BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy960
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96KJ9|COX42_HUMAN Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Homo
sapiens GN=COX4I2 PE=1 SV=2
Length = 171
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 8 IFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
+FP K TL++E + + LQ+M+D++ NP+ G AS+WDYEK WKK
Sbjct: 127 VFPPKPITLTDERKAQQLQRMLDMKVNPVQGLASRWDYEKKQWKK 171
>sp|Q91W29|COX42_MOUSE Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Mus
musculus GN=Cox4i2 PE=2 SV=1
Length = 172
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 35/45 (77%)
Query: 8 IFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
+FP+K TL+EE + + LQ+++D++ NPI G A+ WDYEK +WKK
Sbjct: 128 VFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLAAHWDYEKKEWKK 172
>sp|Q91Y94|COX42_RAT Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Rattus
norvegicus GN=Cox4i2 PE=2 SV=1
Length = 172
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 8 IFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
+FP+K TL+EE + + LQ+++D++ NPI G ++ WDYEK +WKK
Sbjct: 128 VFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLSAHWDYEKKEWKK 172
>sp|P80971|COX42_THUOB Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Thunnus
obesus PE=1 SV=2
Length = 176
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 8 IFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWK 51
++P + T +E + + L++M+D+R NPI G ++KWDYEK WK
Sbjct: 133 VYPPRPRTFDDEWKAKQLKRMLDMRVNPIEGFSAKWDYEKGQWK 176
>sp|O46580|COX41_HYLAG Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Hylobates agilis GN=COX4I1 PE=3 SV=1
Length = 144
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 8 IFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
++ +T +E + ++M+D++ NPI G ASKWDYEKN+WKK
Sbjct: 100 VYGPLPQTFDKEWVGKQTKRMLDMKVNPIQGLASKWDYEKNEWKK 144
>sp|P13073|COX41_HUMAN Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Homo
sapiens GN=COX4I1 PE=1 SV=1
Length = 169
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 8 IFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
++ ++ +E + ++M+D++ NPI G ASKWDYEKN+WKK
Sbjct: 125 VYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK 169
>sp|O46581|COX41_THEGE Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Theropithecus gelada GN=COX4I1 PE=3 SV=1
Length = 144
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 8 IFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
++ +T +E ++M+D++ NPI G ASKWDYEKN+WKK
Sbjct: 100 VYGPLPQTFDKEWVAMQTKRMLDMKVNPIQGLASKWDYEKNEWKK 144
>sp|O46579|COX41_PONPY Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Pongo pygmaeus GN=COX4I1 PE=3 SV=1
Length = 144
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 8 IFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
++ ++ +E + ++M+D++ NPI G ASKWDYEKN+WKK
Sbjct: 100 VYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK 144
>sp|O46577|COX41_PANTR Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Pan troglodytes GN=COX4I1 PE=3 SV=1
Length = 144
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 8 IFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
++ ++ +E + ++M+D++ NPI G ASKWDYEKN+WKK
Sbjct: 100 VYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK 144
>sp|O46578|COX41_GORGO Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Gorilla gorilla gorilla GN=COX4I1 PE=3 SV=1
Length = 144
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 8 IFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
++ ++ +E + ++M+D++ NPI G ASKWDYEKN+WKK
Sbjct: 100 VYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK 144
>sp|Q9I8U0|COX41_THUOB Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Thunnus
obesus PE=2 SV=1
Length = 169
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 6 KKIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
K ++ T E++ + LQ+M+D+R NP+ G ++ WDYE WKK
Sbjct: 123 KYVYGAVPHTFDPEYKAKELQRMLDMRINPVEGFSAHWDYENKQWKK 169
>sp|O46582|COX41_SAISC Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragments)
OS=Saimiri sciureus GN=COX4I1 PE=3 SV=2
Length = 124
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 26 QKMIDLRWNPITGTASKWDYEKNDWKK 52
++M+DL+ NPI G ASKWDYEK +WKK
Sbjct: 98 KRMLDLKMNPIDGLASKWDYEKKEWKK 124
>sp|O46585|COX41_PITPI Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Pithecia pithecia GN=COX4I1 PE=3 SV=1
Length = 144
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 26 QKMIDLRWNPITGTASKWDYEKNDWKK 52
++M+DL+ NP+ G ASKWDYEK +WKK
Sbjct: 118 KRMLDLKVNPVDGLASKWDYEKKEWKK 144
>sp|O46586|COX41_PERPO Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Perodicticus potto edwarsi GN=COX4I1 PE=3 SV=1
Length = 137
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 26 QKMIDLRWNPITGTASKWDYEKNDWKK 52
+KM+D++ NPI G A+KWDYEK +WKK
Sbjct: 111 KKMLDMKVNPIQGFAAKWDYEKQEWKK 137
>sp|O46584|COX41_AOTAZ Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Aotus azarae GN=COX4I1 PE=3 SV=1
Length = 144
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 23/27 (85%)
Query: 26 QKMIDLRWNPITGTASKWDYEKNDWKK 52
++M+DL+ NP+ G ASKWDY+K +WKK
Sbjct: 118 KRMLDLKVNPVDGLASKWDYDKKEWKK 144
>sp|P19783|COX41_MOUSE Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Mus
musculus GN=Cox4i1 PE=1 SV=2
Length = 169
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 24/27 (88%)
Query: 26 QKMIDLRWNPITGTASKWDYEKNDWKK 52
++M+D++ NPI G ++KWDY+KN+WKK
Sbjct: 143 KRMLDMKANPIQGFSAKWDYDKNEWKK 169
>sp|P00423|COX41_BOVIN Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Bos
taurus GN=COX4I1 PE=1 SV=1
Length = 169
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 15 TLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
T EE + ++M+D++ PI G ++KWDY+KN+WKK
Sbjct: 132 TFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
>sp|P10888|COX41_RAT Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Rattus
norvegicus GN=Cox4i1 PE=1 SV=1
Length = 169
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 26 QKMIDLRWNPITGTASKWDYEKNDWKK 52
++M+D++ NPI G ++KWDY KN+WKK
Sbjct: 143 KRMLDMKVNPIQGFSAKWDYNKNEWKK 169
>sp|Q9TTT8|COX41_RABIT Cytochrome c oxidase subunit 4 isoform 1, mitochondrial
OS=Oryctolagus cuniculus GN=COX4I1 PE=2 SV=1
Length = 169
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 15 TLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
T +E ++M+D++ +PI G ++KWDY KN+W+K
Sbjct: 132 TFDKEWVAMQTKRMLDMKVSPIQGFSAKWDYNKNEWRK 169
>sp|Q03772|CWC15_YEAST Pre-mRNA-splicing factor CWC15 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CWC15 PE=1 SV=1
Length = 175
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 14 ETLSEEHRQEMLQKMIDLRWNPITGTAS--------KWDYEKNDWKKGDSINSHVITKET 65
ET SE+ +++ LQ+++ + N + A + + W+KG + H +TKET
Sbjct: 83 ETRSEKDQKDSLQELLVTQKNKVEDKAELEGNEQLKGGNSSRRSWRKGTAFGRHKVTKET 142
Query: 66 NI 67
NI
Sbjct: 143 NI 144
>sp|Q9MUV0|RPOA_MESVI DNA-directed RNA polymerase subunit alpha OS=Mesostigma viride
GN=rpoA PE=3 SV=1
Length = 316
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 25 LQKMIDLRWNPITGTASKWDYEKNDWKKGDSINSHVITKETNIHARGHKIRTRHELCT 82
++K+IDL +NP+ +S++ KND+ IN ++ +E + R + R ++ T
Sbjct: 218 IKKVIDL-FNPLHHCSSEYSTNKNDFSTESKIND-ILVEELELSVRAYNCLKRAQIHT 273
>sp|O34621|YCDB_BACSU Uncharacterized protein YcdB OS=Bacillus subtilis (strain 168)
GN=ycdB PE=4 SV=1
Length = 472
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 1 MEEKVKKIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKKGDSINSHV 60
+E + I PE E LSEE ++++++ ++ +P G S + E+ND GD +
Sbjct: 64 LESLSRDIEPESGERLSEEKLEDIMRQFVETH-HP--GALSAFVREENDRAYGDKVRFSY 120
Query: 61 ITKETNI 67
+ E +
Sbjct: 121 VQMEAGL 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,040,415
Number of Sequences: 539616
Number of extensions: 1022597
Number of successful extensions: 2809
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2784
Number of HSP's gapped (non-prelim): 31
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)