BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9602
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R91|A Chain A, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R91|D Chain D, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R91|B Chain B, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R91|C Chain C, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|A Chain A, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|D Chain D, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|B Chain B, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|C Chain C, Crystal Structure Of Kd(P)ga From T.Tenax
Length = 286
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
V GTTG G +++ E K+ L T A V+VQ+ E + LAK+AES
Sbjct: 37 FVAGTTGLGPALSLQE-KMELTDAATSAARR---VIVQVASLNADEAIALAKYAESRGAE 92
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
AV LP +F S + Y RD+ A + P+F Y+ P
Sbjct: 93 AVASLPPYYFPRLSERQIAKYFRDLCSAV-SIPVFLYNYP 131
>pdb|1W3I|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
Length = 293
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 129 IDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES 187
ID++ VNGTTG G S++ E+ NL+A ++ Q+GG + + LAK ++
Sbjct: 34 IDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK----IIFQVGGLNLDDAIRLAKLSKD 89
Query: 188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
++ + ++ S + LV Y + + E +P P++ Y+ P T
Sbjct: 90 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPH-PVYLYNYPTAT 135
>pdb|1W37|A Chain A, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|B Chain B, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|C Chain C, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|D Chain D, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W3N|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3T|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
Length = 294
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 129 IDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES 187
ID++ VNGTTG G S++ E+ NL+A ++ Q+GG + + LAK ++
Sbjct: 35 IDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK----IIFQVGGLNLDDAIRLAKLSKD 90
Query: 188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
++ + ++ S + LV Y + + E +P P++ Y+ P T
Sbjct: 91 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPH-PVYLYNYPTAT 136
>pdb|2YDA|A Chain A, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
pdb|2YDA|B Chain B, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
Length = 294
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 129 IDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES 187
ID++ VNGTTG G S++ E+ NL+A ++ Q+GG + + LAK ++
Sbjct: 35 IDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK----IIFQVGGLNLDDAIRLAKLSKD 90
Query: 188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
++ + F+ S + LV Y + + E +P P++ ++ P T
Sbjct: 91 FDIVGIASYAPYFYPRMSEKHLVKYFKTLCEVSPH-PVYLFNYPTAT 136
>pdb|4AHP|A Chain A, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|B Chain B, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|C Chain C, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|D Chain D, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
Length = 298
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
VNG++GE + T ++K + EA ++ Q+G E +EL K+A L A
Sbjct: 50 VNGSSGENFLLNTEQKKQVFKV-AKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDA 108
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
+ + F+ P + E++ DY D+ EA + Y IP T V +
Sbjct: 109 LSAVTP-FYYPFTFEEIRDYYFDIIEAT-QNNMIIYAIPDLTGVNI 152
>pdb|4AH7|A Chain A, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|B Chain B, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|C Chain C, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|D Chain D, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AMA|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
Length = 298
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
VNG++GE + T ++K + EA ++ Q+G E +EL K+A L A
Sbjct: 50 VNGSSGENFLLNTEQKKQVFKV-AKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDA 108
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
+ + F+ P + E++ DY D+ EA + Y IP T V +
Sbjct: 109 LSAVTP-FYYPFTFEEIRDYYFDIIEAT-QNNMIIYAIPDLTGVNI 152
>pdb|4AHO|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
Length = 299
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
VNG++GE + T ++K + EA ++ Q+G E +EL K+A L A
Sbjct: 51 VNGSSGENFLLNTEQKKQVFKV-AKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDA 109
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
+ + F+ P + E++ DY D+ EA + Y IP T V +
Sbjct: 110 LSAVTP-FYYPFTFEEIRDYYFDIIEAT-QNNMIIYAIPDLTGVNI 153
>pdb|4AHQ|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
Length = 298
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
VNG++GE + T ++K + EA ++ Q+G E +EL K+A L A
Sbjct: 50 VNGSSGENFLLNTEQKKQVFKV-AKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDA 108
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
+ + F+ P + E++ DY D+ EA + Y IP T V +
Sbjct: 109 LSAVTP-FYYPFTFEEIRDYYFDIIEAT-QNNMIIYAIPDLTGVNI 152
>pdb|3LCH|A Chain A, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|B Chain B, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|C Chain C, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|D Chain D, The D-Sialic Acid Aldolase Mutant V251r
Length = 319
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE EAK ++ +G E +LA A+ A
Sbjct: 66 VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 125 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169
>pdb|3LCF|A Chain A, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|B Chain B, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|C Chain C, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|D Chain D, The D-Sialic Acid Aldolase Mutant V251i
Length = 319
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE EAK ++ +G E +LA A+ A
Sbjct: 66 VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 125 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169
>pdb|3LCL|A Chain A, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|B Chain B, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|C Chain C, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|D Chain D, The D-Sialic Acid Aldolase Mutant V251iV265I
Length = 319
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE EAK ++ +G E +LA A+ A
Sbjct: 66 VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 125 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169
>pdb|3LBC|A Chain A, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|B Chain B, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|C Chain C, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|D Chain D, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBM|A Chain A, D-Sialic Acid Aldolase
pdb|3LBM|B Chain B, D-Sialic Acid Aldolase
pdb|3LBM|C Chain C, D-Sialic Acid Aldolase
pdb|3LBM|D Chain D, D-Sialic Acid Aldolase
Length = 319
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE EAK ++ +G E +LA A+ A
Sbjct: 66 VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 125 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169
>pdb|2WO5|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2YGY|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
Length = 304
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE EAK ++ +G E +LA A+ A
Sbjct: 51 VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 109
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 110 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154
>pdb|3LCG|A Chain A, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|B Chain B, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|C Chain C, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|D Chain D, The D-Sialic Acid Aldolase Mutant V251l
Length = 319
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE EAK ++ +G E +LA A+ A
Sbjct: 66 VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 125 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169
>pdb|3LCI|A Chain A, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|B Chain B, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|C Chain C, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|D Chain D, The D-Sialic Acid Aldolase Mutant V251w
Length = 319
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE EAK ++ +G E +LA A+ A
Sbjct: 66 VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 125 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169
>pdb|2WNQ|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
Length = 304
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE EAK ++ +G E +LA A+ A
Sbjct: 51 VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 109
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 110 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154
>pdb|2WNZ|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WPB|A Chain A, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|B Chain B, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|C Chain C, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|D Chain D, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2XFW|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
Length = 304
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE EAK ++ +G E +LA A+ A
Sbjct: 51 VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 109
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 110 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154
>pdb|2WKJ|A Chain A, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
pdb|2WKJ|B Chain B, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
pdb|2WKJ|C Chain C, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
pdb|2WKJ|D Chain D, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
Length = 303
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE EAK ++ +G E +LA A+ A
Sbjct: 51 VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 109
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 110 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154
>pdb|2WNN|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
Length = 303
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE EAK ++ +G E +LA A+ A
Sbjct: 51 VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 109
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 110 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154
>pdb|3LCW|A Chain A, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|B Chain B, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|C Chain C, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|D Chain D, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCX|A Chain A, L-Kdo Aldolase
pdb|3LCX|B Chain B, L-Kdo Aldolase
pdb|3LCX|C Chain C, L-Kdo Aldolase
pdb|3LCX|D Chain D, L-Kdo Aldolase
Length = 319
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER LE EAK ++ +G E +LA A+ A
Sbjct: 66 VGGSTGEAFVQSLSERAQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRHGFDA 124
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S+E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 125 VSAVTP-FYYPFSLEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 169
>pdb|1NAL|1 Chain 1, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|2 Chain 2, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|3 Chain 3, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|4 Chain 4, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
Length = 297
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE E K ++ +G E +LA A+ A
Sbjct: 44 VGGSTGEAFVQSLSEREQVLEIVAEEGKGK-IKLIAHVGCVTTAESQQLAASAKRYGFDA 102
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 103 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 147
>pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|B Chain B, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|C Chain C, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|D Chain D, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDY|A Chain A, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|B Chain B, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|C Chain C, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|D Chain D, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
Length = 297
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE E K ++ +G E +LA A+ A
Sbjct: 44 VGGSTGEAFVQSLSEREQVLEIVAEEGKGK-IKLIAHVGCVTTAESQQLAASAKRYGFDA 102
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 103 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 147
>pdb|1HL2|A Chain A, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|B Chain B, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|C Chain C, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|D Chain D, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
Length = 297
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ LE EAK ++ +G E +LA A+ A
Sbjct: 44 VGGSTGEAFVQSLSEREQVLEIVAEEAKGK-IKLIAHVGCVSTAESQQLAASAKRYGFDA 102
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V + F+ P S E+ D+ R + ++A P+ Y+IP + V L
Sbjct: 103 VSAVTP-FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKL 147
>pdb|1F6P|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F73|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F74|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F74|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F7B|A Chain A, Crystal Structure Analysis Of N-acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-oxo-sialic Acid
pdb|1F7B|C Chain C, Crystal Structure Analysis Of N-acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-oxo-sialic Acid
pdb|1F5Z|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F6K|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
pdb|1F6K|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
Length = 293
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 129 IDQM------VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELA 182
ID+M V G+TGE ++T E+K EAK ++ Q+G +E VEL
Sbjct: 34 IDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQ-IALIAQVGSVNLKEAVELG 92
Query: 183 KHAESLNVHAVLCLPEL--FFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
K+A L CL + F+ S ++ Y D A + + Y IP T V +
Sbjct: 93 KYATELGYD---CLSAVTPFYYKFSFPEIKHY-YDTIIAETGSNMIVYSIPFLTGVNM 146
>pdb|3IRD|A Chain A, Structure Of Dihydrodipicolinate Synthase From Clostridium
Botulinum
Length = 291
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
+V GTTGE +MT ERK ++ ++ + V+ G + ++K AES+ V
Sbjct: 40 IVCGTTGEATTMTETERKETIK-FVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVD 98
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
+L + ++ + + LV + + V +A +TP+ Y++P
Sbjct: 99 GLLVITP-YYNKTTQKGLVKHFKAVSDAV-STPIIIYNVP 136
>pdb|3A5F|A Chain A, High-Resolution Structure Of Dhdps From Clostridium
Botulinum In Complex With Pyruvate
pdb|3A5F|B Chain B, High-Resolution Structure Of Dhdps From Clostridium
Botulinum In Complex With Pyruvate
Length = 291
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
+V GTTGE +MT ERK ++ ++ + V+ G + ++K AES+ V
Sbjct: 40 IVCGTTGEATTMTETERKETIK-FVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVD 98
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
+L + ++ + + LV + + V +A +TP+ Y++P
Sbjct: 99 GLLVITP-YYNKTTQKGLVKHFKAVSDAV-STPIIIYNVP 136
>pdb|2RFG|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
pdb|2RFG|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
pdb|2RFG|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
pdb|2RFG|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
Length = 297
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194
GTTGE ++T E K + A + E V+ G E V A+HA+ AVL
Sbjct: 42 GTTGESPTLTEEEHK-RVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVL 100
Query: 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
C+ + P S E L + + V +A P+ Y+IP V +K
Sbjct: 101 CVAGYYNRP-SQEGLYQHFKMVHDAI-DIPIIVYNIPPRAVVDIK 143
>pdb|2NUW|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius, Native Structure At 1.8 A Resolution
pdb|2NUW|B Chain B, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius, Native Structure At 1.8 A Resolution
pdb|2NUX|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius, Native Structure In P6522 At 2.5 A
Resolution
pdb|2NUX|B Chain B, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius, Native Structure In P6522 At 2.5 A
Resolution
pdb|2NUY|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius In Complex With Pyruvate
pdb|2NUY|B Chain B, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius In Complex With Pyruvate
Length = 288
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
VNGTTG G +++ E++ NL A TH ++ Q+G +V+EL K + +++
Sbjct: 38 FVNGTTGLGPALSKDEKRQNLNALYD--VTH--KLIFQVGSLNLNDVMELVKFSNEMDIL 93
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
V +F + L Y ++ + + L+ Y+ P
Sbjct: 94 GVSSHSPYYFPRLPEKFLAKYYEEIARISSHS-LYIYNYP 132
>pdb|2YXG|A Chain A, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|B Chain B, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|C Chain C, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|D Chain D, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
Length = 289
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194
GTTGE +++ E K +E + + V+ G C +E +EL+ AE + AVL
Sbjct: 42 GTTGESPTLSHEEHKKVIEK-VVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVL 100
Query: 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
+ + P E L + V E+ P+ Y++P T V L+
Sbjct: 101 SITPYYNKPTQ-EGLRKHFGKVAESI-NLPIVLYNVPSRTAVNLE 143
>pdb|3B4U|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
pdb|3B4U|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
Length = 294
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELA-KHAESLNVHA- 192
GTTGEG S+ + ER+ L +++ G + G + + A + AE+LN A
Sbjct: 45 GTTGEGCSVGSRERQAILSSFIAA----GIAPSRIVTGVLVDSIEDAADQSAEALNAGAR 100
Query: 193 -VLCLPELFFTPASVEDLVDYLRDVGE--AAPATPLFYYHIPMFTRVTLK 239
+L P +F S + L + V A + Y+IP T VTL
Sbjct: 101 NILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLS 150
>pdb|1XKY|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XL9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis
Length = 301
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
+V GTTGE ++T+ E K+ L + V+ G ++L K A + V
Sbjct: 51 VVGGTTGESPTLTS-EEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD 109
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
AV+ + + P S E + + + + E+ P P+ Y++P
Sbjct: 110 AVMLVAPYYNKP-SQEGMYQHFKAIAESTP-LPVMLYNVP 147
>pdb|3HIJ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
Length = 292
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
+V GTTGE ++ T+E K+ L + V+ G ++L K A + V
Sbjct: 42 VVGGTTGESPTL-TSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD 100
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
AV+ + + P S E + + + + E+ P P+ Y++P
Sbjct: 101 AVMLVAPYYNKP-SQEGMYQHFKAIAESTP-LPVMLYNVP 138
>pdb|3M5V|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
pdb|3M5V|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
pdb|3M5V|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
pdb|3M5V|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
Length = 301
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 129 IDQMVN-GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES 187
ID +V GTTGE ++T E + +E + K V+ G E V LAK A+
Sbjct: 42 IDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKE 101
Query: 188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
+L + + P + L ++ + + ++ P+ Y++P
Sbjct: 102 HGADGILSVAPYYNKPTQ-QGLYEHYKAIAQSVD-IPVLLYNVP 143
>pdb|3LER|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
pdb|3LER|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
pdb|3LER|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
pdb|3LER|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 301
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 129 IDQMVN-GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES 187
ID +V GTTGE ++T E + +E + K V+ G E V LAK A+
Sbjct: 42 IDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKE 101
Query: 188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
+L + + P + L ++ + + ++ P+ Y++P
Sbjct: 102 HGADGILSVAPYYNKPTQ-QGLYEHYKAIAQSVD-IPVLLYNVP 143
>pdb|2V8Z|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
Length = 343
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194
G+ GE + ERK + + + V++ GGT +E +EL++HA+ ++
Sbjct: 73 GSGGEFSQLGAEERK-AIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIV 131
Query: 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
+ ++ S +L+ Y V ++ P+ Y+ P T
Sbjct: 132 VI-NPYYWKVSEANLIRYFEQVADSV-TLPVMLYNFPALT 169
>pdb|3SI9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
pdb|3SI9|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
pdb|3SI9|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
pdb|3SI9|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
Length = 315
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194
GTTGE ++T E K +E + + V+ G E VELAKHAE AVL
Sbjct: 64 GTTGESPTLTHEEHKRIIELCVEQVAKR-VPVVAGAGSNSTSEAVELAKHAEKAGADAVL 122
Query: 195 CLPELFFTP 203
+ + P
Sbjct: 123 VVTPYYNRP 131
>pdb|3NEV|A Chain A, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|B Chain B, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|C Chain C, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|D Chain D, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
Length = 298
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194
G+ GE + ERK + + + V++ GGT +E +EL++HA+ ++
Sbjct: 44 GSGGEFSQLGAEERK-AIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIV 102
Query: 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
+ ++ S +L+ Y V ++ P+ Y+ P T
Sbjct: 103 VI-NPYYWKVSEANLIRYFEQVADSV-TLPVMLYNFPALT 140
>pdb|2V9D|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
Length = 343
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194
G+ GE + ERK + + + V++ GGT +E +EL++HA+ ++
Sbjct: 73 GSGGEFSQLGAEERK-AIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIV 131
Query: 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
+ ++ S +L+ Y V ++ P+ Y+ P T
Sbjct: 132 VI-NPYYWKVSEANLIRYFEQVADSV-TLPVXLYNFPALT 169
>pdb|3N2X|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
Length = 298
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194
G+ GE + ERK + + + V++ GGT +E +EL++HA+ ++
Sbjct: 44 GSGGEFSQLGAEERK-AIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIV 102
Query: 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
+ ++ S +L+ Y V ++ P+ Y+ P T
Sbjct: 103 VI-NPYYWKVSEANLIRYFEQVADSV-TLPVMLYNFPALT 140
>pdb|3DAQ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
Length = 292
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
+VNGTT E ++TT E++L L+ + + V+ G ++ ++ + A++L
Sbjct: 41 IVNGTTAESPTLTTDEKELILKTVI-DLVDKRVPVIAGTGTNDTEKSIQASIQAKALGAD 99
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
A++ + ++ + LV + + +A P+ Y++P T +T++
Sbjct: 100 AIMLITP-YYNKTNQRGLVKHFEAIADAV-KLPVVLYNVPSRTNMTIE 145
>pdb|2EHH|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|E Chain E, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
Length = 294
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
+V GTTGE ++T E + +E + A V+ GG E V L HA+ +
Sbjct: 39 LVCGTTGESPTLTFEEHEKVIEFAVKRAAGR-IKVIAGTGGNATHEAVHLTAHAKEVGAD 97
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
L + + P L ++ + V + P+ Y+IP T V +
Sbjct: 98 GALVVVPYYNKPTQ-RGLYEHFKTVAQEVD-IPIIIYNIPSRTCVEI 142
>pdb|3FLU|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
pdb|3FLU|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
pdb|3FLU|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
pdb|3FLU|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
Length = 297
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194
GTTGE +++ E +EA + V+ G E + L++ AE L
Sbjct: 49 GTTGESATLSVEEHTAVIEAVVKHVAKR-VPVIAGTGANNTVEAIALSQAAEKAGADYTL 107
Query: 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
+ + P S E + + + + EA + P+ Y++P T V++
Sbjct: 108 SVVPYYNKP-SQEGIYQHFKTIAEAT-SIPMIIYNVPGRTVVSM 149
>pdb|2PCQ|A Chain A, Crystal Structure Of Putative Dihydrodipicolinate Synthase
(Ttha0737) From Thermus Thermophilus Hb8
Length = 283
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 125 MAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAK 183
+ P++D + V G+ GEGV +T ER L A +V + +
Sbjct: 28 LEPLVDGLLVYGSNGEGVHLTPEERARGLRALRPRK-----PFLVGLXEETLPQAEGALL 82
Query: 184 HAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
A++ A+L P ++ + L+ Y + E PLF YH+P T+V L
Sbjct: 83 EAKAAGAXALLATPPRYYHGSLGAGLLRYYEALAEK---XPLFLYHVPQNTKVDL 134
>pdb|1IRF|A Chain A, Interferon Regulatory Factor-2 Dna Binding Domain, Nmr,
Minimized Average Structure
pdb|1IRG|A Chain A, Interferon Regulatory Factor-2 Dna Binding Domain, Nmr, 20
Structures
Length = 112
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 124 RMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV 166
RM P +++ +N T G+ E+K+ WM A+ HG+ V
Sbjct: 6 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAAR-HGWDV 47
>pdb|3UFB|A Chain A, Crystal Structure Of A Modification Subunit Of A Putative
Type I Restriction Enzyme From Vibrio Vulnificus Yj016
Length = 530
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 163 GFTVMVQIGGTCFQEVVELAKHAESL---NVHAVLCLPELFFTPASVEDLVDYLRDVGEA 219
G +V GT F + + E L N+H ++ LPE F P + D+ L +
Sbjct: 356 GRAAVVVPNGTLFSDGISARIKEELLKNFNLHTIVRLPEGVFAPYT--DIAGNLLFFDRS 413
Query: 220 APATPLFYYHI 230
P ++YY I
Sbjct: 414 GPTDDIWYYQI 424
>pdb|2IRF|G Chain G, Crystal Structure Of An Irf-2DNA COMPLEX.
pdb|2IRF|H Chain H, Crystal Structure Of An Irf-2DNA COMPLEX.
pdb|2IRF|I Chain I, Crystal Structure Of An Irf-2DNA COMPLEX.
pdb|2IRF|J Chain J, Crystal Structure Of An Irf-2DNA COMPLEX.
pdb|2IRF|K Chain K, Crystal Structure Of An Irf-2DNA COMPLEX.
pdb|2IRF|L Chain L, Crystal Structure Of An Irf-2DNA COMPLEX
Length = 113
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 124 RMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV 166
RM P +++ +N T G+ E+K+ WM A+ HG+ V
Sbjct: 7 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAAR-HGWDV 48
>pdb|3TUU|A Chain A, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|B Chain B, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|C Chain C, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|D Chain D, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|E Chain E, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|F Chain F, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|G Chain G, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|H Chain H, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
Length = 346
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
+V GTTGEG M+ E + L V+ G +E + + ++ +H
Sbjct: 84 IVGGTTGEGQLMSWDEHIM-LIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMH 142
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
A L + ++ S+E LV + V P P Y++P
Sbjct: 143 AALHI-NPYYGKTSLEGLVSHFESV---LPMGPTVIYNVP 178
>pdb|3DI0|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Staphylococcus Aureus
pdb|3DI0|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Staphylococcus Aureus
pdb|3DI1|A Chain A, Crystal Structure Of The Staphylococcus Aureus
Dihydrodipicolinate Synthase-pyruvate Complex
pdb|3DI1|B Chain B, Crystal Structure Of The Staphylococcus Aureus
Dihydrodipicolinate Synthase-pyruvate Complex
Length = 295
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
+VNGTT E ++TT E++ L+ + + V+ G ++ ++ + A++L
Sbjct: 42 IVNGTTAESPTLTTDEKERILKTVI-DLVDKRVPVIAGTGTNDTEKSIQASIQAKALGAD 100
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239
A++ + ++ + LV + + +A P+ Y++P T +T++
Sbjct: 101 AIMLITP-YYNKTNQRGLVKHFEAIADAV-KLPVVLYNVPSRTNMTIE 146
>pdb|1QWT|A Chain A, Auto-inhibitory Interferon Regulation Factor-3 (irf3)
Transactivation Domain
pdb|1QWT|B Chain B, Auto-inhibitory Interferon Regulation Factor-3 (irf3)
Transactivation Domain
Length = 255
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 125 MAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAK 183
+ P I ++ T G G S A E+W + VMV++ TC + +VE+A+
Sbjct: 150 LGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMAR 208
>pdb|1J2F|A Chain A, X-Ray Crystal Structure Of Irf-3 And Its Functional
Implications
pdb|1J2F|B Chain B, X-Ray Crystal Structure Of Irf-3 And Its Functional
Implications
Length = 258
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 125 MAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAK 183
+ P I ++ T G G S A E+W + VMV++ TC + +VE+A+
Sbjct: 153 LGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMAR 211
>pdb|3A77|A Chain A, The Crystal Structure Of Phosphorylated Irf-3
pdb|3A77|B Chain B, The Crystal Structure Of Phosphorylated Irf-3
pdb|3A77|C Chain C, The Crystal Structure Of Phosphorylated Irf-3
pdb|3A77|D Chain D, The Crystal Structure Of Phosphorylated Irf-3
Length = 242
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 125 MAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAK 183
+ P I ++ T G G S A E+W + VMV++ TC + +VE+A+
Sbjct: 137 LGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMAR 195
>pdb|1ZOQ|A Chain A, Irf3-Cbp Complex
pdb|1ZOQ|B Chain B, Irf3-Cbp Complex
Length = 191
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 125 MAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAK 183
+ P I ++ T G G S A E+W + VMV++ TC + +VE+A+
Sbjct: 127 LGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMAR 185
>pdb|1E6B|A Chain A, Crystal Structure Of A Zeta Class Glutathione
S-Transferase From Arabidopsis Thaliana
Length = 221
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 147 ERKLNLE---AWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP 203
E K+N+E AW+ A T GFT + ++ C KHA ++ L +LF P
Sbjct: 124 EEKINVEEKTAWVNNAITKGFTALEKLLVNC------AGKHATGDEIY----LADLFLAP 173
>pdb|4DPP|A Chain A, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana
pdb|4DPP|B Chain B, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana
pdb|4DPQ|A Chain A, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana In Complex With (S)-Lysine
pdb|4DPQ|B Chain B, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana In Complex With (S)-Lysine
Length = 360
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
+V GTTGEG M+ E + L V+ G +E + + ++ +H
Sbjct: 98 IVGGTTGEGQLMSWDEHIM-LIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMH 156
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231
A L + ++ S+E L+ + + V P Y++P
Sbjct: 157 AALHI-NPYYGKTSIEGLIAHFQSVLHMGPT---IIYNVP 192
>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+)
Synthetase From Cytophaga Hutchinsonii
Length = 634
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 176 QEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRD-VGEAA 220
+ +++ + A++ NV +LCLPEL T EDL +L D V E A
Sbjct: 25 KNILDAIEEAKNANVE-ILCLPELCITGYGCEDL--FLTDWVAETA 67
>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|3 Chain 3, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|C Chain C, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|3 Chain 3, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|3 Chain 3, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|D Chain D, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 783
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVV--ELAKHAES--LNVHAV 193
G V T E L L+ + EA+ + + T + ++ ELAK ++ L+
Sbjct: 315 GRLVEATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQGR 374
Query: 194 LCLPELFFTPASVEDLV--DYLRDVGEAAPATPLFYYHIPMFTR 235
P F PAS+EDL+ D+ +G+ P+ + + F R
Sbjct: 375 TAAPASLFPPASLEDLLQADFALVLGDPTEEAPILHLRLSEFVR 418
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,443,580
Number of Sequences: 62578
Number of extensions: 172973
Number of successful extensions: 461
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 62
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)