RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy960
         (83 letters)



>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 144

 Score = 74.0 bits (182), Expect = 3e-19
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 6   KKIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 52
             ++     T  EE   +  ++M+D++  PI G ++KWDY+KN+WKK
Sbjct: 98  HYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 144


>d1j7xa_ c.14.1.2 (A:) Interphotoreceptor retinoid-binding protein
           IRBP {African clawed frog (Xenopus laevis) [TaxId:
           8355]}
          Length = 302

 Score = 24.6 bits (53), Expect = 1.5
 Identities = 7/34 (20%), Positives = 10/34 (29%)

Query: 2   EEKVKKIFPEKAETLSEEHRQEMLQKMIDLRWNP 35
           +  V             E        +IDLR+N 
Sbjct: 118 DVSVIAKLAPFIVNTVWEPITITENLIIDLRYNV 151


>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
           [TaxId: 562]}
          Length = 759

 Score = 23.2 bits (50), Expect = 5.5
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 24/74 (32%)

Query: 1   MEEKVKKIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKKGDSINSHV 60
           ++  +KKIF E  +T ++         ++  R                         S V
Sbjct: 129 LDPMIKKIFTEYRKTHNQGVFDVYTPDILRCR------------------------KSGV 164

Query: 61  ITKETNIHARGHKI 74
           +T   + + RG  I
Sbjct: 165 LTGLPDAYGRGRII 178


>d1xsza2 d.129.9.1 (A:198-354) RalF, C-terminal domain {Legionella
           pneumophila [TaxId: 446]}
          Length = 157

 Score = 22.3 bits (47), Expect = 8.6
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 35  PITGTASKWDYEKNDWKKGDSINSHVITKETNIHARG 71
           P+    + +DYE  D  K       +IT E N+  + 
Sbjct: 121 PVKNFKATYDYEVGDLIKAYDNQKKLITIERNLALKA 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.127    0.385 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 323,275
Number of extensions: 12557
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 25
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)