------Dg~I~vwD~~tg~~i~~l~gH-~~~V~sl~~sp~dg~~LaSg 783 (1915)
-.....|+|+++|.+.++.... ...|..++..++++...+.+. ...++.++|+| |++.|+++
T Consensus 475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~ 548 (592)
T 4a9v_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEE
Confidence 3556789999999888755321 126777788788877777654 35789999999 77766655
No 484
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=22.72 E-value=1.9e+02 Score=36.81 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=45.5
Q ss_pred CcEEEEEEcCCCCEEEEEEC------------CCcEEEEECCCCcEEEEEeCC-CCCEEEEEEeCCCCEEEEEe
Q psy9598 477 SAVFCVLFDKLGEVIVTGAD------------DLLIKLWRARDGKLLATLRGC-SGEISDIAIDNRNILLAAGT 537 (1915)
Q Consensus 477 ~~V~~vafspdg~~LaTGs~------------Dg~I~IWd~~tg~~~~~l~gH-~~~I~~Lafspdg~~LaSgs 537 (1915)
++...|+|+++|.+.++... ...|..++..+|++...+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 56778999999988773221 125777777788877777654 35799999999999887763
No 485
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.14 E-value=3.1e+02 Score=26.55 Aligned_cols=49 Identities=6% Similarity=-0.143 Sum_probs=21.0
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCcccccCCCceeecCCCCeeeec
Q psy9598 819 DGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRP 868 (1915)
Q Consensus 819 ~vafSpdg~~Lasg~~dG~I~Iwdl~s~~~~~~l~~~~~F~~d~~~Lv~~ 868 (1915)
.+.+..+|++++.. .++.+.+|...+..........+.+..||...+.+
T Consensus 53 ~l~l~~dGNLVl~~-~~~~~~vW~S~t~~~~~~~~~~l~Lq~dGNlvly~ 101 (111)
T 3mez_A 53 TLRLNNRGQLEIHS-ANSNTPVWVYPRSVNTVRGNYAATLGPDQHVTIYG 101 (111)
T ss_dssp EEEECTTSCEEEEC-SSCSSCSEEESSSCCCCSSCCEEEECTTSCEEEEC
T ss_pred EEEEcCCCcEEEEe-CCCCEEEEEeccccCCCCcCEEEEECCCCeEEEec
Confidence 34556666655543 23333456443211111112234455555555543
No 486
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.95 E-value=2.8e+02 Score=36.19 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=30.5
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEeeC
Q psy9598 722 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 762 (1915)
Q Consensus 722 ~~V~~va~spdg~~L~t~s~~Dg~I~vwD~~tg~~i~~l~g 762 (1915)
..|.++.+ +..+|++-+- |+++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~-Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQ-NCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEET-TCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEc-CCeEEEEEcCCCceEEeecc
Confidence 34666555 3779999888 99999999999999887654
No 487
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.32 E-value=79 Score=29.31 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCCCCCCeEEEEEcC--eeEEEEEeecCC
Q psy9598 1279 REWNVGDRFCSMIDD--AWWWGTIEGKPS 1305 (1915)
Q Consensus 1279 ~~~~~g~rf~~~~~~--~~~~G~i~~~~~ 1305 (1915)
-.|.+||-+...|.+ +||.|+|..+.+
T Consensus 20 ~~~k~g~~vaak~~d~n~WyRakV~~v~~ 48 (85)
T 2eqk_A 20 VKWENDMHCAVKIQDKNQWRRGQIIRMVT 48 (85)
T ss_dssp CCCCSSCEEEEECSSSCCEEEEEEEEECS
T ss_pred cCccCCCEEEEEeCCCCeEEEEEEEEecC
Confidence 479999999999954 699999998765
Done!