Query psy9602
Match_columns 239
No_of_seqs 167 out of 1224
Neff 5.0
Searched_HMMs 46136
Date Sat Aug 17 00:01:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0329 DapA Dihydrodipicolina 100.0 3.6E-34 7.9E-39 261.5 11.0 133 84-239 13-147 (299)
2 TIGR02313 HpaI-NOT-DapA 2,4-di 100.0 2.6E-33 5.7E-38 254.4 11.0 134 84-239 9-144 (294)
3 cd00952 CHBPH_aldolase Trans-o 100.0 7.5E-33 1.6E-37 253.2 10.8 129 89-239 24-152 (309)
4 cd00954 NAL N-Acetylneuraminic 100.0 1.7E-32 3.7E-37 247.5 11.5 131 87-239 14-145 (288)
5 TIGR00683 nanA N-acetylneurami 100.0 1.7E-32 3.6E-37 248.7 11.1 131 87-239 14-145 (290)
6 TIGR00674 dapA dihydrodipicoli 100.0 3.3E-32 7.3E-37 245.0 10.6 130 87-239 12-141 (285)
7 PRK04147 N-acetylneuraminate l 100.0 3.6E-32 7.9E-37 245.9 10.7 129 87-239 17-147 (293)
8 cd00408 DHDPS-like Dihydrodipi 100.0 1.1E-31 2.4E-36 239.3 11.3 133 84-239 6-140 (281)
9 PLN02417 dihydrodipicolinate s 100.0 1.3E-31 2.9E-36 241.6 10.4 131 84-239 10-142 (280)
10 PRK03170 dihydrodipicolinate s 100.0 3.4E-31 7.3E-36 238.7 11.1 130 87-239 15-144 (292)
11 cd00950 DHDPS Dihydrodipicolin 100.0 4E-31 8.7E-36 236.7 10.2 130 87-239 14-143 (284)
12 PF00701 DHDPS: Dihydrodipicol 100.0 1.3E-31 2.7E-36 240.8 6.9 130 87-239 15-144 (289)
13 TIGR03249 KdgD 5-dehydro-4-deo 100.0 7.9E-30 1.7E-34 231.2 10.9 126 87-239 19-144 (296)
14 PRK03620 5-dehydro-4-deoxygluc 100.0 1E-29 2.2E-34 231.5 11.0 129 84-239 16-146 (303)
15 cd00953 KDG_aldolase KDG (2-ke 100.0 2.8E-29 6E-34 226.4 10.6 124 89-239 15-138 (279)
16 cd00951 KDGDH 5-dehydro-4-deox 100.0 3.3E-29 7.1E-34 226.7 11.0 129 84-239 9-139 (289)
17 cd00945 Aldolase_Class_I Class 99.6 1E-15 2.2E-20 126.9 6.4 99 121-234 19-125 (201)
18 cd08205 RuBisCO_IV_RLP Ribulos 99.5 1.9E-14 4E-19 135.6 3.3 119 116-238 147-296 (367)
19 cd00377 ICL_PEPM Members of th 99.2 4.6E-10 1E-14 100.2 13.2 103 121-233 90-207 (243)
20 cd08210 RLP_RrRLP Ribulose bis 99.1 5.3E-10 1.1E-14 105.6 9.7 123 111-238 137-292 (364)
21 TIGR02320 PEP_mutase phosphoen 98.9 6.4E-09 1.4E-13 95.4 9.1 97 126-227 104-216 (285)
22 PRK07565 dihydroorotate dehydr 97.3 0.0025 5.3E-08 59.2 11.0 88 142-233 83-176 (334)
23 PRK07259 dihydroorotate dehydr 96.6 0.039 8.4E-07 50.2 12.4 68 163-231 91-166 (301)
24 cd07945 DRE_TIM_CMS Leptospira 96.5 0.059 1.3E-06 49.4 12.5 107 121-229 80-198 (280)
25 PRK05692 hydroxymethylglutaryl 96.4 0.078 1.7E-06 48.7 13.1 108 119-228 83-205 (287)
26 cd07941 DRE_TIM_LeuA3 Desulfob 96.3 0.12 2.5E-06 46.9 13.2 107 122-230 85-203 (273)
27 cd07938 DRE_TIM_HMGL 3-hydroxy 96.0 0.19 4E-06 45.9 13.1 108 120-229 78-200 (274)
28 PLN02746 hydroxymethylglutaryl 96.0 0.14 3E-06 48.7 12.6 108 119-228 125-247 (347)
29 cd04740 DHOD_1B_like Dihydroor 96.0 0.12 2.6E-06 46.7 11.7 100 127-231 33-163 (296)
30 cd04739 DHOD_like Dihydroorota 95.7 0.25 5.3E-06 46.0 13.0 86 143-232 82-173 (325)
31 PRK11320 prpB 2-methylisocitra 95.5 0.18 3.9E-06 46.9 11.0 83 134-226 121-206 (292)
32 PRK02506 dihydroorotate dehydr 95.3 0.37 8E-06 44.6 12.5 86 142-231 73-166 (310)
33 PF13714 PEP_mutase: Phosphoen 95.2 0.12 2.6E-06 46.6 8.8 100 121-231 91-200 (238)
34 cd02803 OYE_like_FMN_family Ol 95.2 0.21 4.5E-06 45.6 10.5 77 149-227 195-286 (327)
35 TIGR02317 prpB methylisocitrat 95.2 0.23 5E-06 46.0 10.8 83 134-226 116-201 (285)
36 cd02810 DHOD_DHPD_FMN Dihydroo 95.1 0.37 8E-06 43.3 11.7 88 141-231 78-171 (289)
37 cd07939 DRE_TIM_NifV Streptomy 95.1 0.59 1.3E-05 41.8 12.9 105 121-228 75-188 (259)
38 cd04722 TIM_phosphate_binding 95.0 0.24 5.2E-06 40.0 9.3 104 123-232 20-124 (200)
39 TIGR02319 CPEP_Pphonmut carbox 94.9 0.32 6.9E-06 45.3 10.8 82 134-225 120-204 (294)
40 cd07940 DRE_TIM_IPMS 2-isoprop 94.8 0.68 1.5E-05 41.6 12.5 96 131-228 90-195 (268)
41 PRK11858 aksA trans-homoaconit 94.6 0.79 1.7E-05 43.6 13.1 105 121-228 81-194 (378)
42 cd07948 DRE_TIM_HCS Saccharomy 94.6 1 2.2E-05 40.9 13.2 106 120-228 76-190 (262)
43 TIGR01037 pyrD_sub1_fam dihydr 94.3 0.93 2E-05 41.1 12.3 81 144-229 74-164 (300)
44 PRK00278 trpC indole-3-glycero 94.2 0.15 3.2E-06 46.2 6.9 64 160-230 47-119 (260)
45 cd04741 DHOD_1A_like Dihydroor 94.2 1.6 3.4E-05 40.1 13.6 86 144-232 72-167 (294)
46 cd03174 DRE_TIM_metallolyase D 94.1 0.98 2.1E-05 39.5 11.7 83 144-228 109-196 (265)
47 TIGR02660 nifV_homocitr homoci 93.9 1.5 3.2E-05 41.5 13.2 106 121-229 78-192 (365)
48 PF00682 HMGL-like: HMGL-like 93.8 0.59 1.3E-05 40.7 9.7 101 126-228 78-187 (237)
49 PLN02495 oxidoreductase, actin 93.7 0.74 1.6E-05 44.4 10.8 88 144-234 96-194 (385)
50 cd06556 ICL_KPHMT Members of t 93.6 0.65 1.4E-05 41.9 9.7 73 147-234 113-203 (240)
51 PRK07259 dihydroorotate dehydr 93.5 1.6 3.5E-05 39.7 12.3 85 138-227 135-239 (301)
52 TIGR02321 Pphn_pyruv_hyd phosp 93.5 0.98 2.1E-05 41.9 11.0 81 141-228 127-211 (290)
53 cd02940 DHPD_FMN Dihydropyrimi 93.4 1.2 2.6E-05 40.7 11.4 83 145-231 83-177 (299)
54 cd08206 RuBisCO_large_I_II_III 93.3 1.2 2.6E-05 43.4 11.7 114 113-235 146-264 (414)
55 cd07937 DRE_TIM_PC_TC_5S Pyruv 93.3 2.2 4.7E-05 38.8 12.7 55 171-228 144-198 (275)
56 PRK04208 rbcL ribulose bisopho 93.3 1.9 4.1E-05 42.7 13.1 114 108-228 169-287 (468)
57 PF13407 Peripla_BP_4: Peripla 93.1 0.4 8.7E-06 40.9 7.3 61 163-231 28-89 (257)
58 TIGR03326 rubisco_III ribulose 93.0 1.7 3.8E-05 42.3 12.3 86 113-200 158-248 (412)
59 cd00958 DhnA Class I fructose- 93.0 0.89 1.9E-05 39.7 9.4 83 121-216 149-233 (235)
60 cd02810 DHOD_DHPD_FMN Dihydroo 92.9 2.5 5.5E-05 37.9 12.6 81 144-227 146-248 (289)
61 cd04740 DHOD_1B_like Dihydroor 92.9 2.4 5.2E-05 38.3 12.4 85 138-227 132-236 (296)
62 COG0826 Collagenase and relate 92.6 0.64 1.4E-05 44.2 8.5 73 125-199 23-102 (347)
63 cd04734 OYE_like_3_FMN Old yel 92.6 1 2.2E-05 42.2 9.8 83 144-227 186-290 (343)
64 PRK12344 putative alpha-isopro 92.6 2.9 6.3E-05 41.7 13.5 102 125-229 95-208 (524)
65 cd04733 OYE_like_2_FMN Old yel 92.5 1.3 2.9E-05 41.1 10.3 82 144-227 194-297 (338)
66 TIGR02090 LEU1_arch isopropylm 92.4 2.6 5.7E-05 39.9 12.4 105 121-228 77-190 (363)
67 PRK08195 4-hyroxy-2-oxovalerat 92.4 2.5 5.4E-05 39.8 12.2 98 121-229 94-196 (337)
68 cd00958 DhnA Class I fructose- 92.3 2.1 4.5E-05 37.3 10.9 94 121-228 82-185 (235)
69 TIGR00977 LeuA_rel 2-isopropyl 92.2 2.2 4.8E-05 42.6 12.1 99 123-224 89-199 (526)
70 TIGR01037 pyrD_sub1_fam dihydr 92.0 1.5 3.3E-05 39.8 9.9 85 138-227 135-239 (300)
71 cd00452 KDPG_aldolase KDPG and 92.0 0.96 2.1E-05 38.6 8.1 61 150-227 88-148 (190)
72 PRK00915 2-isopropylmalate syn 91.9 3.5 7.7E-05 40.9 13.1 96 131-228 96-202 (513)
73 cd02933 OYE_like_FMN Old yello 91.9 0.75 1.6E-05 43.2 8.0 81 145-228 198-291 (338)
74 cd08148 RuBisCO_large Ribulose 91.8 1.8 4E-05 41.5 10.6 85 113-199 141-230 (366)
75 cd07943 DRE_TIM_HOA 4-hydroxy- 91.8 3.4 7.4E-05 37.0 11.8 97 121-228 91-191 (263)
76 PRK10550 tRNA-dihydrouridine s 91.7 1.2 2.5E-05 41.6 9.0 86 138-227 109-199 (312)
77 cd07944 DRE_TIM_HOA_like 4-hyd 91.7 5.5 0.00012 36.1 13.2 78 145-228 108-189 (266)
78 PRK08318 dihydropyrimidine deh 91.7 2.6 5.6E-05 40.3 11.6 86 143-232 81-178 (420)
79 PRK15063 isocitrate lyase; Pro 91.7 1.9 4.1E-05 42.3 10.7 94 134-233 190-317 (428)
80 PRK09389 (R)-citramalate synth 91.3 4.3 9.2E-05 40.2 12.9 104 122-228 80-192 (488)
81 cd02930 DCR_FMN 2,4-dienoyl-Co 91.1 2 4.3E-05 40.3 10.0 82 144-227 182-281 (353)
82 PRK05286 dihydroorotate dehydr 91.1 4.4 9.5E-05 38.1 12.2 109 122-233 76-222 (344)
83 CHL00040 rbcL ribulose-1,5-bis 91.1 1.2 2.7E-05 44.1 8.8 99 124-228 192-294 (475)
84 cd02931 ER_like_FMN Enoate red 91.0 1.9 4.1E-05 41.1 9.9 83 144-227 196-310 (382)
85 cd06292 PBP1_LacI_like_10 Liga 90.8 2.4 5.2E-05 36.2 9.6 77 149-230 15-91 (273)
86 PRK07226 fructose-bisphosphate 90.7 1.1 2.3E-05 40.5 7.6 85 122-219 167-253 (267)
87 PRK14041 oxaloacetate decarbox 90.2 4.1 8.8E-05 40.3 11.6 97 121-229 101-203 (467)
88 cd08213 RuBisCO_large_III Ribu 90.1 2 4.3E-05 41.9 9.3 85 113-199 145-234 (412)
89 COG2513 PrpB PEP phosphonomuta 90.1 2.7 5.8E-05 39.4 9.7 90 134-232 121-214 (289)
90 cd06312 PBP1_ABC_sugar_binding 90.0 3.8 8.2E-05 35.2 10.1 77 148-232 15-92 (271)
91 PF00016 RuBisCO_large: Ribulo 89.8 1.8 3.9E-05 40.7 8.4 84 113-197 28-116 (309)
92 cd02801 DUS_like_FMN Dihydrour 89.7 4.4 9.5E-05 34.8 10.3 79 144-227 107-188 (231)
93 TIGR01949 AroFGH_arch predicte 89.7 1.6 3.4E-05 39.1 7.7 84 122-218 163-248 (258)
94 cd02809 alpha_hydroxyacid_oxid 89.6 3.1 6.8E-05 38.1 9.7 131 78-230 38-180 (299)
95 TIGR02634 xylF D-xylose ABC tr 89.5 5.3 0.00012 35.6 11.0 82 143-232 8-89 (302)
96 cd02932 OYE_YqiM_FMN Old yello 89.5 2.9 6.4E-05 38.8 9.6 82 144-227 199-295 (336)
97 cd02801 DUS_like_FMN Dihydrour 89.4 2.2 4.9E-05 36.6 8.2 67 159-228 51-129 (231)
98 COG0042 tRNA-dihydrouridine sy 89.4 1.2 2.6E-05 41.7 7.0 100 126-227 99-203 (323)
99 cd08208 RLP_Photo Ribulose bis 89.4 2.7 5.9E-05 41.2 9.6 80 138-228 200-283 (424)
100 TIGR00736 nifR3_rel_arch TIM-b 89.2 3.9 8.5E-05 36.8 9.8 85 136-227 111-196 (231)
101 TIGR03217 4OH_2_O_val_ald 4-hy 89.1 7.1 0.00015 36.8 11.9 97 121-228 93-194 (333)
102 PRK09816 thrL thr operon leade 89.1 0.46 1E-05 28.7 2.6 19 2-20 5-23 (26)
103 cd08209 RLP_DK-MTP-1-P-enolase 88.9 2.8 6.1E-05 40.6 9.2 109 116-235 141-254 (391)
104 TIGR01108 oadA oxaloacetate de 88.8 6.1 0.00013 40.1 11.8 96 121-228 97-198 (582)
105 PRK05437 isopentenyl pyrophosp 88.6 2.7 5.8E-05 39.8 8.7 121 97-230 56-194 (352)
106 cd06322 PBP1_ABC_sugar_binding 88.6 7.7 0.00017 33.0 10.9 79 146-232 12-90 (267)
107 cd04738 DHOD_2_like Dihydrooro 88.6 10 0.00022 35.3 12.4 105 123-232 67-212 (327)
108 TIGR00737 nifR3_yhdG putative 88.5 2.1 4.6E-05 39.4 7.9 79 145-227 116-197 (319)
109 PLN02321 2-isopropylmalate syn 88.5 6.7 0.00015 40.3 12.0 91 131-223 186-285 (632)
110 cd04737 LOX_like_FMN L-Lactate 88.4 2.7 5.9E-05 40.0 8.7 88 127-220 242-331 (351)
111 PRK12858 tagatose 1,6-diphosph 88.4 5.4 0.00012 37.9 10.6 85 146-232 139-251 (340)
112 PRK05458 guanosine 5'-monophos 88.3 5.8 0.00013 37.5 10.7 113 98-230 34-148 (326)
113 cd06289 PBP1_MalI_like Ligand- 88.3 5.7 0.00012 33.5 9.9 60 163-231 29-88 (268)
114 PRK11320 prpB 2-methylisocitra 88.2 6.2 0.00014 36.7 10.7 83 142-227 60-153 (292)
115 cd06318 PBP1_ABC_sugar_binding 88.1 6.5 0.00014 33.8 10.2 77 147-231 13-89 (282)
116 TIGR02151 IPP_isom_2 isopenten 88.1 3 6.6E-05 39.0 8.7 126 96-230 48-187 (333)
117 TIGR01949 AroFGH_arch predicte 88.1 7.9 0.00017 34.6 11.0 95 120-227 95-197 (258)
118 COG2513 PrpB PEP phosphonomuta 88.0 5.8 0.00012 37.2 10.3 86 139-227 57-153 (289)
119 TIGR02708 L_lactate_ox L-lacta 88.0 1.9 4.2E-05 41.4 7.4 88 126-219 248-337 (367)
120 TIGR01769 GGGP geranylgeranylg 88.0 1.9 4.2E-05 38.1 6.9 51 176-232 11-61 (205)
121 PF01207 Dus: Dihydrouridine s 87.9 2.6 5.7E-05 38.9 8.1 91 133-227 95-188 (309)
122 PRK10415 tRNA-dihydrouridine s 87.8 2.6 5.6E-05 39.3 8.0 84 137-227 110-199 (321)
123 cd06302 PBP1_LsrB_Quorum_Sensi 87.7 7.4 0.00016 34.4 10.6 77 148-232 14-91 (298)
124 cd00959 DeoC 2-deoxyribose-5-p 87.6 4.1 8.9E-05 35.2 8.6 55 173-227 66-121 (203)
125 PRK15408 autoinducer 2-binding 87.5 5.8 0.00013 36.7 10.2 62 163-232 53-115 (336)
126 cd08207 RLP_NonPhot Ribulose b 87.5 3 6.4E-05 40.7 8.4 81 137-228 182-266 (406)
127 TIGR00510 lipA lipoate synthas 87.4 5.1 0.00011 37.4 9.7 76 142-220 187-273 (302)
128 PRK12331 oxaloacetate decarbox 87.3 8.9 0.00019 37.7 11.7 97 121-229 102-204 (448)
129 cd06556 ICL_KPHMT Members of t 87.3 5.4 0.00012 36.0 9.5 76 141-228 53-131 (240)
130 cd06557 KPHMT-like Ketopantoat 87.2 4.8 0.0001 36.8 9.2 73 141-226 53-131 (254)
131 TIGR02637 RhaS rhamnose ABC tr 87.2 7.6 0.00016 34.2 10.3 77 148-232 13-91 (302)
132 cd06317 PBP1_ABC_sugar_binding 87.2 7.4 0.00016 33.1 10.0 62 163-232 30-91 (275)
133 cd01538 PBP1_ABC_xylose_bindin 87.1 8.8 0.00019 33.6 10.6 81 144-232 10-90 (288)
134 PRK09250 fructose-bisphosphate 87.1 2 4.3E-05 41.1 6.9 75 142-219 260-339 (348)
135 cd08212 RuBisCO_large_I Ribulo 87.0 3.3 7.2E-05 40.9 8.6 97 124-228 170-271 (450)
136 PRK00311 panB 3-methyl-2-oxobu 87.0 1.6 3.6E-05 40.0 6.1 66 146-226 117-200 (264)
137 TIGR02317 prpB methylisocitrat 86.9 9 0.00019 35.5 10.9 83 142-227 55-148 (285)
138 cd00959 DeoC 2-deoxyribose-5-p 86.9 17 0.00037 31.3 12.2 109 117-228 71-180 (203)
139 cd02940 DHPD_FMN Dihydropyrimi 86.9 4.3 9.4E-05 37.1 8.8 56 138-197 146-201 (299)
140 PLN02591 tryptophan synthase 86.8 2.3 5E-05 38.6 6.9 78 133-219 163-248 (250)
141 cd06309 PBP1_YtfQ_like Peripla 86.8 8.5 0.00018 33.0 10.2 81 143-231 9-89 (273)
142 cd00377 ICL_PEPM Members of th 86.7 8 0.00017 34.6 10.2 77 140-220 49-137 (243)
143 cd04739 DHOD_like Dihydroorota 86.6 7.1 0.00015 36.4 10.2 81 141-226 143-241 (325)
144 cd04735 OYE_like_4_FMN Old yel 86.5 4.9 0.00011 37.7 9.2 84 144-227 189-289 (353)
145 cd06316 PBP1_ABC_sugar_binding 86.5 7.5 0.00016 34.0 9.8 74 150-231 16-90 (294)
146 cd06321 PBP1_ABC_sugar_binding 86.5 9.5 0.00021 32.6 10.3 77 147-231 13-91 (271)
147 PF00478 IMPDH: IMP dehydrogen 86.4 2.5 5.5E-05 40.4 7.2 81 143-230 70-157 (352)
148 TIGR00736 nifR3_rel_arch TIM-b 86.3 7.8 0.00017 34.9 9.9 85 142-231 47-143 (231)
149 TIGR03572 WbuZ glycosyl amidat 86.3 3.9 8.5E-05 35.6 7.9 51 175-227 152-202 (232)
150 cd02809 alpha_hydroxyacid_oxid 86.3 3 6.5E-05 38.2 7.4 89 125-219 190-281 (299)
151 PF01791 DeoC: DeoC/LacD famil 86.2 6.9 0.00015 34.4 9.4 102 119-227 80-198 (236)
152 cd03307 Mta_CmuA_like MtaA_Cmu 86.0 6.2 0.00013 36.2 9.4 58 174-231 169-231 (326)
153 cd04738 DHOD_2_like Dihydrooro 85.8 9.7 0.00021 35.4 10.7 87 141-227 178-285 (327)
154 PRK07565 dihydroorotate dehydr 85.7 5.6 0.00012 37.0 9.0 74 148-226 153-243 (334)
155 cd04728 ThiG Thiazole synthase 85.6 8.7 0.00019 35.3 9.9 83 126-219 142-226 (248)
156 PLN02433 uroporphyrinogen deca 85.6 9.9 0.00021 35.4 10.6 56 174-230 177-240 (345)
157 cd06324 PBP1_ABC_sugar_binding 85.5 11 0.00023 33.5 10.4 76 148-232 15-92 (305)
158 COG1879 RbsB ABC-type sugar tr 85.5 8.7 0.00019 34.5 9.9 62 165-234 67-128 (322)
159 PF13714 PEP_mutase: Phosphoen 85.5 7.2 0.00016 35.1 9.4 81 141-224 50-137 (238)
160 PRK07226 fructose-bisphosphate 85.5 16 0.00036 32.8 11.7 96 120-228 98-202 (267)
161 PRK04180 pyridoxal biosynthesi 85.5 4.3 9.4E-05 38.1 8.1 73 140-220 173-257 (293)
162 PRK05286 dihydroorotate dehydr 85.4 7 0.00015 36.7 9.6 85 142-226 188-293 (344)
163 PRK07028 bifunctional hexulose 85.4 3 6.4E-05 40.1 7.2 91 122-227 75-167 (430)
164 PRK08999 hypothetical protein; 85.3 4.8 0.00011 36.5 8.3 96 123-227 152-285 (312)
165 cd06301 PBP1_rhizopine_binding 85.3 12 0.00026 31.9 10.4 78 146-231 12-90 (272)
166 PRK11815 tRNA-dihydrouridine s 85.3 5.3 0.00011 37.4 8.7 81 143-227 116-210 (333)
167 TIGR02320 PEP_mutase phosphoen 85.3 13 0.00028 34.4 11.1 75 141-219 59-147 (285)
168 PRK07315 fructose-bisphosphate 85.3 5.3 0.00011 37.1 8.6 98 123-229 94-209 (293)
169 PRK12330 oxaloacetate decarbox 85.2 14 0.00031 36.9 12.1 100 121-229 103-207 (499)
170 cd02811 IDI-2_FMN Isopentenyl- 85.2 5.4 0.00012 37.2 8.7 126 96-231 47-187 (326)
171 cd03409 Chelatase_Class_II Cla 85.1 13 0.00029 27.5 9.4 83 131-218 2-88 (101)
172 cd01541 PBP1_AraR Ligand-bindi 85.1 10 0.00022 32.4 9.8 79 148-231 14-92 (273)
173 cd07947 DRE_TIM_Re_CS Clostrid 85.1 15 0.00032 33.8 11.3 109 120-228 79-209 (279)
174 PF00290 Trp_syntA: Tryptophan 85.0 2.6 5.5E-05 38.6 6.3 58 133-199 172-229 (259)
175 cd00578 L-fuc_L-ara-isomerases 85.0 12 0.00026 36.2 11.2 78 147-232 20-98 (452)
176 PF01487 DHquinase_I: Type I 3 84.8 7.6 0.00017 33.7 9.0 98 131-231 58-183 (224)
177 COG0134 TrpC Indole-3-glycerol 84.7 1.8 3.9E-05 39.7 5.1 64 160-230 43-115 (254)
178 cd04727 pdxS PdxS is a subunit 84.7 8.8 0.00019 35.9 9.7 64 150-220 184-248 (283)
179 PLN02424 ketopantoate hydroxym 84.7 9.5 0.00021 36.4 10.1 81 133-226 69-155 (332)
180 PRK00208 thiG thiazole synthas 84.4 11 0.00024 34.7 10.0 83 126-219 142-226 (250)
181 cd06315 PBP1_ABC_sugar_binding 84.4 15 0.00032 32.1 10.6 76 148-231 15-90 (280)
182 PRK10703 DNA-binding transcrip 84.4 8.4 0.00018 34.5 9.3 75 148-231 74-148 (341)
183 PLN02535 glycolate oxidase 84.4 8 0.00017 37.1 9.6 87 127-219 244-332 (364)
184 PRK09485 mmuM homocysteine met 84.3 24 0.00052 32.5 12.5 95 121-231 146-249 (304)
185 cd00331 IGPS Indole-3-glycerol 84.2 3 6.4E-05 36.0 6.1 61 163-229 10-79 (217)
186 PRK10653 D-ribose transporter 84.2 18 0.00039 31.7 11.2 77 148-232 41-117 (295)
187 cd06267 PBP1_LacI_sugar_bindin 84.2 13 0.00028 30.9 9.8 73 149-231 15-87 (264)
188 PRK06806 fructose-bisphosphate 84.2 5.7 0.00012 36.6 8.2 99 122-229 91-207 (281)
189 cd01539 PBP1_GGBP Periplasmic 84.2 15 0.00032 32.7 10.7 61 163-231 31-91 (303)
190 PF01180 DHO_dh: Dihydroorotat 84.2 4.5 9.7E-05 36.7 7.5 92 141-234 73-174 (295)
191 TIGR00737 nifR3_yhdG putative 84.0 7.9 0.00017 35.6 9.2 69 159-229 59-138 (319)
192 cd06323 PBP1_ribose_binding Pe 83.9 19 0.00041 30.4 10.8 80 144-231 10-89 (268)
193 cd06305 PBP1_methylthioribose_ 83.9 13 0.00029 31.5 10.0 61 163-231 29-89 (273)
194 PLN02428 lipoic acid synthase 83.9 10 0.00022 36.2 10.0 79 141-220 226-313 (349)
195 cd06313 PBP1_ABC_sugar_binding 83.8 18 0.0004 31.3 11.0 76 148-231 14-89 (272)
196 PRK12928 lipoyl synthase; Prov 83.8 10 0.00022 35.0 9.8 77 143-220 185-270 (290)
197 PLN03228 methylthioalkylmalate 83.8 14 0.00031 37.0 11.3 96 131-228 185-292 (503)
198 PRK13523 NADPH dehydrogenase N 83.7 9.5 0.00021 35.9 9.7 82 144-227 187-280 (337)
199 PLN02489 homocysteine S-methyl 83.7 28 0.0006 32.8 12.7 96 121-232 173-277 (335)
200 cd06308 PBP1_sensor_kinase_lik 83.7 14 0.0003 31.7 10.0 76 148-231 14-90 (270)
201 cd08211 RuBisCO_large_II Ribul 83.5 10 0.00022 37.5 10.0 59 138-197 196-263 (439)
202 cd06270 PBP1_GalS_like Ligand 83.5 8.6 0.00019 32.8 8.6 59 163-231 29-87 (268)
203 PRK01130 N-acetylmannosamine-6 83.4 8.5 0.00018 33.3 8.6 74 149-227 45-124 (221)
204 PF06187 DUF993: Protein of un 83.4 6.2 0.00013 38.0 8.2 121 95-229 50-185 (382)
205 cd01542 PBP1_TreR_like Ligand- 83.4 12 0.00025 31.6 9.3 73 149-231 15-87 (259)
206 PRK09282 pyruvate carboxylase 83.4 15 0.00033 37.3 11.6 97 121-229 102-204 (592)
207 cd06281 PBP1_LacI_like_5 Ligan 83.4 13 0.00028 31.8 9.7 61 163-232 29-89 (269)
208 cd02922 FCB2_FMN Flavocytochro 83.3 16 0.00036 34.6 11.1 108 74-196 34-151 (344)
209 cd06299 PBP1_LacI_like_13 Liga 83.3 11 0.00024 31.9 9.2 73 149-231 15-87 (265)
210 cd06311 PBP1_ABC_sugar_binding 83.3 14 0.0003 31.7 9.9 60 164-231 35-94 (274)
211 cd06274 PBP1_FruR Ligand bindi 83.2 13 0.00028 31.6 9.6 60 163-232 29-88 (264)
212 PF08254 Leader_Thr: Threonine 83.1 1.3 2.8E-05 26.0 2.2 17 1-18 6-22 (22)
213 TIGR03849 arch_ComA phosphosul 83.0 7.9 0.00017 35.2 8.5 86 141-232 95-194 (237)
214 cd06557 KPHMT-like Ketopantoat 83.0 3.1 6.6E-05 38.0 5.9 66 146-226 114-197 (254)
215 PRK06252 methylcobalamin:coenz 83.0 11 0.00024 34.6 9.7 57 175-231 179-240 (339)
216 PRK00311 panB 3-methyl-2-oxobu 82.7 10 0.00022 34.8 9.2 75 140-226 55-134 (264)
217 CHL00200 trpA tryptophan synth 82.7 4.2 9.1E-05 37.1 6.7 79 133-219 176-260 (263)
218 cd06285 PBP1_LacI_like_7 Ligan 82.7 13 0.00028 31.6 9.4 59 163-231 29-87 (265)
219 cd04730 NPD_like 2-Nitropropan 82.6 11 0.00023 32.5 9.0 80 148-238 144-223 (236)
220 cd04747 OYE_like_5_FMN Old yel 82.6 9.1 0.0002 36.5 9.1 83 144-228 189-286 (361)
221 PRK08318 dihydropyrimidine deh 82.6 9.7 0.00021 36.4 9.4 54 138-195 146-199 (420)
222 PRK10355 xylF D-xylose transpo 82.5 18 0.00039 33.0 10.8 78 147-232 39-116 (330)
223 cd06319 PBP1_ABC_sugar_binding 82.4 22 0.00048 30.3 10.7 80 144-231 10-89 (277)
224 cd07896 Adenylation_kDNA_ligas 82.4 5.4 0.00012 33.2 6.8 58 141-199 100-158 (174)
225 PRK05096 guanosine 5'-monophos 82.3 6.2 0.00013 37.9 7.8 81 141-230 76-159 (346)
226 TIGR00262 trpA tryptophan synt 82.3 5.1 0.00011 36.2 7.1 59 133-199 172-230 (256)
227 COG2159 Predicted metal-depend 82.2 23 0.0005 32.6 11.4 96 137-236 71-171 (293)
228 TIGR00973 leuA_bact 2-isopropy 82.1 21 0.00046 35.4 11.8 96 130-227 92-198 (494)
229 PRK02412 aroD 3-dehydroquinate 82.1 18 0.00039 32.5 10.5 65 163-231 135-206 (253)
230 PRK12581 oxaloacetate decarbox 82.0 21 0.00046 35.5 11.7 100 121-229 111-213 (468)
231 cd01540 PBP1_arabinose_binding 81.9 17 0.00037 31.3 10.0 60 163-231 29-88 (289)
232 TIGR00693 thiE thiamine-phosph 81.8 30 0.00064 29.0 11.7 49 180-228 107-158 (196)
233 PRK13585 1-(5-phosphoribosyl)- 81.6 6 0.00013 34.5 7.1 92 125-227 95-198 (241)
234 PRK14024 phosphoribosyl isomer 81.5 5.6 0.00012 35.3 6.9 83 126-214 157-240 (241)
235 TIGR03332 salvage_mtnW 2,3-dik 81.4 9.1 0.0002 37.4 8.8 60 139-200 180-243 (407)
236 cd06275 PBP1_PurR Ligand-bindi 81.3 16 0.00035 30.9 9.5 76 148-232 14-89 (269)
237 PRK06843 inosine 5-monophospha 81.3 18 0.00039 35.3 10.8 62 167-232 143-204 (404)
238 PRK14743 thrL thr operon leade 81.3 1.5 3.2E-05 26.6 2.1 17 3-20 8-24 (26)
239 PTZ00413 lipoate synthase; Pro 81.3 17 0.00036 35.6 10.4 76 143-220 275-361 (398)
240 TIGR02319 CPEP_Pphonmut carbox 81.2 18 0.00039 33.8 10.3 83 142-227 59-152 (294)
241 PRK09549 mtnW 2,3-diketo-5-met 81.2 11 0.00023 36.9 9.1 83 115-199 150-237 (407)
242 PRK11303 DNA-binding transcrip 81.1 19 0.00041 31.9 10.2 74 149-231 77-150 (328)
243 TIGR00343 pyridoxal 5'-phospha 81.1 8 0.00017 36.2 7.9 62 150-219 187-250 (287)
244 PRK08185 hypothetical protein; 81.1 11 0.00023 35.0 8.8 97 124-229 87-205 (283)
245 TIGR00126 deoC deoxyribose-pho 81.1 9.7 0.00021 33.8 8.2 64 164-227 56-122 (211)
246 PRK06552 keto-hydroxyglutarate 81.0 6.4 0.00014 34.8 7.0 60 150-226 100-159 (213)
247 PF04909 Amidohydro_2: Amidohy 80.9 11 0.00023 32.2 8.3 75 150-228 60-136 (273)
248 PF02581 TMP-TENI: Thiamine mo 80.9 3.1 6.6E-05 35.1 4.8 57 166-227 96-154 (180)
249 TIGR01464 hemE uroporphyrinoge 80.9 19 0.00042 33.2 10.5 55 173-228 177-239 (338)
250 PRK09250 fructose-bisphosphate 80.9 5 0.00011 38.4 6.7 81 149-232 112-202 (348)
251 PRK05481 lipoyl synthase; Prov 80.8 16 0.00035 33.5 9.9 81 142-224 176-265 (289)
252 PRK10605 N-ethylmaleimide redu 80.7 8.2 0.00018 36.6 8.1 81 144-228 204-298 (362)
253 TIGR02077 thr_lead_pep thr ope 80.6 2 4.3E-05 26.3 2.5 18 3-20 7-24 (26)
254 PF00218 IGPS: Indole-3-glycer 80.5 4.2 9.1E-05 37.1 5.8 64 160-230 45-117 (254)
255 COG1646 Predicted phosphate-bi 80.4 11 0.00025 34.3 8.5 51 176-230 28-78 (240)
256 TIGR02417 fruct_sucro_rep D-fr 80.3 17 0.00037 32.2 9.7 73 150-231 77-149 (327)
257 PRK08227 autoinducer 2 aldolas 80.3 8.7 0.00019 35.3 7.9 64 151-218 183-247 (264)
258 cd06300 PBP1_ABC_sugar_binding 80.2 25 0.00055 29.9 10.4 59 165-231 36-94 (272)
259 cd06298 PBP1_CcpA_like Ligand- 80.1 17 0.00037 30.7 9.2 74 148-231 14-87 (268)
260 PRK01130 N-acetylmannosamine-6 80.1 11 0.00024 32.6 8.1 72 146-227 105-178 (221)
261 cd06296 PBP1_CatR_like Ligand- 80.1 22 0.00048 30.1 9.9 59 163-231 29-87 (270)
262 cd00945 Aldolase_Class_I Class 80.0 31 0.00067 28.1 11.5 103 121-230 71-180 (201)
263 PRK06512 thiamine-phosphate py 79.9 4.5 9.7E-05 35.9 5.7 58 166-228 111-170 (221)
264 cd02922 FCB2_FMN Flavocytochro 79.7 12 0.00026 35.5 8.8 88 125-220 231-326 (344)
265 TIGR03128 RuMP_HxlA 3-hexulose 79.7 19 0.00041 30.6 9.3 86 123-221 71-157 (206)
266 cd07898 Adenylation_DNA_ligase 79.5 5.7 0.00012 34.0 6.1 60 139-199 124-183 (201)
267 cd06283 PBP1_RegR_EndR_KdgR_li 79.5 16 0.00036 30.7 8.9 59 163-231 29-87 (267)
268 PF01068 DNA_ligase_A_M: ATP d 79.5 5.1 0.00011 33.7 5.7 58 140-198 128-185 (202)
269 PRK10014 DNA-binding transcrip 79.5 22 0.00048 31.7 10.1 75 148-231 79-153 (342)
270 TIGR02708 L_lactate_ox L-lacta 79.4 9 0.00019 36.9 7.9 74 141-227 213-288 (367)
271 PLN02274 inosine-5'-monophosph 79.3 22 0.00047 35.5 10.9 93 121-227 253-356 (505)
272 TIGR00742 yjbN tRNA dihydrouri 79.3 21 0.00045 33.4 10.2 90 135-227 98-200 (318)
273 PRK10528 multifunctional acyl- 79.3 25 0.00054 29.5 9.9 88 131-226 46-146 (191)
274 cd04732 HisA HisA. Phosphorib 79.3 8.7 0.00019 33.2 7.2 92 125-227 92-195 (234)
275 PRK14040 oxaloacetate decarbox 79.2 41 0.00088 34.4 12.9 97 121-229 103-205 (593)
276 cd04730 NPD_like 2-Nitropropan 79.0 16 0.00035 31.4 8.9 58 163-227 102-161 (236)
277 COG0167 PyrD Dihydroorotate de 78.8 6.4 0.00014 37.1 6.6 85 138-226 139-245 (310)
278 cd02932 OYE_YqiM_FMN Old yello 78.6 46 0.00099 30.9 12.2 108 121-228 39-227 (336)
279 COG0119 LeuA Isopropylmalate/h 78.3 58 0.0013 31.8 13.2 107 120-228 81-197 (409)
280 PRK04302 triosephosphate isome 78.2 46 0.00099 29.0 12.2 89 125-226 82-177 (223)
281 COG0159 TrpA Tryptophan syntha 78.2 34 0.00075 31.7 11.0 67 164-230 19-102 (265)
282 cd06273 PBP1_GntR_like_1 This 78.1 21 0.00046 30.2 9.2 72 149-230 15-86 (268)
283 cd00717 URO-D Uroporphyrinogen 77.8 26 0.00056 32.2 10.3 47 173-220 174-224 (335)
284 cd00381 IMPDH IMPDH: The catal 77.7 22 0.00047 33.3 9.8 76 144-230 68-143 (325)
285 cd03332 LMO_FMN L-Lactate 2-mo 77.7 8.7 0.00019 37.1 7.3 88 127-220 274-363 (383)
286 TIGR01463 mtaA_cmuA methyltran 77.6 25 0.00055 32.3 10.2 58 174-231 178-242 (340)
287 cd00381 IMPDH IMPDH: The catal 77.5 26 0.00057 32.7 10.3 62 122-195 100-162 (325)
288 PRK14742 thrL thr operon leade 77.4 2.2 4.8E-05 26.3 2.0 16 2-18 13-28 (28)
289 PLN02757 sirohydrochlorine fer 77.3 40 0.00087 28.3 10.4 94 129-227 14-110 (154)
290 cd00331 IGPS Indole-3-glycerol 77.2 25 0.00055 30.2 9.5 88 122-226 88-176 (217)
291 PF02679 ComA: (2R)-phospho-3- 77.2 4.4 9.5E-05 37.0 4.9 86 141-232 108-206 (244)
292 TIGR03151 enACPred_II putative 77.2 10 0.00022 35.1 7.5 66 151-227 101-166 (307)
293 TIGR01036 pyrD_sub2 dihydrooro 77.1 9.7 0.00021 35.8 7.4 61 138-198 181-246 (335)
294 PRK05458 guanosine 5'-monophos 77.0 13 0.00027 35.3 8.1 42 147-196 126-168 (326)
295 cd02803 OYE_like_FMN_family Ol 76.9 20 0.00043 32.7 9.2 113 119-231 37-217 (327)
296 cd02811 IDI-2_FMN Isopentenyl- 76.9 20 0.00043 33.4 9.3 47 145-197 163-210 (326)
297 cd04722 TIM_phosphate_binding 76.8 28 0.0006 27.8 9.1 89 128-227 85-175 (200)
298 PRK12999 pyruvate carboxylase; 76.8 42 0.00091 36.9 12.9 99 121-229 633-741 (1146)
299 PRK12858 tagatose 1,6-diphosph 76.7 15 0.00033 34.9 8.6 72 141-216 222-302 (340)
300 PRK13957 indole-3-glycerol-pho 76.6 5.3 0.00012 36.4 5.3 48 177-230 62-110 (247)
301 cd06320 PBP1_allose_binding Pe 76.6 39 0.00084 28.9 10.5 76 149-232 15-92 (275)
302 cd04731 HisF The cyclase subun 76.5 19 0.00041 31.6 8.6 60 149-214 182-241 (243)
303 cd02911 arch_FMN Archeal FMN-b 76.5 14 0.0003 32.9 7.8 59 134-196 114-172 (233)
304 cd02930 DCR_FMN 2,4-dienoyl-Co 76.3 60 0.0013 30.4 12.4 108 120-227 38-209 (353)
305 PRK02615 thiamine-phosphate py 76.3 5 0.00011 38.3 5.2 58 166-228 241-300 (347)
306 cd06277 PBP1_LacI_like_1 Ligan 76.3 31 0.00067 29.3 9.8 58 163-231 32-89 (268)
307 PRK07315 fructose-bisphosphate 76.2 30 0.00066 32.1 10.2 88 122-218 36-124 (293)
308 cd00502 DHQase_I Type I 3-dehy 76.2 51 0.0011 28.7 11.2 97 131-232 59-184 (225)
309 PRK06801 hypothetical protein; 76.0 20 0.00044 33.2 9.0 65 165-230 18-82 (286)
310 TIGR02321 Pphn_pyruv_hyd phosp 75.9 38 0.00082 31.5 10.8 84 141-227 56-152 (290)
311 TIGR03151 enACPred_II putative 75.8 20 0.00044 33.2 9.1 74 149-231 150-223 (307)
312 PRK07455 keto-hydroxyglutarate 75.8 34 0.00073 29.4 9.8 80 122-227 78-157 (187)
313 PF02548 Pantoate_transf: Keto 75.8 45 0.00097 30.9 11.1 77 140-228 56-137 (261)
314 KOG2335|consensus 75.6 18 0.00039 34.9 8.7 93 132-227 113-208 (358)
315 COG0821 gcpE 1-hydroxy-2-methy 75.5 14 0.00031 35.5 7.9 68 153-225 113-197 (361)
316 PRK08255 salicylyl-CoA 5-hydro 75.5 15 0.00033 38.0 8.9 83 144-227 596-692 (765)
317 PRK09195 gatY tagatose-bisphos 75.1 17 0.00038 33.7 8.3 64 167-231 20-83 (284)
318 PRK11815 tRNA-dihydrouridine s 74.9 15 0.00033 34.3 8.0 66 163-229 64-140 (333)
319 PLN02979 glycolate oxidase 74.9 15 0.00033 35.4 8.1 88 127-220 244-333 (366)
320 PRK10550 tRNA-dihydrouridine s 74.8 15 0.00033 34.2 8.0 66 163-229 62-140 (312)
321 cd04741 DHOD_1A_like Dihydroor 74.7 23 0.00049 32.5 9.0 52 147-203 228-280 (294)
322 TIGR00735 hisF imidazoleglycer 74.7 19 0.0004 32.1 8.2 50 175-228 154-205 (254)
323 COG2022 ThiG Uncharacterized e 74.7 7.7 0.00017 35.7 5.7 79 124-215 147-229 (262)
324 COG1850 RbcL Ribulose 1,5-bisp 74.5 15 0.00033 36.0 8.0 78 142-228 199-280 (429)
325 TIGR01036 pyrD_sub2 dihydrooro 74.4 26 0.00057 32.9 9.5 108 123-234 74-222 (335)
326 PRK13111 trpA tryptophan synth 74.3 56 0.0012 29.7 11.3 112 101-227 93-205 (258)
327 PRK07998 gatY putative fructos 74.2 28 0.00061 32.4 9.4 88 122-219 36-123 (283)
328 cd07900 Adenylation_DNA_ligase 74.1 8 0.00017 34.0 5.6 66 133-199 132-198 (219)
329 TIGR00222 panB 3-methyl-2-oxob 74.0 21 0.00046 32.9 8.5 66 146-226 116-199 (263)
330 PRK11197 lldD L-lactate dehydr 74.0 12 0.00025 36.3 7.1 88 127-220 266-355 (381)
331 PLN02460 indole-3-glycerol-pho 73.9 6.3 0.00014 37.6 5.2 48 177-230 140-189 (338)
332 PRK09701 D-allose transporter 73.8 48 0.001 29.6 10.7 81 143-231 34-116 (311)
333 TIGR02955 TMAO_TorT TMAO reduc 73.8 45 0.00097 29.4 10.4 75 148-231 14-90 (295)
334 cd06290 PBP1_LacI_like_9 Ligan 73.7 40 0.00088 28.5 9.8 72 149-231 15-86 (265)
335 TIGR01306 GMP_reduct_2 guanosi 73.6 48 0.001 31.4 11.0 112 97-228 30-143 (321)
336 TIGR03884 sel_bind_Methan sele 73.6 6.3 0.00014 29.9 4.1 30 166-196 19-49 (74)
337 cd00564 TMP_TenI Thiamine mono 73.6 9.2 0.0002 31.3 5.6 58 165-228 95-156 (196)
338 cd04824 eu_ALAD_PBGS_cysteine_ 73.5 6.4 0.00014 37.4 5.1 79 146-232 165-273 (320)
339 cd06284 PBP1_LacI_like_6 Ligan 73.4 42 0.0009 28.2 9.7 72 149-231 15-86 (267)
340 cd04724 Tryptophan_synthase_al 73.2 49 0.0011 29.4 10.5 77 146-233 62-140 (242)
341 TIGR00262 trpA tryptophan synt 73.2 25 0.00053 31.8 8.7 65 167-232 15-99 (256)
342 PRK10423 transcriptional repre 73.1 34 0.00074 30.2 9.5 60 163-231 86-145 (327)
343 PRK12737 gatY tagatose-bisphos 73.1 22 0.00047 33.0 8.4 64 166-230 19-82 (284)
344 PRK00115 hemE uroporphyrinogen 73.1 34 0.00074 31.8 9.8 47 173-220 183-233 (346)
345 PRK01033 imidazole glycerol ph 73.1 23 0.0005 31.8 8.4 70 125-202 162-232 (258)
346 TIGR01481 ccpA catabolite cont 73.0 37 0.00081 30.0 9.7 72 150-231 76-147 (329)
347 cd06294 PBP1_ycjW_transcriptio 73.0 37 0.0008 28.7 9.3 58 164-232 35-93 (270)
348 PRK09195 gatY tagatose-bisphos 73.0 34 0.00074 31.8 9.7 89 121-219 35-123 (284)
349 cd06293 PBP1_LacI_like_11 Liga 73.0 30 0.00066 29.4 8.9 74 148-231 14-87 (269)
350 PF04551 GcpE: GcpE protein; 72.8 7.6 0.00016 37.4 5.5 60 163-227 131-206 (359)
351 TIGR00007 phosphoribosylformim 72.5 18 0.00039 31.3 7.4 67 125-200 155-222 (230)
352 PRK08227 autoinducer 2 aldolas 72.3 46 0.001 30.6 10.3 93 120-231 99-201 (264)
353 TIGR01305 GMP_reduct_1 guanosi 72.0 16 0.00034 35.1 7.4 81 141-230 75-158 (343)
354 COG1609 PurR Transcriptional r 71.9 66 0.0014 29.7 11.4 76 146-231 71-146 (333)
355 PLN02493 probable peroxisomal 71.9 17 0.00037 35.0 7.7 89 125-219 242-333 (367)
356 PRK11177 phosphoenolpyruvate-p 71.6 21 0.00045 36.3 8.6 98 124-228 211-332 (575)
357 PRK06806 fructose-bisphosphate 71.6 46 0.00099 30.7 10.2 89 121-219 35-123 (281)
358 cd06310 PBP1_ABC_sugar_binding 71.5 63 0.0014 27.5 10.9 76 148-231 14-91 (273)
359 cd04729 NanE N-acetylmannosami 71.5 34 0.00074 29.5 8.9 95 121-227 85-182 (219)
360 TIGR01302 IMP_dehydrog inosine 71.5 65 0.0014 31.4 11.7 94 121-227 229-332 (450)
361 TIGR01858 tag_bisphos_ald clas 71.3 26 0.00056 32.5 8.5 63 167-230 18-80 (282)
362 cd01841 NnaC_like NnaC (CMP-Ne 71.3 52 0.0011 26.4 9.6 69 164-233 24-101 (174)
363 PRK00366 ispG 4-hydroxy-3-meth 71.2 24 0.00052 34.1 8.4 67 154-225 121-204 (360)
364 TIGR00007 phosphoribosylformim 71.2 19 0.00041 31.1 7.3 50 176-227 145-194 (230)
365 COG3142 CutC Uncharacterized p 71.0 3.9 8.5E-05 37.3 3.0 110 74-192 75-202 (241)
366 PRK12738 kbaY tagatose-bisphos 71.0 28 0.00061 32.4 8.7 62 168-230 21-82 (286)
367 PRK11197 lldD L-lactate dehydr 70.7 21 0.00045 34.6 8.0 73 142-227 231-305 (381)
368 cd04724 Tryptophan_synthase_al 70.7 24 0.00052 31.4 8.0 65 167-232 5-88 (242)
369 PRK06801 hypothetical protein; 70.7 60 0.0013 30.1 10.8 88 121-218 35-122 (286)
370 PRK12857 fructose-1,6-bisphosp 70.6 26 0.00057 32.5 8.4 64 167-231 20-83 (284)
371 PRK15452 putative protease; Pr 70.4 35 0.00077 33.5 9.7 72 124-199 19-99 (443)
372 PRK08185 hypothetical protein; 70.4 20 0.00042 33.3 7.5 64 166-231 14-77 (283)
373 cd00947 TBP_aldolase_IIB Tagat 70.2 27 0.00058 32.3 8.3 63 167-230 15-77 (276)
374 PRK07998 gatY putative fructos 69.9 29 0.00062 32.3 8.5 64 166-230 19-82 (283)
375 cd07897 Adenylation_DNA_ligase 69.9 14 0.0003 32.1 6.1 59 140-199 128-187 (207)
376 cd03315 MLE_like Muconate lact 69.6 34 0.00075 30.3 8.7 72 146-227 113-185 (265)
377 cd07903 Adenylation_DNA_ligase 69.6 12 0.00026 32.5 5.7 66 133-199 138-204 (225)
378 cd01575 PBP1_GntR Ligand-bindi 69.5 50 0.0011 27.7 9.4 59 163-231 29-87 (268)
379 cd04737 LOX_like_FMN L-Lactate 69.4 24 0.00053 33.6 8.1 73 142-227 207-281 (351)
380 PRK13475 ribulose bisphosphate 69.4 29 0.00063 34.3 8.8 58 139-197 198-264 (443)
381 PRK02083 imidazole glycerol ph 69.4 36 0.00077 30.2 8.7 61 149-215 186-246 (253)
382 TIGR01858 tag_bisphos_ald clas 69.3 47 0.001 30.8 9.7 88 121-218 33-120 (282)
383 cd06282 PBP1_GntR_like_2 Ligan 69.3 66 0.0014 27.0 10.1 34 164-197 30-63 (266)
384 cd02911 arch_FMN Archeal FMN-b 69.3 63 0.0014 28.7 10.3 63 163-229 72-146 (233)
385 COG1902 NemA NADH:flavin oxido 69.3 31 0.00067 33.1 8.8 83 145-229 195-295 (363)
386 PRK07695 transcriptional regul 69.1 12 0.00026 32.0 5.4 56 167-227 97-154 (201)
387 cd01840 SGNH_hydrolase_yrhL_li 69.1 58 0.0013 26.1 9.6 91 130-227 23-115 (150)
388 PRK13398 3-deoxy-7-phosphohept 69.0 34 0.00073 31.3 8.7 63 163-227 27-96 (266)
389 COG0113 HemB Delta-aminolevuli 68.9 9 0.0002 36.4 5.0 78 146-232 174-280 (330)
390 PF03652 UPF0081: Uncharacteri 68.8 9.4 0.0002 31.4 4.6 58 175-233 37-98 (135)
391 PRK06843 inosine 5-monophospha 68.8 76 0.0017 31.0 11.5 95 120-227 157-261 (404)
392 PRK06256 biotin synthase; Vali 68.8 66 0.0014 29.6 10.6 53 143-196 184-236 (336)
393 PF01188 MR_MLE: Mandelate rac 68.8 39 0.00083 23.9 8.1 64 152-227 2-66 (67)
394 PRK12737 gatY tagatose-bisphos 68.6 61 0.0013 30.1 10.3 102 108-219 22-123 (284)
395 CHL00200 trpA tryptophan synth 68.6 49 0.0011 30.2 9.6 79 144-233 75-155 (263)
396 cd01302 Cyclic_amidohydrolases 68.5 27 0.00058 32.3 8.0 74 126-203 93-184 (337)
397 cd07901 Adenylation_DNA_ligase 68.5 14 0.00031 31.8 5.8 58 140-199 132-189 (207)
398 cd06306 PBP1_TorT-like TorT-li 68.1 78 0.0017 27.2 10.9 74 149-231 15-90 (268)
399 PRK08673 3-deoxy-7-phosphohept 68.1 19 0.0004 34.3 7.0 63 163-227 93-162 (335)
400 PRK10936 TMAO reductase system 68.1 66 0.0014 29.3 10.5 77 146-231 59-137 (343)
401 PRK00748 1-(5-phosphoribosyl)- 68.1 27 0.00059 30.1 7.5 51 175-227 145-195 (233)
402 PF10113 Fibrillarin_2: Fibril 68.0 49 0.0011 33.0 9.9 82 133-219 193-274 (505)
403 TIGR02082 metH 5-methyltetrahy 67.9 1.3E+02 0.0029 33.4 14.1 98 120-231 153-262 (1178)
404 cd04736 MDH_FMN Mandelate dehy 67.9 19 0.0004 34.7 7.0 72 142-227 222-294 (361)
405 CHL00162 thiG thiamin biosynth 67.7 58 0.0013 30.3 9.8 83 125-218 155-239 (267)
406 TIGR01093 aroD 3-dehydroquinat 67.6 86 0.0019 27.5 11.5 67 163-231 118-188 (228)
407 smart00729 Elp3 Elongator prot 67.5 21 0.00046 28.7 6.4 55 143-197 133-188 (216)
408 TIGR01859 fruc_bis_ald_ fructo 67.3 87 0.0019 28.8 11.0 89 121-219 33-123 (282)
409 cd06314 PBP1_tmGBP Periplasmic 67.3 80 0.0017 27.0 10.5 79 144-231 9-88 (271)
410 PRK13111 trpA tryptophan synth 67.1 72 0.0016 29.0 10.4 80 144-233 72-153 (258)
411 cd04732 HisA HisA. Phosphorib 67.0 35 0.00075 29.4 8.0 45 148-199 61-105 (234)
412 PRK13125 trpA tryptophan synth 66.8 52 0.0011 29.2 9.3 86 125-220 149-240 (244)
413 TIGR00433 bioB biotin syntheta 66.8 93 0.002 27.7 11.0 48 143-195 155-206 (296)
414 TIGR01163 rpe ribulose-phospha 66.3 47 0.001 27.8 8.5 68 134-210 137-206 (210)
415 TIGR03571 lucif_BA3436 lucifer 66.3 46 0.001 30.5 9.1 72 143-220 203-294 (298)
416 PRK04523 N-acetylornithine car 66.2 38 0.00081 32.1 8.6 94 132-231 140-238 (335)
417 TIGR01417 PTS_I_fam phosphoeno 66.2 72 0.0016 32.3 11.1 97 124-227 210-330 (565)
418 PRK08645 bifunctional homocyst 66.2 79 0.0017 32.2 11.5 97 120-233 130-235 (612)
419 PRK14987 gluconate operon tran 66.2 61 0.0013 28.8 9.7 71 148-228 78-148 (331)
420 PRK13399 fructose-1,6-bisphosp 66.0 43 0.00093 32.1 9.0 65 166-230 19-83 (347)
421 PRK12857 fructose-1,6-bisphosp 65.9 27 0.00059 32.4 7.5 88 121-218 35-122 (284)
422 PRK14042 pyruvate carboxylase 65.9 55 0.0012 33.6 10.2 97 121-229 102-204 (596)
423 cd03332 LMO_FMN L-Lactate 2-mo 65.7 27 0.00057 33.9 7.6 74 141-227 238-313 (383)
424 cd03465 URO-D_like The URO-D _ 65.7 55 0.0012 29.6 9.4 58 174-231 166-230 (330)
425 COG1794 RacX Aspartate racemas 65.4 56 0.0012 29.8 9.1 83 134-226 4-102 (230)
426 PRK12738 kbaY tagatose-bisphos 65.4 75 0.0016 29.6 10.3 101 108-218 22-122 (286)
427 TIGR03470 HpnH hopanoid biosyn 65.4 57 0.0012 30.2 9.6 57 163-219 162-228 (318)
428 COG1830 FbaB DhnA-type fructos 65.3 21 0.00045 33.2 6.5 64 150-217 192-257 (265)
429 PF01487 DHquinase_I: Type I 3 65.2 32 0.0007 29.8 7.5 62 168-231 2-63 (224)
430 TIGR01212 radical SAM protein, 65.2 55 0.0012 30.1 9.3 85 144-229 161-259 (302)
431 PRK02412 aroD 3-dehydroquinate 65.0 58 0.0013 29.3 9.3 72 163-234 15-86 (253)
432 PRK02506 dihydroorotate dehydr 64.9 9.1 0.0002 35.5 4.2 48 150-202 229-276 (310)
433 TIGR00612 ispG_gcpE 1-hydroxy- 64.8 37 0.0008 32.7 8.2 58 163-225 121-195 (346)
434 PLN02493 probable peroxisomal 64.7 40 0.00087 32.5 8.6 74 141-227 209-284 (367)
435 PRK04302 triosephosphate isome 64.6 52 0.0011 28.7 8.7 62 143-211 155-216 (223)
436 COG1902 NemA NADH:flavin oxido 64.6 38 0.00083 32.5 8.4 84 116-199 40-172 (363)
437 TIGR00036 dapB dihydrodipicoli 64.6 53 0.0012 29.6 9.0 91 121-220 85-179 (266)
438 cd04734 OYE_like_3_FMN Old yel 64.5 1.3E+02 0.0027 28.3 12.5 81 119-199 37-164 (343)
439 PRK06267 hypothetical protein; 64.4 63 0.0014 30.4 9.7 82 143-225 150-239 (350)
440 PRK13384 delta-aminolevulinic 64.3 12 0.00026 35.6 4.8 78 146-232 171-276 (322)
441 TIGR01520 FruBisAldo_II_A fruc 64.3 50 0.0011 31.9 9.1 83 143-231 10-108 (357)
442 PRK08610 fructose-bisphosphate 64.2 70 0.0015 29.8 9.8 90 122-219 36-126 (286)
443 PRK00043 thiE thiamine-phospha 64.2 37 0.00081 28.5 7.5 60 149-216 148-207 (212)
444 cd06280 PBP1_LacI_like_4 Ligan 64.1 68 0.0015 27.2 9.2 58 163-231 29-86 (263)
445 cd03557 L-arabinose_isomerase 64.0 74 0.0016 31.8 10.6 62 163-232 39-101 (484)
446 PRK13802 bifunctional indole-3 64.0 16 0.00035 38.0 6.1 62 163-230 49-119 (695)
447 PF00532 Peripla_BP_1: Peripla 63.8 70 0.0015 28.6 9.6 74 148-232 16-89 (279)
448 PRK15395 methyl-galactoside AB 63.8 1E+02 0.0023 27.9 10.8 80 144-231 35-115 (330)
449 KOG2367|consensus 63.8 50 0.0011 33.4 9.1 89 146-239 129-232 (560)
450 PLN02979 glycolate oxidase 63.7 44 0.00094 32.4 8.6 74 141-227 208-283 (366)
451 COG2876 AroA 3-deoxy-D-arabino 63.6 19 0.00042 33.7 5.9 62 164-227 46-114 (286)
452 cd01574 PBP1_LacI Ligand-bindi 63.6 80 0.0017 26.6 9.5 72 150-231 16-88 (264)
453 cd04731 HisF The cyclase subun 63.5 17 0.00036 31.9 5.4 51 175-227 26-76 (243)
454 PRK10415 tRNA-dihydrouridine s 63.4 38 0.00081 31.6 8.0 65 163-229 64-140 (321)
455 PRK07535 methyltetrahydrofolat 63.4 86 0.0019 28.5 10.1 86 132-227 94-194 (261)
456 PTZ00314 inosine-5'-monophosph 63.2 87 0.0019 31.2 10.9 93 121-226 246-348 (495)
457 PRK11572 copper homeostasis pr 63.1 96 0.0021 28.5 10.3 90 121-220 79-168 (248)
458 PLN02826 dihydroorotate dehydr 63.1 65 0.0014 31.4 9.8 83 115-198 204-298 (409)
459 cd01573 modD_like ModD; Quinol 63.0 52 0.0011 30.1 8.7 65 149-227 171-235 (272)
460 COG3684 LacD Tagatose-1,6-bisp 63.0 61 0.0013 30.5 9.0 83 145-229 142-237 (306)
461 COG4981 Enoyl reductase domain 62.9 52 0.0011 34.0 9.2 129 89-234 45-188 (717)
462 cd00384 ALAD_PBGS Porphobilino 62.9 14 0.00031 35.0 5.0 78 146-232 161-267 (314)
463 PRK11840 bifunctional sulfur c 62.7 50 0.0011 31.5 8.6 77 130-217 221-298 (326)
464 cd04823 ALAD_PBGS_aspartate_ri 62.6 15 0.00032 35.0 5.1 91 125-232 152-272 (320)
465 cd06278 PBP1_LacI_like_2 Ligan 62.6 71 0.0015 26.8 9.0 45 177-231 42-86 (266)
466 cd06291 PBP1_Qymf_like Ligand 62.6 86 0.0019 26.5 9.5 55 164-231 30-84 (265)
467 PLN02925 4-hydroxy-3-methylbut 62.5 59 0.0013 34.2 9.7 73 155-232 215-308 (733)
468 TIGR00742 yjbN tRNA dihydrouri 62.2 37 0.00079 31.8 7.7 64 163-228 54-129 (318)
469 COG0159 TrpA Tryptophan syntha 62.1 1E+02 0.0022 28.6 10.3 83 142-234 75-159 (265)
470 PRK07709 fructose-bisphosphate 62.1 95 0.0021 28.9 10.3 90 122-219 36-126 (285)
471 PF03060 NMO: Nitronate monoox 62.1 20 0.00043 33.4 5.9 58 163-227 136-195 (330)
472 PRK14024 phosphoribosyl isomer 62.1 43 0.00093 29.7 7.8 51 174-227 144-195 (241)
473 PRK06552 keto-hydroxyglutarate 62.0 24 0.00051 31.2 6.1 62 122-194 32-93 (213)
474 PRK13523 NADPH dehydrogenase N 61.9 51 0.0011 31.0 8.6 79 120-198 42-164 (337)
475 PRK13585 1-(5-phosphoribosyl)- 61.8 32 0.00069 29.9 6.9 77 127-212 161-238 (241)
476 TIGR01182 eda Entner-Doudoroff 61.8 53 0.0011 29.1 8.2 78 123-226 75-152 (204)
477 PRK06852 aldolase; Validated 61.8 35 0.00077 32.1 7.5 63 152-217 221-287 (304)
478 PLN02495 oxidoreductase, actin 61.7 27 0.00058 33.8 6.8 56 140-199 162-217 (385)
479 PF01791 DeoC: DeoC/LacD famil 61.5 6.9 0.00015 34.3 2.6 69 163-231 56-134 (236)
480 KOG0538|consensus 61.4 59 0.0013 31.3 8.8 80 126-211 243-324 (363)
481 cd00740 MeTr MeTr subgroup of 61.4 31 0.00067 31.2 6.8 59 170-230 20-78 (252)
482 TIGR02779 NHEJ_ligase_lig DNA 61.3 25 0.00054 32.3 6.3 59 139-199 109-167 (298)
483 PRK13125 trpA tryptophan synth 61.2 66 0.0014 28.6 8.8 75 150-232 64-139 (244)
484 cd06822 PLPDE_III_YBL036c_euk 61.2 53 0.0011 29.4 8.2 81 135-218 88-182 (227)
485 cd00947 TBP_aldolase_IIB Tagat 61.2 1.2E+02 0.0026 28.1 10.7 87 123-219 32-118 (276)
486 cd00429 RPE Ribulose-5-phospha 61.1 35 0.00077 28.5 6.8 43 163-211 166-208 (211)
487 PF01081 Aldolase: KDPG and KH 61.1 57 0.0012 28.7 8.2 62 149-226 91-152 (196)
488 PF09370 TIM-br_sig_trns: TIM- 60.9 15 0.00033 34.0 4.8 73 149-227 1-86 (268)
489 PF07302 AroM: AroM protein; 60.8 1.3E+02 0.0028 27.2 14.0 143 82-234 44-190 (221)
490 PF01702 TGT: Queuine tRNA-rib 60.8 42 0.0009 29.6 7.5 62 128-199 82-144 (238)
491 TIGR01859 fruc_bis_ald_ fructo 60.8 61 0.0013 29.9 8.7 62 168-230 19-82 (282)
492 cd00946 FBP_aldolase_IIA Class 60.7 58 0.0013 31.2 8.8 80 146-231 2-96 (345)
493 cd04736 MDH_FMN Mandelate dehy 60.7 39 0.00085 32.5 7.7 86 127-220 257-344 (361)
494 cd06304 PBP1_BmpA_like Peripla 60.6 72 0.0016 27.4 8.8 75 147-231 15-89 (260)
495 PRK07094 biotin synthase; Prov 60.4 98 0.0021 28.2 10.1 81 142-222 161-249 (323)
496 TIGR01521 FruBisAldo_II_B fruc 60.4 60 0.0013 31.2 8.9 65 166-230 17-81 (347)
497 PLN02826 dihydroorotate dehydr 60.4 33 0.0007 33.5 7.2 49 149-202 328-376 (409)
498 smart00642 Aamy Alpha-amylase 60.3 71 0.0015 26.9 8.5 61 172-234 15-95 (166)
499 PF05690 ThiG: Thiazole biosyn 60.2 23 0.0005 32.6 5.7 63 149-219 164-226 (247)
500 PRK09140 2-dehydro-3-deoxy-6-p 60.1 39 0.00085 29.6 7.1 79 122-227 77-156 (206)
No 1
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.6e-34 Score=261.53 Aligned_cols=133 Identities=33% Similarity=0.452 Sum_probs=123.0
Q ss_pred ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602 84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT 161 (239)
Q Consensus 84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G 161 (239)
++| +|++||++++.+.++|++ -.|++|++++|||||+++||.|||.++++.+++.++|
T Consensus 13 vTPF~~dg~vD~~a~~~lv~~li--------------------~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~g 72 (299)
T COG0329 13 VTPFDEDGSVDEEALRRLVEFLI--------------------AAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGG 72 (299)
T ss_pred ccCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCC
Confidence 455 467788888888877773 2455689999999999999999999999999999999
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
|+|||+|+++++|+++++++++|+++|+|++|+.||||+++ +++++++||++|++++ ++|+||||+|.+||++++
T Consensus 73 -rvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~-~~~gl~~hf~~ia~a~-~lPvilYN~P~~tg~~l~ 147 (299)
T COG0329 73 -RVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKP-SQEGLYAHFKAIAEAV-DLPVILYNIPSRTGVDLS 147 (299)
T ss_pred -CCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCC-ChHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCC
Confidence 99999999999999999999999999999999999999999 9999999999999999 999999999999999885
No 2
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=100.00 E-value=2.6e-33 Score=254.41 Aligned_cols=134 Identities=25% Similarity=0.318 Sum_probs=124.2
Q ss_pred ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602 84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT 161 (239)
Q Consensus 84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G 161 (239)
++| +++.||++.+.++++|++ -.|+.|++++|+|||+++||.+||.++++.+++.++|
T Consensus 9 ~TPf~~dg~iD~~~l~~lv~~~~--------------------~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g 68 (294)
T TIGR02313 9 ITPFKRNGDIDEEALRELIEFQI--------------------EGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAG 68 (294)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC
Confidence 445 688888888888888873 2456789999999999999999999999999999999
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
++|||+||+++|++++++++++|+++|||++|++||+|+++ +++++++||++|++++|++||++||+|..||++|+
T Consensus 69 -~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~-~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~ 144 (294)
T TIGR02313 69 -RIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKP-NQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIA 144 (294)
T ss_pred -CCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCC-CHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCC
Confidence 99999999999999999999999999999999999999999 99999999999999997899999999999999875
No 3
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=99.98 E-value=7.5e-33 Score=253.19 Aligned_cols=129 Identities=17% Similarity=0.228 Sum_probs=119.8
Q ss_pred cccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE
Q psy9602 89 VMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV 168 (239)
Q Consensus 89 ~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa 168 (239)
++||++.+.++++|++ -.|+.|++++|||||+++||.|||+++++.+++.++| ++|||+
T Consensus 24 g~iD~~~l~~lv~~li--------------------~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g-rvpvi~ 82 (309)
T cd00952 24 DTVDLDETARLVERLI--------------------AAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG-RVPVFV 82 (309)
T ss_pred CCcCHHHHHHHHHHHH--------------------HcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 6788888877777773 2566789999999999999999999999999999999 999999
Q ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 169 QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 169 GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
|+++++|+++++++++|+++|||++|++||+|+++ +++++++||++|++++|++||+|||+|..||++|+
T Consensus 83 Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~-~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~ 152 (309)
T cd00952 83 GATTLNTRDTIARTRALLDLGADGTMLGRPMWLPL-DVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFP 152 (309)
T ss_pred EeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCC-CHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCC
Confidence 99999999999999999999999999999999999 99999999999999985699999999999999875
No 4
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=99.98 E-value=1.7e-32 Score=247.47 Aligned_cols=131 Identities=34% Similarity=0.484 Sum_probs=122.7
Q ss_pred cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCce
Q psy9602 87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFT 165 (239)
Q Consensus 87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvp 165 (239)
+++.||++.+.++++|++ -. |+.|++++|++||+++||.+||.++++.+++.+++ ++|
T Consensus 14 ~dg~iD~~~~~~~i~~l~--------------------~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~-~~~ 72 (288)
T cd00954 14 ENGEINEDVLRAIVDYLI--------------------EKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG-KVT 72 (288)
T ss_pred CCCCCCHHHHHHHHHHHH--------------------hcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-CCe
Confidence 678888888888888883 23 56789999999999999999999999999999999 999
Q ss_pred EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
||+|+++.+++++++++++|+++|||++|++||+|+++ +++++++||++|++++|++||++||+|..||++|+
T Consensus 73 viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~-~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~ 145 (288)
T cd00954 73 LIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKF-SFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLT 145 (288)
T ss_pred EEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC-CHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCC
Confidence 99999999999999999999999999999999999998 99999999999999997899999999999999875
No 5
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=99.98 E-value=1.7e-32 Score=248.73 Aligned_cols=131 Identities=24% Similarity=0.350 Sum_probs=121.3
Q ss_pred cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcC-CCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCce
Q psy9602 87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAP-IIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFT 165 (239)
Q Consensus 87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~g-g~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvp 165 (239)
++++||++++.++++|++ -.| +.|++++|||||+++||.+||.++++.+++.+++ ++|
T Consensus 14 ~dg~iD~~~~~~~i~~~i--------------------~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~-~~p 72 (290)
T TIGR00683 14 EDGTINEKGLRQIIRHNI--------------------DKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD-QIA 72 (290)
T ss_pred CCCCcCHHHHHHHHHHHH--------------------hCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC-CCc
Confidence 677888888888888772 244 5688999999999999999999999999999999 999
Q ss_pred EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
||+||++.+++++++++++|+++|||++|++||+|+++ +++++++||++|+++++++||+|||+|..||++|+
T Consensus 73 vi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~-~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~ 145 (290)
T TIGR00683 73 LIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKF-SFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMG 145 (290)
T ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCC-CHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcC
Confidence 99999999999999999999999999999999999999 99999999999999876799999999999999885
No 6
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=99.97 E-value=3.3e-32 Score=245.00 Aligned_cols=130 Identities=25% Similarity=0.347 Sum_probs=122.7
Q ss_pred cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602 87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV 166 (239)
Q Consensus 87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV 166 (239)
++++||++.+.++++|++ -.|+.|++++|++||+++||.+||+++++.+++.+++ ++||
T Consensus 12 ~~g~iD~~~~~~~i~~l~--------------------~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~-~~~v 70 (285)
T TIGR00674 12 EDGSVDFAALEKLIDFQI--------------------ENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG-RVPV 70 (285)
T ss_pred CCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC-CCeE
Confidence 688999999998888883 2466789999999999999999999999999999999 9999
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
|+|+++.|++++++++++|+++|||++|++||+|+++ +++++++||++|++++ ++||++||+|..||+++|
T Consensus 71 i~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~-~~~~i~~~~~~i~~~~-~~pi~lYn~P~~tg~~l~ 141 (285)
T TIGR00674 71 IAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKP-TQEGLYQHFKAIAEEV-DLPIILYNVPSRTGVSLY 141 (285)
T ss_pred EEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCC-CHHHHHHHHHHHHhcC-CCCEEEEECcHHhcCCCC
Confidence 9999999999999999999999999999999999999 9999999999999999 899999999999999875
No 7
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=99.97 E-value=3.6e-32 Score=245.89 Aligned_cols=129 Identities=32% Similarity=0.479 Sum_probs=119.5
Q ss_pred cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhc--CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCc
Q psy9602 87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMA--PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGF 164 (239)
Q Consensus 87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~--gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rv 164 (239)
++++||++.+.++++|+ ++ |+.|++++|++||+++||.+||.++++.+++.+++ ++
T Consensus 17 ~dg~iD~~~~~~li~~l---------------------~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~-~~ 74 (293)
T PRK04147 17 EDGQIDEQGLRRLVRFN---------------------IEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG-KV 74 (293)
T ss_pred CCCCcCHHHHHHHHHHH---------------------HhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC-CC
Confidence 56777777777776666 45 56689999999999999999999999999999999 99
Q ss_pred eEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 165 TVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 165 pVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
|||+|+++.+++++++++++|+++|||++|++||+|+++ +++++++||++|++++ ++||++||+|..||++|+
T Consensus 75 ~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~-~~~~l~~~f~~va~a~-~lPv~iYn~P~~tg~~l~ 147 (293)
T PRK04147 75 KLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPF-SFEEICDYYREIIDSA-DNPMIVYNIPALTGVNLS 147 (293)
T ss_pred CEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCC-CHHHHHHHHHHHHHhC-CCCEEEEeCchhhccCCC
Confidence 999999999999999999999999999999999999999 9999999999999999 899999999999999875
No 8
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=99.97 E-value=1.1e-31 Score=239.33 Aligned_cols=133 Identities=31% Similarity=0.432 Sum_probs=124.5
Q ss_pred ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602 84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT 161 (239)
Q Consensus 84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G 161 (239)
++| ++++||++.+.++++|++ -.|+.|++++|++||+++||.+||.++++.+++.+++
T Consensus 6 ~TPf~~dg~iD~~~~~~~i~~l~--------------------~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~ 65 (281)
T cd00408 6 VTPFTADGEVDLDALRRLVEFLI--------------------EAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG 65 (281)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC
Confidence 445 789999999999999883 2466789999999999999999999999999999998
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
++|||+|+++.+++++++++++|+++|+|++|++||+|+++ +++++++||++|++++ ++||+|||+|..||++++
T Consensus 66 -~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~-~~~~~~~~~~~ia~~~-~~pi~iYn~P~~tg~~l~ 140 (281)
T cd00408 66 -RVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKP-SQEGIVAHFKAVADAS-DLPVILYNIPGRTGVDLS 140 (281)
T ss_pred -CCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCC-CHHHHHHHHHHHHhcC-CCCEEEEECccccCCCCC
Confidence 99999999999999999999999999999999999999998 9999999999999998 899999999999999875
No 9
>PLN02417 dihydrodipicolinate synthase
Probab=99.97 E-value=1.3e-31 Score=241.58 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=120.9
Q ss_pred ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602 84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT 161 (239)
Q Consensus 84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G 161 (239)
++| +++.||++.+.++++|++ -.|+.|++++||+||+++||.+||.++++.+++.+++
T Consensus 10 ~TPf~~~g~iD~~~~~~~i~~l~--------------------~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~ 69 (280)
T PLN02417 10 KTPYLPDGRFDLEAYDSLVNMQI--------------------ENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG 69 (280)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCC
Confidence 455 678888888888888873 2466789999999999999999999999999999999
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
++|||+|++++||+++++++++|+++|||++|++||+|+++ +++++++||++|+++ . ||++||+|..||++|+
T Consensus 70 -~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~-~~~~i~~~f~~va~~--~-pi~lYn~P~~tg~~l~ 142 (280)
T PLN02417 70 -KIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKT-SQEGLIKHFETVLDM--G-PTIIYNVPGRTGQDIP 142 (280)
T ss_pred -CCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCC-CHHHHHHHHHHHHhh--C-CEEEEEChhHhCcCCC
Confidence 99999999999999999999999999999999999999999 999999999999996 4 9999999999999875
No 10
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=99.97 E-value=3.4e-31 Score=238.69 Aligned_cols=130 Identities=25% Similarity=0.345 Sum_probs=120.4
Q ss_pred cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602 87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV 166 (239)
Q Consensus 87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV 166 (239)
++++||++.+.+.++|++ -.|+.|++++|++||+++||.+||.++++.+++.+++ ++||
T Consensus 15 ~dg~iD~~~l~~~i~~l~--------------------~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~-~~~v 73 (292)
T PRK03170 15 EDGSVDFAALRKLVDYLI--------------------ANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG-RVPV 73 (292)
T ss_pred CCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC-CCcE
Confidence 677788888777777772 2466689999999999999999999999999999999 9999
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
|+||++.+++++++++++|+++|+|++|++||+|+.+ +++++++||++|++++ ++||++||+|..||++||
T Consensus 74 i~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~-~~~~i~~~~~~ia~~~-~~pv~lYn~P~~~g~~l~ 144 (292)
T PRK03170 74 IAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKP-TQEGLYQHFKAIAEAT-DLPIILYNVPGRTGVDIL 144 (292)
T ss_pred EeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCC-CHHHHHHHHHHHHhcC-CCCEEEEECccccCCCCC
Confidence 9999999999999999999999999999999999998 9999999999999999 899999999999999875
No 11
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=99.97 E-value=4e-31 Score=236.74 Aligned_cols=130 Identities=25% Similarity=0.361 Sum_probs=121.0
Q ss_pred cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602 87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV 166 (239)
Q Consensus 87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV 166 (239)
+++.||++++.+.++|++ -.|+.|++++|++||+++||.+||+++++.+++.+++ ++||
T Consensus 14 ~dg~iD~~~~~~~i~~l~--------------------~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~-~~~v 72 (284)
T cd00950 14 DDGSVDFDALERLIEFQI--------------------ENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG-RVPV 72 (284)
T ss_pred CCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC-CCcE
Confidence 678888888888888772 2456688999999999999999999999999999998 9999
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
|+|+++.|++++++++++|+++|+|++|++||+|+++ +++++++||++|++++ ++||+|||+|..||++||
T Consensus 73 i~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~-~~~~l~~~~~~ia~~~-~~pi~lYn~P~~~g~~ls 143 (284)
T cd00950 73 IAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKP-SQEGLYAHFKAIAEAT-DLPVILYNVPGRTGVNIE 143 (284)
T ss_pred EeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHhcC-CCCEEEEEChhHhCCCCC
Confidence 9999999999999999999999999999999999998 9999999999999998 899999999999999875
No 12
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=99.97 E-value=1.3e-31 Score=240.84 Aligned_cols=130 Identities=34% Similarity=0.493 Sum_probs=117.6
Q ss_pred cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602 87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV 166 (239)
Q Consensus 87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV 166 (239)
++++||++++.+.++|++ -.|+.|++++|++||+++||.+||.++++.+++.+++ ++||
T Consensus 15 ~dg~id~~~~~~~i~~l~--------------------~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~-~~~v 73 (289)
T PF00701_consen 15 ADGSIDEDALKRLIDFLI--------------------EAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG-RVPV 73 (289)
T ss_dssp TTSSB-HHHHHHHHHHHH--------------------HTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT-SSEE
T ss_pred CCcCcCHHHHHHHHHHHH--------------------HcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC-ceEE
Confidence 677888888877777772 2456689999999999999999999999999999999 9999
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
|+||++.|++++++++++|+++|||++|++||+|+.+ +++++++||++|++++ ++||++||+|..||++||
T Consensus 74 i~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~-s~~~l~~y~~~ia~~~-~~pi~iYn~P~~tg~~ls 144 (289)
T PF00701_consen 74 IAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKP-SQEELIDYFRAIADAT-DLPIIIYNNPARTGNDLS 144 (289)
T ss_dssp EEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSC-CHHHHHHHHHHHHHHS-SSEEEEEEBHHHHSSTSH
T ss_pred EecCcchhHHHHHHHHHHHhhcCceEEEEeccccccc-hhhHHHHHHHHHHhhc-CCCEEEEECCCccccCCC
Confidence 9999999999999999999999999999999999998 9999999999999998 999999999999998874
No 13
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=99.96 E-value=7.9e-30 Score=231.18 Aligned_cols=126 Identities=23% Similarity=0.290 Sum_probs=114.4
Q ss_pred cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE
Q psy9602 87 EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV 166 (239)
Q Consensus 87 ~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV 166 (239)
++++||++.++++++|++ -.|+.|++++|+|||+++||.+||+++++.+++.+++ ++||
T Consensus 19 ~dg~iD~~~l~~li~~l~--------------------~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g-~~pv 77 (296)
T TIGR03249 19 ADGSFDEAAYRENIEWLL--------------------GYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG-KVPV 77 (296)
T ss_pred CCCCcCHHHHHHHHHHHH--------------------hcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC-CCcE
Confidence 677888888877777772 2455689999999999999999999999999999999 9999
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
|+||++ +|+++++++++|+++|||++|++||+|+++ +++++++||++|++++ ++||+||| .||++|+
T Consensus 78 i~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~-s~~~i~~~f~~v~~a~-~~pvilYn---~~g~~l~ 144 (296)
T TIGR03249 78 YTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYLING-EQEGLYAHVEAVCEST-DLGVIVYQ---RDNAVLN 144 (296)
T ss_pred EEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCCCCC-CHHHHHHHHHHHHhcc-CCCEEEEe---CCCCCCC
Confidence 999996 799999999999999999999999999999 9999999999999999 89999999 4577664
No 14
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=99.96 E-value=1e-29 Score=231.54 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=115.8
Q ss_pred ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602 84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT 161 (239)
Q Consensus 84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G 161 (239)
++| +++.||++++.++++|++ -.|+.|++++||+||+++||.+||+++++.+++.+++
T Consensus 16 vTPf~~dg~iD~~~l~~li~~l~--------------------~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~ 75 (303)
T PRK03620 16 VTPFDADGSFDEAAYREHLEWLA--------------------PYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAG 75 (303)
T ss_pred eCCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC
Confidence 445 677888888888887773 2456689999999999999999999999999999999
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
++|||+|++. +++++++++++|+++|||++|++||+|+++ +++++++||++|++++ ++||+|||+| |++||
T Consensus 76 -~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~-~~~~i~~~f~~va~~~-~lpi~lYn~~---g~~l~ 146 (303)
T PRK03620 76 -RVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYLTEA-PQEGLAAHVEAVCKST-DLGVIVYNRD---NAVLT 146 (303)
T ss_pred -CCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhC-CCCEEEEcCC---CCCCC
Confidence 9999999997 999999999999999999999999999998 9999999999999999 8999999976 45543
No 15
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=99.96 E-value=2.8e-29 Score=226.40 Aligned_cols=124 Identities=30% Similarity=0.429 Sum_probs=113.0
Q ss_pred cccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE
Q psy9602 89 VMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV 168 (239)
Q Consensus 89 ~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa 168 (239)
++||++.+.++++|++ -.|++|++++|+|||+++||.+||+++++.+++.+ + + ||+
T Consensus 15 g~iD~~~~~~li~~l~--------------------~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~-~--vi~ 70 (279)
T cd00953 15 NKIDKEKFKKHCENLI--------------------SKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-D-K--VIF 70 (279)
T ss_pred CCcCHHHHHHHHHHHH--------------------HcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-C-C--EEE
Confidence 8888888888888873 25667899999999999999999999999999987 5 4 899
Q ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 169 QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 169 GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
||++.+++++++++++|+++|||++|++||+|+.+.+++++++||++|++ ++||++||+|..||++|+
T Consensus 71 gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~---~lpv~iYn~P~~tg~~l~ 138 (279)
T cd00953 71 QVGSLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS---PYPTFIYNYPKATGYDIN 138 (279)
T ss_pred EeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh---cCCEEEEeCccccCCCCC
Confidence 99999999999999999999999999999999883289999999999999 599999999999999875
No 16
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=99.96 E-value=3.3e-29 Score=226.70 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=116.1
Q ss_pred ccc--cccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcC
Q psy9602 84 AHG--EVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKT 161 (239)
Q Consensus 84 ~~p--~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G 161 (239)
++| +++.||++.+.++++|++ -.|+.|++++||+||+++||.|||.++++.+++.+++
T Consensus 9 vTPf~~dg~iD~~~l~~l~~~l~--------------------~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~ 68 (289)
T cd00951 9 VTHFDADGSFDEDAYRAHVEWLL--------------------SYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG 68 (289)
T ss_pred ecCCCCCCCcCHHHHHHHHHHHH--------------------HcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC
Confidence 455 678888888888888772 2455689999999999999999999999999999999
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 162 HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 162 ~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
++|||+|++. +|+++++++++|+++|||++|++||+|+++ +++++++||++|++++ ++||++||+| |++|+
T Consensus 69 -~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~-~~~~i~~~f~~v~~~~-~~pi~lYn~~---g~~l~ 139 (289)
T cd00951 69 -RVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEA-PQEGLYAHVEAVCKST-DLGVIVYNRA---NAVLT 139 (289)
T ss_pred -CCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCC-CHHHHHHHHHHHHhcC-CCCEEEEeCC---CCCCC
Confidence 9999999997 999999999999999999999999999998 9999999999999999 8999999965 55553
No 17
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=99.60 E-value=1e-15 Score=126.90 Aligned_cols=99 Identities=15% Similarity=0.017 Sum_probs=85.6
Q ss_pred HHhhhc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCC----HHHHHHHHHHHHhCCCCEEEE
Q psy9602 121 ITLRMA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTC----FQEVVELAKHAESLNVHAVLC 195 (239)
Q Consensus 121 v~~~~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~S----t~eAIelar~A~~aGAdaVlV 195 (239)
+++.++ |+.+++++| ++++.+++..++.++||++|+++.+ ++++++++++|+++|||++++
T Consensus 19 ~~~~~~~gv~gi~~~g--------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 19 CDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHhCCcEEEECH--------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 334455 445788888 8888888887642599999999999 999999999999999999999
Q ss_pred CCCCCCCCCC--HHHHHHHHHHHHhhC-CCCcEEEEeCCCCc
Q psy9602 196 LPELFFTPAS--VEDLVDYLRDVGEAA-PATPLFYYHIPMFT 234 (239)
Q Consensus 196 ~PP~y~~~~s--~e~iv~yf~~Vaeat-pdLPIiLYN~P~~T 234 (239)
.||+|+.+ + ++++.+||+++++++ +++|+++||+|..+
T Consensus 85 ~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 85 VINIGSLK-EGDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred eccHHHHh-CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 99999887 7 899999999999984 38999999999876
No 18
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=99.47 E-value=1.9e-14 Score=135.59 Aligned_cols=119 Identities=14% Similarity=-0.050 Sum_probs=92.7
Q ss_pred HHHhhHHhhhcCCC-CEEEeccccCCcCCCHHHHHHHHHHHHHHhc---CCCceEEEecCCCCHHHHHHHHHHHHhCCCC
Q psy9602 116 MLLVGITLRMAPII-DQMVNGTTGEGVSMTTAERKLNLEAWMTEAK---THGFTVMVQIGGTCFQEVVELAKHAESLNVH 191 (239)
Q Consensus 116 ~l~~~v~~~~~gg~-glvV~GstGE~~sLT~eER~~li~~vve~~~---G~rvpVIaGVg~~St~eAIelar~A~~aGAd 191 (239)
.|+..+.+...+|. ++...|++||..+|+.+||.++++.+++.++ |.+.++++++++ ++++++++++.|+++|+|
T Consensus 147 ~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~-~~~e~i~~a~~a~~~Gad 225 (367)
T cd08205 147 ELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITG-DPDELRRRADRAVEAGAN 225 (367)
T ss_pred HHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC-CHHHHHHHHHHHHHcCCC
Confidence 33344444566665 5669999999999999999999999999888 514455555554 579999999999999999
Q ss_pred EEEECCCCCCCCCCHH-----H---HHHHHHH-------------------HHhhCCCCcEEEEeCCCCccccC
Q psy9602 192 AVLCLPELFFTPASVE-----D---LVDYLRD-------------------VGEAAPATPLFYYHIPMFTRVTL 238 (239)
Q Consensus 192 aVlV~PP~y~~~~s~e-----~---iv~yf~~-------------------VaeatpdLPIiLYN~P~~TG~~L 238 (239)
++||.||+|+.. ..+ + ++.|+.. |++.+ ++|+++||+|.- ++.+
T Consensus 226 ~vmv~~~~~g~~-~~~~l~~~~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~Rla-Gad~~~~~~~~g-k~~~ 296 (367)
T cd08205 226 ALLINPNLVGLD-ALRALAEDPDLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLA-GADAVIFPGPGG-RFPF 296 (367)
T ss_pred EEEEeccccccc-HHHHHHhcCCCeEEEccCcccccccCCCCcCCHHHHHHHHHHc-CCCccccCCCcc-CcCC
Confidence 999999998754 333 3 4455666 88988 899999999964 6554
No 19
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=99.17 E-value=4.6e-10 Score=100.21 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=88.2
Q ss_pred HHhhhcCC-CCEEE--------eccccCCcCCCHHHHHHHHHHHHHHhcC-CCceEEEe-----cCCCCHHHHHHHHHHH
Q psy9602 121 ITLRMAPI-IDQMV--------NGTTGEGVSMTTAERKLNLEAWMTEAKT-HGFTVMVQ-----IGGTCFQEVVELAKHA 185 (239)
Q Consensus 121 v~~~~~gg-~glvV--------~GstGE~~sLT~eER~~li~~vve~~~G-~rvpVIaG-----Vg~~St~eAIelar~A 185 (239)
+...++.| .++.+ +|++||...++.||+.+.++.++++.++ .+++|+++ ++..+++++|+.++.+
T Consensus 90 v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay 169 (243)
T cd00377 90 VRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAY 169 (243)
T ss_pred HHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHH
Confidence 33334544 57789 9999999999999999999999999875 37999999 6668999999999999
Q ss_pred HhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Q psy9602 186 ESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMF 233 (239)
Q Consensus 186 ~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~ 233 (239)
+++|||++++.+|. + .++++.++++. ++|+++|+.|..
T Consensus 170 ~~AGAD~v~v~~~~-----~----~~~~~~~~~~~-~~Pl~~~~~~~~ 207 (243)
T cd00377 170 AEAGADGIFVEGLK-----D----PEEIRAFAEAP-DVPLNVNMTPGG 207 (243)
T ss_pred HHcCCCEEEeCCCC-----C----HHHHHHHHhcC-CCCEEEEecCCC
Confidence 99999999999876 2 27888889887 899999999864
No 20
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=99.07 E-value=5.3e-10 Score=105.63 Aligned_cols=123 Identities=15% Similarity=-0.026 Sum_probs=102.1
Q ss_pred HHHHHHHHhhHHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhc----CCCceEEEecCCCCHHHHHHHHHHH
Q psy9602 111 LLLTCMLLVGITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAK----THGFTVMVQIGGTCFQEVVELAKHA 185 (239)
Q Consensus 111 ~~~~~~l~~~v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~----G~rvpVIaGVg~~St~eAIelar~A 185 (239)
....+.|+..+.....+|.+++ ..++.||..+++.+||.+++..+++.+. + ++++++++++. +.+++++++.|
T Consensus 137 GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~-~~~y~~Nita~-~~em~~ra~~a 214 (364)
T cd08210 137 GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGG-RTLYAPNVTGP-PTQLLERARFA 214 (364)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCC-cceEEEecCCC-HHHHHHHHHHH
Confidence 3455567677777778888766 9999999999999999999999998877 6 89999999987 66999999999
Q ss_pred HhCCCCEEEECCCCCC-----CCCCHHHH----HHH-------------------HHHHHhhCCCCcEEEEeCCCCcccc
Q psy9602 186 ESLNVHAVLCLPELFF-----TPASVEDL----VDY-------------------LRDVGEAAPATPLFYYHIPMFTRVT 237 (239)
Q Consensus 186 ~~aGAdaVlV~PP~y~-----~~~s~e~i----v~y-------------------f~~VaeatpdLPIiLYN~P~~TG~~ 237 (239)
+++|++++|+.|+.|. .. .++.. ..| |..|++.+ +.|+++||+|.- +++
T Consensus 215 ~~~Ga~~vMv~~~~~G~~~~~~l-~~~~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~Rla-Gad~~~~~~~~g-~~~ 291 (364)
T cd08210 215 KEAGAGGVLIAPGLTGLDTFREL-AEDFDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLA-GADAVIFPNYGG-RFG 291 (364)
T ss_pred HHcCCCEEEeecccchHHHHHHH-HhcCCCcEEEEccccccccccCCCcccHHHHHHHHHHHh-CCCEEEeCCCcC-Ccc
Confidence 9999999999999885 22 33444 445 99999999 899999999953 554
Q ss_pred C
Q psy9602 238 L 238 (239)
Q Consensus 238 L 238 (239)
+
T Consensus 292 ~ 292 (364)
T cd08210 292 F 292 (364)
T ss_pred C
Confidence 4
No 21
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=98.89 E-value=6.4e-09 Score=95.44 Aligned_cols=97 Identities=12% Similarity=0.183 Sum_probs=82.6
Q ss_pred cCCCCEEE-----------eccccCCcCCCHHHHHHHHHHHHHH-hcCCCceEEEe----cCCCCHHHHHHHHHHHHhCC
Q psy9602 126 APIIDQMV-----------NGTTGEGVSMTTAERKLNLEAWMTE-AKTHGFTVMVQ----IGGTCFQEVVELAKHAESLN 189 (239)
Q Consensus 126 ~gg~glvV-----------~GstGE~~sLT~eER~~li~~vve~-~~G~rvpVIaG----Vg~~St~eAIelar~A~~aG 189 (239)
.|+.|+.+ +|+.||...++.+|+.+.|+.++++ .++ +++|++. +...+++++|+.++.++++|
T Consensus 104 aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~-~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAG 182 (285)
T TIGR02320 104 RGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTE-DFMIIARVESLILGKGMEDALKRAEAYAEAG 182 (285)
T ss_pred cCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCC-CeEEEEecccccccCCHHHHHHHHHHHHHcC
Confidence 34457777 7888899999999999999999998 445 7999999 55678999999999999999
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 190 VHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 190 AdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
||++++. +... +.+++..+++.+....|++|+++
T Consensus 183 AD~ifv~---~~~~-~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 183 ADGIMIH---SRKK-DPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred CCEEEec---CCCC-CHHHHHHHHHHhhhhCCCCCEEE
Confidence 9999996 3234 88999999999987677889875
No 22
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.31 E-value=0.0025 Score=59.24 Aligned_cols=88 Identities=18% Similarity=0.149 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEE---CCCCCCCC--CC-HHHHHHHHHH
Q psy9602 142 SMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLC---LPELFFTP--AS-VEDLVDYLRD 215 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV---~PP~y~~~--~s-~e~iv~yf~~ 215 (239)
....+++.+.++.+.+.. ++||++++...+.++..+.++.++++|+|++.+ .||..... .. .+.+.+..++
T Consensus 83 n~g~d~~~~~i~~~~~~~---~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~ 159 (334)
T PRK07565 83 YVGPEEYLELIRRAKEAV---DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRA 159 (334)
T ss_pred CcCHHHHHHHHHHHHHhc---CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHH
Confidence 456899999998877754 479999999999999999999999999999999 55553211 02 2346677799
Q ss_pred HHhhCCCCcEEEEeCCCC
Q psy9602 216 VGEAAPATPLFYYHIPMF 233 (239)
Q Consensus 216 VaeatpdLPIiLYN~P~~ 233 (239)
|.+.+ ++||++.-.|..
T Consensus 160 v~~~~-~iPV~vKl~p~~ 176 (334)
T PRK07565 160 VKSAV-SIPVAVKLSPYF 176 (334)
T ss_pred HHhcc-CCcEEEEeCCCc
Confidence 99888 899999987754
No 23
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.64 E-value=0.039 Score=50.23 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=54.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCC-CCEEEE---C--CCC-CCCC-CCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLN-VHAVLC---L--PEL-FFTP-ASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aG-AdaVlV---~--PP~-y~~~-~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+.|+++.+.+.+.++-.+.++.++++| +|++-+ . .++ .+.. .+.+.+.+.+++|.+++ +.||++==.|
T Consensus 91 ~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~ 166 (301)
T PRK07259 91 DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP 166 (301)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC
Confidence 579999999999999999999999999 999977 2 232 1111 16788999999999998 8999875444
No 24
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=96.46 E-value=0.059 Score=49.38 Aligned_cols=107 Identities=12% Similarity=0.070 Sum_probs=81.9
Q ss_pred HHhhhcCCCC-EEEeccccCCcC-----CCHHHHHHHHHHHHHHhcCCCceEEEecC------CCCHHHHHHHHHHHHhC
Q psy9602 121 ITLRMAPIID-QMVNGTTGEGVS-----MTTAERKLNLEAWMTEAKTHGFTVMVQIG------GTCFQEVVELAKHAESL 188 (239)
Q Consensus 121 v~~~~~gg~g-lvV~GstGE~~s-----LT~eER~~li~~vve~~~G~rvpVIaGVg------~~St~eAIelar~A~~a 188 (239)
++...+.+.. +-+..+++|.+. .|.+|-.+.+..+++.++.....|.+++. ..+.+..+++++.+.++
T Consensus 80 ~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~ 159 (280)
T cd07945 80 VDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDL 159 (280)
T ss_pred HHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHc
Confidence 4444555554 556666666554 78899988888888887754567777776 34799999999999999
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 189 NVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 189 GAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
|++.+.+....... ++.++.++++.+.+..|++||-++-
T Consensus 160 G~~~i~l~DT~G~~--~P~~v~~l~~~l~~~~~~~~i~~H~ 198 (280)
T cd07945 160 PIKRIMLPDTLGIL--SPFETYTYISDMVKRYPNLHFDFHA 198 (280)
T ss_pred CCCEEEecCCCCCC--CHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 99998888765533 7899999999999988778887653
No 25
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=96.43 E-value=0.078 Score=48.74 Aligned_cols=108 Identities=19% Similarity=0.106 Sum_probs=79.6
Q ss_pred hhHHhhhcCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC---------CCCHHHHHHHHH
Q psy9602 119 VGITLRMAPIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---------GTCFQEVVELAK 183 (239)
Q Consensus 119 ~~v~~~~~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGVg---------~~St~eAIelar 183 (239)
.+++..++.+.+ +-++-+++| ....|.+|-.+.++.+++.++.....|.+.+. ..+.+..+++++
T Consensus 83 ~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
T PRK05692 83 KGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAE 162 (287)
T ss_pred HHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 355666666655 446667776 46678888888777777776643455543222 347899999999
Q ss_pred HHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 184 HAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 184 ~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.+.++|+|.+.+.....+. ++.++.+.++.+.+..|++||-++
T Consensus 163 ~~~~~G~d~i~l~DT~G~~--~P~~v~~lv~~l~~~~~~~~i~~H 205 (287)
T PRK05692 163 RLFALGCYEISLGDTIGVG--TPGQVRAVLEAVLAEFPAERLAGH 205 (287)
T ss_pred HHHHcCCcEEEeccccCcc--CHHHHHHHHHHHHHhCCCCeEEEE
Confidence 9999999998888766543 789999999999999866887654
No 26
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=96.27 E-value=0.12 Score=46.92 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=78.0
Q ss_pred HhhhcCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC------CCCHHHHHHHHHHHHhCC
Q psy9602 122 TLRMAPIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG------GTCFQEVVELAKHAESLN 189 (239)
Q Consensus 122 ~~~~~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGVg------~~St~eAIelar~A~~aG 189 (239)
+...+.+.. +-+..++++ ....|.+|-.+.+...++.++.....|.++.. ..+.+..+++++.+.++|
T Consensus 85 ~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g 164 (273)
T cd07941 85 QALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG 164 (273)
T ss_pred HHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCC
Confidence 334555554 446666664 46778888888888887776653456666322 346788899999999999
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 190 VHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 190 AdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
++.+.+...... . +++++.++++.+.+..|++||-++-.
T Consensus 165 ~~~i~l~DT~G~-~-~P~~v~~lv~~l~~~~~~~~l~~H~H 203 (273)
T cd07941 165 ADWLVLCDTNGG-T-LPHEIAEIVKEVRERLPGVPLGIHAH 203 (273)
T ss_pred CCEEEEecCCCC-C-CHHHHHHHHHHHHHhCCCCeeEEEec
Confidence 999887766543 3 78999999999999997788877543
No 27
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=96.00 E-value=0.19 Score=45.88 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=79.6
Q ss_pred hHHhhhcCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC---------CCCHHHHHHHHHH
Q psy9602 120 GITLRMAPIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---------GTCFQEVVELAKH 184 (239)
Q Consensus 120 ~v~~~~~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGVg---------~~St~eAIelar~ 184 (239)
+++..++.+.. +-++-+++| ....|.+|-.+.+...++.++.....|.+++. ..+.+..+++++.
T Consensus 78 dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~ 157 (274)
T cd07938 78 GAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAER 157 (274)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHH
Confidence 45666666655 447777776 35667778777777777776653455543322 3478999999999
Q ss_pred HHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 185 AESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 185 A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
+.++|+|.+-+....... ++.++.++++.+.+..|++||-++-
T Consensus 158 ~~~~Ga~~i~l~DT~G~~--~P~~v~~lv~~l~~~~~~~~i~~H~ 200 (274)
T cd07938 158 LLDLGCDEISLGDTIGVA--TPAQVRRLLEAVLERFPDEKLALHF 200 (274)
T ss_pred HHHcCCCEEEECCCCCcc--CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 999999998888766542 7899999999999998778887753
No 28
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=95.99 E-value=0.14 Score=48.74 Aligned_cols=108 Identities=17% Similarity=0.102 Sum_probs=79.6
Q ss_pred hhHHhhhcCCCC-EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEec---------CCCCHHHHHHHHH
Q psy9602 119 VGITLRMAPIID-QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQI---------GGTCFQEVVELAK 183 (239)
Q Consensus 119 ~~v~~~~~gg~g-lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGV---------g~~St~eAIelar 183 (239)
.+++..++.+.. +.++-+++|.+ ..|.+|-.+.+..+++.++.....|.+.+ +..+.+..+++++
T Consensus 125 ~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~ 204 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAK 204 (347)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHH
Confidence 456666776665 44555777654 47889988888888887765345664333 4457899999999
Q ss_pred HHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 184 HAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 184 ~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.+.++|+|.+.+....... ++.++.++++.|.+..|..||-++
T Consensus 205 ~~~~~Gad~I~l~DT~G~a--~P~~v~~lv~~l~~~~~~~~i~~H 247 (347)
T PLN02746 205 ELYDMGCYEISLGDTIGVG--TPGTVVPMLEAVMAVVPVDKLAVH 247 (347)
T ss_pred HHHHcCCCEEEecCCcCCc--CHHHHHHHHHHHHHhCCCCeEEEE
Confidence 9999999999888766543 789999999999998854465553
No 29
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.96 E-value=0.12 Score=46.75 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=71.0
Q ss_pred CCCCEEEeccccCCcCC-----------------------CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHH
Q psy9602 127 PIIDQMVNGTTGEGVSM-----------------------TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAK 183 (239)
Q Consensus 127 gg~glvV~GstGE~~sL-----------------------T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar 183 (239)
++.|.++.+|..+-... ..++..+.++..... . +.|+++.+...+.++..+.++
T Consensus 33 g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~--~-~~p~ivsi~g~~~~~~~~~a~ 109 (296)
T cd04740 33 GKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLRE--F-GTPVIASIAGSTVEEFVEVAE 109 (296)
T ss_pred CCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhc--C-CCcEEEEEecCCHHHHHHHHH
Confidence 44787777776654432 124444444443332 2 579999999999999999999
Q ss_pred HHHhCCCCEEEEC--CCCCC------CCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 184 HAESLNVHAVLCL--PELFF------TPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 184 ~A~~aGAdaVlV~--PP~y~------~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
.++++|+|++-+- -|..- .. +.+.+.+.+++|.+.+ ++||++==.|
T Consensus 110 ~~~~~G~d~iElN~~cP~~~~~g~~~~~-~~~~~~eiv~~vr~~~-~~Pv~vKl~~ 163 (296)
T cd04740 110 KLADAGADAIELNISCPNVKGGGMAFGT-DPEAVAEIVKAVKKAT-DVPVIVKLTP 163 (296)
T ss_pred HHHHcCCCEEEEECCCCCCCCCcccccC-CHHHHHHHHHHHHhcc-CCCEEEEeCC
Confidence 9999999999773 34431 12 6788889999999988 8999874333
No 30
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.73 E-value=0.25 Score=46.04 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC---CC---CCCCCCHHHHHHHHHHH
Q psy9602 143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP---EL---FFTPASVEDLVDYLRDV 216 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P---P~---y~~~~s~e~iv~yf~~V 216 (239)
...+...+.++.+.... +.||++++...+.++-.+.++.++++|+|++-+-- |. .+....++.+.+..++|
T Consensus 82 ~g~~~~~~~i~~~~~~~---~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v 158 (325)
T cd04739 82 LGPEEYLELIRRAKRAV---SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAV 158 (325)
T ss_pred cCHHHHHHHHHHHHhcc---CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHH
Confidence 34566666555544322 47999999999999999999999999999997743 21 11110124567888999
Q ss_pred HhhCCCCcEEEEeCCC
Q psy9602 217 GEAAPATPLFYYHIPM 232 (239)
Q Consensus 217 aeatpdLPIiLYN~P~ 232 (239)
.+++ ++||++==-|.
T Consensus 159 ~~~~-~iPv~vKl~p~ 173 (325)
T cd04739 159 KSAV-TIPVAVKLSPF 173 (325)
T ss_pred Hhcc-CCCEEEEcCCC
Confidence 8888 89999875554
No 31
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=95.48 E-value=0.18 Score=46.87 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=59.7
Q ss_pred eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHH
Q psy9602 134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLV 210 (239)
Q Consensus 134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv 210 (239)
+|+.+.-...+.+|..+=|+.++++..+.++-|++=+ ...+.+++|+.++.+.++|||++.+.-|. +.+++.
T Consensus 121 cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~-----~~~~i~ 195 (292)
T PRK11320 121 CGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMT-----ELEMYR 195 (292)
T ss_pred cCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCC-----CHHHHH
Confidence 4666555667999999999999998754234444422 23469999999999999999999986432 556655
Q ss_pred HHHHHHHhhCCCCcEE
Q psy9602 211 DYLRDVGEAAPATPLF 226 (239)
Q Consensus 211 ~yf~~VaeatpdLPIi 226 (239)
. ++++. +.|++
T Consensus 196 ~----~~~~~-~~Pl~ 206 (292)
T PRK11320 196 R----FADAV-KVPIL 206 (292)
T ss_pred H----HHHhc-CCCEE
Confidence 4 55556 57873
No 32
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=95.29 E-value=0.37 Score=44.65 Aligned_cols=86 Identities=12% Similarity=-0.037 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCC-CCEEEEC--CCCC-----CCCCCHHHHHHHH
Q psy9602 142 SMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLN-VHAVLCL--PELF-----FTPASVEDLVDYL 213 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aG-AdaVlV~--PP~y-----~~~~s~e~iv~yf 213 (239)
+...+++.+.++...+... +.|||+.+.+.+.++-.+.++.++++| ||++-+- -|+. +.. +.+.+.+..
T Consensus 73 n~g~~~~~~~i~~~~~~~~--~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~-d~~~~~~i~ 149 (310)
T PRK02506 73 NLGFDYYLDYVLELQKKGP--NKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAY-DFETTEQIL 149 (310)
T ss_pred CcCHHHHHHHHHHHHhhcC--CCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCcccccc-CHHHHHHHH
Confidence 3446677766665444332 489999999999999999999999998 9998863 2432 111 568889999
Q ss_pred HHHHhhCCCCcEEEEeCC
Q psy9602 214 RDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 214 ~~VaeatpdLPIiLYN~P 231 (239)
+.|.+.+ +.||++==-|
T Consensus 150 ~~v~~~~-~~Pv~vKlsp 166 (310)
T PRK02506 150 EEVFTYF-TKPLGVKLPP 166 (310)
T ss_pred HHHHHhc-CCccEEecCC
Confidence 9999988 7998874444
No 33
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=95.24 E-value=0.12 Score=46.55 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=67.4
Q ss_pred HHhhhcCC-CCEEE----eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC-----CCCHHHHHHHHHHHHhCCC
Q psy9602 121 ITLRMAPI-IDQMV----NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG-----GTCFQEVVELAKHAESLNV 190 (239)
Q Consensus 121 v~~~~~gg-~glvV----~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg-----~~St~eAIelar~A~~aGA 190 (239)
|....+.| .|+.+ .|+ +....++.+|..+=|+.++++..+.+.-|++=+- ..+.+++|+.++.+.++||
T Consensus 91 v~~~~~aG~agi~IEDq~~~~-~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGA 169 (238)
T PF13714_consen 91 VRELERAGAAGINIEDQRCGH-GGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGA 169 (238)
T ss_dssp HHHHHHCT-SEEEEESBSTTT-STT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHcCCcEEEeeccccCC-CCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCC
Confidence 34444444 45543 455 7777889999999999999998764555666443 3678999999999999999
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
|++++..+ . +.+++..+-+ +. +.|+.+--.|
T Consensus 170 D~ifi~~~----~-~~~~i~~~~~----~~-~~Pl~v~~~~ 200 (238)
T PF13714_consen 170 DMIFIPGL----Q-SEEEIERIVK----AV-DGPLNVNPGP 200 (238)
T ss_dssp SEEEETTS----S-SHHHHHHHHH----HH-SSEEEEETTS
T ss_pred CEEEeCCC----C-CHHHHHHHHH----hc-CCCEEEEcCC
Confidence 99998755 2 5667555444 44 4787765543
No 34
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.21 E-value=0.21 Score=45.61 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCCceEEEecCC-------CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--------CHHHHHHHH
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGG-------TCFQEVVELAKHAESLNVHAVLCLPELFFTPA--------SVEDLVDYL 213 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~-------~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--------s~e~iv~yf 213 (239)
.++++.+.+.++. ++||.+=++. .+.++++++++.+++.|+|.+-+....+..+. ....-.++.
T Consensus 195 ~eii~avr~~~g~-d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ 273 (327)
T cd02803 195 LEIVAAVREAVGP-DFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELA 273 (327)
T ss_pred HHHHHHHHHHcCC-CceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHH
Confidence 4666667766655 6788774442 46899999999999999999998876554321 124456778
Q ss_pred HHHHhhCCCCcEEE
Q psy9602 214 RDVGEAAPATPLFY 227 (239)
Q Consensus 214 ~~VaeatpdLPIiL 227 (239)
+.+.+.+ ++||+.
T Consensus 274 ~~ir~~~-~iPVi~ 286 (327)
T cd02803 274 EKIKKAV-KIPVIA 286 (327)
T ss_pred HHHHHHC-CCCEEE
Confidence 8888888 899876
No 35
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.20 E-value=0.23 Score=45.97 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=58.7
Q ss_pred eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHH
Q psy9602 134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLV 210 (239)
Q Consensus 134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv 210 (239)
+|+.+--...+.+|..+=|+.++++..+.++-|++=+ ...+.+++|+.++.+.++|||++.+.-| . +.+++.
T Consensus 116 cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~----~-~~e~i~ 190 (285)
T TIGR02317 116 CGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEAL----T-SLEEFR 190 (285)
T ss_pred cCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCC----C-CHHHHH
Confidence 4665544466999999999999998765223344422 3346999999999999999999999642 2 556654
Q ss_pred HHHHHHHhhCCCCcEE
Q psy9602 211 DYLRDVGEAAPATPLF 226 (239)
Q Consensus 211 ~yf~~VaeatpdLPIi 226 (239)
.++++. +.|++
T Consensus 191 ----~~~~~i-~~Pl~ 201 (285)
T TIGR02317 191 ----QFAKAV-KVPLL 201 (285)
T ss_pred ----HHHHhc-CCCEE
Confidence 555566 47873
No 36
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.14 E-value=0.37 Score=43.30 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=65.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEEC--CCCCCCC----CCHHHHHHHHH
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCL--PELFFTP----ASVEDLVDYLR 214 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~--PP~y~~~----~s~e~iv~yf~ 214 (239)
..+..++..+-++..... .. +.|+++.+...+.++.++.++.+++.|+|++-+- -|..... .+.+.+.+..+
T Consensus 78 ~~~g~~~~~~~i~~~~~~-~~-~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~ 155 (289)
T cd02810 78 PNLGLDVWLQDIAKAKKE-FP-GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLK 155 (289)
T ss_pred CCcCHHHHHHHHHHHHhc-cC-CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHH
Confidence 445667776666655443 12 5799999999999999999999999999999884 3443210 15678888899
Q ss_pred HHHhhCCCCcEEEEeCC
Q psy9602 215 DVGEAAPATPLFYYHIP 231 (239)
Q Consensus 215 ~VaeatpdLPIiLYN~P 231 (239)
+|.+.+ +.||++==.|
T Consensus 156 ~vr~~~-~~pv~vKl~~ 171 (289)
T cd02810 156 AVKAAV-DIPLLVKLSP 171 (289)
T ss_pred HHHHcc-CCCEEEEeCC
Confidence 999888 8998875444
No 37
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=95.10 E-value=0.59 Score=41.78 Aligned_cols=105 Identities=14% Similarity=0.050 Sum_probs=76.6
Q ss_pred HHhhhcCCCC-EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCC
Q psy9602 121 ITLRMAPIID-QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVH 191 (239)
Q Consensus 121 v~~~~~gg~g-lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAd 191 (239)
++...+.+.. +-+..+++|.+ ..|.+|-.+.+..+++.++.....|.++.. ..+.+..+++++.+.++|++
T Consensus 75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 154 (259)
T cd07939 75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGAD 154 (259)
T ss_pred HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCC
Confidence 3444555554 44777777753 567888776666666665543456666653 35589999999999999999
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.+.+.-..... +++++.++++.+.+..| +||-++
T Consensus 155 ~i~l~DT~G~~--~P~~v~~lv~~l~~~~~-~~l~~H 188 (259)
T cd07939 155 RLRFADTVGIL--DPFTTYELIRRLRAATD-LPLEFH 188 (259)
T ss_pred EEEeCCCCCCC--CHHHHHHHHHHHHHhcC-CeEEEE
Confidence 98888766533 78999999999999984 887664
No 38
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.03 E-value=0.24 Score=39.97 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=66.4
Q ss_pred hhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHH-HHHHHHhCCCCEEEECCCCCC
Q psy9602 123 LRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVE-LAKHAESLNVHAVLCLPELFF 201 (239)
Q Consensus 123 ~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIe-lar~A~~aGAdaVlV~PP~y~ 201 (239)
...++|.+++..+.......-......+++....+.. ++|+++++...+..+.+. .++.+.++|+|++.+.....+
T Consensus 20 ~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~ 96 (200)
T cd04722 20 AAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET---DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGY 96 (200)
T ss_pred HHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhc---CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCc
Confidence 3456677766555433222211111113445555443 479999998777666554 378999999999999875543
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 202 TPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 202 ~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
. .+.+.++.+.+.+..|++|+++.-.+.
T Consensus 97 ~---~~~~~~~~~~i~~~~~~~~v~~~~~~~ 124 (200)
T cd04722 97 L---AREDLELIRELREAVPDVKVVVKLSPT 124 (200)
T ss_pred H---HHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 3 366778888888876678888876553
No 39
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.90 E-value=0.32 Score=45.31 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=57.6
Q ss_pred eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHH
Q psy9602 134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLV 210 (239)
Q Consensus 134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv 210 (239)
+|+.+--..++.+|..+=|+.++++..+.++-|++=+ ...+.+++|+.++.+.++|||++.+.-| . +.+++.
T Consensus 120 cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~----~-~~~ei~ 194 (294)
T TIGR02319 120 CGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAM----L-DVEEMK 194 (294)
T ss_pred cCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCC----C-CHHHHH
Confidence 4555544567999999999999987654123444422 3457999999999999999999998532 2 667755
Q ss_pred HHHHHHHhhCCCCcE
Q psy9602 211 DYLRDVGEAAPATPL 225 (239)
Q Consensus 211 ~yf~~VaeatpdLPI 225 (239)
. ++++. +.|+
T Consensus 195 ~----~~~~~-~~P~ 204 (294)
T TIGR02319 195 R----VRDEI-DAPL 204 (294)
T ss_pred H----HHHhc-CCCe
Confidence 5 44455 4676
No 40
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=94.79 E-value=0.68 Score=41.60 Aligned_cols=96 Identities=16% Similarity=0.119 Sum_probs=71.0
Q ss_pred EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602 131 QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCLPELFFT 202 (239)
Q Consensus 131 lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~PP~y~~ 202 (239)
+-++.+++|.. ..|.+|-.+.+..+++.++.....|.++.- ..+.+..+++++.+.++|++.+.+.-.....
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~ 169 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYL 169 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 44666777764 677787666666666665542456666543 3578888999999999999999888766532
Q ss_pred CCCHHHHHHHHHHHHhhCCC--CcEEEE
Q psy9602 203 PASVEDLVDYLRDVGEAAPA--TPLFYY 228 (239)
Q Consensus 203 ~~s~e~iv~yf~~Vaeatpd--LPIiLY 228 (239)
+++++.++++.+.+..|+ +||-++
T Consensus 170 --~P~~v~~lv~~l~~~~~~~~i~l~~H 195 (268)
T cd07940 170 --TPEEFGELIKKLKENVPNIKVPISVH 195 (268)
T ss_pred --CHHHHHHHHHHHHHhCCCCceeEEEE
Confidence 789999999999999865 776554
No 41
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=94.64 E-value=0.79 Score=43.61 Aligned_cols=105 Identities=19% Similarity=0.129 Sum_probs=79.6
Q ss_pred HHhhhcCCCC-EEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCC
Q psy9602 121 ITLRMAPIID-QMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVH 191 (239)
Q Consensus 121 v~~~~~gg~g-lvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAd 191 (239)
++...+.+.. +-++.++++. ...|.+|-.+.+..+++.+......|.++. +..+.+..+++++.+.++|++
T Consensus 81 i~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~ 160 (378)
T PRK11858 81 IDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGAD 160 (378)
T ss_pred HHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCC
Confidence 4444555554 4577788885 678889988877777777664345666553 457789999999999999999
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.+.+...... . +++++.+.++.+.+.. ++||-++
T Consensus 161 ~I~l~DT~G~-~-~P~~v~~lv~~l~~~~-~~~l~~H 194 (378)
T PRK11858 161 RVRFCDTVGI-L-DPFTMYELVKELVEAV-DIPIEVH 194 (378)
T ss_pred EEEEeccCCC-C-CHHHHHHHHHHHHHhc-CCeEEEE
Confidence 9888876643 2 7899999999999998 7887665
No 42
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.62 E-value=1 Score=40.89 Aligned_cols=106 Identities=9% Similarity=0.060 Sum_probs=75.9
Q ss_pred hHHhhhcCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCC
Q psy9602 120 GITLRMAPIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNV 190 (239)
Q Consensus 120 ~v~~~~~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGA 190 (239)
+++...+.|.. +-++-+++| ....|.+|-.+.+..+++.+....+.|.+++ +..+.+...++++.+.++|+
T Consensus 76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~ 155 (262)
T cd07948 76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGV 155 (262)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCC
Confidence 34555565554 445556665 3457788877777767666554246666654 44568999999999999999
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
+.+.+....... +++++.++++.+.+.. ++||-++
T Consensus 156 ~~i~l~Dt~G~~--~P~~v~~~~~~~~~~~-~~~i~~H 190 (262)
T cd07948 156 NRVGIADTVGIA--TPRQVYELVRTLRGVV-SCDIEFH 190 (262)
T ss_pred CEEEECCcCCCC--CHHHHHHHHHHHHHhc-CCeEEEE
Confidence 998887765532 7899999999999988 5787554
No 43
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.33 E-value=0.93 Score=41.13 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCC--CCEEEE--CCCCC------CCCCCHHHHHHHH
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLN--VHAVLC--LPELF------FTPASVEDLVDYL 213 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aG--AdaVlV--~PP~y------~~~~s~e~iv~yf 213 (239)
..++..+.++...+.. ..|+++++.+.+.++..+.++..++++ +|++-+ .-|.. +.. +.+.+.+.+
T Consensus 74 g~~~~~~~~~~~~~~~---~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~-~~~~~~eiv 149 (300)
T TIGR01037 74 GVEAFLEELKPVREEF---PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQ-DPELSADVV 149 (300)
T ss_pred CHHHHHHHHHHHhccC---CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCcccccc-CHHHHHHHH
Confidence 4556555555433222 469999999999999999999999874 899988 33442 112 778899999
Q ss_pred HHHHhhCCCCcEEEEe
Q psy9602 214 RDVGEAAPATPLFYYH 229 (239)
Q Consensus 214 ~~VaeatpdLPIiLYN 229 (239)
+++.+++ ++||++==
T Consensus 150 ~~vr~~~-~~pv~vKi 164 (300)
T TIGR01037 150 KAVKDKT-DVPVFAKL 164 (300)
T ss_pred HHHHHhc-CCCEEEEC
Confidence 9999988 89988643
No 44
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.24 E-value=0.15 Score=46.15 Aligned_cols=64 Identities=25% Similarity=0.337 Sum_probs=51.3
Q ss_pred cCCCceEEEecCCCCHH--------HHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 160 KTHGFTVMVQIGGTCFQ--------EVVELAKHAESLNVHAVLCLP-ELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 160 ~G~rvpVIaGVg~~St~--------eAIelar~A~~aGAdaVlV~P-P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
.+ ++|||+-+-..|.. +..++|+.+++.||+++.++. |.||.. + +++++.+.+.+ ++||+..||
T Consensus 47 ~~-~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g-~----~~~l~~v~~~v-~iPvl~kdf 119 (260)
T PRK00278 47 AG-KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQG-S----LEYLRAARAAV-SLPVLRKDF 119 (260)
T ss_pred cC-CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCC-C----HHHHHHHHHhc-CCCEEeeee
Confidence 34 68999988543332 458999999999999999876 778876 5 67888888888 899998776
No 45
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.20 E-value=1.6 Score=40.08 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhC---CCCEEEECC--CCC-----CCCCCHHHHHHHH
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESL---NVHAVLCLP--ELF-----FTPASVEDLVDYL 213 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~a---GAdaVlV~P--P~y-----~~~~s~e~iv~yf 213 (239)
..+++.+.++......+....||++++.+. .++.++.++..++. |+|++-+-- |+. +.. +++.+.+..
T Consensus 72 g~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~-~~~~~~~i~ 149 (294)
T cd04741 72 GLDYYLEYIRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAY-DFDATLEYL 149 (294)
T ss_pred CHHHHHHHHHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccC-CHHHHHHHH
Confidence 355666655554432211157999999998 99999999999886 699998732 442 122 678999999
Q ss_pred HHHHhhCCCCcEEEEeCCC
Q psy9602 214 RDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 214 ~~VaeatpdLPIiLYN~P~ 232 (239)
++|.+++ ++||++==-|.
T Consensus 150 ~~v~~~~-~iPv~vKl~p~ 167 (294)
T cd04741 150 TAVKAAY-SIPVGVKTPPY 167 (294)
T ss_pred HHHHHhc-CCCEEEEeCCC
Confidence 9999998 89998755553
No 46
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.13 E-value=0.98 Score=39.50 Aligned_cols=83 Identities=24% Similarity=0.229 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEec---CC--CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHh
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQI---GG--TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGE 218 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGV---g~--~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vae 218 (239)
+.++-.+.+...++.++...+++.+.+ +. .+.++..++++.+.++|++.+.+..-.. .. +++++.++++.+.+
T Consensus 109 ~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G-~~-~P~~v~~li~~l~~ 186 (265)
T cd03174 109 SREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVG-LA-TPEEVAELVKALRE 186 (265)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcC-Cc-CHHHHHHHHHHHHH
Confidence 444444445444444443356666544 55 8899999999999999999999776543 34 89999999999999
Q ss_pred hCCCCcEEEE
Q psy9602 219 AAPATPLFYY 228 (239)
Q Consensus 219 atpdLPIiLY 228 (239)
..|++|+-++
T Consensus 187 ~~~~~~~~~H 196 (265)
T cd03174 187 ALPDVPLGLH 196 (265)
T ss_pred hCCCCeEEEE
Confidence 9866777754
No 47
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=93.89 E-value=1.5 Score=41.46 Aligned_cols=106 Identities=16% Similarity=0.028 Sum_probs=76.3
Q ss_pred HHhhhcCCCC-EEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCC
Q psy9602 121 ITLRMAPIID-QMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVH 191 (239)
Q Consensus 121 v~~~~~gg~g-lvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAd 191 (239)
++...+.+.. +-++.++++. ...|.+|=.+.+..+++.++.....|.++. +..+.+..+++++.+.++|++
T Consensus 78 i~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~ 157 (365)
T TIGR02660 78 IEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGAD 157 (365)
T ss_pred HHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcC
Confidence 3444555554 4477777763 557888877666666666654345666654 345689999999999999999
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
.+.+...... . +++++.++++.+.+.. ++||-++-
T Consensus 158 ~i~l~DT~G~-~-~P~~v~~lv~~l~~~~-~v~l~~H~ 192 (365)
T TIGR02660 158 RFRFADTVGI-L-DPFSTYELVRALRQAV-DLPLEMHA 192 (365)
T ss_pred EEEEcccCCC-C-CHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 9877765543 2 7899999999999988 68877653
No 48
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.84 E-value=0.59 Score=40.67 Aligned_cols=101 Identities=21% Similarity=0.230 Sum_probs=75.6
Q ss_pred cCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602 126 APIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCL 196 (239)
Q Consensus 126 ~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~ 196 (239)
+.+.. +-++-+.+| ....|.+|-.+.+..+++.++.....|.++. +..+.++.+++++.+.++|+|.+.+.
T Consensus 78 ~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 78 EAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp HTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred hccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee
Confidence 34544 447777777 3457778888888888777765456676765 55678999999999999999999888
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 197 PELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 197 PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.-.... +++++.++++.+.+..|++||-++
T Consensus 158 Dt~G~~--~P~~v~~lv~~~~~~~~~~~l~~H 187 (237)
T PF00682_consen 158 DTVGIM--TPEDVAELVRALREALPDIPLGFH 187 (237)
T ss_dssp ETTS-S---HHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CccCCc--CHHHHHHHHHHHHHhccCCeEEEE
Confidence 755432 789999999999999976887765
No 49
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=93.67 E-value=0.74 Score=44.39 Aligned_cols=88 Identities=13% Similarity=0.014 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecCC-CCHHHHHHHHHHHHhCCCCEEEEC--CCCCC---C-----CCCHHHHHHH
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQIGG-TCFQEVVELAKHAESLNVHAVLCL--PELFF---T-----PASVEDLVDY 212 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGVg~-~St~eAIelar~A~~aGAdaVlV~--PP~y~---~-----~~s~e~iv~y 212 (239)
..+++.+.++.+.+... .+|||+.+.. .+.++-.++++.+++.|||++-+- -|+.- . ..+.+.+.+.
T Consensus 96 g~~~~l~~i~~~k~~~~--~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i 173 (385)
T PLN02495 96 PFETMLAEFKQLKEEYP--DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEV 173 (385)
T ss_pred CHHHHHHHHHHHHhhCC--CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHH
Confidence 46777777666554432 5799999955 899999999999999999999863 35531 0 0156777777
Q ss_pred HHHHHhhCCCCcEEEEeCCCCc
Q psy9602 213 LRDVGEAAPATPLFYYHIPMFT 234 (239)
Q Consensus 213 f~~VaeatpdLPIiLYN~P~~T 234 (239)
.+.|-+.+ ++||++==-|..+
T Consensus 174 ~~~Vk~~~-~iPv~vKLsPn~t 194 (385)
T PLN02495 174 CGWINAKA-TVPVWAKMTPNIT 194 (385)
T ss_pred HHHHHHhh-cCceEEEeCCChh
Confidence 78888877 8999987666543
No 50
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=93.57 E-value=0.65 Score=41.92 Aligned_cols=73 Identities=16% Similarity=0.022 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCC------------------CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHH
Q psy9602 147 ERKLNLEAWMTEAKTHGFTVMVQIGG------------------TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVED 208 (239)
Q Consensus 147 ER~~li~~vve~~~G~rvpVIaGVg~------------------~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~ 208 (239)
|..+.++.+++. .++||+.++. .+.+++|+.++..+++|||++++--+ +.++
T Consensus 113 ~~~~~i~ai~~a----~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~------~~e~ 182 (240)
T cd06556 113 WHIETLQMLTAA----AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV------PVEL 182 (240)
T ss_pred HHHHHHHHHHHc----CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC------CHHH
Confidence 555566666553 5899998776 35789999999999999999999632 2344
Q ss_pred HHHHHHHHHhhCCCCcEEEEeCCCCc
Q psy9602 209 LVDYLRDVGEAAPATPLFYYHIPMFT 234 (239)
Q Consensus 209 iv~yf~~VaeatpdLPIiLYN~P~~T 234 (239)
+. .|.++. ++|++..=.|..|
T Consensus 183 ~~----~i~~~~-~~P~~~~gag~~~ 203 (240)
T cd06556 183 AK----QITEAL-AIPLAGIGAGSGT 203 (240)
T ss_pred HH----HHHHhC-CCCEEEEecCcCC
Confidence 33 456667 7998876555433
No 51
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.53 E-value=1.6 Score=39.65 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=59.7
Q ss_pred cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC-----------------
Q psy9602 138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF----------------- 200 (239)
Q Consensus 138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y----------------- 200 (239)
|+....+.+.-.++++.+.+.+ ++||++=++. +.++.+++++.++++|+|++.+..-..
T Consensus 135 g~~~~~~~~~~~eiv~~vr~~~---~~pv~vKl~~-~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~ 210 (301)
T PRK07259 135 GMAFGTDPELAYEVVKAVKEVV---KVPVIVKLTP-NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVT 210 (301)
T ss_pred ccccccCHHHHHHHHHHHHHhc---CCCEEEEcCC-CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCc
Confidence 5666667788888888888876 4799998774 456899999999999999998732100
Q ss_pred --CC-CCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 201 --FT-PASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 201 --~~-~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+. +.-..-.+++...+.+++ ++||+.
T Consensus 211 gg~sg~~~~p~~l~~v~~i~~~~-~ipvi~ 239 (301)
T PRK07259 211 GGLSGPAIKPIALRMVYQVYQAV-DIPIIG 239 (301)
T ss_pred CccCCcCcccccHHHHHHHHHhC-CCCEEE
Confidence 00 000112467778888888 899763
No 52
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=93.50 E-value=0.98 Score=41.90 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=56.8
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEec----CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHH
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQI----GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDV 216 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIaGV----g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~V 216 (239)
...+.+|..+-|+.++++..+.++-|++=+ ...+.+++|+.++.+.++|||++.+..|. . +.+++...-+.+
T Consensus 127 ~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~---~-~~~ei~~~~~~~ 202 (290)
T TIGR02321 127 ELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ---K-TPDEILAFVKSW 202 (290)
T ss_pred cccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC---C-CHHHHHHHHHhc
Confidence 346999999999999987544223344422 23467999999999999999999995322 2 678877776655
Q ss_pred HhhCCCCcEEEE
Q psy9602 217 GEAAPATPLFYY 228 (239)
Q Consensus 217 aeatpdLPIiLY 228 (239)
. . .+|+++-
T Consensus 203 ~--~-p~pv~~~ 211 (290)
T TIGR02321 203 P--G-KVPLVLV 211 (290)
T ss_pred C--C-CCCeEEe
Confidence 2 2 3688653
No 53
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=93.43 E-value=1.2 Score=40.73 Aligned_cols=83 Identities=18% Similarity=0.091 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEE---CCCCC--------CCCCCHHHHHHH
Q psy9602 145 TAERKLNLEAWMTEAKTHGFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLC---LPELF--------FTPASVEDLVDY 212 (239)
Q Consensus 145 ~eER~~li~~vve~~~G~rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV---~PP~y--------~~~~s~e~iv~y 212 (239)
.+++.+.++.+.+... ..|+|+.+.+. +.++-++.++.+++.|+|++-+ .|... +.. +++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~--~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~-~~~~~~~i 159 (299)
T cd02940 83 LEYWLKEIRELKKDFP--DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQ-DPELVEEI 159 (299)
T ss_pred HHHHHHHHHHHHhhCC--CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhcc-CHHHHHHH
Confidence 4555555554444332 36999999887 9999999999999999999988 33220 112 67889999
Q ss_pred HHHHHhhCCCCcEEEEeCC
Q psy9602 213 LRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 213 f~~VaeatpdLPIiLYN~P 231 (239)
.+.+.+.+ ++||++==-|
T Consensus 160 v~~v~~~~-~~Pv~vKl~~ 177 (299)
T cd02940 160 CRWVREAV-KIPVIAKLTP 177 (299)
T ss_pred HHHHHHhc-CCCeEEECCC
Confidence 99998888 8999875444
No 54
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=93.35 E-value=1.2 Score=43.42 Aligned_cols=114 Identities=11% Similarity=-0.041 Sum_probs=72.2
Q ss_pred HHHHHHhhHHhhhcCCCCEEEecc-ccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602 113 LTCMLLVGITLRMAPIIDQMVNGT-TGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAES 187 (239)
Q Consensus 113 ~~~~l~~~v~~~~~gg~glvV~Gs-tGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~ 187 (239)
+-+.++.-+.....||.+++=-=. ...-.+...+||...+..+++. ++. +.-..+++++.++++.++.++.+++
T Consensus 146 sp~~~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~-~~~y~~NiT~~~~~em~~ra~~~~~ 224 (414)
T cd08206 146 SPKEYARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGE-AKGHYLNITADTPEEMIKRAEFAKE 224 (414)
T ss_pred CHHHHHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCC-cceEEeccCCCcHHHHHHHHHHHHH
Confidence 333444434444556655542211 3455777889998877766554 444 4556668998889999999999999
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Q psy9602 188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTR 235 (239)
Q Consensus 188 aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG 235 (239)
+|+.++|+-+-.+- . .-+..+++..|+..+.|+-.|...|
T Consensus 225 ~G~~~~mv~~~~~G-~-------~~l~~l~~~~~~~~l~ih~HrA~~g 264 (414)
T cd08206 225 LGSVIVMVDGVTAG-W-------TAIQSARRWCPDNGLALHAHRAGHA 264 (414)
T ss_pred hCCcEEEEeeeccc-H-------HHHHHHHHhccccCeEEEEccccce
Confidence 99999999864331 1 1255566554444455555555444
No 55
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=93.29 E-value=2.2 Score=38.81 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 171 GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 171 g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
+..+.+..+++++.+.++|+|.+.+.-..... +++++.+.++.+.+.. ++||-++
T Consensus 144 ~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~--~P~~v~~lv~~l~~~~-~~~l~~H 198 (275)
T cd07937 144 PVHTLEYYVKLAKELEDMGADSICIKDMAGLL--TPYAAYELVKALKKEV-GLPIHLH 198 (275)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC--CHHHHHHHHHHHHHhC-CCeEEEE
Confidence 45678999999999999999999998876543 7899999999999998 5787754
No 56
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=93.27 E-value=1.9 Score=42.73 Aligned_cols=114 Identities=11% Similarity=-0.049 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHH
Q psy9602 108 AGLLLLTCMLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELA 182 (239)
Q Consensus 108 A~~~~~~~~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIela 182 (239)
|....+-+.++.-+.....||.+++=-= ..+.-.+...+||...+..+++. ++. +.-..+++++.++++.++.+
T Consensus 169 P~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~-~k~y~~NiT~~~~~em~~ra 247 (468)
T PRK04208 169 PKLGLSAKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGE-RKGHYLNVTAPTMEEMYKRA 247 (468)
T ss_pred cccCCCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCC-cceEEEecCCCCHHHHHHHH
Confidence 3333344444444444556666665221 23445577889998876666554 433 45567799998899999999
Q ss_pred HHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 183 KHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 183 r~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
+.+.+.|++++|+.+-.+ .. . .+...+..+... ++||..+
T Consensus 248 ~~~~e~G~~~~mv~~~~~-G~---~-~l~~l~~~~~~~-~l~IhaH 287 (468)
T PRK04208 248 EFAKELGSPIVMIDVVTA-GW---T-ALQSLREWCRDN-GLALHAH 287 (468)
T ss_pred HHHHHhCCCEEEEecccc-cc---H-HHHHHHHhhhcC-CcEEEec
Confidence 999999999999986443 22 1 234444443344 5666543
No 57
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=93.09 E-value=0.4 Score=40.91 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=49.1
Q ss_pred CceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+.-+.. +-...+.+..++.++.+.+.|+|++++.|+.. +.+...++.+.++ ++||+.+|.+
T Consensus 28 g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~------~~~~~~l~~~~~~--gIpvv~~d~~ 89 (257)
T PF13407_consen 28 GYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP------DSLAPFLEKAKAA--GIPVVTVDSD 89 (257)
T ss_dssp TCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSST------TTTHHHHHHHHHT--TSEEEEESST
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH------HHHHHHHHHHhhc--CceEEEEecc
Confidence 345555 78889999999999999999999999997543 3345667777665 7999999988
No 58
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=93.02 E-value=1.7 Score=42.30 Aligned_cols=86 Identities=13% Similarity=-0.067 Sum_probs=60.0
Q ss_pred HHHHHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHH----HhcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602 113 LTCMLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMT----EAKTHGFTVMVQIGGTCFQEVVELAKHAES 187 (239)
Q Consensus 113 ~~~~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve----~~~G~rvpVIaGVg~~St~eAIelar~A~~ 187 (239)
+-+.++.-+.....||.+++=-= ....-.+...+||...+..+++ .++. +.-..+++++. +++.++.++.+++
T Consensus 158 sp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~-~~~ya~NiT~~-~~em~~ra~~~~~ 235 (412)
T TIGR03326 158 STEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGE-RKEYLANITAP-VREMERRAELVAD 235 (412)
T ss_pred ChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCC-cceEEEEecCC-HHHHHHHHHHHHH
Confidence 44444444444556666665221 2445667788999988777764 4444 55567799876 8999999999999
Q ss_pred CCCCEEEECCCCC
Q psy9602 188 LNVHAVLCLPELF 200 (239)
Q Consensus 188 aGAdaVlV~PP~y 200 (239)
.|++++|+.+-.+
T Consensus 236 ~G~~~~mv~~~~~ 248 (412)
T TIGR03326 236 LGGQYVMVDVVVC 248 (412)
T ss_pred hCCCeEEEEeecc
Confidence 9999999986443
No 59
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=92.97 E-value=0.89 Score=39.66 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=59.3
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCCCCHHHHHHHHHHHHhCCCCEEEECCC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGGTCFQEVVELAKHAESLNVHAVLCLPE 198 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~~St~eAIelar~A~~aGAdaVlV~PP 198 (239)
+....+.|.+++-...++ -.+.++.+++.+ ++||++ |++..+.+++++.++.+.++||+++++...
T Consensus 149 ~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~ 216 (235)
T cd00958 149 ARIGAELGADIVKTKYTG---------DAESFKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRN 216 (235)
T ss_pred HHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechh
Confidence 344556677665332222 134466666654 467766 456678999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHH
Q psy9602 199 LFFTPASVEDLVDYLRDV 216 (239)
Q Consensus 199 ~y~~~~s~e~iv~yf~~V 216 (239)
.+..+ ++.+..+-++.+
T Consensus 217 i~~~~-dp~~~~~~~~~~ 233 (235)
T cd00958 217 IFQRP-DPVAMLRAISAV 233 (235)
T ss_pred hhcCC-CHHHHHHHHHHH
Confidence 88777 888888877765
No 60
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.95 E-value=2.5 Score=37.89 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecCC-CCHHHHHHHHHHHHhCCCCEEEECCCCC-------------------CCC
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQIGG-TCFQEVVELAKHAESLNVHAVLCLPELF-------------------FTP 203 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGVg~-~St~eAIelar~A~~aGAdaVlV~PP~y-------------------~~~ 203 (239)
..+.-.++++.+.+.+ ++||++.++. .+.++..++++.++++|+|++.+..-.+ +..
T Consensus 146 ~~~~~~eiv~~vr~~~---~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg 222 (289)
T cd02810 146 DPEAVANLLKAVKAAV---DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSG 222 (289)
T ss_pred CHHHHHHHHHHHHHcc---CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCc
Confidence 4555667888888766 4799998874 4566899999999999999999863110 000
Q ss_pred -CCHHHHHHHHHHHHhhCC-CCcEEE
Q psy9602 204 -ASVEDLVDYLRDVGEAAP-ATPLFY 227 (239)
Q Consensus 204 -~s~e~iv~yf~~Vaeatp-dLPIiL 227 (239)
....--.++.+.+.+..| ++||+.
T Consensus 223 ~~~~~~~~~~v~~i~~~~~~~ipiia 248 (289)
T cd02810 223 APIRPLALRWVARLAARLQLDIPIIG 248 (289)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 001224778888888875 688764
No 61
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.89 E-value=2.4 Score=38.34 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=57.8
Q ss_pred cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC------------------
Q psy9602 138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL------------------ 199 (239)
Q Consensus 138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~------------------ 199 (239)
|..+.-+.+.-.++++.+.+.+ ++||++-++. +.++..++++.++++|+|++.+..-.
T Consensus 132 g~~~~~~~~~~~eiv~~vr~~~---~~Pv~vKl~~-~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~ 207 (296)
T cd04740 132 GMAFGTDPEAVAEIVKAVKKAT---DVPVIVKLTP-NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVT 207 (296)
T ss_pred cccccCCHHHHHHHHHHHHhcc---CCCEEEEeCC-CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCc
Confidence 4445556666678888888776 4799998864 45589999999999999999874210
Q ss_pred -CCC-CCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 200 -FFT-PASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 200 -y~~-~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
.+. +....--.++.+.+.+.+ ++||+.
T Consensus 208 gg~sg~~~~~~~~~~i~~i~~~~-~ipii~ 236 (296)
T cd04740 208 GGLSGPAIKPIALRMVYQVYKAV-EIPIIG 236 (296)
T ss_pred ceecCcccchHHHHHHHHHHHhc-CCCEEE
Confidence 000 001112457778888888 799874
No 62
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.64 Score=44.17 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=51.6
Q ss_pred hcCCCC-EEEecc--ccCC--cCCCHHHHHHHHHHHHHHhcCCCceEEEecC--CCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602 125 MAPIID-QMVNGT--TGEG--VSMTTAERKLNLEAWMTEAKTHGFTVMVQIG--GTCFQEVVELAKHAESLNVHAVLCLP 197 (239)
Q Consensus 125 ~~gg~g-lvV~Gs--tGE~--~sLT~eER~~li~~vve~~~G~rvpVIaGVg--~~St~eAIelar~A~~aGAdaVlV~P 197 (239)
++.|.+ +++++. ++-. ..+|.+|..+.++.+-+..+ ++-|.+.+. ....+...+..+.+.+.|+|+|.+..
T Consensus 23 i~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gk--k~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~D 100 (347)
T COG0826 23 IAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGK--KVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVAD 100 (347)
T ss_pred HHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCC--eEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcC
Confidence 455555 445433 3333 45999999999999887643 456666553 33455568899999999999999997
Q ss_pred CC
Q psy9602 198 EL 199 (239)
Q Consensus 198 P~ 199 (239)
|.
T Consensus 101 pg 102 (347)
T COG0826 101 PG 102 (347)
T ss_pred HH
Confidence 76
No 63
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.58 E-value=1 Score=42.23 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHHhcC---CCceEEEecCC-------CCHHHHHHHHHHHHhCC-CCEEEECCCCCCC---------C
Q psy9602 144 TTAERKLNLEAWMTEAKT---HGFTVMVQIGG-------TCFQEVVELAKHAESLN-VHAVLCLPELFFT---------P 203 (239)
Q Consensus 144 T~eER~~li~~vve~~~G---~rvpVIaGVg~-------~St~eAIelar~A~~aG-AdaVlV~PP~y~~---------~ 203 (239)
|.+.|.+++..+++.+.. .+++|.+=++. .+.++++++++..+++| +|.+-|.-..+.. +
T Consensus 186 slenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~ 265 (343)
T cd04734 186 SLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPS 265 (343)
T ss_pred CHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCC
Confidence 467776665555554433 04455543332 46899999999999998 8999885322111 0
Q ss_pred C--CHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 204 A--SVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 204 ~--s~e~iv~yf~~VaeatpdLPIiL 227 (239)
. ...-...+.+.+.+.+ ++||+.
T Consensus 266 ~~~~~~~~~~~~~~ik~~~-~ipvi~ 290 (343)
T cd04734 266 MGMPPGPFLPLAARIKQAV-DLPVFH 290 (343)
T ss_pred CCCCcchhHHHHHHHHHHc-CCCEEe
Confidence 0 1122355667777777 789775
No 64
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=92.58 E-value=2.9 Score=41.71 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=75.2
Q ss_pred hcCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC------CCCHHHHHHHHHHHHhCCCCE
Q psy9602 125 MAPIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG------GTCFQEVVELAKHAESLNVHA 192 (239)
Q Consensus 125 ~~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGVg------~~St~eAIelar~A~~aGAda 192 (239)
.+.+.. +-++.++++ ....|.+|-.+.+..+++.++.....|.++.- ..+.+..+++++.+.++||+.
T Consensus 95 ~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~ 174 (524)
T PRK12344 95 LDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADW 174 (524)
T ss_pred HhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCe
Confidence 444544 336556664 45688899999888888887764456655433 345778899999999999999
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 193 VlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
+.+..-..+. +++++.++++.+.+.. ++||-++-
T Consensus 175 i~l~DTvG~~--~P~~v~~li~~l~~~~-~v~i~~H~ 208 (524)
T PRK12344 175 VVLCDTNGGT--LPHEVAEIVAEVRAAP-GVPLGIHA 208 (524)
T ss_pred EEEccCCCCc--CHHHHHHHHHHHHHhc-CCeEEEEE
Confidence 8876654432 7899999999999998 78887653
No 65
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.45 E-value=1.3 Score=41.13 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=54.7
Q ss_pred CHHHHHHH----HHHHHHHhcCCCceEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--------
Q psy9602 144 TTAERKLN----LEAWMTEAKTHGFTVMVQIG-------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPA-------- 204 (239)
Q Consensus 144 T~eER~~l----i~~vve~~~G~rvpVIaGVg-------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~-------- 204 (239)
|.+.|.++ ++.+.+.++. ++||.+=++ +.+.++++++++..+++|+|.+-|..-.+..+.
T Consensus 194 slenR~rf~~EiI~aIR~avG~-d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~ 272 (338)
T cd04733 194 SLENRARLLLEIYDAIRAAVGP-GFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKES 272 (338)
T ss_pred CHHHHHHHHHHHHHHHHHHcCC-CCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCC
Confidence 56777664 4555555544 577777553 468899999999999999999987542221110
Q ss_pred --C-HHHHHHHHHHHHhhCCCCcEEE
Q psy9602 205 --S-VEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 205 --s-~e~iv~yf~~VaeatpdLPIiL 227 (239)
. +.-..++.+.|.+++ ++||+.
T Consensus 273 ~~~~~~~~~~~~~~ik~~v-~iPVi~ 297 (338)
T cd04733 273 TIAREAYFLEFAEKIRKVT-KTPLMV 297 (338)
T ss_pred ccccchhhHHHHHHHHHHc-CCCEEE
Confidence 0 111256677888888 899876
No 66
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=92.41 E-value=2.6 Score=39.86 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=74.5
Q ss_pred HHhhhcCCCC-EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCC
Q psy9602 121 ITLRMAPIID-QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVH 191 (239)
Q Consensus 121 v~~~~~gg~g-lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAd 191 (239)
++...+.+.. +-++-++++.. ..|.+|-.+.+..+++.++.....|.++. +..+.+..++.++.+.++|++
T Consensus 77 i~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~ 156 (363)
T TIGR02090 77 IDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGAD 156 (363)
T ss_pred HHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCC
Confidence 3444555554 44666666653 46777777766666666554345565554 456789999999999999999
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.+.+...... . +++++.+.++.+.+.. ++||-++
T Consensus 157 ~i~l~DT~G~-~-~P~~v~~li~~l~~~~-~~~l~~H 190 (363)
T TIGR02090 157 RINIADTVGV-L-TPQKMEELIKKLKENV-KLPISVH 190 (363)
T ss_pred EEEEeCCCCc-c-CHHHHHHHHHHHhccc-CceEEEE
Confidence 9888876543 2 7899999999999988 5776554
No 67
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.39 E-value=2.5 Score=39.79 Aligned_cols=98 Identities=16% Similarity=0.092 Sum_probs=65.1
Q ss_pred HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE---ecCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602 121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV---QIGGTCFQEVVELAKHAESLNVHAVLCL 196 (239)
Q Consensus 121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa---GVg~~St~eAIelar~A~~aGAdaVlV~ 196 (239)
++...+.+.+.+ +.-+..|. +.-.+.++.+.+. ...|.+ -.+..+.+..+++++.+.+.|++.+.+.
T Consensus 94 l~~a~~~gvd~iri~~~~~e~-----~~~~~~i~~ak~~----G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~ 164 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEA-----DVSEQHIGLAREL----GMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV 164 (337)
T ss_pred HHHHHHcCCCEEEEEEecchH-----HHHHHHHHHHHHC----CCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 344455566543 54444442 2233344444332 234433 3355678999999999999999999888
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC-CCCcEEEEe
Q psy9602 197 PELFFTPASVEDLVDYLRDVGEAA-PATPLFYYH 229 (239)
Q Consensus 197 PP~y~~~~s~e~iv~yf~~Vaeat-pdLPIiLYN 229 (239)
-..... .++++.++++.+-+.. |++||-++-
T Consensus 165 DT~G~~--~P~~v~~~v~~l~~~l~~~i~ig~H~ 196 (337)
T PRK08195 165 DSAGAL--LPEDVRDRVRALRAALKPDTQVGFHG 196 (337)
T ss_pred CCCCCC--CHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 876533 7899999999999987 578887753
No 68
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=92.31 E-value=2.1 Score=37.32 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=61.4
Q ss_pred HHhhhcCCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC--------CCHHHHHHH-HHHHHhCCC
Q psy9602 121 ITLRMAPIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG--------TCFQEVVEL-AKHAESLNV 190 (239)
Q Consensus 121 v~~~~~gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~--------~St~eAIel-ar~A~~aGA 190 (239)
++..++.|.. +.+.-..| .++.+|..+.++.+++.+.+..+|+|+-+.. .+. +.++. ++.|.++||
T Consensus 82 v~~a~~~Ga~~v~~~~~~~---~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~-~~i~~~~~~a~~~Ga 157 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVG---SEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDP-DLIAYAARIGAELGA 157 (235)
T ss_pred HHHHHHCCCCEEEEEEecC---CchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCH-HHHHHHHHHHHHHCC
Confidence 4444565553 42222233 3346788888888888766557999986533 233 45554 899999999
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
|.+-+.+| . + .+.++.+.+.+ .+||++-
T Consensus 158 D~Ik~~~~----~-~----~~~~~~i~~~~-~~pvv~~ 185 (235)
T cd00958 158 DIVKTKYT----G-D----AESFKEVVEGC-PVPVVIA 185 (235)
T ss_pred CEEEecCC----C-C----HHHHHHHHhcC-CCCEEEe
Confidence 99988422 1 2 45688888888 6998653
No 69
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=92.17 E-value=2.2 Score=42.62 Aligned_cols=99 Identities=10% Similarity=-0.002 Sum_probs=73.3
Q ss_pred hhhcCCCC-EEEeccccC-----CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC------CCCHHHHHHHHHHHHhCCC
Q psy9602 123 LRMAPIID-QMVNGTTGE-----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG------GTCFQEVVELAKHAESLNV 190 (239)
Q Consensus 123 ~~~~gg~g-lvV~GstGE-----~~sLT~eER~~li~~vve~~~G~rvpVIaGVg------~~St~eAIelar~A~~aGA 190 (239)
...+.+.. +-++.++++ ....|.+|-.+.+..+++.++.....|..+.. ..+.+.+++.++.+.++|+
T Consensus 89 a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGa 168 (526)
T TIGR00977 89 ALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGA 168 (526)
T ss_pred HHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCC
Confidence 33455554 446677765 45678999999988888877653345544332 4678999999999999999
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCc
Q psy9602 191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATP 224 (239)
Q Consensus 191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLP 224 (239)
+.+.+.....+. ++.++.+.++.+.+.+| .+
T Consensus 169 d~i~i~DTvG~~--~P~~v~~li~~l~~~~~-~~ 199 (526)
T TIGR00977 169 DWLVLCDTNGGT--LPHEISEITTKVKRSLK-QP 199 (526)
T ss_pred CeEEEecCCCCc--CHHHHHHHHHHHHHhCC-CC
Confidence 999888655433 78999999999999984 44
No 70
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=92.02 E-value=1.5 Score=39.79 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=60.3
Q ss_pred cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC--------C-------
Q psy9602 138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF--------T------- 202 (239)
Q Consensus 138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~--------~------- 202 (239)
|..+.-+.+.-.++++.+.+.+ ++||++=+. .+.++.+++++.++++|+|++.+..-.+- .
T Consensus 135 g~~l~~~~~~~~eiv~~vr~~~---~~pv~vKi~-~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR01037 135 GIAIGQDPELSADVVKAVKDKT---DVPVFAKLS-PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKT 210 (300)
T ss_pred ccccccCHHHHHHHHHHHHHhc---CCCEEEECC-CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCC
Confidence 5556667788888888888876 479998776 36678999999999999999998531110 0
Q ss_pred -CCCHHH----HHHHHHHHHhhCCCCcEEE
Q psy9602 203 -PASVED----LVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 203 -~~s~e~----iv~yf~~VaeatpdLPIiL 227 (239)
..+-.. -+++...+.+++ ++||+.
T Consensus 211 gg~sg~~~~~~~l~~v~~i~~~~-~ipvi~ 239 (300)
T TIGR01037 211 GGLSGPAIKPIALRMVYDVYKMV-DIPIIG 239 (300)
T ss_pred ccccchhhhHHHHHHHHHHHhcC-CCCEEE
Confidence 001111 247778888888 799874
No 71
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.95 E-value=0.96 Score=38.59 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 150 LNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 150 ~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
++++..... +.++|+|+. + .+.+..|.+.|||.+.+.| . +.. ..+|++.+....|++|++.
T Consensus 88 ~~~~~~~~~----~~~~i~gv~--t----~~e~~~A~~~Gad~i~~~p---~---~~~-g~~~~~~l~~~~~~~p~~a 148 (190)
T cd00452 88 EVVKAANRA----GIPLLPGVA--T----PTEIMQALELGADIVKLFP---A---EAV-GPAYIKALKGPFPQVRFMP 148 (190)
T ss_pred HHHHHHHHc----CCcEECCcC--C----HHHHHHHHHCCCCEEEEcC---C---ccc-CHHHHHHHHhhCCCCeEEE
Confidence 355544432 579999888 3 3556777889999999854 1 222 5678888887776678764
No 72
>PRK00915 2-isopropylmalate synthase; Validated
Probab=91.89 E-value=3.5 Score=40.92 Aligned_cols=96 Identities=11% Similarity=-0.007 Sum_probs=74.9
Q ss_pred EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602 131 QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFFT 202 (239)
Q Consensus 131 lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~~ 202 (239)
+.++.++++.+ ..|.+|-.+.+..+++.++.....|.++. +..+.+.++++++.+.++||+.+.+.....+.
T Consensus 96 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~ 175 (513)
T PRK00915 96 IHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYT 175 (513)
T ss_pred EEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCC
Confidence 55777887765 77889988888888777765445666665 34668889999999999999998887766543
Q ss_pred CCCHHHHHHHHHHHHhhCCC---CcEEEE
Q psy9602 203 PASVEDLVDYLRDVGEAAPA---TPLFYY 228 (239)
Q Consensus 203 ~~s~e~iv~yf~~Vaeatpd---LPIiLY 228 (239)
+++++.++++.+.+..|+ +||-++
T Consensus 176 --~P~~~~~~i~~l~~~~~~~~~v~l~~H 202 (513)
T PRK00915 176 --TPEEFGELIKTLRERVPNIDKAIISVH 202 (513)
T ss_pred --CHHHHHHHHHHHHHhCCCcccceEEEE
Confidence 789999999999998854 777664
No 73
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=91.86 E-value=0.75 Score=43.18 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhcCCCc---eEEEecC----------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHH
Q psy9602 145 TAERKLNLEAWMTEAKTHGF---TVMVQIG----------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVD 211 (239)
Q Consensus 145 ~eER~~li~~vve~~~G~rv---pVIaGVg----------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~ 211 (239)
.+.|.+++..+++.+.. .+ +|.+=++ +.+.++.+++++..++.|+|.+-|....+... ...-...
T Consensus 198 lenR~rf~~eii~air~-~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~ 275 (338)
T cd02933 198 IENRARFLLEVVDAVAE-AIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPD 275 (338)
T ss_pred HHHhhhHHHHHHHHHHH-HhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchH
Confidence 45677666666665543 22 4544332 34779999999999999999999966544332 2234556
Q ss_pred HHHHHHhhCCCCcEEEE
Q psy9602 212 YLRDVGEAAPATPLFYY 228 (239)
Q Consensus 212 yf~~VaeatpdLPIiLY 228 (239)
+.+.|.+.+ ++||+.-
T Consensus 276 ~~~~ik~~~-~ipvi~~ 291 (338)
T cd02933 276 FLDFLRKAF-KGPLIAA 291 (338)
T ss_pred HHHHHHHHc-CCCEEEE
Confidence 677777878 7998863
No 74
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=91.83 E-value=1.8 Score=41.54 Aligned_cols=85 Identities=13% Similarity=0.012 Sum_probs=55.7
Q ss_pred HHHHHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHH----HhcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602 113 LTCMLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMT----EAKTHGFTVMVQIGGTCFQEVVELAKHAES 187 (239)
Q Consensus 113 ~~~~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve----~~~G~rvpVIaGVg~~St~eAIelar~A~~ 187 (239)
+-+.++.-+.....+|.+++=-= ....-.+...+||...+..+++ .++. +.-..+++++.. ++.++.++.+++
T Consensus 141 sp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~-~~~y~~NiT~~~-~em~~ra~~~~~ 218 (366)
T cd08148 141 NPKYTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGE-KKLYAVNVTAGT-FEIIERAERALE 218 (366)
T ss_pred CHHHHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCC-cceEEEEccCCH-HHHHHHHHHHHH
Confidence 33444444444455665554211 2345567788999655555444 4544 455667888654 999999999999
Q ss_pred CCCCEEEECCCC
Q psy9602 188 LNVHAVLCLPEL 199 (239)
Q Consensus 188 aGAdaVlV~PP~ 199 (239)
.|++++|+.+-.
T Consensus 219 ~G~~~~mv~~~~ 230 (366)
T cd08148 219 LGANMLMVDVLT 230 (366)
T ss_pred hCCCEEEEeccc
Confidence 999999998644
No 75
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=91.78 E-value=3.4 Score=37.01 Aligned_cols=97 Identities=20% Similarity=0.139 Sum_probs=63.9
Q ss_pred HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe---cCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602 121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ---IGGTCFQEVVELAKHAESLNVHAVLCL 196 (239)
Q Consensus 121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG---Vg~~St~eAIelar~A~~aGAdaVlV~ 196 (239)
++...+.+.+.+ +.-+.+|. ++-.+.++.+.+. ...|.++ ++..+.+..+++++.+.++|+|.+.+.
T Consensus 91 i~~a~~~g~~~iri~~~~s~~-----~~~~~~i~~ak~~----G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 161 (263)
T cd07943 91 LKMAADLGVDVVRVATHCTEA-----DVSEQHIGAARKL----GMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVT 161 (263)
T ss_pred HHHHHHcCCCEEEEEechhhH-----HHHHHHHHHHHHC----CCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 444455555543 54455543 2333344444432 3445444 466789999999999999999998776
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 197 PELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 197 PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
-... .. +++++.++++.+.+..|..||-++
T Consensus 162 DT~G-~~-~P~~v~~lv~~l~~~~~~~~l~~H 191 (263)
T cd07943 162 DSAG-AM-LPDDVRERVRALREALDPTPVGFH 191 (263)
T ss_pred CCCC-Cc-CHHHHHHHHHHHHHhCCCceEEEE
Confidence 6554 33 789999999999999843377664
No 76
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=91.72 E-value=1.2 Score=41.60 Aligned_cols=86 Identities=9% Similarity=0.078 Sum_probs=59.5
Q ss_pred cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe--cCCCCHHHHHHHHHHHHhCCCCEEEECCCCC---CCCCCHHHHHHH
Q psy9602 138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ--IGGTCFQEVVELAKHAESLNVHAVLCLPELF---FTPASVEDLVDY 212 (239)
Q Consensus 138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaG--Vg~~St~eAIelar~A~~aGAdaVlV~PP~y---~~~~s~e~iv~y 212 (239)
|.+..-..+--.++++.+.+.++. ++||.+= ++..+.++.+++++.++++|+|.+.|.+=.. |.. . ..=.++
T Consensus 109 Gs~Ll~~~~~~~eiv~avr~~~~~-~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g-~-~~~~~~ 185 (312)
T PRK10550 109 GATLLKDPELIYQGAKAMREAVPA-HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRA-E-HINWQA 185 (312)
T ss_pred chHhhcCHHHHHHHHHHHHHhcCC-CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCC-C-cccHHH
Confidence 444445566667777888877754 5788874 4555667799999999999999999986331 111 1 101367
Q ss_pred HHHHHhhCCCCcEEE
Q psy9602 213 LRDVGEAAPATPLFY 227 (239)
Q Consensus 213 f~~VaeatpdLPIiL 227 (239)
++.|.+++ ++||+.
T Consensus 186 i~~ik~~~-~iPVi~ 199 (312)
T PRK10550 186 IGEIRQRL-TIPVIA 199 (312)
T ss_pred HHHHHhhc-CCcEEE
Confidence 88888888 899753
No 77
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=91.70 E-value=5.5 Score=36.09 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEe---cCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy9602 145 TAERKLNLEAWMTEAKTHGFTVMVQ---IGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAP 221 (239)
Q Consensus 145 ~eER~~li~~vve~~~G~rvpVIaG---Vg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatp 221 (239)
.++-.+.++.+.+. ...|.++ ++..+.+..+++++.+.++|++.+.+.-..... +++++.++++.+.+..+
T Consensus 108 ~~~~~~~i~~ak~~----G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~--~P~~v~~lv~~l~~~~~ 181 (266)
T cd07944 108 FDEALPLIKAIKEK----GYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSM--YPEDIKRIISLLRSNLD 181 (266)
T ss_pred HHHHHHHHHHHHHC----CCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCC--CHHHHHHHHHHHHHhcC
Confidence 34444444444433 3566665 455789999999999999999999998876533 78999999999999884
Q ss_pred C-CcEEEE
Q psy9602 222 A-TPLFYY 228 (239)
Q Consensus 222 d-LPIiLY 228 (239)
+ +||-++
T Consensus 182 ~~~~i~~H 189 (266)
T cd07944 182 KDIKLGFH 189 (266)
T ss_pred CCceEEEE
Confidence 2 887764
No 78
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=91.68 E-value=2.6 Score=40.35 Aligned_cols=86 Identities=13% Similarity=-0.007 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEECC--CC-C--------CCCCCHHHHH
Q psy9602 143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLCLP--EL-F--------FTPASVEDLV 210 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV~P--P~-y--------~~~~s~e~iv 210 (239)
...+++.+.++.+.+... +.|||+++.+. +.++..+.++.+++.|+|++-+-- |. . +.. +++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~--~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~-~~~~~~ 157 (420)
T PRK08318 81 RPLEVNLREIRRVKRDYP--DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQ-VPELVE 157 (420)
T ss_pred cCHHHHHHHHHHHHhhCC--CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccC-CHHHHH
Confidence 345666666666554442 47999999888 889999999999999999998732 33 1 112 678899
Q ss_pred HHHHHHHhhCCCCcEEEEeCCC
Q psy9602 211 DYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 211 ~yf~~VaeatpdLPIiLYN~P~ 232 (239)
+..+++.+.+ ++||++==-|.
T Consensus 158 ~i~~~v~~~~-~~Pv~vKl~p~ 178 (420)
T PRK08318 158 MYTRWVKRGS-RLPVIVKLTPN 178 (420)
T ss_pred HHHHHHHhcc-CCcEEEEcCCC
Confidence 9999999888 89998755553
No 79
>PRK15063 isocitrate lyase; Provisional
Probab=91.65 E-value=1.9 Score=42.34 Aligned_cols=94 Identities=18% Similarity=0.279 Sum_probs=65.8
Q ss_pred eccccCCcCCCHHHHHHHHHHHHHHhcCCCceE--EEecCC-------------------------------CCHHHHHH
Q psy9602 134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV--MVQIGG-------------------------------TCFQEVVE 180 (239)
Q Consensus 134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpV--IaGVg~-------------------------------~St~eAIe 180 (239)
+|+.+=--..+.+|..+=|++++.+.+..++|. |+=+-+ .+++++|+
T Consensus 190 CGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~ 269 (428)
T PRK15063 190 CGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIA 269 (428)
T ss_pred cCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccccccccccccccCCCccccccccccCHHHHHH
Confidence 577765557899999999888887654212343 333323 46899999
Q ss_pred HHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC-CCC
Q psy9602 181 LAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI-PMF 233 (239)
Q Consensus 181 lar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~-P~~ 233 (239)
.++.+.+ |||.+.+-... + +.+++..+-+.|....| ..++.||. |.+
T Consensus 270 Ra~AYa~-GAD~iw~Et~~---~-d~ee~~~fa~~v~~~~P-~~~layn~sPsf 317 (428)
T PRK15063 270 RGLAYAP-YADLIWCETST---P-DLEEARRFAEAIHAKFP-GKLLAYNCSPSF 317 (428)
T ss_pred HHHHHhc-CCCEEEeCCCC---C-CHHHHHHHHHhhcccCc-cceeecCCCCCc
Confidence 9999999 99999886422 4 77888888888765443 23788886 543
No 80
>PRK09389 (R)-citramalate synthase; Provisional
Probab=91.26 E-value=4.3 Score=40.21 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=76.2
Q ss_pred HhhhcCCCC-EEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCE
Q psy9602 122 TLRMAPIID-QMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHA 192 (239)
Q Consensus 122 ~~~~~gg~g-lvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAda 192 (239)
+..++.+.. +-++..+++. ...|.+|-.+.+..+++.++.....|.++. +..+.+.+++.++.+.++|++.
T Consensus 80 ~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~ 159 (488)
T PRK09389 80 DAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADR 159 (488)
T ss_pred HHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCE
Confidence 334455554 4577788877 468889988888888877665334555543 3456788899999999999999
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 193 VlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
+.+....... ++.++.+.++.|.+.. ++||-++
T Consensus 160 i~l~DTvG~~--~P~~~~~lv~~l~~~~-~v~l~~H 192 (488)
T PRK09389 160 ICFCDTVGIL--TPEKTYELFKRLSELV-KGPVSIH 192 (488)
T ss_pred EEEecCCCCc--CHHHHHHHHHHHHhhc-CCeEEEE
Confidence 8776655432 7899999999999887 6887764
No 81
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=91.13 E-value=2 Score=40.26 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=52.1
Q ss_pred CHHHHHHH----HHHHHHHhcCCCceEEEec-------CCCCHHHHHHHHHHHHhCCCCEEEECC-----CCCCC--CCC
Q psy9602 144 TTAERKLN----LEAWMTEAKTHGFTVMVQI-------GGTCFQEVVELAKHAESLNVHAVLCLP-----ELFFT--PAS 205 (239)
Q Consensus 144 T~eER~~l----i~~vve~~~G~rvpVIaGV-------g~~St~eAIelar~A~~aGAdaVlV~P-----P~y~~--~~s 205 (239)
|.+.|.++ ++.+.+.++. +++|.+=+ +..+.++++++++..+++|+|.+-|.. |.... ...
T Consensus 182 slenR~r~~~eiv~aIR~~vG~-d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~ 260 (353)
T cd02930 182 SFENRMRFPVEIVRAVRAAVGE-DFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVP 260 (353)
T ss_pred CHHHHhHHHHHHHHHHHHHcCC-CceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCC
Confidence 34555544 5555555544 56665322 235889999999999999999998842 21100 001
Q ss_pred HHHHHHHHHHHHhhCCCCcEEE
Q psy9602 206 VEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 206 ~e~iv~yf~~VaeatpdLPIiL 227 (239)
+.....+.+.|.+.+ ++||+.
T Consensus 261 ~~~~~~~~~~ik~~v-~iPVi~ 281 (353)
T cd02930 261 RGAFAWATAKLKRAV-DIPVIA 281 (353)
T ss_pred chhhHHHHHHHHHhC-CCCEEE
Confidence 223456678898888 899875
No 82
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.06 E-value=4.4 Score=38.05 Aligned_cols=109 Identities=14% Similarity=0.047 Sum_probs=69.4
Q ss_pred HhhhcCCCCEEEeccccCCcC----------------------CCHHHHHHHHHHHHHHhcCCCceEEEecCCC------
Q psy9602 122 TLRMAPIIDQMVNGTTGEGVS----------------------MTTAERKLNLEAWMTEAKTHGFTVMVQIGGT------ 173 (239)
Q Consensus 122 ~~~~~gg~glvV~GstGE~~s----------------------LT~eER~~li~~vve~~~G~rvpVIaGVg~~------ 173 (239)
....+.|.|.++.||..+-.. |+...-..+++...+.. . ++|||+.++++
T Consensus 76 ~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~-~-~~pvivsI~~~~~~~~~ 153 (344)
T PRK05286 76 DALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAY-R-GIPLGINIGKNKDTPLE 153 (344)
T ss_pred HHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhc-C-CCcEEEEEecCCCCCcc
Confidence 334567888888888776411 11112233333333322 3 68999999865
Q ss_pred -CHHHHHHHHHHHHhCCCCEEEEC--CCCC--C-CCCCHHHHHHHHHHHHhhCCC----CcEEEEeCCCC
Q psy9602 174 -CFQEVVELAKHAESLNVHAVLCL--PELF--F-TPASVEDLVDYLRDVGEAAPA----TPLFYYHIPMF 233 (239)
Q Consensus 174 -St~eAIelar~A~~aGAdaVlV~--PP~y--~-~~~s~e~iv~yf~~Vaeatpd----LPIiLYN~P~~ 233 (239)
+.++-.+.++.+.+ +||++.+- -|.. . .....+.+.+.+++|.+++++ +||++==-|..
T Consensus 154 ~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~ 222 (344)
T PRK05286 154 DAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL 222 (344)
T ss_pred cCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC
Confidence 67888888888876 69998864 2332 0 111678888999999998832 89887655543
No 83
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=91.06 E-value=1.2 Score=44.14 Aligned_cols=99 Identities=13% Similarity=-0.074 Sum_probs=64.2
Q ss_pred hhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHHhcC---CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 124 RMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTEAKT---HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 124 ~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~~~G---~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
...||.+++=-= ..+.-.+-..+||...+..+++.+.. .+.-..++|++.++++.++.++.|++.|++++|+.+-.
T Consensus 192 ~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~ 271 (475)
T CHL00040 192 CLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAVFARELGVPIVMHDYLT 271 (475)
T ss_pred HHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHHHHHHcCCceEEEeccc
Confidence 345555544111 23456677889999887777665332 03333669998899999999999999999999998644
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 200 FFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 200 y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
+--. .+...+..++.. ++||..+
T Consensus 272 ~G~~-----al~~l~~~~~~~-~l~IhaH 294 (475)
T CHL00040 272 GGFT-----ANTSLAHYCRDN-GLLLHIH 294 (475)
T ss_pred cccc-----hHHHHHHHhhhc-CceEEec
Confidence 3222 244444444454 6666543
No 84
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=91.00 E-value=1.9 Score=41.08 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHHhcCC---CceEEEecC---------------------CCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 144 TTAERKLNLEAWMTEAKTH---GFTVMVQIG---------------------GTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~---rvpVIaGVg---------------------~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
|.|.|.+++..+++.+... +.||.+=++ +.+.++++++++..+++|+|.+-|....
T Consensus 196 slenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~ 275 (382)
T cd02931 196 SLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGS 275 (382)
T ss_pred CHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 5688888777777766540 345554222 3468999999999999999999987432
Q ss_pred C-----CCC--C-CHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 200 F-----FTP--A-SVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 200 y-----~~~--~-s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+ ..+ . .+.....+-+.+.+.+ ++||+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi~ 310 (382)
T cd02931 276 YDAWYWNHPPMYQKKGMYLPYCKALKEVV-DVPVIM 310 (382)
T ss_pred CcccccccCCccCCcchhHHHHHHHHHHC-CCCEEE
Confidence 1 111 0 1122234556777777 899885
No 85
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=90.83 E-value=2.4 Score=36.23 Aligned_cols=77 Identities=13% Similarity=0.048 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.++++-+.+.+...+.-+++.....+.+.-.+..+.....++|++++.++... +......++..+.+. ++|++++
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~---~~~~~~~~i~~~~~~--~ipvV~i 89 (273)
T cd06292 15 PAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHA---DTHADHSHYERLAER--GLPVVLV 89 (273)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCC---cccchhHHHHHHHhC--CCCEEEE
Confidence 44444444444332456666666667777888888999999999999875422 223455666666554 7999999
Q ss_pred eC
Q psy9602 229 HI 230 (239)
Q Consensus 229 N~ 230 (239)
|.
T Consensus 90 ~~ 91 (273)
T cd06292 90 NG 91 (273)
T ss_pred cC
Confidence 85
No 86
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=90.69 E-value=1.1 Score=40.47 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=60.5
Q ss_pred HhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 122 TLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 122 ~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
....+.|.+++=....| -.++++.+++.. ++||++ |+...+.++++++++.+.++||+++.+....
T Consensus 167 ~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~---~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i 234 (267)
T PRK07226 167 RVAAELGADIVKTNYTG---------DPESFREVVEGC---PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNV 234 (267)
T ss_pred HHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhh
Confidence 33445677776333322 135566666543 577766 6666688999999999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhh
Q psy9602 200 FFTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 200 y~~~~s~e~iv~yf~~Vaea 219 (239)
+..+ ++.+..+-+..+...
T Consensus 235 ~~~~-~p~~~~~~l~~~v~~ 253 (267)
T PRK07226 235 FQHE-DPEAITRAISAVVHE 253 (267)
T ss_pred hcCC-CHHHHHHHHHHHHhC
Confidence 8777 888888777776643
No 87
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=90.20 E-value=4.1 Score=40.34 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=66.7
Q ss_pred HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC-----CCCHHHHHHHHHHHHhCCCCEEE
Q psy9602 121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG-----GTCFQEVVELAKHAESLNVHAVL 194 (239)
Q Consensus 121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg-----~~St~eAIelar~A~~aGAdaVl 194 (239)
++...+.|.+.+ ++-+..| .+.++..++.++.....|...++ ..+.+..+++++.+.++|||.+.
T Consensus 101 v~~A~~~Gvd~irif~~lnd---------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~ 171 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALND---------IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSIC 171 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCH---------HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 445566666654 6666555 23344444554432344543332 23578899999999999999999
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 195 V~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
+.-..... ++.++.+.++.|-+++ ++||-++-
T Consensus 172 i~Dt~G~l--~P~~v~~Lv~~lk~~~-~vpI~~H~ 203 (467)
T PRK14041 172 IKDMAGLL--TPKRAYELVKALKKKF-GVPVEVHS 203 (467)
T ss_pred ECCccCCc--CHHHHHHHHHHHHHhc-CCceEEEe
Confidence 88766543 7899999999999999 69987654
No 88
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=90.14 E-value=2 Score=41.92 Aligned_cols=85 Identities=9% Similarity=-0.095 Sum_probs=56.9
Q ss_pred HHHHHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602 113 LTCMLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAES 187 (239)
Q Consensus 113 ~~~~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~ 187 (239)
+-+.++.-+.....||.+++=-= ....-.+...+||...+..+++. ++. +.-..+++++. +++.++.++.+++
T Consensus 145 sp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~-~~~y~~NiT~~-~~em~~ra~~a~e 222 (412)
T cd08213 145 SPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGE-RKAYLANITAP-VREMERRAELVAD 222 (412)
T ss_pred CHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCC-cceEEEEecCC-HHHHHHHHHHHHH
Confidence 33344443334445555554111 23445677889998887777554 333 45566699876 9999999999999
Q ss_pred CCCCEEEECCCC
Q psy9602 188 LNVHAVLCLPEL 199 (239)
Q Consensus 188 aGAdaVlV~PP~ 199 (239)
+|++++|+-+-.
T Consensus 223 ~G~~~~mv~~~~ 234 (412)
T cd08213 223 LGGKYVMIDVVV 234 (412)
T ss_pred hCCCeEEeeccc
Confidence 999999998643
No 89
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=90.13 E-value=2.7 Score=39.36 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=57.6
Q ss_pred eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE---ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHH
Q psy9602 134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV---QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLV 210 (239)
Q Consensus 134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa---GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv 210 (239)
+|+--=-.-.+.+|-.+=|+.++++..+...-|++ ......++++|+.++.++++|||++..- -.. +.+++
T Consensus 121 cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~--al~---~~e~i- 194 (289)
T COG2513 121 CGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPE--ALT---DLEEI- 194 (289)
T ss_pred cCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccc--cCC---CHHHH-
Confidence 45543345568899999999999987641233333 2344559999999999999999987543 221 44554
Q ss_pred HHHHHHHhhCC-CCcEEEEeCCC
Q psy9602 211 DYLRDVGEAAP-ATPLFYYHIPM 232 (239)
Q Consensus 211 ~yf~~Vaeatp-dLPIiLYN~P~ 232 (239)
+.++++++ .+|+.+=-++.
T Consensus 195 ---~~f~~av~~pl~~N~t~~g~ 214 (289)
T COG2513 195 ---RAFAEAVPVPLPANITEFGK 214 (289)
T ss_pred ---HHHHHhcCCCeeeEeeccCC
Confidence 44455551 26665555543
No 90
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.04 E-value=3.8 Score=35.25 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
+..+++-+.+.+...+..+++..+.. +.....+.++.+...++|++++.|+. .+.+...++.+.+. ++|++
T Consensus 15 ~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~------~~~~~~~l~~~~~~--~ipvV 86 (271)
T cd06312 15 WTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPD------PDALDPAIKRAVAA--GIPVI 86 (271)
T ss_pred HHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC------hHHhHHHHHHHHHC--CCeEE
Confidence 34444444444433356777766666 88888899999999999999998742 23344556666554 79999
Q ss_pred EEeCCC
Q psy9602 227 YYHIPM 232 (239)
Q Consensus 227 LYN~P~ 232 (239)
+.|.+.
T Consensus 87 ~~~~~~ 92 (271)
T cd06312 87 SFNAGD 92 (271)
T ss_pred EeCCCC
Confidence 998753
No 91
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=89.80 E-value=1.8 Score=40.72 Aligned_cols=84 Identities=13% Similarity=-0.063 Sum_probs=56.2
Q ss_pred HHHHHHhhHHhhhcCCCCEEEecc-ccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602 113 LTCMLLVGITLRMAPIIDQMVNGT-TGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAES 187 (239)
Q Consensus 113 ~~~~l~~~v~~~~~gg~glvV~Gs-tGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~ 187 (239)
+.+.++.-+.....+|.+++=-=. ...-.+...+||...+..+++. ++. +.-..+++++.+.++.++.++.|++
T Consensus 28 sp~~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~-~~ly~~NiT~~~~~em~~ra~~a~~ 106 (309)
T PF00016_consen 28 SPEELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGE-KKLYAANITADTPDEMIERAEYAKE 106 (309)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS---EEEEEE-SSSHHHHHHHHHHHHH
T ss_pred cccchhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccce-ecceecccccccHHHHHHhhhhhhh
Confidence 444444434444567777661111 1355677889999887776654 433 5566779999899999999999999
Q ss_pred CCCCEEEECC
Q psy9602 188 LNVHAVLCLP 197 (239)
Q Consensus 188 aGAdaVlV~P 197 (239)
.|++++|+-+
T Consensus 107 ~G~~~vmv~~ 116 (309)
T PF00016_consen 107 AGANAVMVNV 116 (309)
T ss_dssp HTGSEEEEEH
T ss_pred hccchhhccc
Confidence 9999999974
No 92
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=89.73 E-value=4.4 Score=34.78 Aligned_cols=79 Identities=22% Similarity=0.090 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecCC-CCH-HHHHHHHHHHHhCCCCEEEECCCCCCC-CCCHHHHHHHHHHHHhhC
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQIGG-TCF-QEVVELAKHAESLNVHAVLCLPELFFT-PASVEDLVDYLRDVGEAA 220 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGVg~-~St-~eAIelar~A~~aGAdaVlV~PP~y~~-~~s~e~iv~yf~~Vaeat 220 (239)
..+.-.++++.+.+.+. +||.+.+.. .+. ++++++++..++.|+|.+.+....... + ....-+++++.+.+..
T Consensus 107 ~~~~~~eii~~v~~~~~---~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~-~~~~~~~~~~~i~~~~ 182 (231)
T cd02801 107 DPELVAEIVRAVREAVP---IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRY-SGPADWDYIAEIKEAV 182 (231)
T ss_pred CHHHHHHHHHHHHHhcC---CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcC-CCCCCHHHHHHHHhCC
Confidence 33444566666655542 577776532 222 489999999999999999887643211 1 1122356677888877
Q ss_pred CCCcEEE
Q psy9602 221 PATPLFY 227 (239)
Q Consensus 221 pdLPIiL 227 (239)
++||+.
T Consensus 183 -~ipvi~ 188 (231)
T cd02801 183 -SIPVIA 188 (231)
T ss_pred -CCeEEE
Confidence 899875
No 93
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=89.68 E-value=1.6 Score=39.12 Aligned_cols=84 Identities=12% Similarity=0.001 Sum_probs=58.1
Q ss_pred HhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 122 TLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 122 ~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
....+.|.+++-.+.. . -.+.++.+++.. ++||++ |+...+.+++++.+..+.++||+++.+..-.
T Consensus 163 ~~a~~~GADyikt~~~-----~----~~~~l~~~~~~~---~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i 230 (258)
T TIGR01949 163 RLGAELGADIVKTPYT-----G----DIDSFRDVVKGC---PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNI 230 (258)
T ss_pred HHHHHHCCCEEeccCC-----C----CHHHHHHHHHhC---CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHh
Confidence 3445566665543321 1 244555555543 578776 5666679999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q psy9602 200 FFTPASVEDLVDYLRDVGE 218 (239)
Q Consensus 200 y~~~~s~e~iv~yf~~Vae 218 (239)
+..+ ++.+..+-++.+..
T Consensus 231 ~~~~-dp~~~~~~l~~~i~ 248 (258)
T TIGR01949 231 FQHD-DPVGITKAVCKIVH 248 (258)
T ss_pred hcCC-CHHHHHHHHHHHHh
Confidence 7666 77777777766654
No 94
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=89.58 E-value=3.1 Score=38.05 Aligned_cols=131 Identities=19% Similarity=0.036 Sum_probs=75.8
Q ss_pred hhhhcc-ccccccccCCC--CCccccceEEEeehhhHHH------HHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHH
Q psy9602 78 RKRLRN-AHGEVVMIDPS--DLPKRAKWTIIITAGLLLL------TCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAER 148 (239)
Q Consensus 78 ~~~~~~-~~p~~~~iD~~--~l~~~~~W~iv~~A~~~~~------~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER 148 (239)
+.+|.. +.|+...||-. -|....++-+++.|+.... ...|+..+ .+.+. .+++|+.+ ..|.++.
T Consensus 38 ~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa---~~~g~-~~~~~~~~---~~~~~~i 110 (299)
T cd02809 38 RIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAA---AAAGI-PFTLSTVS---TTSLEEV 110 (299)
T ss_pred hceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCchHHHHHHHHH---HHcCC-CEEecCCC---cCCHHHH
Confidence 334443 77776666655 2333446677777775432 33443332 12222 23333322 2344433
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEEC--CCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLCL--PELFFTPASVEDLVDYLRDVGEAAPATPL 225 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV~--PP~y~~~~s~e~iv~yf~~VaeatpdLPI 225 (239)
.+. . ..|+++++... +.+...++++.+.+.|++++.+. .|.. .. . ...+..+.|.+++ ++||
T Consensus 111 ~~~-------~---~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~-~~-~--~~~~~i~~l~~~~-~~pv 175 (299)
T cd02809 111 AAA-------A---PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVL-GR-R--LTWDDLAWLRSQW-KGPL 175 (299)
T ss_pred HHh-------c---CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-CC-C--CCHHHHHHHHHhc-CCCE
Confidence 322 2 24888887654 78888899999999999998874 2321 11 1 2346778888888 7999
Q ss_pred EEEeC
Q psy9602 226 FYYHI 230 (239)
Q Consensus 226 iLYN~ 230 (239)
++=..
T Consensus 176 ivK~v 180 (299)
T cd02809 176 ILKGI 180 (299)
T ss_pred EEeec
Confidence 88643
No 95
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=89.54 E-value=5.3 Score=35.63 Aligned_cols=82 Identities=11% Similarity=0.177 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy9602 143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPA 222 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatpd 222 (239)
|..+=+..+.+.+.+++......+++.-+..+.....+..+.....++|++++.|+. ...+...++.+.+ . +
T Consensus 8 ~~~~~~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~------~~~~~~~l~~~~~-~-~ 79 (302)
T TIGR02634 8 LRLERWQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQN------GQVLSNAVQEAKD-E-G 79 (302)
T ss_pred cchhhHHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC------hhHHHHHHHHHHH-C-C
Confidence 444455555555555555434677776677788888889999999999999998643 2334455666555 4 7
Q ss_pred CcEEEEeCCC
Q psy9602 223 TPLFYYHIPM 232 (239)
Q Consensus 223 LPIiLYN~P~ 232 (239)
+||+++|-+.
T Consensus 80 iPvV~~d~~~ 89 (302)
T TIGR02634 80 IKVVAYDRLI 89 (302)
T ss_pred CeEEEecCcC
Confidence 9999998764
No 96
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=89.48 E-value=2.9 Score=38.76 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=53.8
Q ss_pred CHHHHH----HHHHHHHHHhcCCCceEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCC----CCCHHH
Q psy9602 144 TTAERK----LNLEAWMTEAKTHGFTVMVQIG-------GTCFQEVVELAKHAESLNVHAVLCLPELFFT----PASVED 208 (239)
Q Consensus 144 T~eER~----~li~~vve~~~G~rvpVIaGVg-------~~St~eAIelar~A~~aGAdaVlV~PP~y~~----~~s~e~ 208 (239)
+.+.|. ++++.+.+.++. +.||.+=++ +.+.++++++++..++.|+|.+-+....+.. +.....
T Consensus 199 sl~nr~rf~~eiv~aIR~~vG~-d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~ 277 (336)
T cd02932 199 SLENRMRFLLEVVDAVRAVWPE-DKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGY 277 (336)
T ss_pred CHHHHhHHHHHHHHHHHHHcCC-CceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccc
Confidence 445554 455555555544 567776333 4568999999999999999999876332211 101222
Q ss_pred HHHHHHHHHhhCCCCcEEE
Q psy9602 209 LVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 209 iv~yf~~VaeatpdLPIiL 227 (239)
..++++.|.+.+ ++||+.
T Consensus 278 ~~~~~~~ir~~~-~iPVi~ 295 (336)
T cd02932 278 QVPFAERIRQEA-GIPVIA 295 (336)
T ss_pred cHHHHHHHHhhC-CCCEEE
Confidence 357788899888 899886
No 97
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=89.45 E-value=2.2 Score=36.60 Aligned_cols=67 Identities=22% Similarity=0.206 Sum_probs=52.9
Q ss_pred hcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC--CCC----------CCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 159 AKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP--ELF----------FTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 159 ~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P--P~y----------~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
... +.|+++.+++.+.++..+.++.++++|+|+|-+-- |.. ... +.+.+.+..+++.+.+ +.|+.
T Consensus 51 ~~~-~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~-~~~~~~eii~~v~~~~-~~~v~ 127 (231)
T cd02801 51 NPE-ERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLK-DPELVAEIVRAVREAV-PIPVT 127 (231)
T ss_pred Ccc-CCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcC-CHHHHHHHHHHHHHhc-CCCEE
Confidence 444 79999999999999999999999999999997742 221 011 5677888888888888 57887
Q ss_pred EE
Q psy9602 227 YY 228 (239)
Q Consensus 227 LY 228 (239)
+-
T Consensus 128 vk 129 (231)
T cd02801 128 VK 129 (231)
T ss_pred EE
Confidence 74
No 98
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=89.42 E-value=1.2 Score=41.70 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=73.3
Q ss_pred cCCC--CEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe--cCCCCH-HHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 126 APII--DQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ--IGGTCF-QEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 126 ~gg~--glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG--Vg~~St-~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
+.|| .-+..+..|.+...+.+--.++++.+++.++ ++||-+= +|-... ..+.+.++.++++|++++.|-.=--
T Consensus 99 N~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~--~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr 176 (323)
T COG0042 99 NCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG--DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTR 176 (323)
T ss_pred eCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC--CCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccH
Confidence 3444 3478889999999999999999999999985 3677662 233333 3788999999999999999986331
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 201 FTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 201 ~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
....+...-+++...|.+..+++||+.
T Consensus 177 ~~~y~~~ad~~~I~~vk~~~~~ipvi~ 203 (323)
T COG0042 177 AQGYLGPADWDYIKELKEAVPSIPVIA 203 (323)
T ss_pred HhcCCCccCHHHHHHHHHhCCCCeEEe
Confidence 110022367788888888884488775
No 99
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=89.42 E-value=2.7 Score=41.16 Aligned_cols=80 Identities=16% Similarity=0.039 Sum_probs=56.3
Q ss_pred cCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHH
Q psy9602 138 GEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYL 213 (239)
Q Consensus 138 GE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf 213 (239)
..-.+...+||...+..+++. ++. ++-..+++++ ++++.++.++.|+++|++++|+-+-.+ .. .-+
T Consensus 200 ~~q~f~p~~eRv~~~~~ai~~a~~eTG~-~~~ya~NiT~-~~~em~~ra~~a~~~G~~~vmv~~~~~-G~-------~al 269 (424)
T cd08208 200 ADVDWCPLEERAALLGKARRRAEAETGV-PKIYLANITD-EVDRLMELHDVAVRNGANALLINAMPV-GL-------SAV 269 (424)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhhCC-cceEEEEccC-CHHHHHHHHHHHHHhCCCEEEEeeecc-cH-------HHH
Confidence 455667779998866655554 443 4555569998 699999999999999999999986433 11 225
Q ss_pred HHHHhhCCCCcEEEE
Q psy9602 214 RDVGEAAPATPLFYY 228 (239)
Q Consensus 214 ~~VaeatpdLPIiLY 228 (239)
..|++.+ ++||..+
T Consensus 270 ~~L~~~~-~l~ihaH 283 (424)
T cd08208 270 RMLRKHA-QVPLIAH 283 (424)
T ss_pred HHHHhcC-CCeEEec
Confidence 5566666 6777544
No 100
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=89.22 E-value=3.9 Score=36.80 Aligned_cols=85 Identities=12% Similarity=0.011 Sum_probs=58.8
Q ss_pred cccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHH
Q psy9602 136 TTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLR 214 (239)
Q Consensus 136 stGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~ 214 (239)
..|+...-..+--.++++.+.+ - ++||.+=+... +..+.+++++.++++|+|++.|-. .+.. ....-.++.+
T Consensus 111 g~G~~Ll~dp~~l~~iv~av~~---~-~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~--~~~g-~~~a~~~~I~ 183 (231)
T TIGR00736 111 GIGQELLKNKELLKEFLTKMKE---L-NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA--MYPG-KPYADMDLLK 183 (231)
T ss_pred CCchhhcCCHHHHHHHHHHHHc---C-CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee--CCCC-CchhhHHHHH
Confidence 4566666666666677777662 2 58999866543 345789999999999999999953 2222 2224578888
Q ss_pred HHHhhCCCCcEEE
Q psy9602 215 DVGEAAPATPLFY 227 (239)
Q Consensus 215 ~VaeatpdLPIiL 227 (239)
.|.++++++|||-
T Consensus 184 ~i~~~~~~ipIIg 196 (231)
T TIGR00736 184 ILSEEFNDKIIIG 196 (231)
T ss_pred HHHHhcCCCcEEE
Confidence 9998873488663
No 101
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=89.12 E-value=7.1 Score=36.76 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=63.8
Q ss_pred HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe---cCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602 121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ---IGGTCFQEVVELAKHAESLNVHAVLCL 196 (239)
Q Consensus 121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG---Vg~~St~eAIelar~A~~aGAdaVlV~ 196 (239)
++...+.+.+.+ +.-+..|. +.-.+.++.+.+. ...|.+. ....+.+..+++++.+.+.|++.+.+.
T Consensus 93 l~~a~~~gvd~iri~~~~~e~-----d~~~~~i~~ak~~----G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~ 163 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCTEA-----DVSEQHIGMAREL----GMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIV 163 (333)
T ss_pred HHHHHHCCCCEEEEEeccchH-----HHHHHHHHHHHHc----CCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 344455555544 54444443 2223333333332 2344333 345678999999999999999999888
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCC-CCcEEEE
Q psy9602 197 PELFFTPASVEDLVDYLRDVGEAAP-ATPLFYY 228 (239)
Q Consensus 197 PP~y~~~~s~e~iv~yf~~Vaeatp-dLPIiLY 228 (239)
-..... +++++.++++.+-+..+ ++||.++
T Consensus 164 DT~G~~--~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 164 DSAGAM--LPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred cCCCCC--CHHHHHHHHHHHHHhCCCCceEEEE
Confidence 876533 78999999999998873 4888765
No 102
>PRK09816 thrL thr operon leader peptide; Provisional
Probab=89.11 E-value=0.46 Score=28.65 Aligned_cols=19 Identities=63% Similarity=0.809 Sum_probs=15.6
Q ss_pred ceeEEEEEEEeecCCCCCC
Q psy9602 2 ETTITTVTTITTGGGSGRQ 20 (239)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (239)
.||++|..|||||.|.|..
T Consensus 5 stt~~ttitittgngag~~ 23 (26)
T PRK09816 5 STTITTTITITTGNGAGXX 23 (26)
T ss_pred eeEEEEEEEEEeCCccccc
Confidence 4778888899999998864
No 103
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=88.93 E-value=2.8 Score=40.62 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=67.4
Q ss_pred HHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHhCCC
Q psy9602 116 MLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAESLNV 190 (239)
Q Consensus 116 ~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~aGA 190 (239)
.++.-+.....||.+++=-= ....-.+-..+||...+..+++. ++. ++-..+++++. +++.++.++.+++.|+
T Consensus 141 ~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~-~~~ya~NiT~~-~~em~~ra~~~~~~G~ 218 (391)
T cd08209 141 DLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGR-RTLYAVNLTGP-VFTLKEKARRLVEAGA 218 (391)
T ss_pred HHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCC-cceEEEEcCCC-HHHHHHHHHHHHHhCC
Confidence 33333333444555544110 23455677889998877776665 433 45567799875 8999999999999999
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Q psy9602 191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTR 235 (239)
Q Consensus 191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~TG 235 (239)
+++|+.+-.+ .. . -++.|++. |+..+.|+-.|...|
T Consensus 219 ~~~mv~~~~~-G~---~----~l~~l~~~-~~~~lpIhaHra~~g 254 (391)
T cd08209 219 NALLFNVFAY-GL---D----VLEALASD-PEINVPIFAHPAFAG 254 (391)
T ss_pred CEEEEecccc-ch---H----HHHHHHhc-CcCCcEEEecCCccc
Confidence 9999987443 21 1 25556653 344444444555444
No 104
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=88.75 E-value=6.1 Score=40.12 Aligned_cols=96 Identities=14% Similarity=0.153 Sum_probs=64.8
Q ss_pred HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC--C---CCHHHHHHHHHHHHhCCCCEEE
Q psy9602 121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG--G---TCFQEVVELAKHAESLNVHAVL 194 (239)
Q Consensus 121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg--~---~St~eAIelar~A~~aGAdaVl 194 (239)
++...+.|.+.+ ++-+..+. +-++..++.++.....|.+.++ . .+.+..+++++.+.++|||.+.
T Consensus 97 v~~a~~~Gvd~irif~~lnd~---------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~ 167 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDP---------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSIC 167 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcH---------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 444566666654 66555553 2233344444322344544432 1 2579999999999999999998
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 195 V~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
+-...... ++.++.+.++.|.+.. ++||-++
T Consensus 168 i~Dt~G~~--~P~~v~~lv~~lk~~~-~~pi~~H 198 (582)
T TIGR01108 168 IKDMAGIL--TPKAAYELVSALKKRF-GLPVHLH 198 (582)
T ss_pred ECCCCCCc--CHHHHHHHHHHHHHhC-CCceEEE
Confidence 88765532 7899999999999999 6898754
No 105
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=88.58 E-value=2.7 Score=39.78 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=71.5
Q ss_pred ccccceEEEeehhhHHHH------HHHHhhHHhhhcCCCCE-EEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe
Q psy9602 97 PKRAKWTIIITAGLLLLT------CMLLVGITLRMAPIIDQ-MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ 169 (239)
Q Consensus 97 ~~~~~W~iv~~A~~~~~~------~~l~~~v~~~~~gg~gl-vV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG 169 (239)
-+..++-+++.|++..+. ..|+..+. + .|+ +..|+. ...+..+|..+-++.+.+... +.|+++.
T Consensus 56 g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~---~--~G~~~~~Gs~--~~~~~~~~~~~~~~~vr~~~p--~~p~~aN 126 (352)
T PRK05437 56 GKKLSAPFLINAMTGGSEKAKEINRKLAEAAE---E--LGIAMGVGSQ--RAALKDPELADSFSVVRKVAP--DGLLFAN 126 (352)
T ss_pred CceecCCEEecccCCCChhHHHHHHHHHHHHH---H--cCCCeEeccc--HhhccChhhHHHHHHHHHHCC--CceEEee
Confidence 356778888888877643 34433311 1 222 233443 222334457777788777764 4799998
Q ss_pred cCCCCH-----HHHHHHHHHHHhCCCCEEEECCCCC---CCCC---CHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 170 IGGTCF-----QEVVELAKHAESLNVHAVLCLPELF---FTPA---SVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 170 Vg~~St-----~eAIelar~A~~aGAdaVlV~PP~y---~~~~---s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
++.... ++..+ ..+.++||++-+--+.. ..+. +.+.+++.++.|.+.+ +.||++=-.
T Consensus 127 l~~~~~~~~~~~~~~~---~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~ 194 (352)
T PRK05437 127 LGAVQLYGYGVEEAQR---AVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL-PVPVIVKEV 194 (352)
T ss_pred cCccccCCCCHHHHHH---HHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh-CCCEEEEeC
Confidence 887655 33333 33445677776653221 1111 3455778899999998 899998544
No 106
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=88.57 E-value=7.7 Score=32.98 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL 225 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI 225 (239)
.=+.++++.+.+.+...+.-+++..+..+.+...+..+.+.+.++|++++.|+. .......++.+.+ . ++|+
T Consensus 12 ~~~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~------~~~~~~~~~~~~~-~-~ipv 83 (267)
T cd06322 12 PFYIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVD------SKGIRAAIAKAKK-A-GIPV 83 (267)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC------hhhhHHHHHHHHH-C-CCCE
Confidence 334455555555444435677777777778888888989899999999998642 1223344566544 4 7999
Q ss_pred EEEeCCC
Q psy9602 226 FYYHIPM 232 (239)
Q Consensus 226 iLYN~P~ 232 (239)
+++|.+.
T Consensus 84 V~~~~~~ 90 (267)
T cd06322 84 ITVDIAA 90 (267)
T ss_pred EEEcccC
Confidence 9999753
No 107
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=88.55 E-value=10 Score=35.27 Aligned_cols=105 Identities=16% Similarity=0.056 Sum_probs=66.6
Q ss_pred hhhcCCCCEEEeccccCCc-------------------------CCCHHHHHHHHHHHHHHhcCCCceEEEecCCCC---
Q psy9602 123 LRMAPIIDQMVNGTTGEGV-------------------------SMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTC--- 174 (239)
Q Consensus 123 ~~~~gg~glvV~GstGE~~-------------------------sLT~eER~~li~~vve~~~G~rvpVIaGVg~~S--- 174 (239)
...+.|.|.++.+|..+-. +...++..+-++. ...- +.||++.++.++
T Consensus 67 ~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~---~~~~-~~plivsi~g~~~~~ 142 (327)
T cd04738 67 ALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKK---RRPR-GGPLGVNIGKNKDTP 142 (327)
T ss_pred HHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHH---hccC-CCeEEEEEeCCCCCc
Confidence 3346788888888877641 2223444444433 2222 689999998876
Q ss_pred ----HHHHHHHHHHHHhCCCCEEEE--CCCCCCC---CCCHHHHHHHHHHHHhhCC----CCcEEEEeCCC
Q psy9602 175 ----FQEVVELAKHAESLNVHAVLC--LPELFFT---PASVEDLVDYLRDVGEAAP----ATPLFYYHIPM 232 (239)
Q Consensus 175 ----t~eAIelar~A~~aGAdaVlV--~PP~y~~---~~s~e~iv~yf~~Vaeatp----dLPIiLYN~P~ 232 (239)
.++-++.++.+.+ +||++.+ .-|++-. ..+.+.+.+.+++|.+.+. ++||++==-|.
T Consensus 143 ~~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~ 212 (327)
T cd04738 143 LEDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD 212 (327)
T ss_pred ccccHHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC
Confidence 5667777777665 4899887 3354311 1167888899999988872 28887755443
No 108
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=88.54 E-value=2.1 Score=39.38 Aligned_cols=79 Identities=22% Similarity=0.103 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy9602 145 TAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAP 221 (239)
Q Consensus 145 ~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatp 221 (239)
.+--.++++.+.+.+ .+||.+-+. ..+..+.+++++.++++|+|++.+.+..-....+.....++.+.|.+.+
T Consensus 116 ~~~~~ei~~~vr~~~---~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~- 191 (319)
T TIGR00737 116 PDLIGKIVKAVVDAV---DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV- 191 (319)
T ss_pred HHHHHHHHHHHHhhc---CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC-
Confidence 444456666666555 368877552 1233467899999999999999986422100002234578899999998
Q ss_pred CCcEEE
Q psy9602 222 ATPLFY 227 (239)
Q Consensus 222 dLPIiL 227 (239)
++||+.
T Consensus 192 ~ipvi~ 197 (319)
T TIGR00737 192 RIPVIG 197 (319)
T ss_pred CCcEEE
Confidence 799764
No 109
>PLN02321 2-isopropylmalate synthase
Probab=88.49 E-value=6.7 Score=40.31 Aligned_cols=91 Identities=12% Similarity=0.025 Sum_probs=72.1
Q ss_pred EEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCc-eEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602 131 QMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGF-TVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFF 201 (239)
Q Consensus 131 lvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rv-pVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~ 201 (239)
+-++.++++. ...|.+|-++.+..+++.++.... -|.++. +..+.+.+++.++.+.++||+.+.+..-..+
T Consensus 186 I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~ 265 (632)
T PLN02321 186 IHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGY 265 (632)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 5577788887 478999999999999998876223 355544 3467899999999999999999888776654
Q ss_pred CCCCHHHHHHHHHHHHhhCCCC
Q psy9602 202 TPASVEDLVDYLRDVGEAAPAT 223 (239)
Q Consensus 202 ~~~s~e~iv~yf~~VaeatpdL 223 (239)
. +++++.++++.|.+.+|+.
T Consensus 266 ~--~P~~v~~li~~l~~~~~~~ 285 (632)
T PLN02321 266 T--LPSEFGQLIADIKANTPGI 285 (632)
T ss_pred C--CHHHHHHHHHHHHHhcCCC
Confidence 3 6899999999999988643
No 110
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=88.41 E-value=2.7 Score=40.03 Aligned_cols=88 Identities=11% Similarity=0.067 Sum_probs=59.4
Q ss_pred CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--
Q psy9602 127 PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA-- 204 (239)
Q Consensus 127 gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~-- 204 (239)
|..+++|.++.|....=...- .+.+..+.+.+++ ++|||+.=+=.+-.++++.. .+||++|++--|+.|...
T Consensus 242 G~d~I~vsnhGGr~ld~~~~~-~~~l~~i~~a~~~-~i~vi~dGGIr~g~Di~kaL----alGA~~V~iGr~~l~~la~~ 315 (351)
T cd04737 242 GADGIWVSNHGGRQLDGGPAS-FDSLPEIAEAVNH-RVPIIFDSGVRRGEHVFKAL----ASGADAVAVGRPVLYGLALG 315 (351)
T ss_pred CCCEEEEeCCCCccCCCCchH-HHHHHHHHHHhCC-CCeEEEECCCCCHHHHHHHH----HcCCCEEEECHHHHHHHhhc
Confidence 445677877777542212222 2455666777777 89999866656666665533 389999999999876532
Q ss_pred CHHHHHHHHHHHHhhC
Q psy9602 205 SVEDLVDYLRDVGEAA 220 (239)
Q Consensus 205 s~e~iv~yf~~Vaeat 220 (239)
.++++..+++.+.+..
T Consensus 316 G~~gv~~~l~~l~~El 331 (351)
T cd04737 316 GAQGVASVLEHLNKEL 331 (351)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7888888888776653
No 111
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=88.41 E-value=5.4 Score=37.91 Aligned_cols=85 Identities=9% Similarity=0.146 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEec--CC-------------CCHHHHHHHHHHHHh--CCCCEEEECCCCCC-------
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQI--GG-------------TCFQEVVELAKHAES--LNVHAVLCLPELFF------- 201 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaGV--g~-------------~St~eAIelar~A~~--aGAdaVlV~PP~y~------- 201 (239)
+++.+.++.+.+.+....+|+++-+ .. ...+-.+..++.+.+ +|+|-+=+-.|.-.
T Consensus 139 ~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~ 218 (340)
T PRK12858 139 DRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFD 218 (340)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccc
Confidence 4566666666666665589998842 11 245678888899995 99999999888422
Q ss_pred ----CCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 202 ----TPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 202 ----~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
-. +.++..++|+.+.+++ ++|+++---+.
T Consensus 219 ~~~~~~-~~~~~~~~f~~~~~a~-~~P~vvlsgG~ 251 (340)
T PRK12858 219 GFEEAY-TQEEAFKLFREQSDAT-DLPFIFLSAGV 251 (340)
T ss_pred cccccc-cHHHHHHHHHHHHhhC-CCCEEEECCCC
Confidence 11 6788999999999999 79999865543
No 112
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=88.35 E-value=5.8 Score=37.54 Aligned_cols=113 Identities=5% Similarity=0.027 Sum_probs=76.5
Q ss_pred cccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHH
Q psy9602 98 KRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQE 177 (239)
Q Consensus 98 ~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~e 177 (239)
....|-+++.|+++-.+..|+.-.... |+.|=.+.++.|++....+ ..+. ..+++|++.....+
T Consensus 34 ~~l~~P~~inAM~t~iN~~LA~~a~~~----------G~~~~~~k~~~e~~~~~~r----~~~~--~~l~v~~~vg~~~~ 97 (326)
T PRK05458 34 RTFKLPVVPANMQTIIDEKIAEWLAEN----------GYFYIMHRFDPEARIPFIK----DMHE--QGLIASISVGVKDD 97 (326)
T ss_pred cEecCcEEEecccchhHHHHHHHHHHc----------CCEEEEecCCHHHHHHHHH----hccc--cccEEEEEecCCHH
Confidence 345678888888876777775532111 4555556678888887773 3332 13366766655667
Q ss_pred HHHHHHHHHhCCC--CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 178 VVELAKHAESLNV--HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 178 AIelar~A~~aGA--daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
..+.+....++|+ |.+.+-..+ + ..+.+.+..+.|.+..|+.|||.=|.
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~iD~a~---g-h~~~~~e~I~~ir~~~p~~~vi~g~V 148 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITIDIAH---G-HSDSVINMIQHIKKHLPETFVIAGNV 148 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCC---C-chHHHHHHHHHHHhhCCCCeEEEEec
Confidence 7888888888855 999986655 3 45667777888888888899988554
No 113
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=88.33 E-value=5.7 Score=33.54 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=41.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+..++...+..+.+...+.++.+.+.++|++++.|+. .. . ...++.+.+ . ++|++++|.+
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~--~~-~----~~~~~~~~~-~-~ipvV~~~~~ 88 (268)
T cd06289 29 GYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAA--GT-S----PDLLKRLAE-S-GIPVVLVARE 88 (268)
T ss_pred CCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCC--Cc-c----HHHHHHHHh-c-CCCEEEEecc
Confidence 4566666666777878888888888899999998642 11 1 124444444 4 7899999865
No 114
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=88.20 E-value=6.2 Score=36.73 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCCC-------C-CCCC-CHHHHH
Q psy9602 142 SMTTAERKLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPEL-------F-FTPA-SVEDLV 210 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP~-------y-~~~~-s~e~iv 210 (239)
.||.+|..+.++.+++.+ .+||++=+ |-.+..++.+.++...++|+.++.+-.-. . -+.. +.++..
T Consensus 60 ~l~~~e~~~~~~~I~~~~---~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~ 136 (292)
T PRK11320 60 ITTLDDVLIDVRRITDAC---DLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMV 136 (292)
T ss_pred CCCHHHHHHHHHHHHhcc---CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHH
Confidence 789999999999999887 58999944 22388999999999999999999995521 1 1112 778899
Q ss_pred HHHHHHHhhCCCCcEEE
Q psy9602 211 DYLRDVGEAAPATPLFY 227 (239)
Q Consensus 211 ~yf~~VaeatpdLPIiL 227 (239)
...++..++..+.+++|
T Consensus 137 ~kI~Aa~~a~~~~d~~I 153 (292)
T PRK11320 137 DRIKAAVDARTDPDFVI 153 (292)
T ss_pred HHHHHHHHhccCCCeEE
Confidence 99998888753455554
No 115
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=88.15 E-value=6.5 Score=33.75 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 147 ERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 147 ER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
=...++..+.+.+..++.-++..-+..+.+.-.+..+...+.++|++++.+.. + +.+.+.++.+.+ . ++|++
T Consensus 13 ~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~---~---~~~~~~i~~~~~-~-~iPvV 84 (282)
T cd06318 13 FFAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVD---P---EGLVPAVAAAKA-A-GVPVV 84 (282)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCC---c---cchHHHHHHHHH-C-CCCEE
Confidence 34445555544444334566665556677777888899999999999997642 1 223344555544 4 79999
Q ss_pred EEeCC
Q psy9602 227 YYHIP 231 (239)
Q Consensus 227 LYN~P 231 (239)
++|.+
T Consensus 85 ~~~~~ 89 (282)
T cd06318 85 VVDSS 89 (282)
T ss_pred EecCC
Confidence 99975
No 116
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=88.10 E-value=3 Score=38.98 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=70.3
Q ss_pred CccccceEEEeehhhHHH------HHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe
Q psy9602 96 LPKRAKWTIIITAGLLLL------TCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ 169 (239)
Q Consensus 96 l~~~~~W~iv~~A~~~~~------~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG 169 (239)
+....++-+++.|++... +..|+..+ -+.+.. +..|+.+ ..|..+|..+-.+.+.+.. . .+|+++.
T Consensus 48 ~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a---~~~g~~-~~~Gs~~--~~~~~~~~~~~~~~vr~~~-~-~~p~i~n 119 (333)
T TIGR02151 48 LGKRLKAPFYINAMTGGSEEAGKINRNLARAA---RELGIP-MGVGSQR--AALKDPETADTFEVVREEA-P-NGPLIAN 119 (333)
T ss_pred CCccccCCEEEeCCCCCchhHHHHHHHHHHHH---HHcCCC-eEEcCch--hhccChhhHhHHHHHHHhC-C-CCcEEee
Confidence 446688889999988765 55554432 122222 2344422 2233444443446666643 3 6899998
Q ss_pred cCCCCHHH--HHHHHHHHHhCCCCEEEECCCCC---CCCC---CHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 170 IGGTCFQE--VVELAKHAESLNVHAVLCLPELF---FTPA---SVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 170 Vg~~St~e--AIelar~A~~aGAdaVlV~PP~y---~~~~---s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
++...... .-+..+..+.++||++-+--+.. ..+. +.+.+++.++.|.+.+ ++||++=-.
T Consensus 120 l~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~ 187 (333)
T TIGR02151 120 IGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQL-SVPVIVKEV 187 (333)
T ss_pred cCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEec
Confidence 87654422 11222233334667666543211 1111 3455668899999999 899998643
No 117
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=88.05 E-value=7.9 Score=34.62 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=59.3
Q ss_pred hHHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe-------cCCCCHHHHHHHHHHHHhCCCC
Q psy9602 120 GITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ-------IGGTCFQEVVELAKHAESLNVH 191 (239)
Q Consensus 120 ~v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG-------Vg~~St~eAIelar~A~~aGAd 191 (239)
.++..++.|...+ +--..| ..+..|..+.++.+.+.+...++|+++- ++..+.+...+.++.|.++|||
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g---~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GAD 171 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVG---SDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGAD 171 (258)
T ss_pred eHHHHHHCCCCEEEEEEecC---CchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCC
Confidence 3556677666432 222222 1345677788888888776446888873 2333333333447999999999
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
.+-+. |.. + .+.++.+.+.+ .+||+.
T Consensus 172 yikt~----~~~-~----~~~l~~~~~~~-~iPVva 197 (258)
T TIGR01949 172 IVKTP----YTG-D----IDSFRDVVKGC-PAPVVV 197 (258)
T ss_pred EEecc----CCC-C----HHHHHHHHHhC-CCcEEE
Confidence 99974 222 2 45577788777 699865
No 118
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=88.02 E-value=5.8 Score=37.17 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=66.4
Q ss_pred CCcCCCHHHHHHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCCCCC--------CCC-CHH
Q psy9602 139 EGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPELFF--------TPA-SVE 207 (239)
Q Consensus 139 E~~sLT~eER~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP~y~--------~~~-s~e 207 (239)
-+..+|.+|-...++...+.+ ++||++-+ |-.+..++.+.++.+.++|+.++.+-.-..- ++. +.+
T Consensus 57 D~~~~t~~e~~~~vrrI~~a~---~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~ 133 (289)
T COG2513 57 DLGITTLDEVLADARRITDAV---DLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSID 133 (289)
T ss_pred ccccccHHHHHHHHHHHHhhc---CCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHH
Confidence 445567899999999999887 68999944 3333889999999999999999988653321 222 889
Q ss_pred HHHHHHHHHHhhCCCCcEEE
Q psy9602 208 DLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 208 ~iv~yf~~VaeatpdLPIiL 227 (239)
+.++..+++.++.++-+++|
T Consensus 134 e~v~rIkAa~~a~~~~~fvi 153 (289)
T COG2513 134 EMVDRIKAAVEARRDPDFVI 153 (289)
T ss_pred HHHHHHHHHHHhccCCCeEE
Confidence 99999999999986655554
No 119
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=87.99 E-value=1.9 Score=41.36 Aligned_cols=88 Identities=11% Similarity=0.028 Sum_probs=59.4
Q ss_pred cCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC--
Q psy9602 126 APIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP-- 203 (239)
Q Consensus 126 ~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~-- 203 (239)
.|+.++.|.++.|....-.... .+.+..+++.+++ ++|||+.=+=.+-.++++ |..+|||+|++.-|+.+..
T Consensus 248 ~Gvd~I~VS~HGGrq~~~~~a~-~~~L~ei~~av~~-~i~vi~dGGIr~g~Dv~K----aLalGAd~V~igR~~l~~la~ 321 (367)
T TIGR02708 248 AGASGIWVTNHGGRQLDGGPAA-FDSLQEVAEAVDK-RVPIVFDSGVRRGQHVFK----ALASGADLVALGRPVIYGLAL 321 (367)
T ss_pred cCcCEEEECCcCccCCCCCCcH-HHHHHHHHHHhCC-CCcEEeeCCcCCHHHHHH----HHHcCCCEEEEcHHHHHHHHh
Confidence 3455678999998655433333 3345556677777 899998655555555543 3348999999999986652
Q ss_pred CCHHHHHHHHHHHHhh
Q psy9602 204 ASVEDLVDYLRDVGEA 219 (239)
Q Consensus 204 ~s~e~iv~yf~~Vaea 219 (239)
..++++..+++.+.+.
T Consensus 322 ~G~~gv~~~l~~l~~E 337 (367)
T TIGR02708 322 GGSQGARQVFEYLNKE 337 (367)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 2788888888766544
No 120
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=87.95 E-value=1.9 Score=38.12 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 176 QEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 176 ~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
++..++++.+.+.|+|+++|---. .- +++.+.+..+.+-+.+ ++||+++ |+
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~--gv-t~~~~~~~v~~ik~~~-~lPvilf--p~ 61 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSL--GI-VESNLDQTVKKIKKIT-NLPVILF--PG 61 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcC--CC-CHHHHHHHHHHHHhhc-CCCEEEE--CC
Confidence 566778889999999999998542 23 7799999999999888 9999995 54
No 121
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=87.88 E-value=2.6 Score=38.94 Aligned_cols=91 Identities=18% Similarity=0.129 Sum_probs=60.0
Q ss_pred EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec--CC-CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH
Q psy9602 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI--GG-TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDL 209 (239)
Q Consensus 133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV--g~-~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~i 209 (239)
+-+..|-+..-+.+.-.++++.+++.++ +||-+-+ +- .+.++.+++++..+++|++++.|-+=.--...+...=
T Consensus 95 ~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~---~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~ 171 (309)
T PF01207_consen 95 TKGGAGAALLKDPDLLAEIVKAVRKAVP---IPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPAD 171 (309)
T ss_dssp HHCT-GGGGGC-HHHHHHHHHHHHHH-S---SEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---
T ss_pred hcCCcChhhhcChHHhhHHHHhhhcccc---cceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccc
Confidence 4467888888899999999999999874 5776643 33 3678899999999999999999987321111122556
Q ss_pred HHHHHHHHhhCCCCcEEE
Q psy9602 210 VDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 210 v~yf~~VaeatpdLPIiL 227 (239)
.+++..|.++. ++||+.
T Consensus 172 w~~i~~i~~~~-~ipvi~ 188 (309)
T PF01207_consen 172 WEAIAEIKEAL-PIPVIA 188 (309)
T ss_dssp HHHHHHCHHC--TSEEEE
T ss_pred hHHHHHHhhcc-cceeEE
Confidence 77888999998 688764
No 122
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=87.84 E-value=2.6 Score=39.27 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=58.2
Q ss_pred ccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCC-CCHHHHHHHHHHHHhCCCCEEEECCCC---CCCCCCHHHHH
Q psy9602 137 TGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGG-TCFQEVVELAKHAESLNVHAVLCLPEL---FFTPASVEDLV 210 (239)
Q Consensus 137 tGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~-~St~eAIelar~A~~aGAdaVlV~PP~---y~~~~s~e~iv 210 (239)
.|-...-..+.-.++++.+++.++ +||.+ ..+. .+..+.+++++.++++|+|++.+.+=. .+.. ..-.
T Consensus 110 ~Gs~ll~~p~~~~eiv~av~~a~d---~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G---~a~~ 183 (321)
T PRK10415 110 AGSALLQYPDLVKSILTEVVNAVD---VPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG---EAEY 183 (321)
T ss_pred cccHHhcCHHHHHHHHHHHHHhcC---CceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCC---CcCh
Confidence 355556667778888888888763 46554 3332 344589999999999999999987522 1211 1235
Q ss_pred HHHHHHHhhCCCCcEEE
Q psy9602 211 DYLRDVGEAAPATPLFY 227 (239)
Q Consensus 211 ~yf~~VaeatpdLPIiL 227 (239)
++++.|.+++ ++||+.
T Consensus 184 ~~i~~ik~~~-~iPVI~ 199 (321)
T PRK10415 184 DSIRAVKQKV-SIPVIA 199 (321)
T ss_pred HHHHHHHHhc-CCcEEE
Confidence 7888999988 899764
No 123
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=87.69 E-value=7.4 Score=34.42 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
+..+++-+.+.+......+++ +.+..+.+...++.+.+.+.++|++++.++ ..+.+...++.+.+ . ++|++
T Consensus 14 ~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~------~~~~~~~~~~~~~~-~-~iPvV 85 (298)
T cd06302 14 FNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPN------DPDALEPVLKKARE-A-GIKVV 85 (298)
T ss_pred HHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecC------CHHHHHHHHHHHHH-C-CCeEE
Confidence 334444444433332466665 566678888889999999999999999853 22445566666654 4 79999
Q ss_pred EEeCCC
Q psy9602 227 YYHIPM 232 (239)
Q Consensus 227 LYN~P~ 232 (239)
++|.+.
T Consensus 86 ~v~~~~ 91 (298)
T cd06302 86 THDSDV 91 (298)
T ss_pred EEcCCC
Confidence 999753
No 124
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=87.59 E-value=4.1 Score=35.19 Aligned_cols=55 Identities=18% Similarity=0.093 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCCCC-CCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 173 TCFQEVVELAKHAESLNVHAVLCLPELFF-TPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 173 ~St~eAIelar~A~~aGAdaVlV~PP~y~-~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
..++.-+..++.|.+.|||.+-+..++.. +....+.+.+...++.+.+.++|+.+
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkv 121 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKV 121 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 55777788899999999999999988753 22166779999999999985677644
No 125
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=87.54 E-value=5.8 Score=36.72 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=47.9
Q ss_pred CceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 163 GFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 163 rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
.+.++. +-+..+....++.++.+.+.|+|++++.|+ +.+.+...++.+.++ ++||+.+|.+.
T Consensus 53 G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~------d~~al~~~l~~a~~~--gIpVV~~d~~~ 115 (336)
T PRK15408 53 GVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAV------SPDGLCPALKRAMQR--GVKVLTWDSDT 115 (336)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC------CHHHHHHHHHHHHHC--CCeEEEeCCCC
Confidence 456666 555667778889999999999999999752 446677777777665 79999999864
No 126
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=87.47 E-value=3 Score=40.66 Aligned_cols=81 Identities=9% Similarity=-0.030 Sum_probs=56.8
Q ss_pred ccCCcCCCHHHHHHHHHHHHHHh----cCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHH
Q psy9602 137 TGEGVSMTTAERKLNLEAWMTEA----KTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDY 212 (239)
Q Consensus 137 tGE~~sLT~eER~~li~~vve~~----~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~y 212 (239)
.+.-.+...+||...+..+++.+ +. ++-..+++++. +++.++.++.+++.|++++|+.+-.+- . ..
T Consensus 182 l~~q~~~p~~eRv~~~~~a~~~a~~eTG~-~~~y~~NiT~~-~~em~~ra~~~~~~G~~~~mv~~~~~G-~---~~---- 251 (406)
T cd08207 182 LANPPYSPLDERVRAVMRVINDHAQRTGR-KVMYAFNITDD-IDEMRRNHDLVVEAGGTCVMVSLNSVG-L---SG---- 251 (406)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhhCC-cceEEEecCCC-HHHHHHHHHHHHHhCCCeEEEeccccc-h---HH----
Confidence 34556778899987776666543 33 45567799876 999999999999999999999864431 1 11
Q ss_pred HHHHHhhCCCCcEEEE
Q psy9602 213 LRDVGEAAPATPLFYY 228 (239)
Q Consensus 213 f~~VaeatpdLPIiLY 228 (239)
+..+++.. ++||..+
T Consensus 252 l~~l~~~~-~l~IhaH 266 (406)
T cd08207 252 LAALRRHS-QLPIHGH 266 (406)
T ss_pred HHHHHhcC-CceEEEC
Confidence 44455555 7777643
No 127
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=87.42 E-value=5.1 Score=37.37 Aligned_cols=76 Identities=20% Similarity=0.127 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCC--CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC---------CCHHHHH
Q psy9602 142 SMTTAERKLNLEAWMTEAKTH--GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP---------ASVEDLV 210 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~--rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~---------~s~e~iv 210 (239)
.-+.+++.++++.+.+...|. +.-+|+|. +++-++.++..+...++|+|.+.+.+ |++| .-..+.+
T Consensus 187 ~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl-GETeee~~etl~~Lrelg~d~v~igq--Yl~p~~~~~~v~~~~~p~~f 263 (302)
T TIGR00510 187 GATYRWSLKLLERAKEYLPNLPTKSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLGQ--YLRPSRRHLPVKRYVSPEEF 263 (302)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeecceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEeec--ccCCCCCCCccccCCCHHHH
Confidence 458899999999999975431 45689999 88999999999999999999999875 3333 1235667
Q ss_pred HHHHHHHhhC
Q psy9602 211 DYLRDVGEAA 220 (239)
Q Consensus 211 ~yf~~Vaeat 220 (239)
++|+.++...
T Consensus 264 ~~~~~~a~~~ 273 (302)
T TIGR00510 264 DYYRSVALEM 273 (302)
T ss_pred HHHHHHHHHc
Confidence 8888888876
No 128
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=87.34 E-value=8.9 Score=37.71 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=64.3
Q ss_pred HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecC---CCCHHHHHHHHHHHHhCCCCEEE
Q psy9602 121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIG---GTCFQEVVELAKHAESLNVHAVL 194 (239)
Q Consensus 121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg---~~St~eAIelar~A~~aGAdaVl 194 (239)
++...+.|.+.+ ++-+..+... ++.+++.++.....+.+ +.. -.+.+-.+++++.+.++|||.+.
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n---------~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~ 172 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRN---------LETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSIC 172 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHH---------HHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 344566666654 6666666531 22233333321233322 221 23568889999999999999999
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 195 V~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
+....... ++.++.+.++.|-++. ++||-++-
T Consensus 173 i~Dt~G~l--~P~~v~~lv~alk~~~-~~pi~~H~ 204 (448)
T PRK12331 173 IKDMAGIL--TPYVAYELVKRIKEAV-TVPLEVHT 204 (448)
T ss_pred EcCCCCCC--CHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 98766543 7899999999999998 69987753
No 129
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=87.31 E-value=5.4 Score=36.02 Aligned_cols=76 Identities=17% Similarity=0.079 Sum_probs=58.7
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEec--C-CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQI--G-GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVG 217 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIaGV--g-~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Va 217 (239)
..+|.+|-...++.+.+.+. ..||++-. + ..+..++++.++...++||++|-+-. +.++.+-.+.+.
T Consensus 53 ~~vtl~em~~~~~~I~r~~~--~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED--------~~~~~~~i~ai~ 122 (240)
T cd06556 53 LPYPVNDVPYHVRAVRRGAP--LALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEG--------GEWHIETLQMLT 122 (240)
T ss_pred CCcCHHHHHHHHHHHHhhCC--CCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcC--------cHHHHHHHHHHH
Confidence 46899999999999998774 47999944 2 23669999999999999999999873 345666777777
Q ss_pred hhCCCCcEEEE
Q psy9602 218 EAAPATPLFYY 228 (239)
Q Consensus 218 eatpdLPIiLY 228 (239)
++ .+||+-.
T Consensus 123 ~a--~i~ViaR 131 (240)
T cd06556 123 AA--AVPVIAH 131 (240)
T ss_pred Hc--CCeEEEE
Confidence 65 4777643
No 130
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=87.24 E-value=4.8 Score=36.76 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=58.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCce-EEEec----CCCCHHHHHHHHHHHHh-CCCCEEEECCCCCCCCCCHHHHHHHHH
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFT-VMVQI----GGTCFQEVVELAKHAES-LNVHAVLCLPELFFTPASVEDLVDYLR 214 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvp-VIaGV----g~~St~eAIelar~A~~-aGAdaVlV~PP~y~~~~s~e~iv~yf~ 214 (239)
..+|.+|-...++.++..++ .| |++-. ..+|.+++++.+....+ +||++|-+- +.+++.+..+
T Consensus 53 ~~vtl~em~~~~~~V~r~~~---~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiE--------d~~~~~~~I~ 121 (254)
T cd06557 53 LPVTLDEMIYHTRAVRRGAP---RALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLE--------GGAEVAETIR 121 (254)
T ss_pred CCcCHHHHHHHHHHHHhcCC---CCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEc--------CcHHHHHHHH
Confidence 47899999999999998774 47 76633 34679999999766666 999999987 3468889999
Q ss_pred HHHhhCCCCcEE
Q psy9602 215 DVGEAAPATPLF 226 (239)
Q Consensus 215 ~VaeatpdLPIi 226 (239)
.+.++ ++|++
T Consensus 122 al~~a--gipV~ 131 (254)
T cd06557 122 ALVDA--GIPVM 131 (254)
T ss_pred HHHHc--CCCee
Confidence 99976 69988
No 131
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=87.24 E-value=7.6 Score=34.18 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCC-ceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602 148 RKLNLEAWMTEAKTHG-FTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL 225 (239)
Q Consensus 148 R~~li~~vve~~~G~r-vpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI 225 (239)
+..+++-+.+.+.... ..++. +....+....++..+.+.+.++|++++.|. +.+.+...++.+.++ ++|+
T Consensus 13 ~~~~~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~------~~~~~~~~l~~~~~~--giPv 84 (302)
T TIGR02637 13 FEAANKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISAN------DPDALVPALKKAMKR--GIKV 84 (302)
T ss_pred HHHHHHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC------ChHHHHHHHHHHHHC--CCEE
Confidence 4445554444443322 33443 345667888889999999999999999863 235556667776664 7999
Q ss_pred EEEeCCC
Q psy9602 226 FYYHIPM 232 (239)
Q Consensus 226 iLYN~P~ 232 (239)
++++.+.
T Consensus 85 V~~~~~~ 91 (302)
T TIGR02637 85 VTWDSGV 91 (302)
T ss_pred EEeCCCC
Confidence 9998753
No 132
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=87.22 E-value=7.4 Score=33.09 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=44.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
++-+++..+..+.+..++..+.+...++|++++.+.. . +...+..+.+.+ . ++|++++|.+.
T Consensus 30 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~-~-----~~~~~~l~~~~~-~-~iPvV~~~~~~ 91 (275)
T cd06317 30 GVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTD-G-----QAYIPGLRKAKQ-A-GIPVVITNSNI 91 (275)
T ss_pred CCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCC-c-----cccHHHHHHHHH-C-CCcEEEeCCCC
Confidence 4566666667788888899999999999999997632 1 223334455544 4 79999999864
No 133
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=87.14 E-value=8.8 Score=33.62 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT 223 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL 223 (239)
+..=+..+++-+.+.+...+..+++..+..+.+...+.++.+.+.++|++++.|.. .+.....++.+.+ . ++
T Consensus 10 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~------~~~~~~~l~~l~~-~-~i 81 (288)
T cd01538 10 TEERWIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVD------GEALASAVEKAAD-A-GI 81 (288)
T ss_pred CcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC------hhhHHHHHHHHHH-C-CC
Confidence 33444556665555554435677776666777888888888899999999998632 2334455666555 4 79
Q ss_pred cEEEEeCCC
Q psy9602 224 PLFYYHIPM 232 (239)
Q Consensus 224 PIiLYN~P~ 232 (239)
||++.|.+.
T Consensus 82 pvV~~~~~~ 90 (288)
T cd01538 82 PVIAYDRLI 90 (288)
T ss_pred CEEEECCCC
Confidence 999998753
No 134
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=87.13 E-value=2 Score=41.15 Aligned_cols=75 Identities=8% Similarity=0.065 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHHHh-cCCCceEEE-ecCCCCHHHHHHHHHHH---HhCCCCEEEECCCCCCCCCCHHHHHHHHHHH
Q psy9602 142 SMTTAERKLNLEAWMTEA-KTHGFTVMV-QIGGTCFQEVVELAKHA---ESLNVHAVLCLPELFFTPASVEDLVDYLRDV 216 (239)
Q Consensus 142 sLT~eER~~li~~vve~~-~G~rvpVIa-GVg~~St~eAIelar~A---~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~V 216 (239)
.++.+.-.+.++.+++.+ .| ++||++ |=...+.++.++.++.| .+.|+.++.+-=-.|..+ .++-++..++|
T Consensus 260 ~~~~~~~~~~~~~~V~ac~ag-~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~--~~ea~~~~~~i 336 (348)
T PRK09250 260 KLTSDHPIDLVRYQVANCYMG-RRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRP--MAEGVKLLNAI 336 (348)
T ss_pred cccccchHHHHHHHHHhhccC-CceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCC--cHHHHHHHHHH
Confidence 345556667778888876 67 789776 44455889999999999 999999999998777655 55666777777
Q ss_pred Hhh
Q psy9602 217 GEA 219 (239)
Q Consensus 217 aea 219 (239)
.+-
T Consensus 337 ~~i 339 (348)
T PRK09250 337 QDV 339 (348)
T ss_pred HHH
Confidence 654
No 135
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=87.04 E-value=3.3 Score=40.85 Aligned_cols=97 Identities=11% Similarity=0.012 Sum_probs=63.0
Q ss_pred hhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHHhc----CCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCC
Q psy9602 124 RMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTEAK----THGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPE 198 (239)
Q Consensus 124 ~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~~~----G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP 198 (239)
...||.+++=-= ..+.-.+-..+||...+..+++.+. . +.-..+++++.++++.++.++.+++.|++++|+..-
T Consensus 170 ~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~-~~~y~~NiTa~~~~em~~ra~~a~~~G~~~~mv~~~ 248 (450)
T cd08212 170 CLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGE-VKGHYLNVTAGTMEEMYKRAEFAKELGSPIIMHDLL 248 (450)
T ss_pred HHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCC-cceeeccccCCCHHHHHHHHHHHHHhCCCeEeeecc
Confidence 344554544111 2345567778999888777766533 3 444556999999999999999999999999999832
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 199 LFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 199 ~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
. .. + .+...+..+... ++||..+
T Consensus 249 ~--G~-~---~l~~l~~~a~~~-~l~IhaH 271 (450)
T cd08212 249 T--GF-T---AIQSLAKWCRDN-GMLLHLH 271 (450)
T ss_pred c--cc-c---hHHHHHHHhhhc-CceEEec
Confidence 2 22 1 244444444455 6776554
No 136
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=86.96 E-value=1.6 Score=39.99 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecC------------------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHH
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQIG------------------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVE 207 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaGVg------------------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e 207 (239)
+|..+.++.+++. ++||+.+++ ....+++++.++..+++||+++.+--+ + +
T Consensus 117 ~~~~~~I~al~~a----gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v----~---~ 185 (264)
T PRK00311 117 EEVAETIKRLVER----GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV----P---A 185 (264)
T ss_pred HHHHHHHHHHHHC----CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----C---H
Confidence 3556666666643 688873332 223568999999999999999998743 2 1
Q ss_pred HHHHHHHHHHhhCCCCcEE
Q psy9602 208 DLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 208 ~iv~yf~~VaeatpdLPIi 226 (239)
+-.+.|.++. ++|+|
T Consensus 186 ---~~~~~i~~~l-~iP~i 200 (264)
T PRK00311 186 ---ELAKEITEAL-SIPTI 200 (264)
T ss_pred ---HHHHHHHHhC-CCCEE
Confidence 2346677777 68886
No 137
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=86.93 E-value=9 Score=35.55 Aligned_cols=83 Identities=16% Similarity=0.078 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCC-------CCC-CCC-CHHHHH
Q psy9602 142 SMTTAERKLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPE-------LFF-TPA-SVEDLV 210 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP-------~y~-~~~-s~e~iv 210 (239)
.||.+|..+.++.+...+ .+||++=+ |-.+..++.+.++...++|+.++.+--- |+- +.. +.++..
T Consensus 55 ~lt~~e~~~~~~~I~~~~---~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~ 131 (285)
T TIGR02317 55 ITTLDEVAEDARRITRVT---DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMV 131 (285)
T ss_pred CCCHHHHHHHHHHHHhcc---CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHH
Confidence 689999999999999887 58999943 3344889999999999999999999652 111 112 788999
Q ss_pred HHHHHHHhhCCCCcEEE
Q psy9602 211 DYLRDVGEAAPATPLFY 227 (239)
Q Consensus 211 ~yf~~VaeatpdLPIiL 227 (239)
...++..++..+.+++|
T Consensus 132 ~kI~Aa~~a~~~~d~~I 148 (285)
T TIGR02317 132 DKIAAAVDAKRDEDFVI 148 (285)
T ss_pred HHHHHHHHhccCCCEEE
Confidence 99999988764445554
No 138
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=86.90 E-value=17 Score=31.29 Aligned_cols=109 Identities=14% Similarity=-0.015 Sum_probs=63.9
Q ss_pred HHhhHHhhhcCCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q psy9602 117 LLVGITLRMAPIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLC 195 (239)
Q Consensus 117 l~~~v~~~~~gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV 195 (239)
....++..++.|.+ +-+.-..|-..+=..++-.+-+..+++.+.+..+.||+..+..+.++....++.|.++|||.+=.
T Consensus 71 k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKT 150 (203)
T cd00959 71 KVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKT 150 (203)
T ss_pred HHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEc
Confidence 33446666766654 32322333111112244555566666766542344577888888888999999999999999888
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 196 LPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 196 ~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
..-+.....+.+.+..+-+.+. . .+||.+-
T Consensus 151 sTG~~~~~at~~~v~~~~~~~~--~-~v~ik~a 180 (203)
T cd00959 151 STGFGPGGATVEDVKLMKEAVG--G-RVGVKAA 180 (203)
T ss_pred CCCCCCCCCCHHHHHHHHHHhC--C-CceEEEe
Confidence 7433322225565555444444 3 4676653
No 139
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=86.90 E-value=4.3 Score=37.13 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=42.7
Q ss_pred cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602 138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP 197 (239)
Q Consensus 138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P 197 (239)
|....-..+.-.++++.+.+.+ ++||++=+.. +..+..++++.++++|+|++.+..
T Consensus 146 G~~l~~~~~~~~~iv~~v~~~~---~~Pv~vKl~~-~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 146 GAAVGQDPELVEEICRWVREAV---KIPVIAKLTP-NITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred chhhccCHHHHHHHHHHHHHhc---CCCeEEECCC-CchhHHHHHHHHHHcCCCEEEEec
Confidence 4444456677777888877765 5799998765 455888999999999999998653
No 140
>PLN02591 tryptophan synthase
Probab=86.77 E-value=2.3 Score=38.63 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=55.0
Q ss_pred EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC----CH--
Q psy9602 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA----SV-- 206 (239)
Q Consensus 133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~----s~-- 206 (239)
..|.||+-..+. ++-.+.++.+.+.. ++||++|.|-.+.+++- .+.+.|||+++|-.-.. +.. +.
T Consensus 163 ~~GvTG~~~~~~-~~~~~~i~~vk~~~---~~Pv~vGFGI~~~e~v~----~~~~~GADGvIVGSalV-k~i~~~~~~~~ 233 (250)
T PLN02591 163 STGVTGARASVS-GRVESLLQELKEVT---DKPVAVGFGISKPEHAK----QIAGWGADGVIVGSAMV-KALGEAKSPEE 233 (250)
T ss_pred CCCCcCCCcCCc-hhHHHHHHHHHhcC---CCceEEeCCCCCHHHHH----HHHhcCCCEEEECHHHH-HhhhhccChhH
Confidence 489999987765 55677788888753 68999999987776654 46778999999986441 110 11
Q ss_pred --HHHHHHHHHHHhh
Q psy9602 207 --EDLVDYLRDVGEA 219 (239)
Q Consensus 207 --e~iv~yf~~Vaea 219 (239)
+.+.+|.+.+..+
T Consensus 234 ~~~~~~~~~~~l~~~ 248 (250)
T PLN02591 234 GLKRLEKLAKSLKAA 248 (250)
T ss_pred HHHHHHHHHHHHHhh
Confidence 4677777777553
No 141
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=86.76 E-value=8.5 Score=33.00 Aligned_cols=81 Identities=11% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy9602 143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPA 222 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatpd 222 (239)
++..=..++++.+.+.+...+..+++.-+..+.+.-.+.++.+...++|++++.|.. . +.....++.+.+ . +
T Consensus 9 ~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~---~---~~~~~~i~~~~~-~-~ 80 (273)
T cd06309 9 AESPWRTAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVV---E---TGWDPVLKEAKA-A-G 80 (273)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCc---c---ccchHHHHHHHH-C-C
Confidence 344445566666666655435777776666678888888999999999999998633 1 112223344444 4 7
Q ss_pred CcEEEEeCC
Q psy9602 223 TPLFYYHIP 231 (239)
Q Consensus 223 LPIiLYN~P 231 (239)
+|++++|..
T Consensus 81 iPvV~~~~~ 89 (273)
T cd06309 81 IPVILVDRG 89 (273)
T ss_pred CCEEEEecC
Confidence 999999964
No 142
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=86.73 E-value=8 Score=34.64 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=60.0
Q ss_pred CcCCCHHHHHHHHHHHHHHhcCCCceEEEe--cCCCCHHHHHHHHHHHHhCCCCEEEE----CCCC------CCCCCCHH
Q psy9602 140 GVSMTTAERKLNLEAWMTEAKTHGFTVMVQ--IGGTCFQEVVELAKHAESLNVHAVLC----LPEL------FFTPASVE 207 (239)
Q Consensus 140 ~~sLT~eER~~li~~vve~~~G~rvpVIaG--Vg~~St~eAIelar~A~~aGAdaVlV----~PP~------y~~~~s~e 207 (239)
...+|.+|....++.+...+ .+||++- .|..+..++.+.++...+.|++++.+ .|.. +... +.+
T Consensus 49 ~~~~~~~e~~~~~~~I~~~~---~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~-~~e 124 (243)
T cd00377 49 GGLLTLDEVLAAVRRIARAV---DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLV-PIE 124 (243)
T ss_pred CCcCCHHHHHHHHHHHHhhc---cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeec-CHH
Confidence 34678899999999999887 5799883 34447789999999999999999999 2111 1122 789
Q ss_pred HHHHHHHHHHhhC
Q psy9602 208 DLVDYLRDVGEAA 220 (239)
Q Consensus 208 ~iv~yf~~Vaeat 220 (239)
+..+-.+++.++.
T Consensus 125 e~~~ki~aa~~a~ 137 (243)
T cd00377 125 EFVAKIKAARDAR 137 (243)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998887
No 143
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=86.63 E-value=7.1 Score=36.37 Aligned_cols=81 Identities=11% Similarity=0.165 Sum_probs=54.4
Q ss_pred cCCCHHHH-HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCH-------------
Q psy9602 141 VSMTTAER-KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASV------------- 206 (239)
Q Consensus 141 ~sLT~eER-~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~------------- 206 (239)
...+.+++ .++++.+.+.+ ++||++=++.. ..+..+.++.++++|+|++.+..-.+-...+.
T Consensus 143 ~g~~~~~~~~eiv~~v~~~~---~iPv~vKl~p~-~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG 218 (325)
T cd04739 143 SGAEVEQRYLDILRAVKSAV---TIPVAVKLSPF-FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSS 218 (325)
T ss_pred ccchHHHHHHHHHHHHHhcc---CCCEEEEcCCC-ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCC
Confidence 34444444 46777777665 57999987653 45789999999999999999977542111010
Q ss_pred ----HHHHHHHHHHHhhCCCCcEE
Q psy9602 207 ----EDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 207 ----e~iv~yf~~VaeatpdLPIi 226 (239)
.-..++...+.... ++||+
T Consensus 219 ~~~~~~al~~v~~v~~~~-~ipIi 241 (325)
T cd04739 219 PAEIRLPLRWIAILSGRV-KASLA 241 (325)
T ss_pred ccchhHHHHHHHHHHccc-CCCEE
Confidence 12356677788777 78887
No 144
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.50 E-value=4.9 Score=37.74 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHHhcC-------CCceEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--CHH
Q psy9602 144 TTAERKLNLEAWMTEAKT-------HGFTVMVQIG-------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPA--SVE 207 (239)
Q Consensus 144 T~eER~~li~~vve~~~G-------~rvpVIaGVg-------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--s~e 207 (239)
|.+-|.+++..+++.+.. .+++|.+=++ +.+.++.+++++.+++.|+|.+-|....+.... ...
T Consensus 189 slenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~ 268 (353)
T cd04735 189 SLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRD 268 (353)
T ss_pred cHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCc
Confidence 356666666555554432 1345544333 346799999999999999999999875442220 111
Q ss_pred HHHHHHHHHHhhC-CCCcEEE
Q psy9602 208 DLVDYLRDVGEAA-PATPLFY 227 (239)
Q Consensus 208 ~iv~yf~~Vaeat-pdLPIiL 227 (239)
.-..+.+.+.+.. +++||+.
T Consensus 269 ~~~~~~~~ik~~~~~~iPVi~ 289 (353)
T cd04735 269 DNQTIMELVKERIAGRLPLIA 289 (353)
T ss_pred chHHHHHHHHHHhCCCCCEEE
Confidence 1233444454443 2688775
No 145
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.47 E-value=7.5 Score=33.98 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCCceEE-EecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 150 LNLEAWMTEAKTHGFTVM-VQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 150 ~li~~vve~~~G~rvpVI-aGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
++++.+.+.+...+.-++ +..+..+.+..++..+.+...++|++++.|. +.+...+.++.+.+ . ++|++++
T Consensus 16 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~------~~~~~~~~i~~~~~-~-~iPvV~~ 87 (294)
T cd06316 16 AQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPV------DPVSTAAAYKKVAE-A-GIKLVFM 87 (294)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCC------CchhhhHHHHHHHH-c-CCcEEEe
Confidence 344444343333245555 4566667887888888888899999998742 11223445666655 4 7999999
Q ss_pred eCC
Q psy9602 229 HIP 231 (239)
Q Consensus 229 N~P 231 (239)
|.+
T Consensus 88 ~~~ 90 (294)
T cd06316 88 DNV 90 (294)
T ss_pred cCC
Confidence 985
No 146
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.46 E-value=9.5 Score=32.58 Aligned_cols=77 Identities=12% Similarity=-0.000 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcC--CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCc
Q psy9602 147 ERKLNLEAWMTEAKT--HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATP 224 (239)
Q Consensus 147 ER~~li~~vve~~~G--~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLP 224 (239)
=+.++++.+.+.+.. .+.-++...+..+.+.-.+..+.+.+.++|++++.|.. .+......+.+.+ . ++|
T Consensus 13 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~------~~~~~~~i~~~~~-~-~ip 84 (271)
T cd06321 13 FFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVD------SKGIAPAVKRAQA-A-GIV 84 (271)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCC------hhHhHHHHHHHHH-C-CCe
Confidence 334455444444333 34556555556666666777777888888888887522 1222334445444 4 688
Q ss_pred EEEEeCC
Q psy9602 225 LFYYHIP 231 (239)
Q Consensus 225 IiLYN~P 231 (239)
++++|.+
T Consensus 85 vv~~~~~ 91 (271)
T cd06321 85 VVAVDVA 91 (271)
T ss_pred EEEecCC
Confidence 8888865
No 147
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=86.43 E-value=2.5 Score=40.41 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHHh-------cCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHH
Q psy9602 143 MTTAERKLNLEAWMTEA-------KTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRD 215 (239)
Q Consensus 143 LT~eER~~li~~vve~~-------~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~ 215 (239)
++.+|+.+.++.+.... ++ +..|-+.|+. .++..+.++...++|+|.+++-..+.+ .+.+++..+.
T Consensus 70 ~~~e~q~~~v~~vK~~~~~a~~d~~~-~l~V~aavg~--~~~~~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ 142 (352)
T PF00478_consen 70 MSIEEQAEEVKKVKRYYPNASKDEKG-RLLVAAAVGT--RDDDFERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKK 142 (352)
T ss_dssp SCHHHHHHHHHHHHTHHTTHHBHTTS-CBCEEEEEES--STCHHHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHH
T ss_pred CCHHHHHHHHhhhccccccccccccc-cceEEEEecC--CHHHHHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHH
Confidence 78899999999887542 33 4555554443 335677888888899999999877753 3667788888
Q ss_pred HHhhCCCCcEEEEeC
Q psy9602 216 VGEAAPATPLFYYHI 230 (239)
Q Consensus 216 VaeatpdLPIiLYN~ 230 (239)
|-+..|++|||.=|.
T Consensus 143 ik~~~~~~~viaGNV 157 (352)
T PF00478_consen 143 IKKKFPDVPVIAGNV 157 (352)
T ss_dssp HHHHSTTSEEEEEEE
T ss_pred HHHhCCCceEEeccc
Confidence 889998899998775
No 148
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=86.28 E-value=7.8 Score=34.89 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC--CC----------CCCCCCHHHH
Q psy9602 142 SMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP--EL----------FFTPASVEDL 209 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P--P~----------y~~~~s~e~i 209 (239)
.+..|+-.+.++.-...+.. +.|+++++++.+.++.++.++.+++ ++|++=+-. |. +... +++-+
T Consensus 47 ~~~~e~~~~~i~~e~~~~~~-~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~-dp~~l 123 (231)
T TIGR00736 47 SFNLEEFNSYIIEQIKKAES-RALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLK-NKELL 123 (231)
T ss_pred CcCcccHHHHHHHHHHHHhh-cCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcC-CHHHH
Confidence 35555566666666666665 7899999999999999999999977 899988753 22 1222 77888
Q ss_pred HHHHHHHHhhCCCCcEEEEeCC
Q psy9602 210 VDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 210 v~yf~~VaeatpdLPIiLYN~P 231 (239)
.+..+++.+ . +.||.+==-|
T Consensus 124 ~~iv~av~~-~-~~PVsvKiR~ 143 (231)
T TIGR00736 124 KEFLTKMKE-L-NKPIFVKIRG 143 (231)
T ss_pred HHHHHHHHc-C-CCcEEEEeCC
Confidence 899999984 5 7888775444
No 149
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=86.26 E-value=3.9 Score=35.60 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 175 FQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 175 t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
..+.+++++.+++.|+|.+++..-.--.. .+.--+++++.+.+.+ ++||+.
T Consensus 152 ~~~~~~~~~~~~~~G~d~i~i~~i~~~g~-~~g~~~~~~~~i~~~~-~ipvia 202 (232)
T TIGR03572 152 GRDPVEWAREAEQLGAGEILLNSIDRDGT-MKGYDLELIKTVSDAV-SIPVIA 202 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCCCccCC-cCCCCHHHHHHHHhhC-CCCEEE
Confidence 34578999999999999999997221111 1112378889999988 899875
No 150
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=86.25 E-value=3 Score=38.20 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=56.4
Q ss_pred hcCCC-CEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Q psy9602 125 MAPII-DQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP 203 (239)
Q Consensus 125 ~~gg~-glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~ 203 (239)
.+.|. ++.+.|+.|....-.. --.+++..+.+.+.+ ++|||+.=+=.+-.++++.. .+|||+|++.-|+.+..
T Consensus 190 ~~~G~d~I~v~~~gG~~~~~g~-~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d~~kal----~lGAd~V~ig~~~l~~~ 263 (299)
T cd02809 190 VDAGADGIVVSNHGGRQLDGAP-ATIDALPEIVAAVGG-RIEVLLDGGIRRGTDVLKAL----ALGADAVLIGRPFLYGL 263 (299)
T ss_pred HHCCCCEEEEcCCCCCCCCCCc-CHHHHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHH----HcCCCEEEEcHHHHHHH
Confidence 44444 5678787765322111 124455556666665 69998755555566655544 48999999999986543
Q ss_pred C--CHHHHHHHHHHHHhh
Q psy9602 204 A--SVEDLVDYLRDVGEA 219 (239)
Q Consensus 204 ~--s~e~iv~yf~~Vaea 219 (239)
. .++.+.++++.+.+.
T Consensus 264 ~~~g~~~v~~~i~~l~~e 281 (299)
T cd02809 264 AAGGEAGVAHVLEILRDE 281 (299)
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 1 567777777776664
No 151
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=86.21 E-value=6.9 Score=34.36 Aligned_cols=102 Identities=21% Similarity=0.194 Sum_probs=65.9
Q ss_pred hhHHhhhcCCCC-E--EEe-ccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHH---------HHHHHHHH
Q psy9602 119 VGITLRMAPIID-Q--MVN-GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQE---------VVELAKHA 185 (239)
Q Consensus 119 ~~v~~~~~gg~g-l--vV~-GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~e---------AIelar~A 185 (239)
..++..++.|.. + +++ |..+... .++-.+.+..+++.+.+..+|+|+= .-..-.+ ....++.|
T Consensus 80 ~~ve~A~~~GAd~vd~vi~~~~~~~~~---~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria 155 (236)
T PF01791_consen 80 AEVEEAIRLGADEVDVVINYGALGSGN---EDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIA 155 (236)
T ss_dssp HHHHHHHHTT-SEEEEEEEHHHHHTTH---HHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCceeeeecccccccccc---HHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHH
Confidence 345666665553 3 222 2223322 5666777777777776657999987 4444444 68888999
Q ss_pred HhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCc----EEE
Q psy9602 186 ESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATP----LFY 227 (239)
Q Consensus 186 ~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLP----IiL 227 (239)
.++|||.+=...|.. .. ...+-.+-|+.+.+.+ +.| |.+
T Consensus 156 ~e~GaD~vKt~tg~~-~~-~t~~~~~~~~~~~~~~-~~p~~~~Vk~ 198 (236)
T PF01791_consen 156 AELGADFVKTSTGKP-VG-ATPEDVELMRKAVEAA-PVPGKVGVKA 198 (236)
T ss_dssp HHTT-SEEEEE-SSS-SC-SHHHHHHHHHHHHHTH-SSTTTSEEEE
T ss_pred HHhCCCEEEecCCcc-cc-ccHHHHHHHHHHHHhc-CCCcceEEEE
Confidence 999999999999955 44 5555566678888877 577 665
No 152
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=86.05 E-value=6.2 Score=36.21 Aligned_cols=58 Identities=12% Similarity=0.007 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-CHHHHH----HHHHHHHhhCCCCcEEEEeCC
Q psy9602 174 CFQEVVELAKHAESLNVHAVLCLPELFFTPA-SVEDLV----DYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 174 St~eAIelar~A~~aGAdaVlV~PP~y~~~~-s~e~iv----~yf~~VaeatpdLPIiLYN~P 231 (239)
-++-.+++++...++|||++.+..|...... +++... -|++.|.+...+.|+++|.+-
T Consensus 169 it~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~cG 231 (326)
T cd03307 169 LTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHICG 231 (326)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 3555678888888899999999888643222 666665 556888888722488887654
No 153
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=85.81 E-value=9.7 Score=35.39 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=58.5
Q ss_pred cCCCHHHHHHHHHHHHHHhc--CCCceEEEecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCC----------------C
Q psy9602 141 VSMTTAERKLNLEAWMTEAK--THGFTVMVQIGGT-CFQEVVELAKHAESLNVHAVLCLPELF----------------F 201 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~--G~rvpVIaGVg~~-St~eAIelar~A~~aGAdaVlV~PP~y----------------~ 201 (239)
..-..+.-.++++.+.+.++ +.++||++=++.. +.++..++++.++++|+|++.+..... +
T Consensus 178 ~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~ 257 (327)
T cd04738 178 DLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGL 257 (327)
T ss_pred cccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCcc
Confidence 34455666788888888874 1148999988743 335788999999999999999876321 1
Q ss_pred CC-CCHHHHHHHHHHHHhhCC-CCcEEE
Q psy9602 202 TP-ASVEDLVDYLRDVGEAAP-ATPLFY 227 (239)
Q Consensus 202 ~~-~s~e~iv~yf~~Vaeatp-dLPIiL 227 (239)
.. .......++...+.+..+ ++||+-
T Consensus 258 sG~~~~~~~l~~v~~l~~~~~~~ipIi~ 285 (327)
T cd04738 258 SGAPLKERSTEVLRELYKLTGGKIPIIG 285 (327)
T ss_pred CChhhhHHHHHHHHHHHHHhCCCCcEEE
Confidence 10 011133677788887764 578773
No 154
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=85.71 E-value=5.6 Score=36.98 Aligned_cols=74 Identities=11% Similarity=0.167 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCH-----------------HHHH
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASV-----------------EDLV 210 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~-----------------e~iv 210 (239)
..++++.+.+.+ ++||++=.+. ...+..+.++.++++|+|+|.+..-.+....+. ....
T Consensus 153 ~~eil~~v~~~~---~iPV~vKl~p-~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al 228 (334)
T PRK07565 153 YLDILRAVKSAV---SIPVAVKLSP-YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPL 228 (334)
T ss_pred HHHHHHHHHhcc---CCcEEEEeCC-CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHH
Confidence 446777777664 5899998765 345788999999999999999876543111011 1234
Q ss_pred HHHHHHHhhCCCCcEE
Q psy9602 211 DYLRDVGEAAPATPLF 226 (239)
Q Consensus 211 ~yf~~VaeatpdLPIi 226 (239)
++...+.++. ++||+
T Consensus 229 ~~v~~~~~~~-~ipIi 243 (334)
T PRK07565 229 RWIAILSGRV-GADLA 243 (334)
T ss_pred HHHHHHHhhc-CCCEE
Confidence 6677777777 78877
No 155
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=85.65 E-value=8.7 Score=35.25 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=56.4
Q ss_pred cCCCCEE-Ee-ccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Q psy9602 126 APIIDQM-VN-GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP 203 (239)
Q Consensus 126 ~gg~glv-V~-GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~ 203 (239)
+-|+..+ ++ ...|-+..++..| +++.+++.. ++|||++-+=.+.+++ ..|.++|||+|++-.-..-..
T Consensus 142 ~~G~~~vmPlg~pIGsg~Gi~~~~---~I~~I~e~~---~vpVI~egGI~tpeda----~~AmelGAdgVlV~SAIt~a~ 211 (248)
T cd04728 142 DAGCAAVMPLGSPIGSGQGLLNPY---NLRIIIERA---DVPVIVDAGIGTPSDA----AQAMELGADAVLLNTAIAKAK 211 (248)
T ss_pred HcCCCEeCCCCcCCCCCCCCCCHH---HHHHHHHhC---CCcEEEeCCCCCHHHH----HHHHHcCCCEEEEChHhcCCC
Confidence 3355544 32 3455556776644 444556652 5899998777666665 556779999999998766444
Q ss_pred CCHHHHHHHHHHHHhh
Q psy9602 204 ASVEDLVDYLRDVGEA 219 (239)
Q Consensus 204 ~s~e~iv~yf~~Vaea 219 (239)
++..+-..|..-.++
T Consensus 212 -dP~~ma~af~~Av~a 226 (248)
T cd04728 212 -DPVAMARAFKLAVEA 226 (248)
T ss_pred -CHHHHHHHHHHHHHH
Confidence 788888888876654
No 156
>PLN02433 uroporphyrinogen decarboxylase
Probab=85.57 E-value=9.9 Score=35.45 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHH----HHHHhhC----CCCcEEEEeC
Q psy9602 174 CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYL----RDVGEAA----PATPLFYYHI 230 (239)
Q Consensus 174 St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf----~~Vaeat----pdLPIiLYN~ 230 (239)
.++..+++++...++||+.+.+.-|..... +++...+|. +.|.++. |+.|+++|.+
T Consensus 177 it~~~~~~~~~~ieaGa~~i~i~d~~~~~l-sp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c 240 (345)
T PLN02433 177 LTDAVIEYVDYQIDAGAQVVQIFDSWAGHL-SPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN 240 (345)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCccccC-CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 456677888888889999998887754333 777766444 5666554 3468888754
No 157
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=85.54 E-value=11 Score=33.54 Aligned_cols=76 Identities=14% Similarity=0.030 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhC--CCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESL--NVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL 225 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~a--GAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI 225 (239)
+..+++.+.+.+...+.-+++..+..+.+...+..+...+. ++|++++.|... . ....++.+.+ . ++||
T Consensus 15 ~~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~--~-----~~~~~~~~~~-~-giPv 85 (305)
T cd06324 15 WNSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKS--V-----APELLRLAEG-A-GVKL 85 (305)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCcc--c-----hHHHHHHHHh-C-CCeE
Confidence 34444444443332245566655666788888899999998 999999975321 1 1223455554 4 7999
Q ss_pred EEEeCCC
Q psy9602 226 FYYHIPM 232 (239)
Q Consensus 226 iLYN~P~ 232 (239)
+++|.+.
T Consensus 86 V~~~~~~ 92 (305)
T cd06324 86 FLVNSGL 92 (305)
T ss_pred EEEecCC
Confidence 9999754
No 158
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=85.53 E-value=8.7 Score=34.45 Aligned_cols=62 Identities=11% Similarity=0.129 Sum_probs=49.9
Q ss_pred eEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCc
Q psy9602 165 TVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234 (239)
Q Consensus 165 pVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~T 234 (239)
.++..-...+....+..++.+...|+|+++|.|+ +...+..-.+...++ ++||+.+|.+...
T Consensus 67 ~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~------d~~~~~~~v~~a~~a--GIpVv~~d~~~~~ 128 (322)
T COG1879 67 AVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPV------DPDALTPAVKKAKAA--GIPVVTVDSDIPG 128 (322)
T ss_pred EEEecccccChHHHHHHHHHHHHcCCCEEEEcCC------ChhhhHHHHHHHHHC--CCcEEEEecCCCC
Confidence 3444555688899999999999999999999975 456778888888876 7999999997543
No 159
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=85.52 E-value=7.2 Score=35.11 Aligned_cols=81 Identities=16% Similarity=0.103 Sum_probs=60.2
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEec--C-CCCHHHHHHHHHHHHhCCCCEEEECCC---CCCCCC-CHHHHHHHH
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQI--G-GTCFQEVVELAKHAESLNVHAVLCLPE---LFFTPA-SVEDLVDYL 213 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIaGV--g-~~St~eAIelar~A~~aGAdaVlV~PP---~y~~~~-s~e~iv~yf 213 (239)
-.||.+|..+.++.++..+ ++||++=+ | +++..++.+.++...++|+.++.+--- +-.+.. +.++..+..
T Consensus 50 ~~lt~~e~~~~~~~I~~~~---~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI 126 (238)
T PF13714_consen 50 GLLTLTEMLAAVRRIARAV---SIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKI 126 (238)
T ss_dssp S-S-HHHHHHHHHHHHHHS---SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhh---cCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHH
Confidence 5789999999999999987 58999944 3 445899999999999999999999764 111112 789999999
Q ss_pred HHHHhhCCCCc
Q psy9602 214 RDVGEAAPATP 224 (239)
Q Consensus 214 ~~VaeatpdLP 224 (239)
++..++..+..
T Consensus 127 ~Aa~~a~~~~~ 137 (238)
T PF13714_consen 127 RAAVDARRDPD 137 (238)
T ss_dssp HHHHHHHSSTT
T ss_pred HHHHHhccCCe
Confidence 99988763333
No 160
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=85.50 E-value=16 Score=32.84 Aligned_cols=96 Identities=22% Similarity=0.193 Sum_probs=59.7
Q ss_pred hHHhhhcCCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe-------c-CCCCHHHHHHHHHHHHhCCC
Q psy9602 120 GITLRMAPIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ-------I-GGTCFQEVVELAKHAESLNV 190 (239)
Q Consensus 120 ~v~~~~~gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG-------V-g~~St~eAIelar~A~~aGA 190 (239)
.++..++.|.. +-+.--.| .+..++..+.++.+++.+...++|+++- + ...+.++..+.++.|.++||
T Consensus 98 ~ve~A~~~Gad~v~~~~~~g---~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GA 174 (267)
T PRK07226 98 TVEEAIKLGADAVSVHVNVG---SETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGA 174 (267)
T ss_pred cHHHHHHcCCCEEEEEEecC---ChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCC
Confidence 35556676654 32221222 2335677777877877765336888874 2 33444555666799999999
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
|.+=.. | .. + .+.++.+.+.+ .+||+.-
T Consensus 175 D~vKt~---~-~~-~----~~~l~~~~~~~-~ipV~a~ 202 (267)
T PRK07226 175 DIVKTN---Y-TG-D----PESFREVVEGC-PVPVVIA 202 (267)
T ss_pred CEEeeC---C-CC-C----HHHHHHHHHhC-CCCEEEE
Confidence 999554 2 22 2 46677888777 6898653
No 161
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=85.48 E-value=4.3 Score=38.05 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=48.0
Q ss_pred CcCCCHHHHH----------HHHHHHHHHhcCCCceEE-EecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHH
Q psy9602 140 GVSMTTAERK----------LNLEAWMTEAKTHGFTVM-VQIGGT-CFQEVVELAKHAESLNVHAVLCLPELFFTPASVE 207 (239)
Q Consensus 140 ~~sLT~eER~----------~li~~vve~~~G~rvpVI-aGVg~~-St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e 207 (239)
...+|.+|.. ++++.+++.. ++||| +..|+- +.+++. .+.++||++++|..-.+-.. ++.
T Consensus 173 L~gyt~~~~~~~a~~~~~~~elL~ei~~~~---~iPVV~~AeGGI~TPedaa----~vme~GAdgVaVGSaI~ks~-dP~ 244 (293)
T PRK04180 173 LTSMSEDELYTAAKELQAPYELVKEVAELG---RLPVVNFAAGGIATPADAA----LMMQLGADGVFVGSGIFKSG-DPE 244 (293)
T ss_pred HhCCCHHHHHhhccccCCCHHHHHHHHHhC---CCCEEEEEeCCCCCHHHHH----HHHHhCCCEEEEcHHhhcCC-CHH
Confidence 4556666633 4566666643 68998 677777 444433 33458999999998666555 777
Q ss_pred HHHHHHHHHHhhC
Q psy9602 208 DLVDYLRDVGEAA 220 (239)
Q Consensus 208 ~iv~yf~~Vaeat 220 (239)
.....|.......
T Consensus 245 ~~akafv~ai~~~ 257 (293)
T PRK04180 245 KRARAIVEATTHY 257 (293)
T ss_pred HHHHHHHHHHHHc
Confidence 7777666665554
No 162
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=85.42 E-value=7 Score=36.70 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCC--CceEEEecCCCC-HHHHHHHHHHHHhCCCCEEEECCCCCCC-------------CCC
Q psy9602 142 SMTTAERKLNLEAWMTEAKTH--GFTVMVQIGGTC-FQEVVELAKHAESLNVHAVLCLPELFFT-------------PAS 205 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~--rvpVIaGVg~~S-t~eAIelar~A~~aGAdaVlV~PP~y~~-------------~~s 205 (239)
.-..+.-.++++.+.+.++.. ++||++=++.+. .++..+.++.++++|+|++.+.....-. ..+
T Consensus 188 ~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~S 267 (344)
T PRK05286 188 LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLS 267 (344)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcc
Confidence 334555667888888887510 289999888543 3479999999999999999998753210 001
Q ss_pred -H---HHHHHHHHHHHhhCC-CCcEE
Q psy9602 206 -V---EDLVDYLRDVGEAAP-ATPLF 226 (239)
Q Consensus 206 -~---e~iv~yf~~Vaeatp-dLPIi 226 (239)
. ....++...+.++.+ ++||+
T Consensus 268 G~~~~~~~l~~v~~l~~~~~~~ipIi 293 (344)
T PRK05286 268 GRPLFERSTEVIRRLYKELGGRLPII 293 (344)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 1 124456777777663 47876
No 163
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=85.40 E-value=3 Score=40.13 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=52.6
Q ss_pred HhhhcCCC-CEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec-CCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 122 TLRMAPII-DQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI-GGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 122 ~~~~~gg~-glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV-g~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
+...+.+. ++.+.|...+ ..-.++++.+.+. ..++++|+ +..+ .++.++.+.++|+|.+.+.|-+
T Consensus 75 ~~a~~aGAdgV~v~g~~~~------~~~~~~i~~a~~~----G~~~~~g~~s~~t---~~e~~~~a~~~GaD~I~~~pg~ 141 (430)
T PRK07028 75 EMAAKAGADIVCILGLADD------STIEDAVRAARKY----GVRLMADLINVPD---PVKRAVELEELGVDYINVHVGI 141 (430)
T ss_pred HHHHHcCCCEEEEecCCCh------HHHHHHHHHHHHc----CCEEEEEecCCCC---HHHHHHHHHhcCCCEEEEEecc
Confidence 34455555 4555654321 1223455555542 46888874 3333 3456788889999999877532
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 200 FFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 200 y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
.-.. ......++++.+.+.. ++||++
T Consensus 142 ~~~~-~~~~~~~~l~~l~~~~-~iPI~a 167 (430)
T PRK07028 142 DQQM-LGKDPLELLKEVSEEV-SIPIAV 167 (430)
T ss_pred chhh-cCCChHHHHHHHHhhC-CCcEEE
Confidence 1111 1123356888888887 689876
No 164
>PRK08999 hypothetical protein; Provisional
Probab=85.35 E-value=4.8 Score=36.49 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=59.2
Q ss_pred hhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE------------------------------------
Q psy9602 123 LRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV------------------------------------ 166 (239)
Q Consensus 123 ~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpV------------------------------------ 166 (239)
..++++...+.+= -..++.+|..++++.+.+.+...++++
T Consensus 152 ~~l~~g~~~vqlR----~k~~~~~~~~~~~~~l~~~~~~~~~~liind~~~la~~~~~~GvHl~~~d~~~~~~r~~~~~~ 227 (312)
T PRK08999 152 RALAAGIRLIQLR----APQLPPAAYRALARAALGLCRRAGAQLLLNGDPELAEDLGADGVHLTSAQLAALAARPLPAGR 227 (312)
T ss_pred HHHHCCCcEEEEe----CCCCCHHHHHHHHHHHHHHHHHhCCEEEEECcHHHHHhcCCCEEEcChhhcChHhhccCCCCC
Confidence 3456666555442 224677777777777776544323333
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC--CCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF--FTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y--~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
++|++..+.++ ++.|.+.|+|.+.+.|-+- .++..+.-=.+.++.+++.+ ++||+.
T Consensus 228 ~ig~S~h~~~~----~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~-~~Pv~A 285 (312)
T PRK08999 228 WVAASCHDAEE----LARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV-PLPVYA 285 (312)
T ss_pred EEEEecCCHHH----HHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC-CCCEEE
Confidence 45677666665 4567788999999998542 22201111257788888888 899875
No 165
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=85.33 E-value=12 Score=31.85 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhcC-CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCc
Q psy9602 146 AERKLNLEAWMTEAKT-HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATP 224 (239)
Q Consensus 146 eER~~li~~vve~~~G-~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLP 224 (239)
.=+.++++-+.+++.. .++-+++..+..+.+...+..+.+.+.++|++++.|+.. +...+.++.+.+ . ++|
T Consensus 12 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~------~~~~~~~~~l~~-~-~iP 83 (272)
T cd06301 12 NFLTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDT------AATAPIVKAANA-A-GIP 83 (272)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCch------hhhHHHHHHHHH-C-CCe
Confidence 3345555555554443 357788777777888889999999999999999987542 112334455544 4 799
Q ss_pred EEEEeCC
Q psy9602 225 LFYYHIP 231 (239)
Q Consensus 225 IiLYN~P 231 (239)
+++++.+
T Consensus 84 vv~~~~~ 90 (272)
T cd06301 84 LVYVNRR 90 (272)
T ss_pred EEEecCC
Confidence 9999874
No 166
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=85.32 E-value=5.3 Score=37.40 Aligned_cols=81 Identities=9% Similarity=0.062 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEE----ecCC-CCHHHHHHHHHHHHhCCCCEEEECCCCC----CCCCC-----HHH
Q psy9602 143 MTTAERKLNLEAWMTEAKTHGFTVMV----QIGG-TCFQEVVELAKHAESLNVHAVLCLPELF----FTPAS-----VED 208 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G~rvpVIa----GVg~-~St~eAIelar~A~~aGAdaVlV~PP~y----~~~~s-----~e~ 208 (239)
-..+-=.++++.+.+.+ .+||.+ |+.. .+..+++++++.++++|+|++.+..-.. +.+ . ...
T Consensus 116 ~~p~~~~eiv~avr~~v---~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~-~~~~~~~~~ 191 (333)
T PRK11815 116 AEPELVADCVKAMKDAV---SIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSP-KENREIPPL 191 (333)
T ss_pred cCHHHHHHHHHHHHHHc---CCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCc-cccccCCCc
Confidence 34444556666666655 356665 5543 3457889999999999999999875321 111 0 112
Q ss_pred HHHHHHHHHhhCCCCcEEE
Q psy9602 209 LVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 209 iv~yf~~VaeatpdLPIiL 227 (239)
-.+++..|.+.++++||+.
T Consensus 192 ~~~~i~~v~~~~~~iPVI~ 210 (333)
T PRK11815 192 DYDRVYRLKRDFPHLTIEI 210 (333)
T ss_pred CHHHHHHHHHhCCCCeEEE
Confidence 2567778888755789753
No 167
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=85.28 E-value=13 Score=34.43 Aligned_cols=75 Identities=19% Similarity=0.121 Sum_probs=59.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEec-CCCCHHHHHHHHHHHHhCCCCEEEE----CCCC---------CCCCCCH
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQI-GGTCFQEVVELAKHAESLNVHAVLC----LPEL---------FFTPASV 206 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIaGV-g~~St~eAIelar~A~~aGAdaVlV----~PP~---------y~~~~s~ 206 (239)
-.||.+|....++.+...+ .+||++-. ++.+..++.+.++...++|+.++.+ .|.. .... +.
T Consensus 59 ~~~~~~e~~~~~~~I~~a~---~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~-s~ 134 (285)
T TIGR02320 59 EEASWTQRLDVVEFMFDVT---TKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQA-SV 134 (285)
T ss_pred CcCCHHHHHHHHHHHHhhc---CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCccccc-CH
Confidence 4689999999999998877 58999944 2268889999999999999999999 3321 0112 78
Q ss_pred HHHHHHHHHHHhh
Q psy9602 207 EDLVDYLRDVGEA 219 (239)
Q Consensus 207 e~iv~yf~~Vaea 219 (239)
++..+-.+++.++
T Consensus 135 ee~~~kI~Aa~~a 147 (285)
T TIGR02320 135 EEFCGKIRAGKDA 147 (285)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999998776
No 168
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=85.26 E-value=5.3 Score=37.06 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=61.7
Q ss_pred hhhcCCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE-------------ecCC-CCHHHHHHHHHHHHh
Q psy9602 123 LRMAPIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV-------------QIGG-TCFQEVVELAKHAES 187 (239)
Q Consensus 123 ~~~~gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa-------------GVg~-~St~eAIelar~A~~ 187 (239)
..+++|.. +++=|+ .|+.+|-.++.+.+++.+...+++|=+ |.+. ++.++ ++.+.+
T Consensus 94 ~ai~~GftSVm~d~S-----~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~pee----a~~f~~ 164 (293)
T PRK07315 94 ECIEVGYTSIMFDGS-----HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIED----AKAMVE 164 (293)
T ss_pred HHHHcCCCEEEEcCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHH----HHHHHH
Confidence 34565554 455554 688999999999999987654555533 2222 34444 444457
Q ss_pred CCCCEEEEC--CCCCCCCC-CHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 188 LNVHAVLCL--PELFFTPA-SVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 188 aGAdaVlV~--PP~y~~~~-s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
.|+|.+-+. |-|...+. +..-=++.++.|.+.++++|+++.=
T Consensus 165 tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhG 209 (293)
T PRK07315 165 TGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHG 209 (293)
T ss_pred cCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEEC
Confidence 899999998 55321110 1222355788888887459998863
No 169
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=85.24 E-value=14 Score=36.92 Aligned_cols=100 Identities=11% Similarity=0.016 Sum_probs=66.9
Q ss_pred HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE---ecCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602 121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV---QIGGTCFQEVVELAKHAESLNVHAVLCL 196 (239)
Q Consensus 121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa---GVg~~St~eAIelar~A~~aGAdaVlV~ 196 (239)
++...+.|.+++ ++-...+. +-....++.+.+ ++. .+-..+ +....+.+..+++++.+.++|||.+.+-
T Consensus 103 v~~a~~~Gidi~RIfd~lndv-----~nl~~ai~~vk~-ag~-~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~Ik 175 (499)
T PRK12330 103 VEKSAENGMDVFRVFDALNDP-----RNLEHAMKAVKK-VGK-HAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIK 175 (499)
T ss_pred HHHHHHcCCCEEEEEecCChH-----HHHHHHHHHHHH-hCC-eEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 455567777765 66555444 333333443333 332 221111 2235678899999999999999999888
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCC-CCcEEEEe
Q psy9602 197 PELFFTPASVEDLVDYLRDVGEAAP-ATPLFYYH 229 (239)
Q Consensus 197 PP~y~~~~s~e~iv~yf~~Vaeatp-dLPIiLYN 229 (239)
...... +++++.+.++.|-++.| ++||-++-
T Consensus 176 DtaGll--~P~~~~~LV~~Lk~~~~~~ipI~~H~ 207 (499)
T PRK12330 176 DMAALL--KPQPAYDIVKGIKEACGEDTRINLHC 207 (499)
T ss_pred CCccCC--CHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 766533 78999999999999985 78987653
No 170
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=85.18 E-value=5.4 Score=37.19 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=71.1
Q ss_pred CccccceEEEeehhhHHH------HHHHHhhHHhhhcCCCCE-EEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE
Q psy9602 96 LPKRAKWTIIITAGLLLL------TCMLLVGITLRMAPIIDQ-MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV 168 (239)
Q Consensus 96 l~~~~~W~iv~~A~~~~~------~~~l~~~v~~~~~gg~gl-vV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa 168 (239)
+-...++-+++.|++... +..|+..+. + .|+ +..|+.+-+ .++ .|..+-++.+.+... ..|+++
T Consensus 47 ~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~---~--~g~~~~~Gs~~~~-~~~-~e~~~~~~~vr~~~~--~~p~~~ 117 (326)
T cd02811 47 LGKRLSAPLLISAMTGGSEKAKEINRNLAEAAE---E--LGIAMGVGSQRAA-LED-PELAESFTVVREAPP--NGPLIA 117 (326)
T ss_pred CCceecCCEEEeCCCCCChHHHHHHHHHHHHHH---H--cCCCeEecCchhh-ccC-hhhhhHHHHHHHhCC--CceEEe
Confidence 556688888988888764 344433321 1 221 334433322 334 555577777776654 479999
Q ss_pred ecCCCCHH--HHHHHHHHHHhCCCCEEEECCCC--C-CCCC---CHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 169 QIGGTCFQ--EVVELAKHAESLNVHAVLCLPEL--F-FTPA---SVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 169 GVg~~St~--eAIelar~A~~aGAdaVlV~PP~--y-~~~~---s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
.++..... ..-+..+..+.++||++-+--.. - ..+. +.+.+++..+.|.+.+ +.||++=-.+
T Consensus 118 Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~-~vPVivK~~g 187 (326)
T cd02811 118 NLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL-SVPVIVKEVG 187 (326)
T ss_pred ecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEecC
Confidence 88875421 12222223333466777664321 0 1111 3445668889999998 8999986543
No 171
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=85.15 E-value=13 Score=27.55 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=46.0
Q ss_pred EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-CH
Q psy9602 131 QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCLPELFFTPA-SV 206 (239)
Q Consensus 131 lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~-s~ 206 (239)
+++.|+.+-..+=..+.-.++.+.+.+..+ ..++.++.. ..+++++++ ...+.|++-+++.|.+.+... ..
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~--~~~v~~a~~~~~~P~i~~~l~---~l~~~g~~~vvvvPl~~~~g~h~~ 76 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLP--DFPYYVGFQSGLGPDTEEAIR---ELAEEGYQRVVIVPLAPVSGDEVF 76 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCHHHHHH---HHHHcCCCeEEEEeCccccChhhH
Confidence 445555444332233445555555555543 346666543 456665544 455669999999997776221 34
Q ss_pred HHHHHHHHHHHh
Q psy9602 207 EDLVDYLRDVGE 218 (239)
Q Consensus 207 e~iv~yf~~Vae 218 (239)
+++...+.....
T Consensus 77 ~di~~~~~~~~~ 88 (101)
T cd03409 77 YDIDSEIGLVRK 88 (101)
T ss_pred HHHHHHHHHHHH
Confidence 355555554444
No 172
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=85.09 E-value=10 Score=32.40 Aligned_cols=79 Identities=8% Similarity=0.106 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
...+++-+.+.+..++..+++..+..+.+...+..+...+.++|++++.|...... .+ ...+++.+.+ . ++|+++
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~-~~--~~~~~~~~~~-~-~ipvV~ 88 (273)
T cd01541 14 FPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALP-NP--NIDLYLKLEK-L-GIPYVF 88 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccc-cc--cHHHHHHHHH-C-CCCEEE
Confidence 34455555554444356777776777888888888889999999999987432111 11 1134555544 4 799999
Q ss_pred EeCC
Q psy9602 228 YHIP 231 (239)
Q Consensus 228 YN~P 231 (239)
.|..
T Consensus 89 ~~~~ 92 (273)
T cd01541 89 INAS 92 (273)
T ss_pred EecC
Confidence 9863
No 173
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=85.07 E-value=15 Score=33.84 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=68.9
Q ss_pred hHHhhhcCCC-CEEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCC-H-------HHHHHHHHHH
Q psy9602 120 GITLRMAPII-DQMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTC-F-------QEVVELAKHA 185 (239)
Q Consensus 120 ~v~~~~~gg~-glvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~S-t-------~eAIelar~A 185 (239)
+++..++.+. .+-++.+++|. ...|.+|-.+.+..+++.++.....|-+++...+ + +-+.++++.+
T Consensus 79 die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~~ 158 (279)
T cd07947 79 DLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLS 158 (279)
T ss_pred HHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHHH
Confidence 4555555554 45567777765 4678888888888888877653466666663222 2 2466677777
Q ss_pred HhCCCC-EEEECCCCCCC-CC----CHHHHHHHHHHHHhhC--CCCcEEEE
Q psy9602 186 ESLNVH-AVLCLPELFFT-PA----SVEDLVDYLRDVGEAA--PATPLFYY 228 (239)
Q Consensus 186 ~~aGAd-aVlV~PP~y~~-~~----s~e~iv~yf~~Vaeat--pdLPIiLY 228 (239)
.++|++ -+.+.....+. |. -++++.+.++.+.+.+ |+.||-++
T Consensus 159 ~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H 209 (279)
T cd07947 159 KESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWH 209 (279)
T ss_pred HHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEE
Confidence 779999 46555444322 10 2378999999998885 33345544
No 174
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=85.05 E-value=2.6 Score=38.64 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=44.9
Q ss_pred EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
..|.||+-..+. ++-.+.++.+.+.+ ++||++|.|=.+.+++-++. .|||+++|-.-.
T Consensus 172 ~~GvTG~~~~~~-~~l~~~i~~ik~~~---~~Pv~vGFGI~~~e~~~~~~-----~~aDGvIVGSa~ 229 (259)
T PF00290_consen 172 RMGVTGSRTELP-DELKEFIKRIKKHT---DLPVAVGFGISTPEQAKKLA-----AGADGVIVGSAF 229 (259)
T ss_dssp SSSSSSTTSSCH-HHHHHHHHHHHHTT---SS-EEEESSS-SHHHHHHHH-----TTSSEEEESHHH
T ss_pred cCCCCCCcccch-HHHHHHHHHHHhhc---CcceEEecCCCCHHHHHHHH-----ccCCEEEECHHH
Confidence 589999999886 67888899988876 47999999987777665443 799999998543
No 175
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=84.96 E-value=12 Score=36.15 Aligned_cols=78 Identities=8% Similarity=-0.046 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602 147 ERKLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL 225 (239)
Q Consensus 147 ER~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI 225 (239)
.-.+..+.+++..+...+.|+. +....+.+++.+.++.+.+.++|++++.-+.|.. ...+... +... +.||
T Consensus 20 ~~~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~---~~~~~~~----~~~~-~~Pv 91 (452)
T cd00578 20 QVEEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGP---AKMWIAG----LSEL-RKPV 91 (452)
T ss_pred HHHHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEccccccc---HHHHHHH----HHhc-CCCE
Confidence 3333344444443321345554 4333588899999999999999999998776532 2333333 3445 7999
Q ss_pred EEEeCCC
Q psy9602 226 FYYHIPM 232 (239)
Q Consensus 226 iLYN~P~ 232 (239)
++++.|.
T Consensus 92 ll~a~~~ 98 (452)
T cd00578 92 LLLATQF 98 (452)
T ss_pred EEEeCCC
Confidence 9999986
No 176
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=84.76 E-value=7.6 Score=33.73 Aligned_cols=98 Identities=18% Similarity=0.216 Sum_probs=58.7
Q ss_pred EEEeccccCC--cCCCHHHHHHHHHHHHHHh----------------------cCCCceEEEecC----CCCHHHHHHHH
Q psy9602 131 QMVNGTTGEG--VSMTTAERKLNLEAWMTEA----------------------KTHGFTVMVQIG----GTCFQEVVELA 182 (239)
Q Consensus 131 lvV~GstGE~--~sLT~eER~~li~~vve~~----------------------~G~rvpVIaGVg----~~St~eAIela 182 (239)
++.+-+..|+ +.++.++|.++++.+.+.. .+ +..||+..- ..+.++.+++.
T Consensus 58 I~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~-~~~iI~S~H~f~~tp~~~~l~~~~ 136 (224)
T PF01487_consen 58 IFTVRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELDLFPDDLKSRLAARKG-GTKIILSYHDFEKTPSWEELIELL 136 (224)
T ss_dssp EEE--BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHT-TSEEEEEEEESS---THHHHHHHH
T ss_pred EEEecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcccchhHHHHHHHHhhC-CCeEEEEeccCCCCCCHHHHHHHH
Confidence 3444444333 2456677777776666542 23 678888654 67778899999
Q ss_pred HHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 183 KHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 183 r~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+.+.+.|||.+=+..+.-... +--.+.++...+.+. ++.|++.|+.=
T Consensus 137 ~~~~~~gadivKia~~~~~~~-D~~~l~~~~~~~~~~-~~~p~i~~~MG 183 (224)
T PF01487_consen 137 EEMQELGADIVKIAVMANSPE-DVLRLLRFTKEFREE-PDIPVIAISMG 183 (224)
T ss_dssp HHHHHTT-SEEEEEEE-SSHH-HHHHHHHHHHHHHHH-TSSEEEEEEET
T ss_pred HHHHhcCCCeEEEEeccCCHH-HHHHHHHHHHHHhhc-cCCcEEEEEcC
Confidence 999999999886664332111 333455555555555 48999999863
No 177
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=84.75 E-value=1.8 Score=39.75 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=50.0
Q ss_pred cCCCceEEEecCCCC--------HHHHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 160 KTHGFTVMVQIGGTC--------FQEVVELAKHAESLNVHAVLCLP-ELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 160 ~G~rvpVIaGVg~~S--------t~eAIelar~A~~aGAdaVlV~P-P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
.+ +.+||+=+--.| -.+-.++++.+++.||+++.|+. |.||+. + ++|.+.+.+++ ++||..-||
T Consensus 43 ~~-~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~G-s----~e~L~~v~~~v-~~PvL~KDF 115 (254)
T COG0134 43 SG-KPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQG-S----FEDLRAVRAAV-DLPVLRKDF 115 (254)
T ss_pred CC-CceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccccCC-C----HHHHHHHHHhc-CCCeeeccC
Confidence 45 788998663222 22456699999999999999988 889887 4 55668898999 899998776
No 178
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=84.74 E-value=8.8 Score=35.85 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCCceEE-EecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhC
Q psy9602 150 LNLEAWMTEAKTHGFTVM-VQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAA 220 (239)
Q Consensus 150 ~li~~vve~~~G~rvpVI-aGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeat 220 (239)
++++.+++.. ++||| +..|+-.+.+-+ +.+.++||++++|..-.+-.. ++......|.......
T Consensus 184 elLk~l~~~~---~iPVV~iAeGGI~Tpena---~~v~e~GAdgVaVGSAI~~a~-dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 184 ELVKETAKLG---RLPVVNFAAGGVATPADA---ALMMQLGADGVFVGSGIFKSE-NPEKRARAIVEAVTHY 248 (283)
T ss_pred HHHHHHHHhc---CCCeEEEEeCCCCCHHHH---HHHHHcCCCEEEEcHHhhcCC-CHHHHHHHHHHHHHhc
Confidence 5677777754 58998 677777433333 333468999999998666555 7788888887776665
No 179
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=84.72 E-value=9.5 Score=36.39 Aligned_cols=81 Identities=19% Similarity=0.119 Sum_probs=61.1
Q ss_pred EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE-----ecCCCCHHHHHHHHHHH-HhCCCCEEEECCCCCCCCCCH
Q psy9602 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV-----QIGGTCFQEVVELAKHA-ESLNVHAVLCLPELFFTPASV 206 (239)
Q Consensus 133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa-----GVg~~St~eAIelar~A-~~aGAdaVlV~PP~y~~~~s~ 206 (239)
++|.-. ...+|.||-...++.++..+. .|+++ |....|.+++++.+... ++.||++|=+-- ..
T Consensus 69 ~lG~~~-T~~Vtld~mi~H~~aV~Rga~---~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEG-------g~ 137 (332)
T PLN02424 69 VHGHDT-TLPITLDEMLVHCRAVARGAN---RPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEG-------GS 137 (332)
T ss_pred hcCCCC-CCCcCHHHHHHHHHHHhccCC---CCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECC-------Cc
Confidence 334333 447999999999999988764 46655 44556899999999988 679999998762 22
Q ss_pred HHHHHHHHHHHhhCCCCcEE
Q psy9602 207 EDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 207 e~iv~yf~~VaeatpdLPIi 226 (239)
.+...-.+.+.++ ++|||
T Consensus 138 ~~~~~~I~~l~~~--GIPV~ 155 (332)
T PLN02424 138 PSRVTAAKAIVEA--GIAVM 155 (332)
T ss_pred HHHHHHHHHHHHc--CCCEE
Confidence 4577888888854 79998
No 180
>PRK00208 thiG thiazole synthase; Reviewed
Probab=84.44 E-value=11 Score=34.67 Aligned_cols=83 Identities=17% Similarity=0.146 Sum_probs=56.9
Q ss_pred cCCCCEE-Ee-ccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Q psy9602 126 APIIDQM-VN-GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP 203 (239)
Q Consensus 126 ~gg~glv-V~-GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~ 203 (239)
+-|+..+ ++ ...|-+..++..|. ++.+++.. ++|||++-+=.+.+++ ..|.++|||+|++..-..-..
T Consensus 142 ~~G~~~vmPlg~pIGsg~gi~~~~~---i~~i~e~~---~vpVIveaGI~tpeda----~~AmelGAdgVlV~SAItka~ 211 (250)
T PRK00208 142 EAGCAAVMPLGAPIGSGLGLLNPYN---LRIIIEQA---DVPVIVDAGIGTPSDA----AQAMELGADAVLLNTAIAVAG 211 (250)
T ss_pred HcCCCEeCCCCcCCCCCCCCCCHHH---HHHHHHhc---CCeEEEeCCCCCHHHH----HHHHHcCCCEEEEChHhhCCC
Confidence 3355544 32 34555567766544 66666653 5899998777666664 556779999999998665434
Q ss_pred CCHHHHHHHHHHHHhh
Q psy9602 204 ASVEDLVDYLRDVGEA 219 (239)
Q Consensus 204 ~s~e~iv~yf~~Vaea 219 (239)
++..+-..|..-.++
T Consensus 212 -dP~~ma~af~~Av~a 226 (250)
T PRK00208 212 -DPVAMARAFKLAVEA 226 (250)
T ss_pred -CHHHHHHHHHHHHHH
Confidence 788888888876654
No 181
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.44 E-value=15 Score=32.06 Aligned_cols=76 Identities=16% Similarity=0.043 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
..++++-+.+.+...+..+++..+..+.+.-++..+.+...++|++++.++. .+....+++.+.+ . ++|+++
T Consensus 15 ~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~------~~~~~~~~~~~~~-~-~iPvV~ 86 (280)
T cd06315 15 ILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVD------AAELQAELELAQK-A-GIPVVG 86 (280)
T ss_pred HHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCC------HHHHHHHHHHHHH-C-CCCEEE
Confidence 3445555544443324566666666788888899999999999999998632 1222345555554 4 799999
Q ss_pred EeCC
Q psy9602 228 YHIP 231 (239)
Q Consensus 228 YN~P 231 (239)
+|.+
T Consensus 87 ~d~~ 90 (280)
T cd06315 87 WHAG 90 (280)
T ss_pred ecCC
Confidence 9974
No 182
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=84.41 E-value=8.4 Score=34.46 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+..+++-+.+.+...+..+++.....+.+.-.++.+.....++|++++.|..+ ++ +. ++.+.+.. ++|+++
T Consensus 74 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~----~~-~~---~~~l~~~~-~iPvV~ 144 (341)
T PRK10703 74 FAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEY----PE-PL---LAMLEEYR-HIPMVV 144 (341)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC----CH-HH---HHHHHhcC-CCCEEE
Confidence 34444444443333245666666667777778888888888999999987532 22 23 23344424 799999
Q ss_pred EeCC
Q psy9602 228 YHIP 231 (239)
Q Consensus 228 YN~P 231 (239)
+|.+
T Consensus 145 ~d~~ 148 (341)
T PRK10703 145 MDWG 148 (341)
T ss_pred Eecc
Confidence 9864
No 183
>PLN02535 glycolate oxidase
Probab=84.36 E-value=8 Score=37.14 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=58.4
Q ss_pred CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--
Q psy9602 127 PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA-- 204 (239)
Q Consensus 127 gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~-- 204 (239)
|..+++|.|+.|-..-.+..- ..++..+.+.+++ ++|||+-=|=.+-.+++ .|..+||++|++--|+.+...
T Consensus 244 GvD~I~vsn~GGr~~d~~~~t-~~~L~ev~~av~~-~ipVi~dGGIr~g~Dv~----KALalGA~aV~vGr~~l~~l~~~ 317 (364)
T PLN02535 244 GVAGIIVSNHGARQLDYSPAT-ISVLEEVVQAVGG-RVPVLLDGGVRRGTDVF----KALALGAQAVLVGRPVIYGLAAK 317 (364)
T ss_pred CCCEEEEeCCCcCCCCCChHH-HHHHHHHHHHHhc-CCCEEeeCCCCCHHHHH----HHHHcCCCEEEECHHHHhhhhhc
Confidence 445677888877554334332 4556666666666 79999844444444443 467789999999999977642
Q ss_pred CHHHHHHHHHHHHhh
Q psy9602 205 SVEDLVDYLRDVGEA 219 (239)
Q Consensus 205 s~e~iv~yf~~Vaea 219 (239)
.++++.+.++.+.+.
T Consensus 318 g~~gv~~~l~~l~~e 332 (364)
T PLN02535 318 GEDGVRKVIEMLKDE 332 (364)
T ss_pred cHHHHHHHHHHHHHH
Confidence 678888888776554
No 184
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=84.28 E-value=24 Score=32.52 Aligned_cols=95 Identities=19% Similarity=0.095 Sum_probs=67.3
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC---------CCHHHHHHHHHHHHhCCCC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG---------TCFQEVVELAKHAESLNVH 191 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~---------~St~eAIelar~A~~aGAd 191 (239)
++...+.+++++++-|.. +.+|-+.+++.+.+... .+|+++.++. .+.+++++.+.. ..+++
T Consensus 146 ~~~l~~~gvD~i~~ET~~-----~~~E~~~~~~~~~~~~~--~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~--~~~~~ 216 (304)
T PRK09485 146 IEALAEAGADLLACETIP-----NLDEAEALVELLKEEFP--GVPAWLSFTLRDGTHISDGTPLAEAAALLAA--SPQVV 216 (304)
T ss_pred HHHHhhCCCCEEEEeccC-----CHHHHHHHHHHHHHhcC--CCcEEEEEEeCCCCcCCCCCCHHHHHHHHhc--CCCce
Confidence 455568888888876543 56788888888775543 4799987654 346677777642 22466
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
++.+- .. +++.+....+.+...+ ++|+++|-|-
T Consensus 217 ~iGiN-----C~-~p~~~~~~l~~~~~~~-~~pl~~~PNa 249 (304)
T PRK09485 217 AVGVN-----CT-APELVTAAIAALRAVT-DKPLVVYPNS 249 (304)
T ss_pred EEEec-----CC-CHHHHHHHHHHHHhcc-CCcEEEECCC
Confidence 76665 22 4588999999998877 7999999874
No 185
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=84.25 E-value=3 Score=35.98 Aligned_cols=61 Identities=28% Similarity=0.398 Sum_probs=45.7
Q ss_pred CceEEEecCCCCHH--------HHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 163 GFTVMVQIGGTCFQ--------EVVELAKHAESLNVHAVLCLP-ELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 163 rvpVIaGVg~~St~--------eAIelar~A~~aGAdaVlV~P-P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
+++||+-+-..|.. +.+++|+.+++.||+++-+.. +.++.. + .+..+.|.+.+ ++||++-+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g-~----~~~~~~i~~~v-~iPi~~~~ 79 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQG-S----LEDLRAVREAV-SLPVLRKD 79 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCC-C----HHHHHHHHHhc-CCCEEECC
Confidence 68999977665544 489999999999999998875 444433 3 35667777777 89999765
No 186
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=84.19 E-value=18 Score=31.74 Aligned_cols=77 Identities=10% Similarity=0.043 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+.+++..+.+.+...+..+++.....+.+...+..+...+.++|++++.|.. .+.+...++.+.+ . ++|+++
T Consensus 41 ~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~------~~~~~~~l~~~~~-~-~ipvV~ 112 (295)
T PRK10653 41 FVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD------SDAVGNAVKMANQ-A-NIPVIT 112 (295)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC------hHHHHHHHHHHHH-C-CCCEEE
Confidence 3445544444443334666665556677788888888888899999987532 2333344555544 4 799999
Q ss_pred EeCCC
Q psy9602 228 YHIPM 232 (239)
Q Consensus 228 YN~P~ 232 (239)
+|.+.
T Consensus 113 ~~~~~ 117 (295)
T PRK10653 113 LDRGA 117 (295)
T ss_pred EccCC
Confidence 99753
No 187
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=84.19 E-value=13 Score=30.85 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
..+.+-+.+.++.+++.+++.....+....++.++.+.+.++|++++.+... + ... ++.+.+ . ++|++.+
T Consensus 15 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~----~--~~~--~~~~~~-~-~ipvv~~ 84 (264)
T cd06267 15 AELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRL----D--DEL--LEELAA-L-GIPVVLV 84 (264)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCc----c--hHH--HHHHHH-c-CCCEEEe
Confidence 3444444444332245666666666666777777777777777777765331 1 111 334333 3 6777777
Q ss_pred eCC
Q psy9602 229 HIP 231 (239)
Q Consensus 229 N~P 231 (239)
+.+
T Consensus 85 ~~~ 87 (264)
T cd06267 85 DRP 87 (264)
T ss_pred ccc
Confidence 765
No 188
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=84.18 E-value=5.7 Score=36.61 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=63.4
Q ss_pred HhhhcCCCCE-EEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE---ecC------------CCCHHHHHHHHHHH
Q psy9602 122 TLRMAPIIDQ-MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV---QIG------------GTCFQEVVELAKHA 185 (239)
Q Consensus 122 ~~~~~gg~gl-vV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa---GVg------------~~St~eAIelar~A 185 (239)
...+++|... .+=++ .++.+|..++.+.+++.+...++||=+ .++ .++.+++ .+++
T Consensus 91 ~~Al~~G~tsVm~d~s-----~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea---~~f~ 162 (281)
T PRK06806 91 KEALEIGFTSVMFDGS-----HLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEA---KRFA 162 (281)
T ss_pred HHHHHcCCCEEEEcCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHH---HHHH
Confidence 3446666654 45555 478999999999999988764566532 222 2333333 2333
Q ss_pred HhCCCCEEEE--CCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 186 ESLNVHAVLC--LPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 186 ~~aGAdaVlV--~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
++.|+|.+-+ -|.|...+..+.-=++.+++|.+.+ ++|+++.=
T Consensus 163 ~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~-~iPlV~hG 207 (281)
T PRK06806 163 EETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV-HIPLVLHG 207 (281)
T ss_pred HhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc-CCCEEEEC
Confidence 4579999999 6555433312333456788999998 89998864
No 189
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=84.17 E-value=15 Score=32.68 Aligned_cols=61 Identities=7% Similarity=-0.034 Sum_probs=45.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
++-+++.-+..+.+..++..+.+.+.++|++++.|.. .+.+...++.+.+ . ++||+++|.+
T Consensus 31 g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~------~~~~~~~~~~~~~-~-giPvV~~~~~ 91 (303)
T cd01539 31 KVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVD------PTAAQTVINKAKQ-K-NIPVIFFNRE 91 (303)
T ss_pred CeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCc------hhhHHHHHHHHHH-C-CCCEEEeCCC
Confidence 5677776666778888888999999999999998632 2334456666544 5 7999999864
No 190
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=84.17 E-value=4.5 Score=36.73 Aligned_cols=92 Identities=26% Similarity=0.226 Sum_probs=56.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcC-CCceEEEecCCCC---HHHHHHHHHHHHhCCCCEEEEC--CCCCC-CC-C-CHHHHHH
Q psy9602 141 VSMTTAERKLNLEAWMTEAKT-HGFTVMVQIGGTC---FQEVVELAKHAESLNVHAVLCL--PELFF-TP-A-SVEDLVD 211 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G-~rvpVIaGVg~~S---t~eAIelar~A~~aGAdaVlV~--PP~y~-~~-~-s~e~iv~ 211 (239)
.+...+...+-++...+.... ..+|||+++...+ .++-+++++..+ .|||++-+- -|+.- .. . ..+++..
T Consensus 73 ~n~g~~~~~~~~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~ 151 (295)
T PF01180_consen 73 PNPGLEYYLERLRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVA 151 (295)
T ss_dssp -BSHHHHHHHHHHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHH
Confidence 344445555545444444321 1589999999999 999999999888 899999772 34331 11 1 3444444
Q ss_pred -HHHHHHhhCCCCcEEEEeCCCCc
Q psy9602 212 -YLRDVGEAAPATPLFYYHIPMFT 234 (239)
Q Consensus 212 -yf~~VaeatpdLPIiLYN~P~~T 234 (239)
..+.+.+.. ++||++-=-|..+
T Consensus 152 ~i~~~v~~~~-~~Pv~vKL~p~~~ 174 (295)
T PF01180_consen 152 EIVRAVREAV-DIPVFVKLSPNFT 174 (295)
T ss_dssp HHHHHHHHHH-SSEEEEEE-STSS
T ss_pred HHHHHHHhcc-CCCEEEEecCCCC
Confidence 445555555 8999997666443
No 191
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=84.03 E-value=7.9 Score=35.64 Aligned_cols=69 Identities=17% Similarity=0.070 Sum_probs=53.7
Q ss_pred hcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEEC--CCC------CCCC--C-CHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 159 AKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCL--PEL------FFTP--A-SVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 159 ~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~--PP~------y~~~--~-s~e~iv~yf~~VaeatpdLPIiL 227 (239)
... ..|+++++.+++.++..+.++.++++|+|+|=+- -|. |... . +.+-+.+-.++|.+++ ++||.+
T Consensus 59 ~~~-~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~v 136 (319)
T TIGR00737 59 AED-ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTV 136 (319)
T ss_pred CCc-cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEE
Confidence 344 6799999999999999999999999999999663 233 1111 1 4677788888888888 799988
Q ss_pred Ee
Q psy9602 228 YH 229 (239)
Q Consensus 228 YN 229 (239)
.-
T Consensus 137 Ki 138 (319)
T TIGR00737 137 KI 138 (319)
T ss_pred EE
Confidence 64
No 192
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=83.94 E-value=19 Score=30.37 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT 223 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL 223 (239)
+..=..++++.+.+.+...+.-++......+.+...+..+.+...++|++++.++. .+...+.+..+.+ . ++
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~------~~~~~~~l~~l~~-~-~i 81 (268)
T cd06323 10 NNPFFVTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTD------SDAVVPAVKAANE-A-GI 81 (268)
T ss_pred cCHHHHHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC------hHHHHHHHHHHHH-C-CC
Confidence 34444555555555444334666666666788888888888888899999987532 1223345555544 4 79
Q ss_pred cEEEEeCC
Q psy9602 224 PLFYYHIP 231 (239)
Q Consensus 224 PIiLYN~P 231 (239)
|+++.+.+
T Consensus 82 pvv~~~~~ 89 (268)
T cd06323 82 PVFTIDRE 89 (268)
T ss_pred cEEEEccC
Confidence 99988775
No 193
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=83.91 E-value=13 Score=31.54 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=40.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+..+++..+..+.+...+..+.....++|++++.++.. ....+.++.+.+ . ++|+++.|.+
T Consensus 29 g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~------~~~~~~i~~~~~-~-~ipvV~~~~~ 89 (273)
T cd06305 29 GGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRA------EVLKPWVKRALD-A-GIPVVAFDVD 89 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh------hhhHHHHHHHHH-c-CCCEEEecCC
Confidence 45556555666777778888887788999999976421 222333455544 3 6899999864
No 194
>PLN02428 lipoic acid synthase
Probab=83.88 E-value=10 Score=36.24 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=58.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcCC--CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC---CC--C--CCCCCHHHHHH
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTH--GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP---EL--F--FTPASVEDLVD 211 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~--rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P---P~--y--~~~~s~e~iv~ 211 (239)
...+.+++.++++.+.+...|. +.-+|+|. +++.++.++.++...++|+|.+.+.. |. . ...+=..+-++
T Consensus 226 ~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~ 304 (349)
T PLN02428 226 PRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFE 304 (349)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHH
Confidence 4578999999999998874442 45689999 68999999999999999999998743 21 0 00011235567
Q ss_pred HHHHHHhhC
Q psy9602 212 YLRDVGEAA 220 (239)
Q Consensus 212 yf~~Vaeat 220 (239)
.|+.++...
T Consensus 305 ~~~~~~~~~ 313 (349)
T PLN02428 305 FWREYGEEM 313 (349)
T ss_pred HHHHHHHHc
Confidence 888888876
No 195
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=83.83 E-value=18 Score=31.30 Aligned_cols=76 Identities=13% Similarity=-0.008 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+..+++.+.+.+...+..++...+..+.....+..+.+...++|++++.|.. .+.....++.+.++ ++|+++
T Consensus 14 ~~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~------~~~~~~~i~~~~~~--~iPvV~ 85 (272)
T cd06313 14 CAQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLG------IGTLTEAVQKAIAR--GIPVID 85 (272)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC------hHHhHHHHHHHHHC--CCcEEE
Confidence 3344444444333225677777666688888899999999999999997532 12233445555554 799999
Q ss_pred EeCC
Q psy9602 228 YHIP 231 (239)
Q Consensus 228 YN~P 231 (239)
+|.+
T Consensus 86 ~~~~ 89 (272)
T cd06313 86 MGTL 89 (272)
T ss_pred eCCC
Confidence 9974
No 196
>PRK12928 lipoyl synthase; Provisional
Probab=83.82 E-value=10 Score=35.01 Aligned_cols=77 Identities=12% Similarity=0.051 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHHhcC--CCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC---CCC-CCC---CCHHHHHHHH
Q psy9602 143 MTTAERKLNLEAWMTEAKT--HGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP---ELF-FTP---ASVEDLVDYL 213 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G--~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P---P~y-~~~---~s~e~iv~yf 213 (239)
.|.+++.++++.+.+...+ .+.-+|+|. +++-++.++.++.+.++|+|.+-+.+ |.- ..| +-..+-++.|
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL 263 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence 6889999999999987522 156799999 88999999999999999999999864 221 001 0124556778
Q ss_pred HHHHhhC
Q psy9602 214 RDVGEAA 220 (239)
Q Consensus 214 ~~Vaeat 220 (239)
+.++...
T Consensus 264 ~~~~~~~ 270 (290)
T PRK12928 264 GQIAREL 270 (290)
T ss_pred HHHHHHc
Confidence 8888876
No 197
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=83.81 E-value=14 Score=36.96 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=69.6
Q ss_pred EEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCce-EEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602 131 QMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFT-VMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFF 201 (239)
Q Consensus 131 lvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvp-VIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~ 201 (239)
+.+..++++.+ ..|.+|-.+.+..+++.++..... |.+|. +-.+.+..+++++.|.++|||.+.+......
T Consensus 185 V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~ 264 (503)
T PLN03228 185 ILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGI 264 (503)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 45666777665 568888888888888777652233 45554 3355777899999999999999888776543
Q ss_pred CCCCHHHHHHHHHHHHhhCC---CCcEEEE
Q psy9602 202 TPASVEDLVDYLRDVGEAAP---ATPLFYY 228 (239)
Q Consensus 202 ~~~s~e~iv~yf~~Vaeatp---dLPIiLY 228 (239)
. ++.++.++++.+.+..| ++||-++
T Consensus 265 ~--tP~~v~~lV~~l~~~~~~~~~i~I~~H 292 (503)
T PLN03228 265 N--MPHEFGELVTYVKANTPGIDDIVFSVH 292 (503)
T ss_pred C--CHHHHHHHHHHHHHHhccccCceeEec
Confidence 3 78999999999988775 3555543
No 198
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=83.70 E-value=9.5 Score=35.88 Aligned_cols=82 Identities=17% Similarity=0.106 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHHhcCCC--ceEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC---CHHHHHH
Q psy9602 144 TTAERKLNLEAWMTEAKTHG--FTVMVQIG-------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPA---SVEDLVD 211 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~r--vpVIaGVg-------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~---s~e~iv~ 211 (239)
|.+-|.+++..+++.+.. . .||.+=++ +.+.++++++++..++.|+|.+-|....+..+. ...-...
T Consensus 187 slenR~Rf~~eii~~ir~-~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~ 265 (337)
T PRK13523 187 SPENRYRFLREIIDAVKE-VWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVP 265 (337)
T ss_pred CHHHHHHHHHHHHHHHHH-hcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHH
Confidence 467788877777776655 3 36655444 357899999999999999999999765432210 0111234
Q ss_pred HHHHHHhhCCCCcEEE
Q psy9602 212 YLRDVGEAAPATPLFY 227 (239)
Q Consensus 212 yf~~VaeatpdLPIiL 227 (239)
+-+.|.+.+ ++||+.
T Consensus 266 ~~~~ik~~~-~ipVi~ 280 (337)
T PRK13523 266 FAEHIREHA-NIATGA 280 (337)
T ss_pred HHHHHHhhc-CCcEEE
Confidence 556677777 789764
No 199
>PLN02489 homocysteine S-methyltransferase
Probab=83.67 E-value=28 Score=32.81 Aligned_cols=96 Identities=13% Similarity=0.092 Sum_probs=66.2
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC---------CCHHHHHHHHHHHHhCCCC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG---------TCFQEVVELAKHAESLNVH 191 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~---------~St~eAIelar~A~~aGAd 191 (239)
++..++.+++++++-|. -+.+|-+.+++.+.+. .. ++|+++.++. .+..++++.+.. ..+++
T Consensus 173 i~~l~~~gvD~i~~ET~-----~~l~E~~a~~~~~~~~-~~-~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~--~~~~~ 243 (335)
T PLN02489 173 LQVLAEAGPDLIAFETI-----PNKLEAQAYVELLEEE-NI-KIPAWISFNSKDGVNVVSGDSLLECASIADS--CKKVV 243 (335)
T ss_pred HHHHHhCCCCEEEEecc-----CChHHHHHHHHHHHHc-CC-CCeEEEEEEeCCCCccCCCCcHHHHHHHHHh--cCCce
Confidence 44456788888888664 3557777777777654 32 5899887743 345667666642 23566
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 192 aVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
++.+- .- +++.+..-++.+...+ +.|+++|-|..
T Consensus 244 ~iGiN-----C~-~p~~~~~~l~~l~~~~-~~pl~vyPNaG 277 (335)
T PLN02489 244 AVGIN-----CT-PPRFIHGLILSIRKVT-SKPIVVYPNSG 277 (335)
T ss_pred EEEec-----CC-CHHHHHHHHHHHHhhc-CCcEEEECCCC
Confidence 66665 22 4588889999998888 79999999953
No 200
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=83.67 E-value=14 Score=31.66 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCC-CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 148 RKLNLEAWMTEAKTH-GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 148 R~~li~~vve~~~G~-rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
..++++.+.+.+... +.-+++.....+.+...+..+.+...++|++++.|+.. +.....++.+.+ . ++|++
T Consensus 14 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~------~~~~~~~~~~~~-~-~ipvV 85 (270)
T cd06308 14 RAAMNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEA------APLTPVVEEAYR-A-GIPVI 85 (270)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCch------hhchHHHHHHHH-C-CCCEE
Confidence 344444444433321 35666655566777778888888899999999986432 112233444444 4 79999
Q ss_pred EEeCC
Q psy9602 227 YYHIP 231 (239)
Q Consensus 227 LYN~P 231 (239)
++|.+
T Consensus 86 ~~~~~ 90 (270)
T cd06308 86 LLDRK 90 (270)
T ss_pred EeCCC
Confidence 99864
No 201
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=83.53 E-value=10 Score=37.46 Aligned_cols=59 Identities=10% Similarity=-0.131 Sum_probs=43.9
Q ss_pred cCCcCCCHHHHHHHHHHHHH----HhcCCCceEEEecCCCCHHHHHHHHHHHHhCCC-----CEEEECC
Q psy9602 138 GEGVSMTTAERKLNLEAWMT----EAKTHGFTVMVQIGGTCFQEVVELAKHAESLNV-----HAVLCLP 197 (239)
Q Consensus 138 GE~~sLT~eER~~li~~vve----~~~G~rvpVIaGVg~~St~eAIelar~A~~aGA-----daVlV~P 197 (239)
..-.+...+||...+..+++ .++. ++-..+++++.++++.++.++.|++.|+ .++|+-+
T Consensus 196 ~dq~~~p~~eRv~~~~~a~~~a~~eTG~-~~~ya~NiTa~~~~em~~ra~~a~~~gg~~~G~~~vMv~~ 263 (439)
T cd08211 196 ANQPFCPLKKVIPLVADAMRRAQDETGE-AKLFSANITADDPDEMIARGEYILEAFGPNAGHVAFLVDG 263 (439)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhhCC-cceEEecCCCCCHHHHHHHHHHHHHhcCcccCceEEEECc
Confidence 34456677999855554444 4544 4555679998899999999999999877 8888885
No 202
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=83.48 E-value=8.6 Score=32.80 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=39.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+..+++..+..+.+..++..+.+...++|++++.++. . ++. .++.+.+ . +.|++++|.+
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~---~-~~~----~~~~~~~-~-~ipvV~~~~~ 87 (268)
T cd06270 29 GKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKA---L-SDD----ELIELAA-Q-VPPLVLINRH 87 (268)
T ss_pred CCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCC---C-CHH----HHHHHhh-C-CCCEEEEecc
Confidence 3556665556667777788888888889999998643 1 221 1455544 3 6899888864
No 203
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=83.43 E-value=8.5 Score=33.31 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCC------CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGT------CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPA 222 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~------St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatpd 222 (239)
.+.++.+.+.+ .+|++.-.... -.....+.++.|.++|||.+++..|....+ +.+++.++++.+.+. ++
T Consensus 45 ~~~i~~i~~~~---~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-~~~~~~~~i~~~~~~-~~ 119 (221)
T PRK01130 45 VEDIKAIRAVV---DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-DGETLAELVKRIKEY-PG 119 (221)
T ss_pred HHHHHHHHHhC---CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCCCHHHHHHHHHhC-CC
Confidence 35666666654 46876221100 001123568999999999888876654333 224444555555443 37
Q ss_pred CcEEE
Q psy9602 223 TPLFY 227 (239)
Q Consensus 223 LPIiL 227 (239)
+|++.
T Consensus 120 i~vi~ 124 (221)
T PRK01130 120 QLLMA 124 (221)
T ss_pred CeEEE
Confidence 88775
No 204
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=83.43 E-value=6.2 Score=38.03 Aligned_cols=121 Identities=15% Similarity=0.187 Sum_probs=73.1
Q ss_pred CCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC-
Q psy9602 95 DLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG- 172 (239)
Q Consensus 95 ~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~- 172 (239)
.....++|-. ++-|-. +..+-|-|+- .+=+.--+.-|....-+++|+...++++..+..|..|++.
T Consensus 50 ~~~aaiDWd~-----TlafR~-------~Lw~~GLgVAEAMDTAQRGMGLDW~~a~ELIrRs~aeA~~~g~~ia~GaGTD 117 (382)
T PF06187_consen 50 GAPAAIDWDA-----TLAFRR-------HLWSLGLGVAEAMDTAQRGMGLDWAAARELIRRSAAEARAVGARIACGAGTD 117 (382)
T ss_dssp TT---B-HHH-----HHHHHH-------HHHHTT-EEEET-GGGTBTTTB-HHHHHHHHHHHHHHHHTSS--EEEEE--T
T ss_pred CCCccCCHHH-----HHHHHH-------HHHHccchHHHHhhhhhhcCCCChHHHHHHHHHHHHHHHhcCCcEEeecCcC
Confidence 4777888872 222222 2345666665 6678888889999999999999998887423467778873
Q ss_pred -------CCHHHHH----HHHHHHHhCCCCEEEECCCCCCC--CCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 173 -------TCFQEVV----ELAKHAESLNVHAVLCLPELFFT--PASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 173 -------~St~eAI----elar~A~~aGAdaVlV~PP~y~~--~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
.+.++++ |+....++.|+..||...=..-. . ++++..+-|..|.+.+ +-||||+=
T Consensus 118 ~L~~~~~~sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A~-~p~DY~~VY~~lL~q~-~~PVILHW 185 (382)
T PF06187_consen 118 QLDPAPAASLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVAR-SPDDYLRVYDRLLSQA-DEPVILHW 185 (382)
T ss_dssp TS---TT--HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH---SHHHHHHHHHHHHHH--SS-EEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhhC-CHHHHHHHHHHHHHHc-CCCEEEEe
Confidence 2444444 47778889998887766422211 2 8899999999999999 99999974
No 205
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=83.42 E-value=12 Score=31.65 Aligned_cols=73 Identities=7% Similarity=0.152 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.++++.+.+++...+..++...+..+.+..++..+.....++|++++.++. . + ..+ +..+.+ . ++|++++
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~---~-~-~~~---~~~~~~-~-~ipvv~~ 84 (259)
T cd01542 15 SRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATT---I-T-DEH---REAIKK-L-NVPVVVV 84 (259)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCC---C-C-HHH---HHHHhc-C-CCCEEEE
Confidence 445554444443324566666666677777888888888899999988643 1 2 222 233333 4 6899988
Q ss_pred eCC
Q psy9602 229 HIP 231 (239)
Q Consensus 229 N~P 231 (239)
+.+
T Consensus 85 ~~~ 87 (259)
T cd01542 85 GQD 87 (259)
T ss_pred ecc
Confidence 875
No 206
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=83.38 E-value=15 Score=37.30 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=64.2
Q ss_pred HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC--C---CCHHHHHHHHHHHHhCCCCEEE
Q psy9602 121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG--G---TCFQEVVELAKHAESLNVHAVL 194 (239)
Q Consensus 121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg--~---~St~eAIelar~A~~aGAdaVl 194 (239)
++...+.|.+++ ++-+..+. + -++..++.++.....+.+.++ . .+.+..+++++.+.++|||.+.
T Consensus 102 v~~A~~~Gvd~irif~~lnd~-----~----n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~ 172 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALNDV-----R----NMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSIC 172 (592)
T ss_pred HHHHHHCCCCEEEEEEecChH-----H----HHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 444566666654 66666664 1 222233333221334443332 1 2578999999999999999998
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 195 V~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
+-...... ++.++.+.++.|.+.. ++||-++-
T Consensus 173 i~Dt~G~~--~P~~~~~lv~~lk~~~-~~pi~~H~ 204 (592)
T PRK09282 173 IKDMAGLL--TPYAAYELVKALKEEV-DLPVQLHS 204 (592)
T ss_pred ECCcCCCc--CHHHHHHHHHHHHHhC-CCeEEEEE
Confidence 88765532 7899999999999998 68887653
No 207
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=83.37 E-value=13 Score=31.77 Aligned_cols=61 Identities=11% Similarity=0.227 Sum_probs=41.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
+.-+++..+..+.+...+..+...+.++|++++.+.. . +.+.+ ++.+.+ . ++|++++|.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~---~-~~~~~---~~~~~~-~-~ipvV~i~~~~ 89 (269)
T cd06281 29 GYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD---E-RDPEL---VDALAS-L-DLPIVLLDRDM 89 (269)
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC---C-CcHHH---HHHHHh-C-CCCEEEEeccc
Confidence 4566666677778778888888888899999998642 1 22333 333333 4 78999998753
No 208
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=83.34 E-value=16 Score=34.59 Aligned_cols=108 Identities=20% Similarity=0.145 Sum_probs=64.7
Q ss_pred HHHhhhhhcc-ccccccccCCC--CCccccceEEEeehhhHHH--HH----HHHhhHHhhhcCCCCEEEeccccCCcCCC
Q psy9602 74 RKRRRKRLRN-AHGEVVMIDPS--DLPKRAKWTIIITAGLLLL--TC----MLLVGITLRMAPIIDQMVNGTTGEGVSMT 144 (239)
Q Consensus 74 ~~~~~~~~~~-~~p~~~~iD~~--~l~~~~~W~iv~~A~~~~~--~~----~l~~~v~~~~~gg~glvV~GstGE~~sLT 144 (239)
.-=++.+|+. +.+++..+|-. -|-+..+.-+.+.|+++.. +. .++.. ..+.+. .+++++.+ +.|
T Consensus 34 ~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~Ara---A~~~gi-~~~lss~s---~~s 106 (344)
T cd02922 34 EAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHPDGELNLARA---AGKHGI-LQMISTNA---SCS 106 (344)
T ss_pred HHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCchHHHHHHHH---HHHcCC-CEEecCcc---cCC
Confidence 3345556665 66666666655 4566677777777777542 11 33222 111222 24454444 336
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecC-CCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602 145 TAERKLNLEAWMTEAKTHGFTVMVQIG-GTCFQEVVELAKHAESLNVHAVLCL 196 (239)
Q Consensus 145 ~eER~~li~~vve~~~G~rvpVIaGVg-~~St~eAIelar~A~~aGAdaVlV~ 196 (239)
.|| +++.... ..|.++++. ..+-....++.+.|+++|++++++.
T Consensus 107 ~e~-------v~~~~~~-~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvlt 151 (344)
T cd02922 107 LEE-------IVDARPP-DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLT 151 (344)
T ss_pred HHH-------HHHhcCC-CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 665 2233232 368888885 4466777889999999999999996
No 209
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=83.31 E-value=11 Score=31.86 Aligned_cols=73 Identities=14% Similarity=0.177 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.++++-+.+++...+..++.-....+...-.+..+.....++|++++.|+. . + . ..++.+.+. ++|+++.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~---~-~-~---~~~~~l~~~--~ipvV~~ 84 (265)
T cd06299 15 ASLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHE---Q-S-A---EQLEDLLKR--GIPVVFV 84 (265)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCC---C-C-h---HHHHHHHhC--CCCEEEE
Confidence 334444433333224555554444566666677778888888998888643 1 2 1 235666553 6888888
Q ss_pred eCC
Q psy9602 229 HIP 231 (239)
Q Consensus 229 N~P 231 (239)
|.+
T Consensus 85 ~~~ 87 (265)
T cd06299 85 DRE 87 (265)
T ss_pred ecc
Confidence 874
No 210
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=83.30 E-value=14 Score=31.74 Aligned_cols=60 Identities=8% Similarity=0.004 Sum_probs=44.0
Q ss_pred ceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 164 FTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 164 vpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+.+++.-+..+.++..+..+.....++|++++.|.. ...+...++.+.+ . ++||+++|.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~------~~~~~~~i~~~~~-~-gIpvV~~d~~ 94 (274)
T cd06311 35 VEFILVTASNDTEQQNAQQDLLINRKIDALVILPFE------SAPLTQPVAKAKK-A-GIFVVVVDRG 94 (274)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC------chhhHHHHHHHHH-C-CCeEEEEcCC
Confidence 567776666677778888888898999999998642 1334455666655 4 7999999875
No 211
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=83.17 E-value=13 Score=31.64 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=41.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
+.-+++..+..+.....+..+.....++|++++.|... . ... ++.+.+ . +.|++++|.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~--~---~~~---~~~~~~-~-~ipvV~~~~~~ 88 (264)
T cd06274 29 GYQLLIACSDDDPETERETVETLIARQVDALIVAGSLP--P---DDP---YYLCQK-A-GLPVVALDRPG 88 (264)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC--c---hHH---HHHHHh-c-CCCEEEecCcc
Confidence 35566655566677777888888889999999987531 1 222 445544 4 68999999864
No 212
>PF08254 Leader_Thr: Threonine leader peptide; InterPro: IPR011720 This family consists of examples of the threonine biosynthesis (thr) operon leader peptide, also called the thr operon attenuator. The small gene for this peptide is often missed in genome annotation. It should be looked for in genomes of the proteobacteria, immediately upstream of genes for threonine biosynthesis, typically aspartokinase I/homoserine dehydrogenase, homoserine kinase, and threonine synthase. Transcription of the rest of the Thr operon is attenuated (mostly turned off) unless the ribosome pauses during a stretch of the leader sequence rich in both Ile (made from Thr) and in Thr itself because of the scarcity of those amino acids at the time. The leader peptide itself, once made, may have no role other than to be degraded. Similar systems exist for some other amino acid biosynthetic operons, such as Trp.; GO: 0009088 threonine biosynthetic process, 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=83.15 E-value=1.3 Score=26.00 Aligned_cols=17 Identities=59% Similarity=0.769 Sum_probs=10.5
Q ss_pred CceeEEEEEEEeecCCCC
Q psy9602 1 METTITTVTTITTGGGSG 18 (239)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (239)
|-|||.|-+ +|||-|.|
T Consensus 6 l~ttiitt~-~ttgngag 22 (22)
T PF08254_consen 6 LITTIITTT-TTTGNGAG 22 (22)
T ss_pred eeeEEEEEE-EecccCCC
Confidence 346666544 48888765
No 213
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=83.01 E-value=7.9 Score=35.23 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=59.8
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEE--ec------CCCCHHHHHHHHHHHHhCCCCEEEECC------CCCCCCCCH
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMV--QI------GGTCFQEVVELAKHAESLNVHAVLCLP------ELFFTPASV 206 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIa--GV------g~~St~eAIelar~A~~aGAdaVlV~P------P~y~~~~s~ 206 (239)
..|+.++|.++++.+.+. ...|+. |. ...++.+-|++++...++||+.||+-. --.+.. ..
T Consensus 95 ~~i~~~~~~rlI~~~~~~----g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~-~g 169 (237)
T TIGR03849 95 MEISLEERCNLIERAKDN----GFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDE-KG 169 (237)
T ss_pred cCCCHHHHHHHHHHHHhC----CCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCC-CC
Confidence 459999999999999875 122222 22 135678999999999999999999987 222333 22
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 207 EDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 207 e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
+--.+-...|++.. ++.=++|..|.
T Consensus 170 ~~r~d~v~~i~~~l-~~eklifEAp~ 194 (237)
T TIGR03849 170 NVKEDELDVLAENV-DINKVIFEAPQ 194 (237)
T ss_pred CCchHHHHHHHhhC-ChhcEEEECCC
Confidence 33334455666677 57888888885
No 214
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=83.00 E-value=3.1 Score=37.99 Aligned_cols=66 Identities=24% Similarity=0.260 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEec------------------CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHH
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQI------------------GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVE 207 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaGV------------------g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e 207 (239)
+|..+.++.+++. ++||+..+ +....+++++.++..+++||+++.+--+ + .+
T Consensus 114 ~~~~~~I~al~~a----gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v----~--~~ 183 (254)
T cd06557 114 AEVAETIRALVDA----GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECV----P--AE 183 (254)
T ss_pred HHHHHHHHHHHHc----CCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----C--HH
Confidence 3666667766653 68877222 2223689999999999999999998743 2 12
Q ss_pred HHHHHHHHHHhhCCCCcEE
Q psy9602 208 DLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 208 ~iv~yf~~VaeatpdLPIi 226 (239)
-.+.|.+++ ++|+|
T Consensus 184 ----~~~~i~~~v-~iP~i 197 (254)
T cd06557 184 ----LAKEITEAL-SIPTI 197 (254)
T ss_pred ----HHHHHHHhC-CCCEE
Confidence 456777888 68876
No 215
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=82.98 E-value=11 Score=34.55 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCC-CCHHHHH----HHHHHHHhhCCCCcEEEEeCC
Q psy9602 175 FQEVVELAKHAESLNVHAVLCLPELFFTP-ASVEDLV----DYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 175 t~eAIelar~A~~aGAdaVlV~PP~y~~~-~s~e~iv----~yf~~VaeatpdLPIiLYN~P 231 (239)
++-.+++++...++|||++.+..|..... .+++... -|++.+.+.....+++++.+.
T Consensus 179 ~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~cG 240 (339)
T PRK06252 179 TDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHICG 240 (339)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEECC
Confidence 34457788888899999999998864321 2555554 556888888732266666553
No 216
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=82.72 E-value=10 Score=34.81 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=56.8
Q ss_pred CcCCCHHHHHHHHHHHHHHhcCCCceEEEecC----CCCHHHHHHHHHHHHh-CCCCEEEECCCCCCCCCCHHHHHHHHH
Q psy9602 140 GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG----GTCFQEVVELAKHAES-LNVHAVLCLPELFFTPASVEDLVDYLR 214 (239)
Q Consensus 140 ~~sLT~eER~~li~~vve~~~G~rvpVIaGVg----~~St~eAIelar~A~~-aGAdaVlV~PP~y~~~~s~e~iv~yf~ 214 (239)
...+|.+|-...++.++..++ .-+|++-.. ..|.+++++.+....+ +||++|-+- +.+++.+..+
T Consensus 55 t~~vtl~em~~h~~~V~r~~~--~p~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiE--------dg~~~~~~I~ 124 (264)
T PRK00311 55 TLPVTLDDMIYHTKAVARGAP--RALVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLE--------GGEEVAETIK 124 (264)
T ss_pred CCCcCHHHHHHHHHHHHhcCC--CCcEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEc--------CcHHHHHHHH
Confidence 347899999999999998764 235777443 3466888888665555 999999887 3367888888
Q ss_pred HHHhhCCCCcEE
Q psy9602 215 DVGEAAPATPLF 226 (239)
Q Consensus 215 ~VaeatpdLPIi 226 (239)
.+.++ ++||+
T Consensus 125 al~~a--gIpV~ 134 (264)
T PRK00311 125 RLVER--GIPVM 134 (264)
T ss_pred HHHHC--CCCEe
Confidence 88876 79997
No 217
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=82.71 E-value=4.2 Score=37.14 Aligned_cols=79 Identities=13% Similarity=0.236 Sum_probs=53.5
Q ss_pred EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC--CCCCC----H
Q psy9602 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF--FTPAS----V 206 (239)
Q Consensus 133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y--~~~~s----~ 206 (239)
..|.||+-..+. ++-.++++.+.+.+ +.||++|.|=.+.+++ +.+.+.|||++++-.-.. +...+ .
T Consensus 176 ~~GvTG~~~~~~-~~~~~~i~~ir~~t---~~Pi~vGFGI~~~e~~----~~~~~~GADGvVVGSalv~~i~~~~~~~~~ 247 (263)
T CHL00200 176 TTGVTGLKTELD-KKLKKLIETIKKMT---NKPIILGFGISTSEQI----KQIKGWNINGIVIGSACVQILLGSSPEKGL 247 (263)
T ss_pred CCCCCCCCcccc-HHHHHHHHHHHHhc---CCCEEEECCcCCHHHH----HHHHhcCCCEEEECHHHHHHHHhcChhhHH
Confidence 589999986664 55678888888755 5799999998776654 456778999999986431 11001 2
Q ss_pred HHHHHHHHHHHhh
Q psy9602 207 EDLVDYLRDVGEA 219 (239)
Q Consensus 207 e~iv~yf~~Vaea 219 (239)
+.+.+|.+.+.++
T Consensus 248 ~~~~~~~~~~~~~ 260 (263)
T CHL00200 248 DQLSEFCKVAKKS 260 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666443
No 218
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=82.67 E-value=13 Score=31.64 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=41.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+.-+++..+..+.....+..+.....++|++++.++.. +.+ .++.+.+ . ++|+++.|.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~----~~~----~~~~~~~-~-~iPvv~~~~~ 87 (265)
T cd06285 29 GYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDARS----DDH----FLDELTR-R-GVPFVLVLRH 87 (265)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC----ChH----HHHHHHH-c-CCCEEEEccC
Confidence 34556666667777888888888999999999986531 222 2555544 4 6899998875
No 219
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=82.61 E-value=11 Score=32.53 Aligned_cols=80 Identities=11% Similarity=-0.072 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
-.++++.+.+.. ++||+++-+-.+.+++.+.. +.|+|+|++........ ... .-..++......+. -..
T Consensus 144 ~~~~i~~i~~~~---~~Pvi~~GGI~~~~~v~~~l----~~GadgV~vgS~l~~~~-e~~-~~~~~~~~~~~~~~--~~~ 212 (236)
T cd04730 144 TFALVPEVRDAV---DIPVIAAGGIADGRGIAAAL----ALGADGVQMGTRFLATE-ESG-ASPAYKQALLAATA--EDT 212 (236)
T ss_pred HHHHHHHHHHHh---CCCEEEECCCCCHHHHHHHH----HcCCcEEEEchhhhcCc-ccC-CCHHHHHHHHcCCC--CCe
Confidence 356666666655 47998855544434444433 47999999998776544 222 22233333333312 122
Q ss_pred EeCCCCccccC
Q psy9602 228 YHIPMFTRVTL 238 (239)
Q Consensus 228 YN~P~~TG~~L 238 (239)
-.-|..||+.+
T Consensus 213 ~~~~~~~~~~~ 223 (236)
T cd04730 213 VLTRAFSGRPA 223 (236)
T ss_pred EEEeccCCCcc
Confidence 24556677654
No 220
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=82.56 E-value=9.1 Score=36.51 Aligned_cols=83 Identities=13% Similarity=0.184 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHhcC---CCceEEEecC-----------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHH-
Q psy9602 144 TTAERKLNLEAWMTEAKT---HGFTVMVQIG-----------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVED- 208 (239)
Q Consensus 144 T~eER~~li~~vve~~~G---~rvpVIaGVg-----------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~- 208 (239)
|.+-|.+++..+++.+.. .+.||.+=++ +.+.++++++++..++.|+|.+-+....++.+ ..+.
T Consensus 189 slenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~-~~~~~ 267 (361)
T cd04747 189 SLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEP-EFEGS 267 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCC-CcCcc
Confidence 556777666655554433 1467776333 35778999999999999999998865432222 1000
Q ss_pred HHHHHHHHHhhCCCCcEEEE
Q psy9602 209 LVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 209 iv~yf~~VaeatpdLPIiLY 228 (239)
-..+-..+-+.. ++||+.=
T Consensus 268 ~~~~~~~~k~~~-~~pv~~~ 286 (361)
T cd04747 268 ELNLAGWTKKLT-GLPTITV 286 (361)
T ss_pred chhHHHHHHHHc-CCCEEEE
Confidence 122224455666 7898873
No 221
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=82.56 E-value=9.7 Score=36.42 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=41.6
Q ss_pred cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q psy9602 138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLC 195 (239)
Q Consensus 138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV 195 (239)
|....-..+.-.++++.+.+.+ ++||++=++. +..+..++++.++++|+|++.+
T Consensus 146 g~~~~~~~~~~~~i~~~v~~~~---~~Pv~vKl~p-~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 146 GSAVGQVPELVEMYTRWVKRGS---RLPVIVKLTP-NITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred cccccCCHHHHHHHHHHHHhcc---CCcEEEEcCC-CcccHHHHHHHHHHCCCCEEEE
Confidence 3444456677778888887764 5899998875 4455889999999999999995
No 222
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=82.47 E-value=18 Score=33.04 Aligned_cols=78 Identities=12% Similarity=0.196 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 147 ERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 147 ER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
=+..+++-+.+++...+.-+++..+..+.+...+..+.....++|++++.+. +.+....+++.+.++ ++|++
T Consensus 39 f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~------~~~~~~~~l~~~~~~--~iPvV 110 (330)
T PRK10355 39 RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY------NGQVLSNVIKEAKQE--GIKVL 110 (330)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC------ChhhHHHHHHHHHHC--CCeEE
Confidence 3445555554444433467777777778888888899999999999999852 223334556666554 69999
Q ss_pred EEeCCC
Q psy9602 227 YYHIPM 232 (239)
Q Consensus 227 LYN~P~ 232 (239)
++|.+.
T Consensus 111 ~id~~~ 116 (330)
T PRK10355 111 AYDRMI 116 (330)
T ss_pred EECCCC
Confidence 999753
No 223
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.41 E-value=22 Score=30.27 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT 223 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL 223 (239)
+..=+..+++.+.+.+...+..+++.-+..+.....+..+.+...++|++++.|.. . +.....++.+.+ . ++
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~---~---~~~~~~l~~~~~-~-~i 81 (277)
T cd06319 10 RIPFWQIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTN---S---SAAVTLLKLAAQ-A-KI 81 (277)
T ss_pred CchHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCc---h---hhhHHHHHHHHH-C-CC
Confidence 33445666666666655435666666566677777788888888899999987532 1 112233444443 4 79
Q ss_pred cEEEEeCC
Q psy9602 224 PLFYYHIP 231 (239)
Q Consensus 224 PIiLYN~P 231 (239)
|++++|.+
T Consensus 82 pvV~~~~~ 89 (277)
T cd06319 82 PVVIADIG 89 (277)
T ss_pred CEEEEecC
Confidence 99999875
No 224
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=82.36 E-value=5.4 Score=33.24 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=48.7
Q ss_pred cCCCHHHHHHHHHHHHHHhc-CCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 141 VSMTTAERKLNLEAWMTEAK-THGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~-G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
..++..||+++++.++.... + .+.++-.+...+.+++.++.+.+.+.|.+|+|+-.|.
T Consensus 100 ~~~p~~eR~~~L~~~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~g~EGlv~K~~d 158 (174)
T cd07896 100 AKGPFEERLERLKNLLEKIPNP-HIKIVPQIPVKSNEALDQYLDEVVAAGGEGLMLRRPD 158 (174)
T ss_pred CCCCHHHHHHHHHHHHHhCCCC-cEEEEeeeeeCCHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 67899999999999997652 3 4566666677889999999999999999999998655
No 225
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=82.30 E-value=6.2 Score=37.85 Aligned_cols=81 Identities=12% Similarity=0.048 Sum_probs=58.3
Q ss_pred cC-CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHh--CCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q psy9602 141 VS-MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES--LNVHAVLCLPELFFTPASVEDLVDYLRDVG 217 (239)
Q Consensus 141 ~s-LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~--aGAdaVlV~PP~y~~~~s~e~iv~yf~~Va 217 (239)
+. ++.|||.+.++.+.....+ ++-|-+|+...+. +.++...+ +|+|.+.+-.-+. ..+.+++..+.|-
T Consensus 76 Hk~~~~e~~~~fv~~~~~~~~~-~~~vavG~~~~d~----er~~~L~~~~~g~D~iviD~AhG----hs~~~i~~ik~ik 146 (346)
T PRK05096 76 HKHYSVEEWAAFVNNSSADVLK-HVMVSTGTSDADF----EKTKQILALSPALNFICIDVANG----YSEHFVQFVAKAR 146 (346)
T ss_pred ecCCCHHHHHHHHHhccccccc-eEEEEecCCHHHH----HHHHHHHhcCCCCCEEEEECCCC----cHHHHHHHHHHHH
Confidence 44 8999999999987765555 5555555555443 44444444 6999999987775 4467788888888
Q ss_pred hhCCCCcEEEEeC
Q psy9602 218 EAAPATPLFYYHI 230 (239)
Q Consensus 218 eatpdLPIiLYN~ 230 (239)
+..|+++||.=|.
T Consensus 147 ~~~P~~~vIaGNV 159 (346)
T PRK05096 147 EAWPDKTICAGNV 159 (346)
T ss_pred HhCCCCcEEEecc
Confidence 8889999987775
No 226
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=82.26 E-value=5.1 Score=36.22 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=43.6
Q ss_pred EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
+.|.||+-..+.. +-.+.++.+.+.. +.||++|.|=.+.+++ +.+.++|||++++-.-.
T Consensus 172 ~~G~TG~~~~~~~-~~~~~i~~lr~~~---~~pi~vgfGI~~~e~~----~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 172 RAGVTGARNRAAS-ALNELVKRLKAYS---AKPVLVGFGISKPEQV----KQAIDAGADGVIVGSAI 230 (256)
T ss_pred CCCCCCCcccCCh-hHHHHHHHHHhhc---CCCEEEeCCCCCHHHH----HHHHHcCCCEEEECHHH
Confidence 5789998766653 4677777777765 4699999887666554 45778899999998643
No 227
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=82.16 E-value=23 Score=32.61 Aligned_cols=96 Identities=13% Similarity=-0.024 Sum_probs=58.4
Q ss_pred ccCCcCCCHHHH----HHHHHHHHHHhcCCCceEEEecCCCCHH-HHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHH
Q psy9602 137 TGEGVSMTTAER----KLNLEAWMTEAKTHGFTVMVQIGGTCFQ-EVVELAKHAESLNVHAVLCLPELFFTPASVEDLVD 211 (239)
Q Consensus 137 tGE~~sLT~eER----~~li~~vve~~~G~rvpVIaGVg~~St~-eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~ 211 (239)
.++...+-.... .++++.+.+. .+ |.--.+.+--.+.+ .+.|+-+.+.+.|..++.+.|..-....++..+..
T Consensus 71 ~~~~~~~~d~~~~~~nd~~a~~~~~~-pd-rf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~p 148 (293)
T COG2159 71 MGEVAIIPDLRRALANDDLAALAAEY-PD-RFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYP 148 (293)
T ss_pred cccccchHHHhhhhhhHHHHHHHhhC-Cc-ceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHH
Confidence 444444444333 3555555553 33 44444444444434 44455556666899999999987543326666777
Q ss_pred HHHHHHhhCCCCcEEEEeCCCCccc
Q psy9602 212 YLRDVGEAAPATPLFYYHIPMFTRV 236 (239)
Q Consensus 212 yf~~VaeatpdLPIiLYN~P~~TG~ 236 (239)
.|+...+. ++||+++.=+...+.
T Consensus 149 i~~~a~~~--gvpv~ihtG~~~~~~ 171 (293)
T COG2159 149 IYEAAEEL--GVPVVIHTGAGPGGA 171 (293)
T ss_pred HHHHHHHc--CCCEEEEeCCCCCCc
Confidence 77777664 899999877655543
No 228
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=82.13 E-value=21 Score=35.42 Aligned_cols=96 Identities=14% Similarity=0.017 Sum_probs=71.1
Q ss_pred CEEEeccccCCc-----CCCHHHHHHHHHHHHHHhcCCCceEEEec---CCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602 130 DQMVNGTTGEGV-----SMTTAERKLNLEAWMTEAKTHGFTVMVQI---GGTCFQEVVELAKHAESLNVHAVLCLPELFF 201 (239)
Q Consensus 130 glvV~GstGE~~-----sLT~eER~~li~~vve~~~G~rvpVIaGV---g~~St~eAIelar~A~~aGAdaVlV~PP~y~ 201 (239)
.+-++..+++.+ ..|.+|-.+.+..+++.+......|.++. +..+.+.++++++.+.++||+.+.+..-..+
T Consensus 92 ~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~ 171 (494)
T TIGR00973 92 RIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGY 171 (494)
T ss_pred EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 355777777654 67888888877777777665334555544 3567889999999999999998887766543
Q ss_pred CCCCHHHHHHHHHHHHhhCCC---CcEEE
Q psy9602 202 TPASVEDLVDYLRDVGEAAPA---TPLFY 227 (239)
Q Consensus 202 ~~~s~e~iv~yf~~Vaeatpd---LPIiL 227 (239)
. +++++.+.++.+.+..|+ +||-+
T Consensus 172 ~--~P~~~~~~i~~l~~~~~~~~~v~l~~ 198 (494)
T TIGR00973 172 A--LPAEYGNLIKGLRENVPNIDKAILSV 198 (494)
T ss_pred C--CHHHHHHHHHHHHHhhccccCceEEE
Confidence 3 789999999999988763 44554
No 229
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=82.10 E-value=18 Score=32.52 Aligned_cols=65 Identities=23% Similarity=0.245 Sum_probs=42.7
Q ss_pred CceEEEecC----CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH---HHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIG----GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDL---VDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg----~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~i---v~yf~~VaeatpdLPIiLYN~P 231 (239)
+..||+.-- ..+.++..+..+.+++.|||.+=+.-..- +.++. +.....+.+..++.|++.|+.=
T Consensus 135 ~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~----~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG 206 (253)
T PRK02412 135 GVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQ----SEQDVLTLLNATREMKELYADQPLITMSMG 206 (253)
T ss_pred CCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCC----CHHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 578887552 34557888999999999999876663221 34444 4444444433237899999863
No 230
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=81.98 E-value=21 Score=35.50 Aligned_cols=100 Identities=8% Similarity=0.016 Sum_probs=62.9
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG---GTCFQEVVELAKHAESLNVHAVLCLP 197 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg---~~St~eAIelar~A~~aGAdaVlV~P 197 (239)
++...+.|.+++-... .|++.+-.+..-..+...+. .+-+.++.. ..+.+-.+++++.++++|||.+.+..
T Consensus 111 v~~a~~~Gidi~Rifd-----~lnd~~n~~~ai~~ak~~G~-~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkD 184 (468)
T PRK12581 111 ISLSAQNGIDVFRIFD-----ALNDPRNIQQALRAVKKTGK-EAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKD 184 (468)
T ss_pred HHHHHHCCCCEEEEcc-----cCCCHHHHHHHHHHHHHcCC-EEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECC
Confidence 4455677777763322 56644333332223333222 222222221 12566688999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 198 ELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 198 P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
..... +++++.+.+++|-+.. ++||-++-
T Consensus 185 taG~l--~P~~v~~Lv~alk~~~-~~pi~~H~ 213 (468)
T PRK12581 185 MAGIL--TPKAAKELVSGIKAMT-NLPLIVHT 213 (468)
T ss_pred CCCCc--CHHHHHHHHHHHHhcc-CCeEEEEe
Confidence 66533 7899999999998865 89987653
No 231
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=81.87 E-value=17 Score=31.31 Aligned_cols=60 Identities=8% Similarity=-0.098 Sum_probs=40.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+.-+++-.+. +.++.++..+.+...++|++++.++.. +.....++.+.+ . ++|++++|.+
T Consensus 29 g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~------~~~~~~~~~~~~-~-~iPvV~~~~~ 88 (289)
T cd01540 29 GFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDV------KLGPAIVAKAKA-Y-NMKVVAVDDR 88 (289)
T ss_pred CCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCch------hhhHHHHHHHHh-C-CCeEEEecCC
Confidence 3455554444 667777888888899999999987431 112334555555 4 7999999854
No 232
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=81.80 E-value=30 Score=29.02 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCCEEEECCCCCC--CCC-CHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 180 ELAKHAESLNVHAVLCLPELFF--TPA-SVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 180 elar~A~~aGAdaVlV~PP~y~--~~~-s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
+.+..|.+.|+|.+.+.|-+.. ++. ....-.+.++.+.+..+++||+.-
T Consensus 107 ~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~ 158 (196)
T TIGR00693 107 EELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAI 158 (196)
T ss_pred HHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 3345678899999998753321 110 011235778888776656888754
No 233
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=81.55 E-value=6 Score=34.51 Aligned_cols=92 Identities=16% Similarity=0.100 Sum_probs=53.9
Q ss_pred hcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC-----------CCHH-HHHHHHHHHHhCCCCE
Q psy9602 125 MAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG-----------TCFQ-EVVELAKHAESLNVHA 192 (239)
Q Consensus 125 ~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~-----------~St~-eAIelar~A~~aGAda 192 (239)
++.|+..+++|+...- ..++++.+++.... -.+++++.. .++. +.+++++.+.+.|++.
T Consensus 95 ~~~Ga~~v~iGs~~~~-------~~~~~~~i~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~ 165 (241)
T PRK13585 95 LDLGVDRVILGTAAVE-------NPEIVRELSEEFGS--ERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGS 165 (241)
T ss_pred HHcCCCEEEEChHHhh-------ChHHHHHHHHHhCC--CcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCE
Confidence 4566666777766532 12455666665532 234444432 1122 6788999999999999
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 193 VlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+++..-.--.. ...--.+.++.+++.+ ++||+.
T Consensus 166 i~~~~~~~~g~-~~g~~~~~i~~i~~~~-~iPvia 198 (241)
T PRK13585 166 ILFTNVDVEGL-LEGVNTEPVKELVDSV-DIPVIA 198 (241)
T ss_pred EEEEeecCCCC-cCCCCHHHHHHHHHhC-CCCEEE
Confidence 99865311000 0011234578888888 799875
No 234
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=81.54 E-value=5.6 Score=35.34 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=60.3
Q ss_pred cCCC-CEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Q psy9602 126 APII-DQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA 204 (239)
Q Consensus 126 ~gg~-glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~ 204 (239)
+.|. .+++.+.+-++..--. -.++++.+.+.+ ++|||++=+-.|.+++.++.+ ..+.|||++|+---.|....
T Consensus 157 ~~G~~~iiv~~~~~~g~~~G~--d~~~i~~i~~~~---~ipviasGGi~s~~D~~~l~~-~~~~GvdgV~igra~~~g~~ 230 (241)
T PRK14024 157 SAGCSRYVVTDVTKDGTLTGP--NLELLREVCART---DAPVVASGGVSSLDDLRALAE-LVPLGVEGAIVGKALYAGAF 230 (241)
T ss_pred hcCCCEEEEEeecCCCCccCC--CHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHhh-hccCCccEEEEeHHHHcCCC
Confidence 4444 5778888887765443 366777777765 589999888888888877643 23579999999988776665
Q ss_pred CHHHHHHHHH
Q psy9602 205 SVEDLVDYLR 214 (239)
Q Consensus 205 s~e~iv~yf~ 214 (239)
+.+++.++++
T Consensus 231 ~~~~~~~~~~ 240 (241)
T PRK14024 231 TLPEALAVVR 240 (241)
T ss_pred CHHHHHHHhc
Confidence 7777776643
No 235
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=81.40 E-value=9.1 Score=37.38 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=45.1
Q ss_pred CCcCCCHHHHHHHHHHHHHHh----cCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 139 EGVSMTTAERKLNLEAWMTEA----KTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 139 E~~sLT~eER~~li~~vve~~----~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
...+-..+||...+..+++.+ +. +.-..+++++ ++.+.++.++.|++.|++++|+.+-.+
T Consensus 180 dq~~~p~~~Rv~~~~~a~~~a~~eTG~-~~~y~~NiT~-~~~em~~ra~~a~~~G~~~~mv~~~~~ 243 (407)
T TIGR03332 180 ETGLAPFEKRITEGKEVLQEVYEQTGH-KTLYAVNLTG-RTFDLKDKAKRAAELGADVLLFNVFAY 243 (407)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCC-cceEeecCCC-CHHHHHHHHHHHHHhCCCEEEEecccc
Confidence 334566789988777766643 33 4556668886 467899999999999999999997443
No 236
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=81.32 E-value=16 Score=30.93 Aligned_cols=76 Identities=8% Similarity=0.037 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+..+++-+.+.+.....-+++..+..+.++..+..+.....++|++++.+... + ......+ .... ++|+++
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~----~-~~~~~~l---~~~~-~ipvV~ 84 (269)
T cd06275 14 FAEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEY----D-QPLLAML---ERYR-HIPMVV 84 (269)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCC----C-hHHHHHH---HhcC-CCCEEE
Confidence 34444444443332245666666677888888888888889999999987531 1 2222222 2334 799999
Q ss_pred EeCCC
Q psy9602 228 YHIPM 232 (239)
Q Consensus 228 YN~P~ 232 (239)
.|.+.
T Consensus 85 i~~~~ 89 (269)
T cd06275 85 MDWGP 89 (269)
T ss_pred Eeccc
Confidence 98853
No 237
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=81.32 E-value=18 Score=35.31 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=45.1
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
++|+.-....++.+.++...++|+|.+.+-.-+. +.+.+.+.++.|-+..|+++||.=|...
T Consensus 143 ~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g----~~~~~~~~v~~ik~~~p~~~vi~g~V~T 204 (404)
T PRK06843 143 RVGAAVSIDIDTIERVEELVKAHVDILVIDSAHG----HSTRIIELVKKIKTKYPNLDLIAGNIVT 204 (404)
T ss_pred EEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCC----CChhHHHHHHHHHhhCCCCcEEEEecCC
Confidence 3343333346689999999999999999755442 3366788888888888899998877643
No 238
>PRK14743 thrL thr operon leader peptide; Provisional
Probab=81.30 E-value=1.5 Score=26.62 Aligned_cols=17 Identities=71% Similarity=0.900 Sum_probs=11.5
Q ss_pred eeEEEEEEEeecCCCCCC
Q psy9602 3 TTITTVTTITTGGGSGRQ 20 (239)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (239)
|||.| +|||||-|.|..
T Consensus 8 ttiit-~t~ttgngag~~ 24 (26)
T PRK14743 8 TTIIT-TTITTGNGAGXX 24 (26)
T ss_pred EEEEE-EEEecCCccccc
Confidence 44433 578999988864
No 239
>PTZ00413 lipoate synthase; Provisional
Probab=81.25 E-value=17 Score=35.60 Aligned_cols=76 Identities=12% Similarity=0.035 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCc----eEEEecCCCCHHHHHHHHHHHHhCCCCEEEEC---CCC-CCCCC---CHHHHHH
Q psy9602 143 MTTAERKLNLEAWMTEAKTHGF----TVMVQIGGTCFQEVVELAKHAESLNVHAVLCL---PEL-FFTPA---SVEDLVD 211 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G~rv----pVIaGVg~~St~eAIelar~A~~aGAdaVlV~---PP~-y~~~~---s~e~iv~ 211 (239)
-+.+++.++++.+.+..++ ++ -+|+|. +++.+|.+++++.+.++|+|.+-+- .|. ...|. =..+-++
T Consensus 275 atYe~sLe~Lr~AKe~f~~-gi~tcSGiIVGL-GET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~ 352 (398)
T PTZ00413 275 ASYRQSLKVLEHVKEFTNG-AMLTKSSIMLGL-GETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFE 352 (398)
T ss_pred CCHHHHHHHHHHHHHHhcC-CceEeeeeEecC-CCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHH
Confidence 4899999999999876333 33 568894 5699999999999999999999982 122 11110 1134566
Q ss_pred HHHHHHhhC
Q psy9602 212 YLRDVGEAA 220 (239)
Q Consensus 212 yf~~Vaeat 220 (239)
.|+.++...
T Consensus 353 ~~~~~a~~~ 361 (398)
T PTZ00413 353 MWEEEAMKM 361 (398)
T ss_pred HHHHHHHHc
Confidence 777788776
No 240
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=81.20 E-value=18 Score=33.79 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCCCC--------CCCC-CHHHHH
Q psy9602 142 SMTTAERKLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPELF--------FTPA-SVEDLV 210 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP~y--------~~~~-s~e~iv 210 (239)
.||.+|....++.++..+ .+||++=+ |-.+..++.+.++...++|+.++.+---.+ -+.. +.++..
T Consensus 59 ~l~~~e~~~~~~~I~~~~---~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~ 135 (294)
T TIGR02319 59 FTSVSEQAINAKNIVLAV---DVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMT 135 (294)
T ss_pred CCCHHHHHHHHHHHHhcc---CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHH
Confidence 789999999999999887 58999944 333555588999999999999999965221 1112 778888
Q ss_pred HHHHHHHhhCCCCcEEE
Q psy9602 211 DYLRDVGEAAPATPLFY 227 (239)
Q Consensus 211 ~yf~~VaeatpdLPIiL 227 (239)
.-.++..++..+-+++|
T Consensus 136 ~kI~Aa~~A~~~~d~~I 152 (294)
T TIGR02319 136 GKIEAAVEAREDEDFTI 152 (294)
T ss_pred HHHHHHHHhccCCCeEE
Confidence 88888888753444554
No 241
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=81.16 E-value=11 Score=36.93 Aligned_cols=83 Identities=17% Similarity=0.025 Sum_probs=55.8
Q ss_pred HHHHhhHHhhhcCCCCEEEec-cccCCcCCCHHHHHHHHHHHHHH----hcCCCceEEEecCCCCHHHHHHHHHHHHhCC
Q psy9602 115 CMLLVGITLRMAPIIDQMVNG-TTGEGVSMTTAERKLNLEAWMTE----AKTHGFTVMVQIGGTCFQEVVELAKHAESLN 189 (239)
Q Consensus 115 ~~l~~~v~~~~~gg~glvV~G-stGE~~sLT~eER~~li~~vve~----~~G~rvpVIaGVg~~St~eAIelar~A~~aG 189 (239)
+.++.-+.....||.+++=-= ......+...+||...+..+++. ++. +.-..+++++. +++.++.++.|+++|
T Consensus 150 ~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~-~~~y~~NiT~~-~~em~~ra~~a~~~G 227 (407)
T PRK09549 150 DYLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGH-KTLYAVNLTGR-TFELKEKAKRAAEAG 227 (407)
T ss_pred HHHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCC-cceEEEecCCC-HHHHHHHHHHHHHcC
Confidence 344333333445555554211 23456777889998777666654 433 45566688865 689999999999999
Q ss_pred CCEEEECCCC
Q psy9602 190 VHAVLCLPEL 199 (239)
Q Consensus 190 AdaVlV~PP~ 199 (239)
+.++|+.+-.
T Consensus 228 ~~~~m~~~~~ 237 (407)
T PRK09549 228 ADALLFNVFA 237 (407)
T ss_pred CCeEEEeccc
Confidence 9999999733
No 242
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=81.11 E-value=19 Score=31.94 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.++++.+.+.+...+..+++..+..+.+...+..+.....++|++++.+... . . . .+++.+.+ . ++|+++.
T Consensus 77 ~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~-~-~---~~~~~l~~-~-~iPvV~v 147 (328)
T PRK11303 77 ARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLP--P-E-H---PFYQRLQN-D-GLPIIAL 147 (328)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC--C-C-h---HHHHHHHh-c-CCCEEEE
Confidence 3344444333332234555544455666666777777778899998875321 1 1 2 23455544 4 6899998
Q ss_pred eCC
Q psy9602 229 HIP 231 (239)
Q Consensus 229 N~P 231 (239)
|.+
T Consensus 148 ~~~ 150 (328)
T PRK11303 148 DRA 150 (328)
T ss_pred CCC
Confidence 875
No 243
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=81.10 E-value=8 Score=36.19 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCCceEE-EecCCC-CHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhh
Q psy9602 150 LNLEAWMTEAKTHGFTVM-VQIGGT-CFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 150 ~li~~vve~~~G~rvpVI-aGVg~~-St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaea 219 (239)
++++.+.+. . ++||+ +..|+- +.+++ ..+.++|||+|+|..-.+-.. +++.....|......
T Consensus 187 elLkei~~~--~-~iPVV~fAiGGI~TPedA----a~~melGAdGVaVGSaI~ks~-dP~~~akafv~ai~~ 250 (287)
T TIGR00343 187 ELLLEVLKL--G-KLPVVNFAAGGVATPADA----ALMMQLGADGVFVGSGIFKSS-NPEKLAKAIVEATTH 250 (287)
T ss_pred HHHHHHHHh--C-CCCEEEeccCCCCCHHHH----HHHHHcCCCEEEEhHHhhcCC-CHHHHHHHHHHHHHH
Confidence 556666654 2 68998 677777 44443 334458999999998666545 677777766665544
No 244
>PRK08185 hypothetical protein; Provisional
Probab=81.08 E-value=11 Score=35.04 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=60.5
Q ss_pred hhcCCC-CEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCCC---C----HHH----HHHHHHHHH-hC
Q psy9602 124 RMAPII-DQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGGT---C----FQE----VVELAKHAE-SL 188 (239)
Q Consensus 124 ~~~gg~-glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~~---S----t~e----AIelar~A~-~a 188 (239)
.++.|- .+++=|| .|+.+|-.++.+.+++.+...+++|=+ |.-+. + ..+ ..+.++... +.
T Consensus 87 ai~~Gf~SVM~D~S-----~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~T 161 (283)
T PRK08185 87 AIRCGFTSVMIDGS-----LLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRT 161 (283)
T ss_pred HHHcCCCEEEEeCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhh
Confidence 345443 4566665 589999999999999877654455533 22111 0 001 233344444 45
Q ss_pred CCCEEEE-----CCCCCC--CCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 189 NVHAVLC-----LPELFF--TPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 189 GAdaVlV-----~PP~y~--~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
|+|++-+ ...|.. +| .- -++.+++|.+.+ ++|++++=
T Consensus 162 gvD~LAvaiGt~HG~y~~~~kp-~L--~~e~l~~I~~~~-~iPLVlHG 205 (283)
T PRK08185 162 GVDTLAVAIGTAHGIYPKDKKP-EL--QMDLLKEINERV-DIPLVLHG 205 (283)
T ss_pred CCCEEEeccCcccCCcCCCCCC-Cc--CHHHHHHHHHhh-CCCEEEEC
Confidence 9999998 444433 33 22 278888999998 89999863
No 245
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=81.06 E-value=9.7 Score=33.76 Aligned_cols=64 Identities=19% Similarity=0.095 Sum_probs=49.1
Q ss_pred ceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCCCCC-CCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 164 FTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPELFF-TPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 164 vpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP~y~-~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+-.++|. |...++.-+..++.|.+.|||.+-+..++.. +....+.+.+-..+|.+++.++|+.+
T Consensus 56 v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKv 122 (211)
T TIGR00126 56 ICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKV 122 (211)
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEE
Confidence 3344454 5677888889999999999999999988753 22278889999999999875566544
No 246
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.98 E-value=6.4 Score=34.82 Aligned_cols=60 Identities=7% Similarity=0.005 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 150 LNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 150 ~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
+|++.+.+. ++|++-|+.+. ..+..|.+.|+|.+-+.|-..+ . .+|++.+..-.|++|++
T Consensus 100 ~v~~~~~~~----~i~~iPG~~T~------~E~~~A~~~Gad~vklFPa~~~------G-~~~ik~l~~~~p~ip~~ 159 (213)
T PRK06552 100 ETAKICNLY----QIPYLPGCMTV------TEIVTALEAGSEIVKLFPGSTL------G-PSFIKAIKGPLPQVNVM 159 (213)
T ss_pred HHHHHHHHc----CCCEECCcCCH------HHHHHHHHcCCCEEEECCcccC------C-HHHHHHHhhhCCCCEEE
Confidence 455555543 79999998753 3455667899999999662221 2 57788888888778877
No 247
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=80.93 E-value=11 Score=32.25 Aligned_cols=75 Identities=17% Similarity=0.071 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHH-hCCCCEEEECCCCCCCCCCHHHHH-HHHHHHHhhCCCCcEEE
Q psy9602 150 LNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAE-SLNVHAVLCLPELFFTPASVEDLV-DYLRDVGEAAPATPLFY 227 (239)
Q Consensus 150 ~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~-~aGAdaVlV~PP~y~~~~s~e~iv-~yf~~VaeatpdLPIiL 227 (239)
.+++.+.+. .+ +....+.+.....+++++..+.+. +.|+.+|.+.|........+.... ..|+.+.+. ++||++
T Consensus 60 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~~ 135 (273)
T PF04909_consen 60 WLVELAAKH-PD-RFIGFAAIPPPDPEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEEL--GLPVLI 135 (273)
T ss_dssp HHHHHHHHS-TT-TEEEEEEETTTSHHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHH--T-EEEE
T ss_pred HHHHHHHHc-CC-CEEEEEEecCCCchhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhh--ccceee
Confidence 345454443 33 555666677778889999888888 899999999986653332455555 778777775 899998
Q ss_pred E
Q psy9602 228 Y 228 (239)
Q Consensus 228 Y 228 (239)
+
T Consensus 136 H 136 (273)
T PF04909_consen 136 H 136 (273)
T ss_dssp E
T ss_pred e
Confidence 8
No 248
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=80.91 E-value=3.1 Score=35.12 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=40.7
Q ss_pred EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC--CCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF--FTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y--~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
.++|++..+.++ ++.|.+.|+|.+.+.|-+. .++....-=.+.|+.+.+.+ ++||+.
T Consensus 96 ~~ig~S~h~~~e----~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~-~~pv~A 154 (180)
T PF02581_consen 96 KIIGASCHSLEE----AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS-PIPVYA 154 (180)
T ss_dssp SEEEEEESSHHH----HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT-SSCEEE
T ss_pred eEEEeecCcHHH----HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC-CCCEEE
Confidence 468999999988 6667799999999998543 22211112356788888888 689875
No 249
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=80.89 E-value=19 Score=33.16 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHH----HHHHhhC----CCCcEEEE
Q psy9602 173 TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYL----RDVGEAA----PATPLFYY 228 (239)
Q Consensus 173 ~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf----~~Vaeat----pdLPIiLY 228 (239)
..++..+++++...++|||++++..|..-.. +++...+|+ +.|.++. ++.|++.+
T Consensus 177 ~~t~~~~~~~~~~~eaGad~i~i~d~~~~~l-sp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~ 239 (338)
T TIGR01464 177 KLTDATIEYLVEQVKAGAQAVQIFDSWAGAL-SPEDFEEFVLPYLKKIIEEVKARLPNVPVILF 239 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEECCccccC-CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 3456677888888889999999887743222 667666444 5666653 34566543
No 250
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=80.88 E-value=5 Score=38.45 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCC-C-------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhC
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGT-C-------FQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAA 220 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~-S-------t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeat 220 (239)
+-+++.......+ ++|+|+-+++. + ....+--++.|.++|||+|.++- |+....+.+.+.-+..|++++
T Consensus 112 ~G~l~~~~~~~~~-~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tv--y~Gs~~E~~ml~~l~~i~~ea 188 (348)
T PRK09250 112 LGVLEAVARKYAH-KIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATI--YFGSEESRRQIEEISEAFEEA 188 (348)
T ss_pred HHHHHhccccccC-CCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE--ecCCHHHHHHHHHHHHHHHHH
Confidence 4456654433444 79999977653 1 23344458899999999999985 332214556666666665553
Q ss_pred C--CCcEEEEeCCC
Q psy9602 221 P--ATPLFYYHIPM 232 (239)
Q Consensus 221 p--dLPIiLYN~P~ 232 (239)
- ++|+++.-||-
T Consensus 189 ~~~GlPlv~~~YpR 202 (348)
T PRK09250 189 HELGLATVLWSYLR 202 (348)
T ss_pred HHhCCCEEEEeccc
Confidence 1 79999988885
No 251
>PRK05481 lipoyl synthase; Provisional
Probab=80.78 E-value=16 Score=33.48 Aligned_cols=81 Identities=12% Similarity=0.024 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCC--CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC---CCC-CCCC---CHHHHHHH
Q psy9602 142 SMTTAERKLNLEAWMTEAKTH--GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP---ELF-FTPA---SVEDLVDY 212 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~--rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P---P~y-~~~~---s~e~iv~y 212 (239)
..|.+++.++++.+.+...|. ..-+|+|. +++.++..+..+...++|.|.+-+.+ |.+ ..+. -..+-.+.
T Consensus 176 ~~t~e~~le~i~~ar~~~pgi~~~t~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~ 254 (289)
T PRK05481 176 GADYERSLELLKRAKELHPGIPTKSGLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVERYVTPEEFDE 254 (289)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEeeeeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCCCcCCHHHHHH
Confidence 568999999999999885552 45689999 88999999999999999999999953 332 1011 23455667
Q ss_pred HHHHHhhCCCCc
Q psy9602 213 LRDVGEAAPATP 224 (239)
Q Consensus 213 f~~VaeatpdLP 224 (239)
+..++... +.+
T Consensus 255 l~~~~~~i-~~~ 265 (289)
T PRK05481 255 YKEIALEL-GFL 265 (289)
T ss_pred HHHHHHHc-Cch
Confidence 77777776 443
No 252
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=80.72 E-value=8.2 Score=36.61 Aligned_cols=81 Identities=6% Similarity=-0.035 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCc---eEEEec----------CCCCHHH-HHHHHHHHHhCCCCEEEECCCCCCCCCCHHHH
Q psy9602 144 TTAERKLNLEAWMTEAKTHGF---TVMVQI----------GGTCFQE-VVELAKHAESLNVHAVLCLPELFFTPASVEDL 209 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rv---pVIaGV----------g~~St~e-AIelar~A~~aGAdaVlV~PP~y~~~~s~e~i 209 (239)
|.|-|.+++..+++.+.. .+ .|.+=+ ++.+.++ ++++++..++.|+|.+-|.-|.+... ..-.
T Consensus 204 slENR~Rf~~Eiv~aVr~-~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~--~~~~ 280 (362)
T PRK10605 204 SVENRARLVLEVVDAGIA-EWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG--EPYS 280 (362)
T ss_pred cHHHHHHHHHHHHHHHHH-HcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC--cccc
Confidence 567777766666665443 21 233312 1356778 89999999999999999987644221 1112
Q ss_pred HHHHHHHHhhCCCCcEEEE
Q psy9602 210 VDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 210 v~yf~~VaeatpdLPIiLY 228 (239)
..+.+.|-+.+ +.||+.-
T Consensus 281 ~~~~~~ik~~~-~~pv~~~ 298 (362)
T PRK10605 281 DAFREKVRARF-HGVIIGA 298 (362)
T ss_pred HHHHHHHHHHC-CCCEEEe
Confidence 34457777778 7888764
No 253
>TIGR02077 thr_lead_pep thr operon leader peptide. This family consists of examples of the threonine biosynthesis (thr) operon leader peptide, also called the thr operon attenuator. The small gene for this peptide is often missed in genome annotation. It should be looked for in genomes of the proteobacteria, immediately upstream of genes for threonine biosynthesis, typically aspartokinase I/homoserine dehydrogenase, homoserine kinase, and threonine synthase. Transcription of the rest of the Thr operon is attenuated (mostly turned off) unless the ribosome pauses during a stretch of the leader sequence rich in both Ile (made from Thr) and in Thr itself because of the scarcity of those amino acids at the time. The leader peptide itself, once made, may have no role other than to be degraded. Similar systems exist for some other amino acid biosynthetic operons, such as Trp.
Probab=80.61 E-value=2 Score=26.26 Aligned_cols=18 Identities=67% Similarity=0.822 Sum_probs=14.5
Q ss_pred eeEEEEEEEeecCCCCCC
Q psy9602 3 TTITTVTTITTGGGSGRQ 20 (239)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (239)
+++++-|||+||-|.|..
T Consensus 7 ttt~~TtT~ttgngAG~~ 24 (26)
T TIGR02077 7 TTTTTTTTITTGNGAGXX 24 (26)
T ss_pred EEEEEEEEEEeccccccc
Confidence 567777899999998864
No 254
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=80.49 E-value=4.2 Score=37.13 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=45.4
Q ss_pred cCCCceEEEecCCCC--------HHHHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 160 KTHGFTVMVQIGGTC--------FQEVVELAKHAESLNVHAVLCLP-ELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 160 ~G~rvpVIaGVg~~S--------t~eAIelar~A~~aGAdaVlV~P-P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
.+ ++.||+-+--.| ..+..++++.+++.||+++.|+. |.||.. =.+++..+..++ ++|++-=|+
T Consensus 45 ~~-~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~G-----s~~dL~~v~~~~-~~PvL~KDF 117 (254)
T PF00218_consen 45 EG-RISVIAEIKRASPSKGDIREDFDPAEIAKAYEEAGAAAISVLTEPKFFGG-----SLEDLRAVRKAV-DLPVLRKDF 117 (254)
T ss_dssp TS-S-EEEEEE-SEETTTEESBSS-SHHHHHHHHHHTT-SEEEEE--SCCCHH-----HHHHHHHHHHHS-SS-EEEES-
T ss_pred CC-CCeEEEEeecCCCCCCccCccCCHHHHHHHHHhcCCCEEEEECCCCCCCC-----CHHHHHHHHHHh-CCCcccccC
Confidence 45 788998764333 25889999999999999999987 667754 667888888888 899987554
No 255
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=80.37 E-value=11 Score=34.35 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 176 QEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 176 ~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
+++-+.++.+.+.|.|++|+-=.- .- +.+.+.+-.+.|.+.+ ++||+|+-.
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~--gv-t~~~~~~~v~~ik~~~-~lPvilfP~ 78 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSD--GV-TEENVDNVVEAIKERT-DLPVILFPG 78 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcc--cc-cHHHHHHHHHHHHhhc-CCCEEEecC
Confidence 778899999999999999998422 22 6789999999999888 999999743
No 256
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=80.29 E-value=17 Score=32.23 Aligned_cols=73 Identities=8% Similarity=0.176 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 150 LNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 150 ~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
++++.+.+.+...+..+++.....+.+...+..+.....++|++++.|... . . + .+++.+.+ . ++|++++|
T Consensus 77 ~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~-~-~---~~~~~l~~-~-~iPvV~~~ 147 (327)
T TIGR02417 77 RIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMP--P-E-D---AYYQKLQN-E-GLPVVALD 147 (327)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC--C-C-h---HHHHHHHh-c-CCCEEEEc
Confidence 344444443332245666655555666666777777888999998876421 1 1 2 23455544 4 69999998
Q ss_pred CC
Q psy9602 230 IP 231 (239)
Q Consensus 230 ~P 231 (239)
.+
T Consensus 148 ~~ 149 (327)
T TIGR02417 148 RS 149 (327)
T ss_pred cc
Confidence 75
No 257
>PRK08227 autoinducer 2 aldolase; Validated
Probab=80.27 E-value=8.7 Score=35.34 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHh
Q psy9602 151 NLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGE 218 (239)
Q Consensus 151 li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vae 218 (239)
-++.+++.+ .+||++ |=...+.++.+++++.|.++||.++.+-=..|..+ ++..+.+-+..|.-
T Consensus 183 ~f~~vv~a~---~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~-~p~~~~~al~~IVh 247 (264)
T PRK08227 183 GFERITAGC---PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSE-HPVAMIKAVHAVVH 247 (264)
T ss_pred HHHHHHHcC---CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccC-CHHHHHHHHHHHHh
Confidence 344555533 678876 44444789999999999999999999998888877 88888877777653
No 258
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=80.19 E-value=25 Score=29.95 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=41.5
Q ss_pred eEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 165 TVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 165 pVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
-+++.-+..+.....+..+.+.+.++|++++.+.. .+.+...+..+.+ . ++|++++|.+
T Consensus 36 ~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~------~~~~~~~l~~~~~-~-~iPvv~~~~~ 94 (272)
T cd06300 36 EFIVTSADGDVAQQIADIRNLIAQGVDAIIINPAS------PTALNPVIEEACE-A-GIPVVSFDGT 94 (272)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCC------hhhhHHHHHHHHH-C-CCeEEEEecC
Confidence 45666666777888888888888899999998632 1223344555554 4 6899998865
No 259
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=80.14 E-value=17 Score=30.69 Aligned_cols=74 Identities=8% Similarity=0.040 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
...+++.+.+.+...+.-+++-.+..+.+...+..+...+.++|++++.++. . + +.+.. .+. .. ++|+++
T Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~---~-~-~~~~~---~l~-~~-~ipvV~ 83 (268)
T cd06298 14 FAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGK---I-S-EEHRE---EFK-RS-PTPVVL 83 (268)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCC---C-c-HHHHH---HHh-cC-CCCEEE
Confidence 3344444433332223445544556667777777777778899999987532 1 2 23333 333 34 789999
Q ss_pred EeCC
Q psy9602 228 YHIP 231 (239)
Q Consensus 228 YN~P 231 (239)
+|..
T Consensus 84 ~~~~ 87 (268)
T cd06298 84 AGSV 87 (268)
T ss_pred Eccc
Confidence 8864
No 260
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=80.13 E-value=11 Score=32.63 Aligned_cols=72 Identities=11% Similarity=0.049 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC--CCHHHHHHHHHHHHhhCCCC
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP--ASVEDLVDYLRDVGEAAPAT 223 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~--~s~e~iv~yf~~VaeatpdL 223 (239)
++..++++.+.+. . .+++++++. +.+ .++.+++.|+|.+.+..-.+... .......++.+.+.+.+ ++
T Consensus 105 ~~~~~~i~~~~~~--~-~i~vi~~v~--t~e----e~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~-~i 174 (221)
T PRK01130 105 ETLAELVKRIKEY--P-GQLLMADCS--TLE----EGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV-GC 174 (221)
T ss_pred CCHHHHHHHHHhC--C-CCeEEEeCC--CHH----HHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC-CC
Confidence 4556777777765 3 689888765 334 35678999999987642111000 01122367888888888 78
Q ss_pred cEEE
Q psy9602 224 PLFY 227 (239)
Q Consensus 224 PIiL 227 (239)
||+.
T Consensus 175 Pvia 178 (221)
T PRK01130 175 PVIA 178 (221)
T ss_pred CEEE
Confidence 9875
No 261
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.08 E-value=22 Score=30.14 Aligned_cols=59 Identities=8% Similarity=0.139 Sum_probs=38.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+.-+++.....+.+.-.+..+.....++|++++.++.. +. ..++.+.+ . ++|++++|.+
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~----~~----~~~~~~~~-~-~ipvV~i~~~ 87 (270)
T cd06296 29 GYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPEL----TS----AQRAALRR-T-GIPFVVVDPA 87 (270)
T ss_pred CCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCC----Ch----HHHHHHhc-C-CCCEEEEecc
Confidence 34555555555566666777777778899998887541 21 12555544 3 7899998865
No 262
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=79.99 E-value=31 Score=28.10 Aligned_cols=103 Identities=15% Similarity=0.008 Sum_probs=64.5
Q ss_pred HHhhhcCCC-CEEEeccccCCcCCC--HHHHHHHHHHHHHHhcCCCceEEEecC--CC-CHHHHHHHHHHHHhCCCCEEE
Q psy9602 121 ITLRMAPII-DQMVNGTTGEGVSMT--TAERKLNLEAWMTEAKTHGFTVMVQIG--GT-CFQEVVELAKHAESLNVHAVL 194 (239)
Q Consensus 121 v~~~~~gg~-glvV~GstGE~~sLT--~eER~~li~~vve~~~G~rvpVIaGVg--~~-St~eAIelar~A~~aGAdaVl 194 (239)
++...+.|. ++.+....+ +.++ .++-.+.++.+++.++. ++|+++-.. .. +.++..++++.+++.|++++=
T Consensus 71 a~~a~~~Gad~i~v~~~~~--~~~~~~~~~~~~~~~~i~~~~~~-~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK 147 (201)
T cd00945 71 VEEAIDLGADEIDVVINIG--SLKEGDWEEVLEEIAAVVEAADG-GLPLKVILETRGLKTADEIAKAARIAAEAGADFIK 147 (201)
T ss_pred HHHHHHcCCCEEEEeccHH--HHhCCCHHHHHHHHHHHHHHhcC-CceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 344455555 454443332 3334 78888888888887633 689988553 22 567788888888999999998
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHhhCC-CCcEEEEeC
Q psy9602 195 CLPELFFTPASVEDLVDYLRDVGEAAP-ATPLFYYHI 230 (239)
Q Consensus 195 V~PP~y~~~~s~e~iv~yf~~Vaeatp-dLPIiLYN~ 230 (239)
..++.+-...+ ..+++.+.+..+ ++|++++.-
T Consensus 148 ~~~~~~~~~~~----~~~~~~i~~~~~~~~~v~~~gg 180 (201)
T cd00945 148 TSTGFGGGGAT----VEDVKLMKEAVGGRVGVKAAGG 180 (201)
T ss_pred eCCCCCCCCCC----HHHHHHHHHhcccCCcEEEECC
Confidence 88754321102 245566666553 467877654
No 263
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=79.89 E-value=4.5 Score=35.88 Aligned_cols=58 Identities=12% Similarity=-0.026 Sum_probs=36.5
Q ss_pred EEEecC-CCCHHHHHHHHHHHHhCCCCEEEECCCCCC-CCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 166 VMVQIG-GTCFQEVVELAKHAESLNVHAVLCLPELFF-TPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 166 VIaGVg-~~St~eAIelar~A~~aGAdaVlV~PP~y~-~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.++|++ .++.+++.+ |.+.|+|.+.+.|-+.. ++.....-.+.++.+++.+ ++||+--
T Consensus 111 ~iiG~s~~~s~~~a~~----A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~-~iPvvAI 170 (221)
T PRK06512 111 MIVGFGNLRDRHGAME----IGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI-EIPCIVQ 170 (221)
T ss_pred CEEEecCCCCHHHHHH----hhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC-CCCEEEE
Confidence 367987 566666544 67899999999974311 1101112245566677777 7998753
No 264
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=79.72 E-value=12 Score=35.49 Aligned_cols=88 Identities=15% Similarity=0.053 Sum_probs=56.5
Q ss_pred hcCC-CCEEEeccccCCcC--CCHHHHHHHHHHHHH---HhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCC
Q psy9602 125 MAPI-IDQMVNGTTGEGVS--MTTAERKLNLEAWMT---EAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPE 198 (239)
Q Consensus 125 ~~gg-~glvV~GstGE~~s--LT~eER~~li~~vve---~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP 198 (239)
.+.| .+++|.++.|-... .+.-+ .+..+.+ .+++ ++|||+.=|=.+-.++++ |..+||+++.+--|
T Consensus 231 ~~~G~d~I~vsnhgG~~~d~~~~~~~---~L~~i~~~~~~~~~-~~~vi~~GGIr~G~Dv~k----alaLGA~aV~iG~~ 302 (344)
T cd02922 231 AEYGVDGIVLSNHGGRQLDTAPAPIE---VLLEIRKHCPEVFD-KIEVYVDGGVRRGTDVLK----ALCLGAKAVGLGRP 302 (344)
T ss_pred HHcCCCEEEEECCCcccCCCCCCHHH---HHHHHHHHHHHhCC-CceEEEeCCCCCHHHHHH----HHHcCCCEEEECHH
Confidence 4444 56777777665432 22222 2333333 3455 799998555445555443 56789999999999
Q ss_pred CCCCCC--CHHHHHHHHHHHHhhC
Q psy9602 199 LFFTPA--SVEDLVDYLRDVGEAA 220 (239)
Q Consensus 199 ~y~~~~--s~e~iv~yf~~Vaeat 220 (239)
+.+.+. .++.+.+++..+.++.
T Consensus 303 ~l~~l~~~G~~gv~~~l~~l~~EL 326 (344)
T cd02922 303 FLYALSAYGEEGVEKAIQILKDEI 326 (344)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHH
Confidence 987653 7888999988887753
No 265
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=79.67 E-value=19 Score=30.55 Aligned_cols=86 Identities=19% Similarity=0.057 Sum_probs=45.9
Q ss_pred hhhcCCCCE-EEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602 123 LRMAPIIDQ-MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF 201 (239)
Q Consensus 123 ~~~~gg~gl-vV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~ 201 (239)
...+.|.+. .+-+.++ ...-.++++.+.+. ++++++++....+ ..+.++.+.+.|+|.+.+.|.+--
T Consensus 71 ~~~~~Gad~i~vh~~~~------~~~~~~~i~~~~~~----g~~~~~~~~~~~t--~~~~~~~~~~~g~d~v~~~pg~~~ 138 (206)
T TIGR03128 71 QAFAAGADIVTVLGVAD------DATIKGAVKAAKKH----GKEVQVDLINVKD--KVKRAKELKELGADYIGVHTGLDE 138 (206)
T ss_pred HHHHcCCCEEEEeccCC------HHHHHHHHHHHHHc----CCEEEEEecCCCC--hHHHHHHHHHcCCCEEEEcCCcCc
Confidence 335556654 3444332 12234555555442 5899888643332 455666678889999988754421
Q ss_pred CCCCHHHHHHHHHHHHhhCC
Q psy9602 202 TPASVEDLVDYLRDVGEAAP 221 (239)
Q Consensus 202 ~~~s~e~iv~yf~~Vaeatp 221 (239)
..+. ..-.+..+.+.+..+
T Consensus 139 ~~~~-~~~~~~i~~l~~~~~ 157 (206)
T TIGR03128 139 QAKG-QNPFEDLQTILKLVK 157 (206)
T ss_pred ccCC-CCCHHHHHHHHHhcC
Confidence 1111 112345566666553
No 266
>cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. ATP-dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site residues. The adenylation and C-terminal OB-f
Probab=79.55 E-value=5.7 Score=33.98 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=50.8
Q ss_pred CCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 139 EGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 139 E~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
+...++..||+++++.++....+ ++.++-.....+.++..++.+.+.+.|-.|+|+=.|.
T Consensus 124 ~l~~~p~~eR~~~L~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGim~K~~~ 183 (201)
T cd07898 124 SLLDRPLRERRQLLEELFVEIPG-RIRIAPALPVESAEELEAAFARARARGNEGLMLKDPD 183 (201)
T ss_pred chhhCCHHHHHHHHHHhhcCCCC-cEEEeeeEEcCCHHHHHHHHHHHHHcCCceEEEeCCC
Confidence 34568999999999999877656 6777667777888999999999999999999998865
No 267
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=79.48 E-value=16 Score=30.69 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=38.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+.-++......+.....+..+.....++|++++.++.. +.. .++.+.+ . ++|+++++.+
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~----~~~----~l~~~~~-~-~ipvV~~~~~ 87 (267)
T cd06283 29 GYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGN----NKE----LYQRLAK-N-GKPVVLVDRK 87 (267)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCC----ChH----HHHHHhc-C-CCCEEEEcCC
Confidence 34555555555666667777778888899999887531 222 2444443 4 6899998875
No 268
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=79.47 E-value=5.1 Score=33.66 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=48.5
Q ss_pred CcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCC
Q psy9602 140 GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPE 198 (239)
Q Consensus 140 ~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP 198 (239)
...++.+||+++++.++....+ .+.++-.....+.+++.++.+.+.+.|..|+|+=.|
T Consensus 128 l~~~p~~eR~~~L~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~g~EG~v~K~~ 185 (202)
T PF01068_consen 128 LLDLPYEERRELLEELLEPPPP-RIRIVESYVVNSKEELEELFEEAIDQGFEGLVLKDP 185 (202)
T ss_dssp CTTSCHHHHHHHHHHHBG-BTS-SEEEEEEEEESSHHHHHHHHHHHHHTTSSEEEEEET
T ss_pred eeeccHHHHHHHHHHhhccCCC-ceeEeeeecCCCHHHHHHHHHHHHHcCCceEEEECC
Confidence 4678999999999999955555 677776777789999999999999999999999543
No 269
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=79.47 E-value=22 Score=31.68 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+.++++.+.+++...+..+++.....+.+...+..+...+.++|++++.|+.. . .+ ..+..+.+ . ++|+++
T Consensus 79 ~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~--~~---~~~~~l~~-~-~iPvV~ 149 (342)
T PRK10014 79 YAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAG--S--SD---DLREMAEE-K-GIPVVF 149 (342)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC--C--cH---HHHHHHhh-c-CCCEEE
Confidence 44455544444433234555555555666667778888888999999987531 1 12 23334443 4 799999
Q ss_pred EeCC
Q psy9602 228 YHIP 231 (239)
Q Consensus 228 YN~P 231 (239)
.|.+
T Consensus 150 ~~~~ 153 (342)
T PRK10014 150 ASRA 153 (342)
T ss_pred EecC
Confidence 9875
No 270
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=79.39 E-value=9 Score=36.86 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=46.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhh
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaea 219 (239)
..|+.+. ++.+++.. ++||++ ||.. .+-++.|.++|+|++.|..--.-+..+-..-++.+.++.++
T Consensus 213 ~~~~w~~----i~~l~~~~---~~PvivKGv~~------~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~a 279 (367)
T TIGR02708 213 QKLSPRD----IEEIAGYS---GLPVYVKGPQC------PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEA 279 (367)
T ss_pred CCCCHHH----HHHHHHhc---CCCEEEeCCCC------HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHH
Confidence 5677754 44445554 569998 6664 67788889999999999863321110111224556777776
Q ss_pred C-CCCcEEE
Q psy9602 220 A-PATPLFY 227 (239)
Q Consensus 220 t-pdLPIiL 227 (239)
. +++||++
T Consensus 280 v~~~i~vi~ 288 (367)
T TIGR02708 280 VDKRVPIVF 288 (367)
T ss_pred hCCCCcEEe
Confidence 6 2488765
No 271
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=79.32 E-value=22 Score=35.50 Aligned_cols=93 Identities=8% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEECC-C
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ-IGGTCFQEVVELAKHAESLNVHAVLCLP-E 198 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaG-Vg~~St~eAIelar~A~~aGAdaVlV~P-P 198 (239)
++..++.+++++++-+ ..=....-.+.++.+.+...+ ++||+| |.. .+.++.|.++|||+|.+.- |
T Consensus 253 ~~~l~~ag~d~i~iD~----~~g~~~~~~~~i~~ik~~~p~--~~vi~g~v~t------~e~a~~a~~aGaD~i~vg~g~ 320 (505)
T PLN02274 253 LEHLVKAGVDVVVLDS----SQGDSIYQLEMIKYIKKTYPE--LDVIGGNVVT------MYQAQNLIQAGVDGLRVGMGS 320 (505)
T ss_pred HHHHHHcCCCEEEEeC----CCCCcHHHHHHHHHHHHhCCC--CcEEEecCCC------HHHHHHHHHcCcCEEEECCCC
Q ss_pred CCCCCCC---------HHHHHHHHHHHHhhCCCCcEEE
Q psy9602 199 LFFTPAS---------VEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 199 ~y~~~~s---------~e~iv~yf~~VaeatpdLPIiL 227 (239)
-+... + +...+..+.++++.. ++|||.
T Consensus 321 G~~~~-t~~~~~~g~~~~~~i~~~~~~~~~~-~vpVIa 356 (505)
T PLN02274 321 GSICT-TQEVCAVGRGQATAVYKVASIAAQH-GVPVIA 356 (505)
T ss_pred Ccccc-CccccccCCCcccHHHHHHHHHHhc-CCeEEE
No 272
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=79.32 E-value=21 Score=33.42 Aligned_cols=90 Identities=9% Similarity=0.073 Sum_probs=59.9
Q ss_pred ccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec--C--C-CCHHHHHHHHHHHHhCCCCEEEECCCC----CCCCC-
Q psy9602 135 GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI--G--G-TCFQEVVELAKHAESLNVHAVLCLPEL----FFTPA- 204 (239)
Q Consensus 135 GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV--g--~-~St~eAIelar~A~~aGAdaVlV~PP~----y~~~~- 204 (239)
+-.|-...-..+.-.++++.+.+.++ +||.+=+ + . .+.++++++++.++++|++++.|.+=. .|.+.
T Consensus 98 ~g~Gs~Ll~~p~~~~~iv~av~~~~~---~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~ 174 (318)
T TIGR00742 98 GNFGACLMGNADLVADCVKAMQEAVN---IPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKE 174 (318)
T ss_pred CCeehHhhcCHHHHHHHHHHHHHHhC---CCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccc
Confidence 33465566677777888888888763 5777633 3 2 245789999999999999999888642 12220
Q ss_pred ---CHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 205 ---SVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 205 ---s~e~iv~yf~~VaeatpdLPIiL 227 (239)
....-.++..++.++.|++||+.
T Consensus 175 ~~~~~~~~~~~i~~vk~~~~~ipVi~ 200 (318)
T TIGR00742 175 NREIPPLRYERVYQLKKDFPHLTIEI 200 (318)
T ss_pred cccCCchhHHHHHHHHHhCCCCcEEE
Confidence 01112455667887776799774
No 273
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=79.26 E-value=25 Score=29.54 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=50.2
Q ss_pred EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCH----------HHHHHHHHHHHhCCCCEEEEC---C
Q psy9602 131 QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCF----------QEVVELAKHAESLNVHAVLCL---P 197 (239)
Q Consensus 131 lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St----------~eAIelar~A~~aGAdaVlV~---P 197 (239)
++-.|..|+...-- .+|. +..+...+. --|++.+|.++. ++.-++++.+++.|+.-+++. |
T Consensus 46 v~N~Gi~G~tt~~~-~~rl---~~~l~~~~p--d~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P 119 (191)
T PRK10528 46 VVNASISGDTSQQG-LARL---PALLKQHQP--RWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLP 119 (191)
T ss_pred EEecCcCcccHHHH-HHHH---HHHHHhcCC--CEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 66667888665411 1222 222222222 235555655553 344456777777888888874 3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 198 ELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 198 P~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
|.+... ..+.+.+.++.++++. ++|++
T Consensus 120 ~~~~~~-~~~~~~~~~~~~a~~~-~v~~i 146 (191)
T PRK10528 120 ANYGRR-YNEAFSAIYPKLAKEF-DIPLL 146 (191)
T ss_pred CcccHH-HHHHHHHHHHHHHHHh-CCCcc
Confidence 333222 3456777889999988 67765
No 274
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=79.26 E-value=8.7 Score=33.15 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=53.4
Q ss_pred hcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC------------CCCHHHHHHHHHHHHhCCCCE
Q psy9602 125 MAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG------------GTCFQEVVELAKHAESLNVHA 192 (239)
Q Consensus 125 ~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg------------~~St~eAIelar~A~~aGAda 192 (239)
++.|++.++.|+.-.. -.++++.+.+... +-++++.+. ..+..+.+++++..++.|++.
T Consensus 92 ~~~Gad~vvigs~~l~-------dp~~~~~i~~~~g--~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~ 162 (234)
T cd04732 92 LDLGVSRVIIGTAAVK-------NPELVKELLKEYG--GERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKA 162 (234)
T ss_pred HHcCCCEEEECchHHh-------ChHHHHHHHHHcC--CceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCE
Confidence 4556766666665421 1334455555443 224444432 123446788999999999999
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 193 VlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
++++.=.--.. ....-.+.++.+.+.+ ++||+.
T Consensus 163 iii~~~~~~g~-~~g~~~~~i~~i~~~~-~ipvi~ 195 (234)
T cd04732 163 IIYTDISRDGT-LSGPNFELYKELAAAT-GIPVIA 195 (234)
T ss_pred EEEEeecCCCc-cCCCCHHHHHHHHHhc-CCCEEE
Confidence 99985221111 1112367788888888 799764
No 275
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=79.17 E-value=41 Score=34.39 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=64.0
Q ss_pred HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceE--EEe---cCCCCHHHHHHHHHHHHhCCCCEEE
Q psy9602 121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTV--MVQ---IGGTCFQEVVELAKHAESLNVHAVL 194 (239)
Q Consensus 121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpV--IaG---Vg~~St~eAIelar~A~~aGAdaVl 194 (239)
++...+.|.+++ ++= .|++-+ .++..++.++.....+ .++ ....+.+..+++++.+.++|||.+.
T Consensus 103 v~~a~~~Gid~~rifd------~lnd~~---~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~ 173 (593)
T PRK14040 103 VERAVKNGMDVFRVFD------AMNDPR---NLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLC 173 (593)
T ss_pred HHHHHhcCCCEEEEee------eCCcHH---HHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEE
Confidence 444566666655 553 444432 3444444444212232 122 2334578899999999999999999
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 195 V~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
+....... ++.++.+.++.|.+.. ++||-++-
T Consensus 174 i~Dt~G~l--~P~~~~~lv~~lk~~~-~~pi~~H~ 205 (593)
T PRK14040 174 IKDMAGLL--KPYAAYELVSRIKKRV-DVPLHLHC 205 (593)
T ss_pred ECCCCCCc--CHHHHHHHHHHHHHhc-CCeEEEEE
Confidence 98766533 7899999999999998 89987653
No 276
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=78.99 E-value=16 Score=31.40 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=37.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--CHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA--SVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--s~e~iv~yf~~VaeatpdLPIiL 227 (239)
.++++..+.. . +.++.+.+.|+|.+.+.++.--... .+....++++.+.+.+ ++||++
T Consensus 102 ~i~~i~~v~~--~----~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~ 161 (236)
T cd04730 102 GIKVIPTVTS--V----EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIA 161 (236)
T ss_pred CCEEEEeCCC--H----HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEE
Confidence 5788776642 2 5567777889999998764211110 1123567888888887 799886
No 277
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=78.81 E-value=6.4 Score=37.10 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=60.1
Q ss_pred cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC-C------------
Q psy9602 138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP-A------------ 204 (239)
Q Consensus 138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~-~------------ 204 (239)
|....-..|.-.+|++.+.+.. ++||++=++- +..+..+.|+.+.++|+|++.+..-..... .
T Consensus 139 ~~~l~~~~e~l~~l~~~vk~~~---~~Pv~vKl~P-~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~ 214 (310)
T COG0167 139 GRALGQDPELLEKLLEAVKAAT---KVPVFVKLAP-NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANE 214 (310)
T ss_pred hhhhccCHHHHHHHHHHHHhcc---cCceEEEeCC-CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcC
Confidence 3333445567777777777765 5899999988 999999999999999999999987332111 0
Q ss_pred --------CHHHHHHHHHHHHhhCC-CCcEE
Q psy9602 205 --------SVEDLVDYLRDVGEAAP-ATPLF 226 (239)
Q Consensus 205 --------s~e~iv~yf~~Vaeatp-dLPIi 226 (239)
-.+--.+..++++.... ++|||
T Consensus 215 ~GGLSG~~ikp~al~~v~~l~~~~~~~ipII 245 (310)
T COG0167 215 TGGLSGPPLKPIALRVVAELYKRLGGDIPII 245 (310)
T ss_pred CCCcCcccchHHHHHHHHHHHHhcCCCCcEE
Confidence 12334567777777751 37876
No 278
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=78.57 E-value=46 Score=30.87 Aligned_cols=108 Identities=14% Similarity=0.106 Sum_probs=67.2
Q ss_pred HHhhhcCCCCEEEeccccC---------CcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC-------------------
Q psy9602 121 ITLRMAPIIDQMVNGTTGE---------GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG------------------- 172 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE---------~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~------------------- 172 (239)
++.+-++|.|+++.|.+.= ...+..++...-++.+++.+......+++++.+
T Consensus 39 y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~ 118 (336)
T cd02932 39 YGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLP 118 (336)
T ss_pred HHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccc
Confidence 4455678899887764421 134667788888888877665534566666411
Q ss_pred -------------------------CC-------HHHHHHHHHHHHhCCCCEEEECCCC-----------CCCC------
Q psy9602 173 -------------------------TC-------FQEVVELAKHAESLNVHAVLCLPEL-----------FFTP------ 203 (239)
Q Consensus 173 -------------------------~S-------t~eAIelar~A~~aGAdaVlV~PP~-----------y~~~------ 203 (239)
.+ .++-++-|+.|+++|+|+|-+-.-+ ..+-
T Consensus 119 ~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGg 198 (336)
T cd02932 119 PGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGG 198 (336)
T ss_pred cccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCC
Confidence 11 2333456788888999999887532 2221
Q ss_pred -C--CHHHHHHHHHHHHhhCC-CCcEEEE
Q psy9602 204 -A--SVEDLVDYLRDVGEAAP-ATPLFYY 228 (239)
Q Consensus 204 -~--s~e~iv~yf~~Vaeatp-dLPIiLY 228 (239)
. ..+.+.+-+++|.++++ +.||.+=
T Consensus 199 sl~nr~rf~~eiv~aIR~~vG~d~~v~vr 227 (336)
T cd02932 199 SLENRMRFLLEVVDAVRAVWPEDKPLFVR 227 (336)
T ss_pred CHHHHhHHHHHHHHHHHHHcCCCceEEEE
Confidence 0 23456777778877774 6788773
No 279
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=78.26 E-value=58 Score=31.77 Aligned_cols=107 Identities=15% Similarity=0.071 Sum_probs=82.5
Q ss_pred hHHhhhcCCCC-EEEeccccCC-----cCCCHHHHHHHHHHHHHHhcCCCceEEE---ecCCCCHHHHHHHHHHHHhCCC
Q psy9602 120 GITLRMAPIID-QMVNGTTGEG-----VSMTTAERKLNLEAWMTEAKTHGFTVMV---QIGGTCFQEVVELAKHAESLNV 190 (239)
Q Consensus 120 ~v~~~~~gg~g-lvV~GstGE~-----~sLT~eER~~li~~vve~~~G~rvpVIa---GVg~~St~eAIelar~A~~aGA 190 (239)
.++..++.+.. +-++..+++. ..+|.+|-.+.+..+++.+..+.+++.. -.+..+.+.+++.++.+.+.||
T Consensus 81 ~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga 160 (409)
T COG0119 81 DIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGA 160 (409)
T ss_pred hHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCC
Confidence 34555666665 4588888865 4699999999999999988775566663 3457789999999999999999
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHhhCC-CCcEEEE
Q psy9602 191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAP-ATPLFYY 228 (239)
Q Consensus 191 daVlV~PP~y~~~~s~e~iv~yf~~Vaeatp-dLPIiLY 228 (239)
+.+-+..-..+. ++.++.+.++.|.+..| +.||-++
T Consensus 161 ~~i~l~DTvG~~--~P~~~~~~i~~l~~~v~~~~~l~~H 197 (409)
T COG0119 161 DRINLPDTVGVA--TPNEVADIIEALKANVPNKVILSVH 197 (409)
T ss_pred cEEEECCCcCcc--CHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 999888755433 78999999999999885 2555543
No 280
>PRK04302 triosephosphate isomerase; Provisional
Probab=78.24 E-value=46 Score=29.05 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=55.8
Q ss_pred hcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC---
Q psy9602 125 MAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF--- 201 (239)
Q Consensus 125 ~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~--- 201 (239)
.+.|++.++.|++ | ..+..+|-.++++.+.+. ++.+|+.++. .+.++.+.+.|.+.+-+.|+...
T Consensus 82 ~~~G~~~vii~~s-e-r~~~~~e~~~~v~~a~~~----Gl~~I~~v~~------~~~~~~~~~~~~~~I~~~p~~~igt~ 149 (223)
T PRK04302 82 KDAGAVGTLINHS-E-RRLTLADIEAVVERAKKL----GLESVVCVNN------PETSAAAAALGPDYVAVEPPELIGTG 149 (223)
T ss_pred HHcCCCEEEEecc-c-cccCHHHHHHHHHHHHHC----CCeEEEEcCC------HHHHHHHhcCCCCEEEEeCccccccC
Confidence 3456666666654 2 227778877777777663 3566665555 24455667889998888775211
Q ss_pred -C---CCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 202 -T---PASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 202 -~---~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
. . +++.+.++++.+.+..+++||+
T Consensus 150 ~~~~~~-~~~~i~~~~~~ir~~~~~~pvi 177 (223)
T PRK04302 150 IPVSKA-KPEVVEDAVEAVKKVNPDVKVL 177 (223)
T ss_pred CCCCcC-CHHHHHHHHHHHHhccCCCEEE
Confidence 1 2 4677777777777654367775
No 281
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=78.20 E-value=34 Score=31.66 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=50.2
Q ss_pred ceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC-----------------CCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 164 FTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP-----------------ASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 164 vpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~-----------------~s~e~iv~yf~~VaeatpdLPIi 226 (239)
.-.++-.|..+.+.+++.++...+.|||++=+--|+.-+. .+.+..++.++.+-+.-++.|++
T Consensus 19 ~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Piv 98 (265)
T COG0159 19 LIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIV 98 (265)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 4445577888999999999999999999999999883211 14577778888887654477877
Q ss_pred EEeC
Q psy9602 227 YYHI 230 (239)
Q Consensus 227 LYN~ 230 (239)
|.-|
T Consensus 99 lm~Y 102 (265)
T COG0159 99 LMTY 102 (265)
T ss_pred EEEe
Confidence 6433
No 282
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=78.08 E-value=21 Score=30.19 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.++++.+.+.+...+..+++.....+.++..+..+...+.++|++++.++.. + +.. ++.+ ... ++|+++.
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~----~-~~~---~~~l-~~~-~iPvv~~ 84 (268)
T cd06273 15 ARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDH----S-PAL---LDLL-ARR-GVPYVAT 84 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC----C-HHH---HHHH-HhC-CCCEEEE
Confidence 3444444333332245666655666777777777777777888888875431 2 222 2333 334 6888877
Q ss_pred eC
Q psy9602 229 HI 230 (239)
Q Consensus 229 N~ 230 (239)
+.
T Consensus 85 ~~ 86 (268)
T cd06273 85 WN 86 (268)
T ss_pred cC
Confidence 64
No 283
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=77.83 E-value=26 Score=32.19 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHH----HHHHhhC
Q psy9602 173 TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYL----RDVGEAA 220 (239)
Q Consensus 173 ~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf----~~Vaeat 220 (239)
.-++-.+++++...++|||++++..|..... +++...+|+ +.|.++.
T Consensus 174 ~it~~~~~~~~~~ieaGad~i~i~d~~~~~l-sp~~f~ef~~P~~k~i~~~i 224 (335)
T cd00717 174 KLTDATIEYLKAQIEAGAQAVQIFDSWAGAL-SPEDFEEFVLPYLKRIIEEV 224 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeCcccccC-CHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888889999999887743222 666666444 5666654
No 284
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=77.66 E-value=22 Score=33.28 Aligned_cols=76 Identities=9% Similarity=0.060 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT 223 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL 223 (239)
+.+|..+.++.+. + +..+.+.++. ..+..+.++.+.++|++.+.+...+. +.+...+..+.+.+..|++
T Consensus 68 ~~~~~~~~i~~vk----~-~l~v~~~~~~--~~~~~~~~~~l~eagv~~I~vd~~~G----~~~~~~~~i~~ik~~~p~v 136 (325)
T cd00381 68 SIEEQAEEVRKVK----G-RLLVGAAVGT--REDDKERAEALVEAGVDVIVIDSAHG----HSVYVIEMIKFIKKKYPNV 136 (325)
T ss_pred CHHHHHHHHHHhc----c-CceEEEecCC--ChhHHHHHHHHHhcCCCEEEEECCCC----CcHHHHHHHHHHHHHCCCc
Confidence 5577666555543 4 4444444433 36778899999999999998875442 2356777777777777678
Q ss_pred cEEEEeC
Q psy9602 224 PLFYYHI 230 (239)
Q Consensus 224 PIiLYN~ 230 (239)
||++=|.
T Consensus 137 ~Vi~G~v 143 (325)
T cd00381 137 DVIAGNV 143 (325)
T ss_pred eEEECCC
Confidence 9987444
No 285
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=77.66 E-value=8.7 Score=37.13 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=58.3
Q ss_pred CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC--C
Q psy9602 127 PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP--A 204 (239)
Q Consensus 127 gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~--~ 204 (239)
|+.+++|.++.|-..--... -..++..+++.+++ ++|||+.=|=.+-.+++ .|..+|||++++--|+.|.. .
T Consensus 274 G~d~I~vsnhGGr~~d~~~~-t~~~L~ei~~~~~~-~~~vi~dGGIr~G~Dv~----KALaLGA~~v~iGr~~l~~l~~~ 347 (383)
T cd03332 274 GVDGVVVSNHGGRQVDGSIA-ALDALPEIVEAVGD-RLTVLFDSGVRTGADIM----KALALGAKAVLIGRPYAYGLALG 347 (383)
T ss_pred CCCEEEEcCCCCcCCCCCcC-HHHHHHHHHHHhcC-CCeEEEeCCcCcHHHHH----HHHHcCCCEEEEcHHHHHHHHhc
Confidence 44567788887754311111 24466666677777 89999844433333333 46678999999999987543 1
Q ss_pred CHHHHHHHHHHHHhhC
Q psy9602 205 SVEDLVDYLRDVGEAA 220 (239)
Q Consensus 205 s~e~iv~yf~~Vaeat 220 (239)
.++++.++++.+.++.
T Consensus 348 G~~gv~~~l~~l~~El 363 (383)
T cd03332 348 GEDGVEHVLRNLLAEL 363 (383)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 7888999888776653
No 286
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=77.62 E-value=25 Score=32.29 Aligned_cols=58 Identities=10% Similarity=-0.007 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-CHHHH----HHHHHHHHhhCC--CCcEEEEeCC
Q psy9602 174 CFQEVVELAKHAESLNVHAVLCLPELFFTPA-SVEDL----VDYLRDVGEAAP--ATPLFYYHIP 231 (239)
Q Consensus 174 St~eAIelar~A~~aGAdaVlV~PP~y~~~~-s~e~i----v~yf~~Vaeatp--dLPIiLYN~P 231 (239)
-++..+++++...++|+|++.+..|...... +++.. ..|++.+.+..- +.+.+++.+-
T Consensus 178 i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG 242 (340)
T TIGR01463 178 ALDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICG 242 (340)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECC
Confidence 3566788888888999999999888643221 55443 466678887731 3455666553
No 287
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=77.48 E-value=26 Score=32.74 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=39.5
Q ss_pred HhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q psy9602 122 TLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLC 195 (239)
Q Consensus 122 ~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV 195 (239)
...++.+..++ +..+.|-. +...++++.+.+... .+||++|.. ...+.++.+.++|||++.+
T Consensus 100 ~~l~eagv~~I~vd~~~G~~-----~~~~~~i~~ik~~~p--~v~Vi~G~v-----~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 100 EALVEAGVDVIVIDSAHGHS-----VYVIEMIKFIKKKYP--NVDVIAGNV-----VTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHhcCCCEEEEECCCCCc-----HHHHHHHHHHHHHCC--CceEEECCC-----CCHHHHHHHHhcCCCEEEE
Confidence 34456566654 44444322 566778888877643 488888443 2345567777899999998
No 288
>PRK14742 thrL thr operon leader peptide; Provisional
Probab=77.37 E-value=2.2 Score=26.26 Aligned_cols=16 Identities=69% Similarity=0.750 Sum_probs=10.6
Q ss_pred ceeEEEEEEEeecCCCC
Q psy9602 2 ETTITTVTTITTGGGSG 18 (239)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (239)
-|||-| ||+|||-|.|
T Consensus 13 ~ttiit-tt~ttg~gag 28 (28)
T PRK14742 13 NTTIIT-TTETTGYGAG 28 (28)
T ss_pred EEEEEE-EEEeccccCC
Confidence 345543 6789998865
No 289
>PLN02757 sirohydrochlorine ferrochelatase
Probab=77.33 E-value=40 Score=28.34 Aligned_cols=94 Identities=7% Similarity=0.130 Sum_probs=61.4
Q ss_pred CCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCc-eEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--C
Q psy9602 129 IDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGF-TVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA--S 205 (239)
Q Consensus 129 ~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rv-pVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--s 205 (239)
.++++.|+-+--.. ..++-.++++.+.+......+ ..++.....+++++++... +.|++-|.|.| +++.+. .
T Consensus 14 ~~lllvgHGSrd~~-a~~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~---~~g~~~vvVvP-~FL~~G~H~ 88 (154)
T PLN02757 14 DGVVIVDHGSRRKE-SNLMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCV---EQGASRVIVSP-FFLSPGRHW 88 (154)
T ss_pred cEEEEEeCCCCCHH-HHHHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHH---HCCCCEEEEEE-hhhcCCcch
Confidence 36778887776554 556666666666654332011 2334567889999987543 46999999985 443332 4
Q ss_pred HHHHHHHHHHHHhhCCCCcEEE
Q psy9602 206 VEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 206 ~e~iv~yf~~VaeatpdLPIiL 227 (239)
.++|-+....+.+..|++.|.+
T Consensus 89 ~~DIp~~v~~~~~~~p~~~i~~ 110 (154)
T PLN02757 89 QEDIPALTAEAAKEHPGVKYLV 110 (154)
T ss_pred HhHHHHHHHHHHHHCCCcEEEE
Confidence 6788888888888877766554
No 290
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=77.24 E-value=25 Score=30.17 Aligned_cols=88 Identities=16% Similarity=0.041 Sum_probs=53.6
Q ss_pred HhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602 122 TLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF 201 (239)
Q Consensus 122 ~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~ 201 (239)
+...+.|.+.+++|.+ .++.++-.++++..... .+.+++.+. +.++ ++.+.+.|++.+.+.+ ...
T Consensus 88 ~~~~~~Gad~v~l~~~----~~~~~~~~~~~~~~~~~----g~~~~v~v~--~~~e----~~~~~~~g~~~i~~t~-~~~ 152 (217)
T cd00331 88 YEARAAGADAVLLIVA----ALDDEQLKELYELAREL----GMEVLVEVH--DEEE----LERALALGAKIIGINN-RDL 152 (217)
T ss_pred HHHHHcCCCEEEEeec----cCCHHHHHHHHHHHHHc----CCeEEEEEC--CHHH----HHHHHHcCCCEEEEeC-CCc
Confidence 3445667766655555 34556667777766542 356666664 4444 6777889999999884 332
Q ss_pred CCCCHHHHHHHHHHHHhhCC-CCcEE
Q psy9602 202 TPASVEDLVDYLRDVGEAAP-ATPLF 226 (239)
Q Consensus 202 ~~~s~e~iv~yf~~Vaeatp-dLPIi 226 (239)
.. ....+ ++++.+.+..| ++|++
T Consensus 153 ~~-~~~~~-~~~~~l~~~~~~~~pvi 176 (217)
T cd00331 153 KT-FEVDL-NTTERLAPLIPKDVILV 176 (217)
T ss_pred cc-cCcCH-HHHHHHHHhCCCCCEEE
Confidence 22 22222 77788887742 67776
No 291
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=77.19 E-value=4.4 Score=36.99 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=57.2
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCC--------HHHHHHHHHHHHhCCCCEEEECCC-----CCCCCCCHH
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTC--------FQEVVELAKHAESLNVHAVLCLPE-----LFFTPASVE 207 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~S--------t~eAIelar~A~~aGAdaVlV~PP-----~y~~~~s~e 207 (239)
..|+.++|.++|+.+.+. ...|+.-++..+ +.+.|++++...++||+.|++-.= -.|.. ..+
T Consensus 108 i~l~~~~r~~~I~~~~~~----Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~-~g~ 182 (244)
T PF02679_consen 108 IDLPEEERLRLIRKAKEE----GFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDN-DGE 182 (244)
T ss_dssp S---HHHHHHHHHHHCCT----TSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-T-TS-
T ss_pred eeCCHHHHHHHHHHHHHC----CCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCC-CCC
Confidence 489999999999888754 478888777554 557788999999999999999876 33444 344
Q ss_pred HHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 208 DLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 208 ~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
--.+.+..|.+.. ++.-++|..|.
T Consensus 183 ~r~d~v~~i~~~~-~~~~lifEAp~ 206 (244)
T PF02679_consen 183 VRTDLVEKIIERL-GLEKLIFEAPQ 206 (244)
T ss_dssp B-HHHHHHHHTTS--GGGEEEE--S
T ss_pred ccHHHHHHHHHhC-CHhHEEEeCCC
Confidence 4556677788888 57778888875
No 292
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=77.17 E-value=10 Score=35.15 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 151 NLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 151 li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+++.+.+. .++|++-|++ ++.++.++++|+|++.+...---........+..+.++.+.+ ++||+.
T Consensus 101 ~i~~lk~~----g~~v~~~v~s------~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~-~iPvia 166 (307)
T TIGR03151 101 YIPRLKEN----GVKVIPVVAS------VALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAV-SIPVIA 166 (307)
T ss_pred HHHHHHHc----CCEEEEEcCC------HHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh-CCCEEE
Confidence 55555443 4788876644 467789999999999997642111101112477788888888 799875
No 293
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=77.15 E-value=9.7 Score=35.79 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=47.2
Q ss_pred cCCcCCCHHHHHHHHHHHHHHhcC----CCceEEEecCCCCH-HHHHHHHHHHHhCCCCEEEECCC
Q psy9602 138 GEGVSMTTAERKLNLEAWMTEAKT----HGFTVMVQIGGTCF-QEVVELAKHAESLNVHAVLCLPE 198 (239)
Q Consensus 138 GE~~sLT~eER~~li~~vve~~~G----~rvpVIaGVg~~St-~eAIelar~A~~aGAdaVlV~PP 198 (239)
|+-..-..+.-.++++.+.+.+++ .++||++=++.+-+ ++..++++.++++|+|++.+..-
T Consensus 181 ~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT 246 (335)
T TIGR01036 181 GLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNT 246 (335)
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECC
Confidence 444455667777888888887751 03899999987765 48889999999999999998763
No 294
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=76.99 E-value=13 Score=35.27 Aligned_cols=42 Identities=12% Similarity=0.021 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCceEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602 147 ERKLNLEAWMTEAKTHGFTVMVQ-IGGTCFQEVVELAKHAESLNVHAVLCL 196 (239)
Q Consensus 147 ER~~li~~vve~~~G~rvpVIaG-Vg~~St~eAIelar~A~~aGAdaVlV~ 196 (239)
.-.++++.+.+..+ .+|||+| |+ +.+.++.+.++|+|++.+.
T Consensus 126 ~~~e~I~~ir~~~p--~~~vi~g~V~------t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 126 SVINMIQHIKKHLP--ETFVIAGNVG------TPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHHHhhCC--CCeEEEEecC------CHHHHHHHHHcCcCEEEEC
Confidence 33445777777664 4899997 66 4566777888999999876
No 295
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=76.92 E-value=20 Score=32.68 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=64.7
Q ss_pred hhHHhhhcCCCCEEEecccc---C------CcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC-----------------
Q psy9602 119 VGITLRMAPIIDQMVNGTTG---E------GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG----------------- 172 (239)
Q Consensus 119 ~~v~~~~~gg~glvV~GstG---E------~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~----------------- 172 (239)
..+..+-.+|.|+++.+.+. + ...|..++...-++.+++.+......+++++.+
T Consensus 37 ~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~ 116 (327)
T cd02803 37 EYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAP 116 (327)
T ss_pred HHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCC
Confidence 34555567888887666431 1 224566777777777777654433344443321
Q ss_pred --------------CC-------HHHHHHHHHHHHhCCCCEEEECCCCCC------CCC----C----------HHHHHH
Q psy9602 173 --------------TC-------FQEVVELAKHAESLNVHAVLCLPELFF------TPA----S----------VEDLVD 211 (239)
Q Consensus 173 --------------~S-------t~eAIelar~A~~aGAdaVlV~PP~y~------~~~----s----------~e~iv~ 211 (239)
.+ .++-++-|+.|+++|+|+|-+-.-+.| .|. + ..-+.+
T Consensus 117 s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~e 196 (327)
T cd02803 117 SAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLE 196 (327)
T ss_pred CCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHH
Confidence 11 233445778889999999988764322 110 1 123456
Q ss_pred HHHHHHhhCC-CCcEEEEeCC
Q psy9602 212 YLRDVGEAAP-ATPLFYYHIP 231 (239)
Q Consensus 212 yf~~Vaeatp-dLPIiLYN~P 231 (239)
-.++|.++++ +.||.+=-.|
T Consensus 197 ii~avr~~~g~d~~i~vris~ 217 (327)
T cd02803 197 IVAAVREAVGPDFPVGVRLSA 217 (327)
T ss_pred HHHHHHHHcCCCceEEEEech
Confidence 6667777663 6788774333
No 296
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=76.86 E-value=20 Score=33.45 Aligned_cols=47 Identities=19% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602 145 TAERKLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLP 197 (239)
Q Consensus 145 ~eER~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~P 197 (239)
.+.+.+.++.+++.+ ++||++ +++...+ .+.++.++++|+|++.+.-
T Consensus 163 f~~~~~~i~~l~~~~---~vPVivK~~g~g~s---~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 163 FRGWLERIEELVKAL---SVPVIVKEVGFGIS---RETAKRLADAGVKAIDVAG 210 (326)
T ss_pred HHHHHHHHHHHHHhc---CCCEEEEecCCCCC---HHHHHHHHHcCCCEEEECC
Confidence 344567788888876 589999 3333222 5778888999999999864
No 297
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=76.75 E-value=28 Score=27.83 Aligned_cols=89 Identities=15% Similarity=-0.041 Sum_probs=52.6
Q ss_pred CCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--C
Q psy9602 128 IIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA--S 205 (239)
Q Consensus 128 g~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~--s 205 (239)
.+++.+.+..+-. .++-.++++.+.+.+ . +.|+++.+......+... +.+.|+|.+.+.+...-... .
T Consensus 85 ~d~v~l~~~~~~~----~~~~~~~~~~i~~~~-~-~~~v~~~~~~~~~~~~~~----~~~~g~d~i~~~~~~~~~~~~~~ 154 (200)
T cd04722 85 ADGVEIHGAVGYL----AREDLELIRELREAV-P-DVKVVVKLSPTGELAAAA----AEEAGVDEVGLGNGGGGGGGRDA 154 (200)
T ss_pred CCEEEEeccCCcH----HHHHHHHHHHHHHhc-C-CceEEEEECCCCccchhh----HHHcCCCEEEEcCCcCCCCCccC
Confidence 3445566555432 455667777777766 3 589999887654322211 67889999999875432210 1
Q ss_pred HHHHHHHHHHHHhhCCCCcEEE
Q psy9602 206 VEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 206 ~e~iv~yf~~VaeatpdLPIiL 227 (239)
......++..+.... ++||+.
T Consensus 155 ~~~~~~~~~~~~~~~-~~pi~~ 175 (200)
T cd04722 155 VPIADLLLILAKRGS-KVPVIA 175 (200)
T ss_pred chhHHHHHHHHHhcC-CCCEEE
Confidence 111234555666655 788775
No 298
>PRK12999 pyruvate carboxylase; Reviewed
Probab=76.75 E-value=42 Score=36.90 Aligned_cols=99 Identities=14% Similarity=0.025 Sum_probs=67.4
Q ss_pred HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecC-------C--CCHHHHHHHHHHHHhCCC
Q psy9602 121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIG-------G--TCFQEVVELAKHAESLNV 190 (239)
Q Consensus 121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg-------~--~St~eAIelar~A~~aGA 190 (239)
++...+.|.+++ ++ ..|++-+..+..-..+...+. ..-+.++.. . .+.+-.+++++.++++||
T Consensus 633 i~~a~~~Gid~~rif------d~lnd~~~~~~~i~~vk~~g~-~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga 705 (1146)
T PRK12999 633 VREAAAAGIDVFRIF------DSLNWVENMRVAIDAVRETGK-IAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGA 705 (1146)
T ss_pred HHHHHHcCCCEEEEe------ccCChHHHHHHHHHHHHHcCC-eEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 455667777766 55 366664444433333333322 233444443 1 378888999999999999
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
|.+.+-...... ++.++.+.++.|-++. ++||-++-
T Consensus 706 ~~i~ikDt~G~l--~P~~~~~lv~~lk~~~-~ipi~~H~ 741 (1146)
T PRK12999 706 HILAIKDMAGLL--KPAAAYELVSALKEEV-DLPIHLHT 741 (1146)
T ss_pred CEEEECCccCCC--CHHHHHHHHHHHHHHc-CCeEEEEe
Confidence 999888766532 7899999999999999 89987653
No 299
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=76.69 E-value=15 Score=34.89 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=54.0
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCC--CEEEECC-------CCCCCCCCHHHHHH
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNV--HAVLCLP-------ELFFTPASVEDLVD 211 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGA--daVlV~P-------P~y~~~~s~e~iv~ 211 (239)
...|.+|-.+.++.+++.+ .+|+|+--++.+.++.++..+.|.++|+ .++++-= +.|..+ +.+...+
T Consensus 222 ~~~~~~~~~~~f~~~~~a~---~~P~vvlsgG~~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~~~~~~-~~~~~~~ 297 (340)
T PRK12858 222 EAYTQEEAFKLFREQSDAT---DLPFIFLSAGVSPELFRRTLEFACEAGADFSGVLCGRATWQDGIEPYAAE-GEEARRA 297 (340)
T ss_pred ccccHHHHHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHHHHHcCCCccchhhhHHHHhhhhccccCC-CHHHHHH
Confidence 3457787778888888765 4788885555588999999999999999 8998742 345555 7777877
Q ss_pred HHHHH
Q psy9602 212 YLRDV 216 (239)
Q Consensus 212 yf~~V 216 (239)
++++.
T Consensus 298 ~l~~~ 302 (340)
T PRK12858 298 WLNTE 302 (340)
T ss_pred HHHHH
Confidence 76554
No 300
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=76.60 E-value=5.3 Score=36.43 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 177 EVVELAKHAESLNVHAVLCLP-ELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 177 eAIelar~A~~aGAdaVlV~P-P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
+..++++.+++.||+++.|+. |.||.. +. ++++.+.+.+ ++||+--|+
T Consensus 62 d~~~~A~~y~~~GA~aISVlTe~~~F~G-s~----~~l~~v~~~v-~~PvL~KDF 110 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLTDQSYFGG-SL----EDLKSVSSEL-KIPVLRKDF 110 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEcCCCcCCC-CH----HHHHHHHHhc-CCCEEeccc
Confidence 677999999999999999888 778887 54 5667788888 899987765
No 301
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=76.60 E-value=39 Score=28.87 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
..+++.+.+.+...+..+++-. ...+....++.++...+.++|++++.|.. .+.+....+.+.+ . ++|++
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~------~~~~~~~~~~~~~-~-~iPvV 86 (275)
T cd06320 15 RSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPIS------DVNLVPAVERAKK-K-GIPVV 86 (275)
T ss_pred HHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCC------hHHhHHHHHHHHH-C-CCeEE
Confidence 3444433333332234555532 34566667788888888899998887521 1222233455544 4 78999
Q ss_pred EEeCCC
Q psy9602 227 YYHIPM 232 (239)
Q Consensus 227 LYN~P~ 232 (239)
++|.+.
T Consensus 87 ~~~~~~ 92 (275)
T cd06320 87 NVNDKL 92 (275)
T ss_pred EECCCC
Confidence 998753
No 302
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=76.47 E-value=19 Score=31.56 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHH
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLR 214 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~ 214 (239)
.++++.+.+.+ ++|||+.=+-.+.+++.+..+. .|||++++.-+.|....+.+++..+.+
T Consensus 182 ~~~i~~i~~~~---~~pvia~GGi~~~~di~~~l~~---~g~dgv~vg~al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 182 LELIRAVSSAV---NIPVIASGGAGKPEHFVEAFEE---GGADAALAASIFHFGEYTIAELKEYLA 241 (243)
T ss_pred HHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHh---CCCCEEEEeHHHHcCCCCHHHHHHHHh
Confidence 45566666654 5899987666677776655442 599999999998865446666666554
No 303
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=76.47 E-value=14 Score=32.94 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=44.4
Q ss_pred eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602 134 NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCL 196 (239)
Q Consensus 134 ~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~ 196 (239)
.+..|+...-..+.-.++++.+.+ + ++||.+=+...-+.+.+++++.++++|+|++-+.
T Consensus 114 ~~g~G~~Ll~~p~~l~eiv~avr~-~---~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~ 172 (233)
T cd02911 114 EAGAGEALLKDPERLSEFIKALKE-T---GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVD 172 (233)
T ss_pred cCCcchHHcCCHHHHHHHHHHHHh-c---CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEEC
Confidence 445688888888888888888876 3 4788884432211789999999999999987664
No 304
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=76.30 E-value=60 Score=30.37 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=67.9
Q ss_pred hHHhhhcCCCCEEEeccc--------cC-CcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCC-----------------
Q psy9602 120 GITLRMAPIIDQMVNGTT--------GE-GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT----------------- 173 (239)
Q Consensus 120 ~v~~~~~gg~glvV~Gst--------GE-~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~----------------- 173 (239)
.++.+-++|.|+++.|.+ .+ ...+..++...-++.+++.+.....++++++.+.
T Consensus 38 ~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~ 117 (353)
T cd02930 38 FYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRA 117 (353)
T ss_pred HHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCC
Confidence 345556788888766532 11 1446778888888888887665456777776221
Q ss_pred ----------C-------HHHHHHHHHHHHhCCCCEEEECC-----------CCCCCCC---------CHHHHHHHHHHH
Q psy9602 174 ----------C-------FQEVVELAKHAESLNVHAVLCLP-----------ELFFTPA---------SVEDLVDYLRDV 216 (239)
Q Consensus 174 ----------S-------t~eAIelar~A~~aGAdaVlV~P-----------P~y~~~~---------s~e~iv~yf~~V 216 (239)
+ .++-++-|+.|+++|+|+|-|.. |.+.+-. ...-+.+.+++|
T Consensus 118 ~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aI 197 (353)
T cd02930 118 PINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAV 197 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHH
Confidence 1 23334567788889999999865 3332210 145677888888
Q ss_pred HhhCC-CCcEEE
Q psy9602 217 GEAAP-ATPLFY 227 (239)
Q Consensus 217 aeatp-dLPIiL 227 (239)
.++++ +.||.+
T Consensus 198 R~~vG~d~~v~i 209 (353)
T cd02930 198 RAAVGEDFIIIY 209 (353)
T ss_pred HHHcCCCceEEE
Confidence 88884 456653
No 305
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=76.30 E-value=5 Score=38.25 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=39.8
Q ss_pred EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC--CCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF--TPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~--~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.++|++..|.++ ++.|.+.|||.+.+.|-+.. ++....--.++++.+++.+ ++||+..
T Consensus 241 ~iIG~S~Hs~~e----~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~-~iPv~Ai 300 (347)
T PRK02615 241 KIIGRSTTNPEE----MAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA-PIPWFAI 300 (347)
T ss_pred CEEEEecCCHHH----HHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEE
Confidence 357888887554 46777889999999975442 2211122368888998888 7998754
No 306
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.25 E-value=31 Score=29.33 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=31.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+..++......+.++..+..+...+.++|++++.++. ++ +. ++.+.+ . ++|+++.|..
T Consensus 32 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~-----~~-~~---~~~l~~-~-~ipvV~~~~~ 89 (268)
T cd06277 32 GYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGI-----ST-EY---IKEIKE-L-GIPFVLVDHY 89 (268)
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCC-----Ch-HH---HHHHhh-c-CCCEEEEccC
Confidence 3455555444444444455555566777888776532 11 12 444433 3 5777777753
No 307
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=76.19 E-value=30 Score=32.08 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=62.7
Q ss_pred HhhhcCCCCEEEeccccCCcCCC-HHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 122 TLRMAPIIDQMVNGTTGEGVSMT-TAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 122 ~~~~~gg~glvV~GstGE~~sLT-~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
+...+-..-+++.-+-|+...+. .+.-..+++.+++...- .+||.++.-+.+ ++.++.|.+.|++.||+=-...
T Consensus 36 ~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~-~vPV~lHLDH~~----~~~i~~ai~~GftSVm~d~S~l 110 (293)
T PRK07315 36 RAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGI-TVPVAIHLDHGH----YEDALECIEVGYTSIMFDGSHL 110 (293)
T ss_pred HHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC-CCcEEEECCCCC----HHHHHHHHHcCCCEEEEcCCCC
Confidence 33344455677777777777777 67778888888887643 689999998763 5577788899999999986442
Q ss_pred CCCCCHHHHHHHHHHHHh
Q psy9602 201 FTPASVEDLVDYLRDVGE 218 (239)
Q Consensus 201 ~~~~s~e~iv~yf~~Vae 218 (239)
+.++.++.-+.+.+
T Consensus 111 ----~~eEni~~t~~v~~ 124 (293)
T PRK07315 111 ----PVEENLKLAKEVVE 124 (293)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 55666666555554
No 308
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=76.18 E-value=51 Score=28.68 Aligned_cols=97 Identities=18% Similarity=0.084 Sum_probs=62.7
Q ss_pred EEEeccccCCc--CCCHHHHHHHHHHHHHHh---------------------cCCCceEEEecCC----CCHHHHHHHHH
Q psy9602 131 QMVNGTTGEGV--SMTTAERKLNLEAWMTEA---------------------KTHGFTVMVQIGG----TCFQEVVELAK 183 (239)
Q Consensus 131 lvV~GstGE~~--sLT~eER~~li~~vve~~---------------------~G~rvpVIaGVg~----~St~eAIelar 183 (239)
++.+-+..|+- ..+.++|.++++.+++.. .+ +..||+..-. .+.++..++.+
T Consensus 59 I~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~~~~~~~~~~~~~~-~~kiI~S~H~f~~tp~~~~l~~~~~ 137 (225)
T cd00502 59 IFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDSALLEELINSRKKG-NTKIIGSYHDFSGTPSDEELVSRLE 137 (225)
T ss_pred EEEEcccccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHHHhC-CCEEEEEeccCCCCcCHHHHHHHHH
Confidence 45555655554 567788888877776542 24 6788876532 24588889999
Q ss_pred HHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhh--CCCCcEEEEeCCC
Q psy9602 184 HAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEA--APATPLFYYHIPM 232 (239)
Q Consensus 184 ~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaea--tpdLPIiLYN~P~ 232 (239)
.+.+.|||.+=+..... +.++..+.++..... .++.|++.|+.-.
T Consensus 138 ~~~~~gadivKla~~~~----~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~ 184 (225)
T cd00502 138 KMAALGADIVKIAVMAN----SIEDNLRLLKFTRQVKNLYDIPLIAINMGE 184 (225)
T ss_pred HHHHhCCCEEEEEecCC----CHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 99999999887775432 334444444433332 2257999998743
No 309
>PRK06801 hypothetical protein; Provisional
Probab=75.97 E-value=20 Score=33.23 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=52.7
Q ss_pred eEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 165 TVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 165 pVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
--+..+...+.+.+...++.|++.++..++-..|...+..+.+.+..+.+.+++.+ +.||.|+-.
T Consensus 18 yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~-~vpV~lHlD 82 (286)
T PRK06801 18 YALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARH-DIPVVLNLD 82 (286)
T ss_pred ceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHC-CCCEEEECC
Confidence 33445667788899999999999999988888887655436688999999999999 899998754
No 310
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=75.87 E-value=38 Score=31.51 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=60.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCEEEECCC---CC---C----CCC-CHH
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHAVLCLPE---LF---F----TPA-SVE 207 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAdaVlV~PP---~y---~----~~~-s~e 207 (239)
-.||.+|....++.++..+ .+||++=+ |-.+..++.+.++...++|+.++.+--- .- . +.. +.+
T Consensus 56 g~l~~~e~~~~~~~I~~~~---~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~e 132 (290)
T TIGR02321 56 NILSMSTHLEMMRAIASTV---SIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIE 132 (290)
T ss_pred ccCCHHHHHHHHHHHHhcc---CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHH
Confidence 4689999999999999987 58999944 2223447888899999999999999442 11 1 222 778
Q ss_pred HHHHHHHHHHhhCCCCcEEE
Q psy9602 208 DLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 208 ~iv~yf~~VaeatpdLPIiL 227 (239)
+...-.+++.++..+-+++|
T Consensus 133 e~~~kI~Aa~~a~~~~d~~I 152 (290)
T TIGR02321 133 EFQGKIAAATAARADRDFVV 152 (290)
T ss_pred HHHHHHHHHHHhCCCCCEEE
Confidence 88888888877643445554
No 311
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=75.85 E-value=20 Score=33.17 Aligned_cols=74 Identities=9% Similarity=-0.068 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
..++..+++.+ ++|||+.=+-.+-++ +..|..+|||+|++-..+.... +..+-+.|++..-....-..++.
T Consensus 150 ~~ll~~v~~~~---~iPviaaGGI~~~~~----~~~al~~GA~gV~iGt~f~~t~--Es~~~~~~k~~l~~~~~~dt~~t 220 (307)
T TIGR03151 150 MALVPQVVDAV---SIPVIAAGGIADGRG----MAAAFALGAEAVQMGTRFLCAK--ECNVHPNYKEKVLKAKDRDTVVT 220 (307)
T ss_pred HHHHHHHHHHh---CCCEEEECCCCCHHH----HHHHHHcCCCEeecchHHhccc--ccCCCHHHHHHHHhCCCCCEEEE
Confidence 56777777765 579887333333333 3444458999999998665432 33466667765533325567776
Q ss_pred eCC
Q psy9602 229 HIP 231 (239)
Q Consensus 229 N~P 231 (239)
..+
T Consensus 221 ~~~ 223 (307)
T TIGR03151 221 GAS 223 (307)
T ss_pred ecC
Confidence 643
No 312
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.84 E-value=34 Score=29.39 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=51.1
Q ss_pred HhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602 122 TLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF 201 (239)
Q Consensus 122 ~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~ 201 (239)
+..++.+..+++.|+.++ ++++.... . +++.+.| ..+..+ +..|.+.|+|.+-+.|-.
T Consensus 78 ~~A~~~gAdgv~~p~~~~----------~~~~~~~~--~--~~~~i~G--~~t~~e----~~~A~~~Gadyv~~Fpt~-- 135 (187)
T PRK07455 78 EEAIAAGAQFCFTPHVDP----------ELIEAAVA--Q--DIPIIPG--ALTPTE----IVTAWQAGASCVKVFPVQ-- 135 (187)
T ss_pred HHHHHcCCCEEECCCCCH----------HHHHHHHH--c--CCCEEcC--cCCHHH----HHHHHHCCCCEEEECcCC--
Confidence 344667777887777662 23333222 2 4678888 455554 456677999999984421
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 202 TPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 202 ~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+ -.=.+|++.+....|++|++-
T Consensus 136 -~---~~G~~~l~~~~~~~~~ipvva 157 (187)
T PRK07455 136 -A---VGGADYIKSLQGPLGHIPLIP 157 (187)
T ss_pred -c---ccCHHHHHHHHhhCCCCcEEE
Confidence 1 112688999998887789873
No 313
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=75.78 E-value=45 Score=30.86 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=55.3
Q ss_pred CcCCCHHHHHHHHHHHHHHhcCCCceEEE----ecCCCCHHHHHHHHHHHHh-CCCCEEEECCCCCCCCCCHHHHHHHHH
Q psy9602 140 GVSMTTAERKLNLEAWMTEAKTHGFTVMV----QIGGTCFQEVVELAKHAES-LNVHAVLCLPELFFTPASVEDLVDYLR 214 (239)
Q Consensus 140 ~~sLT~eER~~li~~vve~~~G~rvpVIa----GVg~~St~eAIelar~A~~-aGAdaVlV~PP~y~~~~s~e~iv~yf~ 214 (239)
-..+|.||-..-.+.+..-+. +..||+ |....|.+++++.+....+ .|||+|-+-- . .++.+..+
T Consensus 56 T~~vtld~mi~h~~aV~Rga~--~~~vv~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEG-----g---~~~~~~i~ 125 (261)
T PF02548_consen 56 TLPVTLDEMIYHTKAVRRGAP--NAFVVADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEG-----G---AEIAETIK 125 (261)
T ss_dssp STT--HHHHHHHHHHHHHH-T--SSEEEEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEB-----S---GGGHHHHH
T ss_pred CcCcCHHHHHHHHHHHHhcCC--CceEEecCCcccccCCHHHHHHHHHHHHHhcCCCEEEecc-----c---hhHHHHHH
Confidence 457899999999999998876 456666 3444699999999988877 9999999883 1 35778888
Q ss_pred HHHhhCCCCcEEEE
Q psy9602 215 DVGEAAPATPLFYY 228 (239)
Q Consensus 215 ~VaeatpdLPIiLY 228 (239)
.|.++ ++||+=+
T Consensus 126 ~l~~~--GIPV~gH 137 (261)
T PF02548_consen 126 ALVDA--GIPVMGH 137 (261)
T ss_dssp HHHHT--T--EEEE
T ss_pred HHHHC--CCcEEEE
Confidence 89886 7999854
No 314
>KOG2335|consensus
Probab=75.55 E-value=18 Score=34.92 Aligned_cols=93 Identities=16% Similarity=0.051 Sum_probs=63.6
Q ss_pred EEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec-CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC--CCHHH
Q psy9602 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI-GGTCFQEVVELAKHAESLNVHAVLCLPELFFTP--ASVED 208 (239)
Q Consensus 132 vV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV-g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~--~s~e~ 208 (239)
.--|..|=+..+..|=-.++++.+...+ ++||-+=+ ...+.++++++++..+++|++-+-|--=--... .++-.
T Consensus 113 a~~g~yGa~L~~~~eLv~e~V~~v~~~l---~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pa 189 (358)
T KOG2335|consen 113 AKRGGYGAFLMDNPELVGEMVSAVRANL---NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPA 189 (358)
T ss_pred HhcCCccceeccCHHHHHHHHHHHHhhc---CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCc
Confidence 3457777777777766666666666655 45655544 468999999999999999999998863110000 01222
Q ss_pred HHHHHHHHHhhCCCCcEEE
Q psy9602 209 LVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 209 iv~yf~~VaeatpdLPIiL 227 (239)
=++++++|-+..|++|++.
T Consensus 190 d~~~i~~v~~~~~~ipvia 208 (358)
T KOG2335|consen 190 DWEAIKAVRENVPDIPVIA 208 (358)
T ss_pred CHHHHHHHHHhCcCCcEEe
Confidence 3678889999987788875
No 315
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=75.51 E-value=14 Score=35.51 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=51.4
Q ss_pred HHHHHHhcCCCceEEEecCCCCHHH-----------------HHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHH
Q psy9602 153 EAWMTEAKTHGFTVMVQIGGTCFQE-----------------VVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRD 215 (239)
Q Consensus 153 ~~vve~~~G~rvpVIaGVg~~St~e-----------------AIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~ 215 (239)
+.+++.++..++|+=+||.+.|++. |++.++.++++|.+-+.+.-=. . +...+++-|+.
T Consensus 113 ~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~---S-dv~~~v~aYr~ 188 (361)
T COG0821 113 REVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKA---S-DVQLMVAAYRL 188 (361)
T ss_pred HHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc---C-CHHHHHHHHHH
Confidence 3344444433789999999988653 6778999999999988887321 2 67889999999
Q ss_pred HHhhCCCCcE
Q psy9602 216 VGEAAPATPL 225 (239)
Q Consensus 216 VaeatpdLPI 225 (239)
++..+ |.|+
T Consensus 189 lA~~~-dyPL 197 (361)
T COG0821 189 LAKRC-DYPL 197 (361)
T ss_pred HHHhc-CCCc
Confidence 99999 7554
No 316
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=75.49 E-value=15 Score=38.04 Aligned_cols=83 Identities=10% Similarity=0.044 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHHhcC---CCceEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC----CHHHH
Q psy9602 144 TTAERKLNLEAWMTEAKT---HGFTVMVQIG-------GTCFQEVVELAKHAESLNVHAVLCLPELFFTPA----SVEDL 209 (239)
Q Consensus 144 T~eER~~li~~vve~~~G---~rvpVIaGVg-------~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~----s~e~i 209 (239)
|.|.|.+++..+++.+.. .+.||.+=++ +.+.++++++++..++.|+|.+-|.-+.+.... ...-.
T Consensus 596 slenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~ 675 (765)
T PRK08255 596 SLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQ 675 (765)
T ss_pred CHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCcccc
Confidence 567777666666655443 1456766443 346789999999999999999999743322110 00011
Q ss_pred HHHHHHHHhhCCCCcEEE
Q psy9602 210 VDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 210 v~yf~~VaeatpdLPIiL 227 (239)
..+-+.|-+.+ ++||+.
T Consensus 676 ~~~~~~ik~~~-~~pv~~ 692 (765)
T PRK08255 676 TPFADRIRNEA-GIATIA 692 (765)
T ss_pred HHHHHHHHHHc-CCEEEE
Confidence 23446666777 789775
No 317
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=75.11 E-value=17 Score=33.68 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=51.8
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
|......+.+.+...++.|++.+.-.++-..|...+....+.+..+.+.+++.+ +.||.|+-.-
T Consensus 20 V~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~-~VPV~lHLDH 83 (284)
T PRK09195 20 VPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQY-HHPLALHLDH 83 (284)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHC-CCCEEEECCC
Confidence 356667788888899999999999999888886544335678999999999999 8999997543
No 318
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=74.91 E-value=15 Score=34.31 Aligned_cols=66 Identities=24% Similarity=0.251 Sum_probs=53.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC--CCC------CC-C--CCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP--ELF------FT-P--ASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P--P~y------~~-~--~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
..|+++++.+.+.++..+-|+.++++|+|+|-|-- |.. +. . .+.+-+.+..+++.+++ +.||.+.-
T Consensus 64 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v-~~pVsvKi 140 (333)
T PRK11815 64 EHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV-SIPVTVKH 140 (333)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc-CCceEEEE
Confidence 67999999999999999999999999999997653 221 01 0 16778888899998888 79998854
No 319
>PLN02979 glycolate oxidase
Probab=74.91 E-value=15 Score=35.41 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=57.7
Q ss_pred CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC--
Q psy9602 127 PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA-- 204 (239)
Q Consensus 127 gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~-- 204 (239)
|+.+++|.|+.|-...-... =..++..+++.+++ ++|||+.=|=.+-.+++ .|..+|||++++--|+.|...
T Consensus 244 Gvd~I~VsnhGGrqld~~p~-t~~~L~ei~~~~~~-~~~Vi~dGGIr~G~Di~----KALALGAdaV~iGrp~L~~la~~ 317 (366)
T PLN02979 244 GAAGIIVSNHGARQLDYVPA-TISALEEVVKATQG-RIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVFSLAAE 317 (366)
T ss_pred CCCEEEECCCCcCCCCCchh-HHHHHHHHHHHhCC-CCeEEEeCCcCcHHHHH----HHHHcCCCEEEEcHHHHHHHHhc
Confidence 44567888888765332221 14455556666777 89999844433333333 356789999999999875432
Q ss_pred CHHHHHHHHHHHHhhC
Q psy9602 205 SVEDLVDYLRDVGEAA 220 (239)
Q Consensus 205 s~e~iv~yf~~Vaeat 220 (239)
.++++...++.+.+..
T Consensus 318 G~~Gv~~~l~~l~~El 333 (366)
T PLN02979 318 GEAGVRKVLQMLRDEF 333 (366)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7788888888776653
No 320
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=74.84 E-value=15 Score=34.18 Aligned_cols=66 Identities=23% Similarity=0.054 Sum_probs=53.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC--CC-----C-C----CCCCHHHHHHHHHHHHhhCC-CCcEEEEe
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP--EL-----F-F----TPASVEDLVDYLRDVGEAAP-ATPLFYYH 229 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P--P~-----y-~----~~~s~e~iv~yf~~Vaeatp-dLPIiLYN 229 (239)
..|+++++.+++.++..+.|+.+++.|+|+|=+-- |. + . .. +++-+.+.++++.+++| ++||.+=-
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~-~~~~~~eiv~avr~~~~~~~pVsvKi 140 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLK-DPELIYQGAKAMREAVPAHLPVTVKV 140 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhc-CHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 47999999999999999999999999999998753 32 1 1 12 77889999999999885 58887643
No 321
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=74.72 E-value=23 Score=32.51 Aligned_cols=52 Identities=12% Similarity=-0.075 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC-CC
Q psy9602 147 ERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF-TP 203 (239)
Q Consensus 147 ER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~-~~ 203 (239)
.-.+.++.+.+.+++ ++|||..=+=.+-++++++.. +|||+|++..-.++ .|
T Consensus 228 ~al~~v~~~~~~~~~-~ipIig~GGI~s~~da~e~l~----aGA~~Vqv~ta~~~~gp 280 (294)
T cd04741 228 LALGNVRTFRRLLPS-EIQIIGVGGVLDGRGAFRMRL----AGASAVQVGTALGKEGP 280 (294)
T ss_pred HHHHHHHHHHHhcCC-CCCEEEeCCCCCHHHHHHHHH----cCCCceeEchhhhhcCc
Confidence 344566777777765 689887666778888888874 69999999998775 44
No 322
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=74.72 E-value=19 Score=32.15 Aligned_cols=50 Identities=22% Similarity=0.158 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEECC--CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 175 FQEVVELAKHAESLNVHAVLCLP--ELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 175 t~eAIelar~A~~aGAdaVlV~P--P~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
-.+.+++++.++++|++.+++.. ...... .--+++++.+.+.+ ++||+.-
T Consensus 154 ~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~---g~~~~~~~~i~~~~-~ipvia~ 205 (254)
T TIGR00735 154 GLDAVEWAKEVEKLGAGEILLTSMDKDGTKS---GYDLELTKAVSEAV-KIPVIAS 205 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCcCcccCCC---CCCHHHHHHHHHhC-CCCEEEe
Confidence 46778999999999999999943 322222 11257788899888 7998864
No 323
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=74.66 E-value=7.7 Score=35.70 Aligned_cols=79 Identities=20% Similarity=0.138 Sum_probs=51.2
Q ss_pred hhcCCCC-EEEe-ccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE--ecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 124 RMAPIID-QMVN-GTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV--QIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 124 ~~~gg~g-lvV~-GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa--GVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
..+.||. ++.+ .-.|-+.-+...+-. +..++.. ++|||+ |+|..| .+-.|.++|+|+||+-...
T Consensus 147 Lee~GcaavMPl~aPIGSg~G~~n~~~l---~iiie~a---~VPviVDAGiG~pS------dAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 147 LEEAGCAAVMPLGAPIGSGLGLQNPYNL---EIIIEEA---DVPVIVDAGIGTPS------DAAQAMELGADAVLLNTAI 214 (262)
T ss_pred HHhcCceEeccccccccCCcCcCCHHHH---HHHHHhC---CCCEEEeCCCCChh------HHHHHHhcccceeehhhHh
Confidence 3566664 5644 456777777766554 4556665 589998 666544 3457889999999998766
Q ss_pred CCCCCCHHHHHHHHHH
Q psy9602 200 FFTPASVEDLVDYLRD 215 (239)
Q Consensus 200 y~~~~s~e~iv~yf~~ 215 (239)
--.. ++-.+-+-|+-
T Consensus 215 A~A~-DPv~MA~Af~~ 229 (262)
T COG2022 215 ARAK-DPVAMARAFAL 229 (262)
T ss_pred hccC-ChHHHHHHHHH
Confidence 5443 55555555543
No 324
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=74.47 E-value=15 Score=36.03 Aligned_cols=78 Identities=18% Similarity=0.117 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHH----HhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q psy9602 142 SMTTAERKLNLEAWMT----EAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVG 217 (239)
Q Consensus 142 sLT~eER~~li~~vve----~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Va 217 (239)
+.-.+||...+-.+++ .++. +.--.++|++. .+|.++.++.|.++|++++|+---.+ . =..+.|+++.
T Consensus 199 f~~~e~R~~~~m~~i~~aeaeTGe-kk~y~~NITa~-~~EM~rrae~a~elG~~~~midi~~~----G-~~a~q~lre~- 270 (429)
T COG1850 199 FNRFEERVAKIMEAIDKAEAETGE-KKMYAVNITAP-CEEMMRRAELAAELGANYVMIDIVVT----G-FTALQYLRED- 270 (429)
T ss_pred cccHHHHHHHHHHHHHHHHHhhCc-eEEEEeeccCC-HHHHHHHHHHHHHcCCCEEEEEEEec----c-cHHHHHHHhc-
Confidence 4456777665544443 4554 56677799998 99999999999999999999973222 1 2256677766
Q ss_pred hhCCCCcEEEE
Q psy9602 218 EAAPATPLFYY 228 (239)
Q Consensus 218 eatpdLPIiLY 228 (239)
+.. +++|..+
T Consensus 271 ~d~-gl~ihaH 280 (429)
T COG1850 271 EDI-GLAIHAH 280 (429)
T ss_pred ccC-CceEEec
Confidence 434 4555443
No 325
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=74.39 E-value=26 Score=32.89 Aligned_cols=108 Identities=13% Similarity=0.049 Sum_probs=66.8
Q ss_pred hhhcCCCCEEEeccccCCcC----------------------CCHHHHHHHHHHHHHHhcCCCceEEEecCCC-------
Q psy9602 123 LRMAPIIDQMVNGTTGEGVS----------------------MTTAERKLNLEAWMTEAKTHGFTVMVQIGGT------- 173 (239)
Q Consensus 123 ~~~~gg~glvV~GstGE~~s----------------------LT~eER~~li~~vve~~~G~rvpVIaGVg~~------- 173 (239)
...+.|.|.++.||..+-.. |+...-..+++.... ... ++||++.++.+
T Consensus 74 ~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~-~~~-~~~i~vsi~~~~~~~~~~ 151 (335)
T TIGR01036 74 ALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKR-ARY-KGPIGINIGKNKDTPSED 151 (335)
T ss_pred HHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhh-ccC-CCcEEEEEeCCCCCCccc
Confidence 33456778888877765311 112223333444333 222 57898888766
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE--CCCCCCC--C-CCHHHHHHHHHHHHhhCCC-------CcEEEEeCCCCc
Q psy9602 174 CFQEVVELAKHAESLNVHAVLC--LPELFFT--P-ASVEDLVDYLRDVGEAAPA-------TPLFYYHIPMFT 234 (239)
Q Consensus 174 St~eAIelar~A~~aGAdaVlV--~PP~y~~--~-~s~e~iv~yf~~Vaeatpd-------LPIiLYN~P~~T 234 (239)
+.+|-++.++.+.+ .||++-+ .-|+.-. . ..++.+.+..+.|.+.+ + +||++==-|..+
T Consensus 152 ~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~-~~~~~~~~~Pv~vKLsP~~~ 222 (335)
T TIGR01036 152 AKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQ-DGLRRVHRVPVLVKIAPDLT 222 (335)
T ss_pred CHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHH-HhhhhccCCceEEEeCCCCC
Confidence 56777777777766 4999988 4454311 1 16778888888887776 5 899887666543
No 326
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=74.33 E-value=56 Score=29.70 Aligned_cols=112 Identities=9% Similarity=0.012 Sum_probs=64.8
Q ss_pred ceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHH
Q psy9602 101 KWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVE 180 (239)
Q Consensus 101 ~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIe 180 (239)
.++.+..++.-.-.+.|..- ..-.|+.|+++. -|..||..++++.+.+. .+..|.-++.+++++-++
T Consensus 93 vlm~Y~N~i~~~G~e~f~~~--~~~aGvdGviip-------DLp~ee~~~~~~~~~~~----gl~~I~lvap~t~~eri~ 159 (258)
T PRK13111 93 VLMTYYNPIFQYGVERFAAD--AAEAGVDGLIIP-------DLPPEEAEELRAAAKKH----GLDLIFLVAPTTTDERLK 159 (258)
T ss_pred EEEecccHHhhcCHHHHHHH--HHHcCCcEEEEC-------CCCHHHHHHHHHHHHHc----CCcEEEEeCCCCCHHHHH
Confidence 36666555443322222111 122455677774 57889999998888764 467777777777666555
Q ss_pred HHHHHHhCCCCEEEECCCC-CCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 181 LAKHAESLNVHAVLCLPEL-FFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 181 lar~A~~aGAdaVlV~PP~-y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
.+... .-|.=.++-..+. ......++.+.++++.|.+.+ ++||++
T Consensus 160 ~i~~~-s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~v 205 (258)
T PRK13111 160 KIASH-ASGFVYYVSRAGVTGARSADAADLAELVARLKAHT-DLPVAV 205 (258)
T ss_pred HHHHh-CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEEE
Confidence 44333 2343332222221 121113467888999999988 899986
No 327
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=74.17 E-value=28 Score=32.37 Aligned_cols=88 Identities=7% Similarity=-0.021 Sum_probs=60.0
Q ss_pred HhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602 122 TLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF 201 (239)
Q Consensus 122 ~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~ 201 (239)
+...+-..-+++..+-|....+..+.-..+++.+++.. ++||.+..-+... .+.++.|.++|++.||+=-..+
T Consensus 36 ~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~---~vPV~lHLDH~~~---~e~i~~Ai~~GftSVM~DgS~l- 108 (283)
T PRK07998 36 NAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKM---DVPVSLHLDHGKT---FEDVKQAVRAGFTSVMIDGAAL- 108 (283)
T ss_pred HHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHC---CCCEEEECcCCCC---HHHHHHHHHcCCCEEEEeCCCC-
Confidence 33444555677777777777777777777777777764 6899999877654 4556677899999999965432
Q ss_pred CCCCHHHHHHHHHHHHhh
Q psy9602 202 TPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 202 ~~~s~e~iv~yf~~Vaea 219 (239)
+.++=++..+++.+.
T Consensus 109 ---~~eeNi~~T~~vve~ 123 (283)
T PRK07998 109 ---PFEENIAFTKEAVDF 123 (283)
T ss_pred ---CHHHHHHHHHHHHHH
Confidence 445555555555443
No 328
>cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase I is required for the ligation of Okazaki fragments during lagging-strand DNA synthesis and for base excision repair (BER). DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and C-terminal oligonucleotide/oligo
Probab=74.11 E-value=8 Score=34.00 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=52.5
Q ss_pred EeccccCC-cCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 133 VNGTTGEG-VSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 133 V~GstGE~-~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
++-..|+. ..++..||+++++.++....+ ++.++-.+...+.+++.++.+.|.+.|..|+|+=.|.
T Consensus 132 iL~l~g~~l~~~pl~eRr~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~EGiv~K~~~ 198 (219)
T cd07900 132 LLYLNGESLLKKPLRERRELLHSLFKEVPG-RFQFATSKDSEDTEEIQEFLEEAVKNNCEGLMVKTLD 198 (219)
T ss_pred EEEECCchhhcCCHHHHHHHHHHhcCCCCC-eEEEEEEEecCCHHHHHHHHHHHHHcCCceEEEecCC
Confidence 33344443 468999999999999876655 5666667777889999999999999999999998766
No 329
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=74.04 E-value=21 Score=32.93 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEE-------EecCCCC-----------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHH
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVM-------VQIGGTC-----------FQEVVELAKHAESLNVHAVLCLPELFFTPASVE 207 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVI-------aGVg~~S-----------t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e 207 (239)
.|..+.++.+.+. .+||+ -.+...+ .+++++.++..+++||+++++- ..
T Consensus 116 ~~~~~~i~~l~~~----gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE-----~v---- 182 (263)
T TIGR00222 116 EWLVETVQMLTER----GVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLE-----CV---- 182 (263)
T ss_pred HhHHHHHHHHHHC----CCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEc-----CC----
Q ss_pred HHHHHHHHHHhhCCCCcEE
Q psy9602 208 DLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 208 ~iv~yf~~VaeatpdLPIi 226 (239)
..+-.+.|.++. ++|++
T Consensus 183 -p~~~a~~It~~l-~iP~i 199 (263)
T TIGR00222 183 -PVELAAKITEAL-AIPVI 199 (263)
T ss_pred -cHHHHHHHHHhC-CCCEE
No 330
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=73.99 E-value=12 Score=36.31 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=57.3
Q ss_pred CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC--C
Q psy9602 127 PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP--A 204 (239)
Q Consensus 127 gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~--~ 204 (239)
|+.++.|.|+.|-...-... -..++..+++.+++ ++|||+.=|-.+-.+++ .|..+||++|++--|+.+.. .
T Consensus 266 Gvd~I~Vs~hGGr~~d~~~~-t~~~L~~i~~a~~~-~~~vi~dGGIr~g~Di~----KALaLGA~~V~iGr~~l~~la~~ 339 (381)
T PRK11197 266 GADGIVVSNHGGRQLDGVLS-SARALPAIADAVKG-DITILADSGIRNGLDVV----RMIALGADTVLLGRAFVYALAAA 339 (381)
T ss_pred CCCEEEECCCCCCCCCCccc-HHHHHHHHHHHhcC-CCeEEeeCCcCcHHHHH----HHHHcCcCceeEhHHHHHHHHhc
Confidence 44567788888764321111 13445555566666 79999844433333333 35678999999999997653 1
Q ss_pred CHHHHHHHHHHHHhhC
Q psy9602 205 SVEDLVDYLRDVGEAA 220 (239)
Q Consensus 205 s~e~iv~yf~~Vaeat 220 (239)
.++++..+++.+.+..
T Consensus 340 G~~gv~~~l~~l~~El 355 (381)
T PRK11197 340 GQAGVANLLDLIEKEM 355 (381)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 8899999998877654
No 331
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=73.89 E-value=6.3 Score=37.64 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHhh-CCCCcEEEEeC
Q psy9602 177 EVVELAKHAESLNVHAVLCLP-ELFFTPASVEDLVDYLRDVGEA-APATPLFYYHI 230 (239)
Q Consensus 177 eAIelar~A~~aGAdaVlV~P-P~y~~~~s~e~iv~yf~~Vaea-tpdLPIiLYN~ 230 (239)
+..++|+.+++.||+++.|+. |.||+- + ++|++.+.++ + ++||+-=||
T Consensus 140 dp~~iA~~Ye~~GA~aISVLTd~~~F~G-s----~e~L~~vr~~~v-~lPvLrKDF 189 (338)
T PLN02460 140 DPVEIAQAYEKGGAACLSVLTDEKYFQG-S----FENLEAIRNAGV-KCPLLCKEF 189 (338)
T ss_pred CHHHHHHHHHhCCCcEEEEecCcCcCCC-C----HHHHHHHHHcCC-CCCEeeccc
Confidence 678999999999999999988 788887 5 5667888887 8 899987665
No 332
>PRK09701 D-allose transporter subunit; Provisional
Probab=73.84 E-value=48 Score=29.64 Aligned_cols=81 Identities=17% Similarity=0.062 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEE--ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhC
Q psy9602 143 MTTAERKLNLEAWMTEAKTHGFTVMV--QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAA 220 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G~rvpVIa--GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeat 220 (239)
++..=+..+++.+.+.+...+.-++. +.+..+....++..+.+...++|++++.+... +.....+..+.+ .
T Consensus 34 ~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~------~~~~~~l~~~~~-~ 106 (311)
T PRK09701 34 LSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSS------VNLVMPVARAWK-K 106 (311)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh------HHHHHHHHHHHH-C
Confidence 44455566666665554432344443 34456778888999999999999999986431 222233444444 5
Q ss_pred CCCcEEEEeCC
Q psy9602 221 PATPLFYYHIP 231 (239)
Q Consensus 221 pdLPIiLYN~P 231 (239)
++|++++|.+
T Consensus 107 -giPvV~~~~~ 116 (311)
T PRK09701 107 -GIYLVNLDEK 116 (311)
T ss_pred -CCcEEEeCCC
Confidence 7999999965
No 333
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=73.78 E-value=45 Score=29.38 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCC--CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGG--TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL 225 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~--~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI 225 (239)
+..+++-+.+.++..+..+++..+. .+.+...+..+.+.+.++|++++.|.. . ..+...+..+ + . ++|+
T Consensus 14 ~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~---~---~~~~~~l~~~-~-~-~iPv 84 (295)
T TIGR02955 14 WLSINYGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVS---P---EALNHDLAQL-T-K-SIPV 84 (295)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC---h---hhhhHHHHHH-h-c-CCCE
Confidence 3444443433333224566665443 477788889999999999999998632 1 2233444544 3 3 6899
Q ss_pred EEEeCC
Q psy9602 226 FYYHIP 231 (239)
Q Consensus 226 iLYN~P 231 (239)
+++|..
T Consensus 85 V~~~~~ 90 (295)
T TIGR02955 85 FALVNQ 90 (295)
T ss_pred EEEecC
Confidence 988543
No 334
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=73.72 E-value=40 Score=28.49 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.++++-+.+.+...+.-++++.+..+.+...+..+.....++|++++.|.. . +++.+ ..+ . . ++|+++.
T Consensus 15 ~~~~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~---~-~~~~~----~~~-~-~-~iPvV~i 83 (265)
T cd06290 15 GRILKGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGGD---L-PEEEI----LAL-A-E-EIPVLAV 83 (265)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC---C-ChHHH----HHH-h-c-CCCEEEE
Confidence 445544444444335677777777788888888888888899999998643 1 22222 223 2 3 6899988
Q ss_pred eCC
Q psy9602 229 HIP 231 (239)
Q Consensus 229 N~P 231 (239)
+.+
T Consensus 84 ~~~ 86 (265)
T cd06290 84 GRR 86 (265)
T ss_pred CCC
Confidence 864
No 335
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=73.59 E-value=48 Score=31.40 Aligned_cols=112 Identities=7% Similarity=-0.006 Sum_probs=72.3
Q ss_pred ccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHH
Q psy9602 97 PKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQ 176 (239)
Q Consensus 97 ~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~ 176 (239)
.....|-+++.|+++-.+..|+.-... . |..+=.+.++.|||.+.+ ...+...+ +++++..-+.
T Consensus 30 ~~~l~~P~~inAM~t~in~~LA~~a~~-----~-----G~~~i~hK~~~E~~~sfv----rk~k~~~L--~v~~SvG~t~ 93 (321)
T TIGR01306 30 KHKFKLPVVPANMQTIIDEKLAEQLAE-----N-----GYFYIMHRFDEESRIPFI----KDMQERGL--FASISVGVKA 93 (321)
T ss_pred CcEecCcEEeeccchhhhHHHHHHHHH-----c-----CCEEEEecCCHHHHHHHH----Hhcccccc--EEEEEcCCCH
Confidence 345677788888877666666543221 1 333334557899988853 33332133 5566655667
Q ss_pred HHHHHHHHHHhCC--CCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 177 EVVELAKHAESLN--VHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 177 eAIelar~A~~aG--AdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
+.++.+....++| +|.+.+-+.+. ..+.+++..+.|.+..|..+|+.=
T Consensus 94 e~~~r~~~lv~a~~~~d~i~~D~ahg----~s~~~~~~i~~i~~~~p~~~vi~G 143 (321)
T TIGR01306 94 CEYEFVTQLAEEALTPEYITIDIAHG----HSNSVINMIKHIKTHLPDSFVIAG 143 (321)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCccC----chHHHHHHHHHHHHhCCCCEEEEe
Confidence 7778888888888 79998887665 446788888888888853335443
No 336
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=73.57 E-value=6.3 Score=29.93 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=23.3
Q ss_pred EEEecCCCCHHHHHH-HHHHHHhCCCCEEEEC
Q psy9602 166 VMVQIGGTCFQEVVE-LAKHAESLNVHAVLCL 196 (239)
Q Consensus 166 VIaGVg~~St~eAIe-lar~A~~aGAdaVlV~ 196 (239)
|+.+.+. +.++|++ +.++|+++||+||+=.
T Consensus 19 iv~~~~~-d~d~Al~eM~e~A~~lGAnAVVGv 49 (74)
T TIGR03884 19 IVSTESD-NVDEIVENLREKVKAKGGMGLIAF 49 (74)
T ss_pred EEEEecC-CHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4555555 8888886 6788999999999865
No 337
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=73.57 E-value=9.2 Score=31.29 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=37.4
Q ss_pred eEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCC--CCCCCCC--HHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 165 TVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPE--LFFTPAS--VEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 165 pVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP--~y~~~~s--~e~iv~yf~~VaeatpdLPIiLY 228 (239)
..++|++..+. +.++.+.+.|+|.+++.|= ...++ . ...-.++++.+.+.. +.||++-
T Consensus 95 ~~~~g~~~~t~----~~~~~~~~~g~d~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~pv~a~ 156 (196)
T cd00564 95 DLIIGVSTHSL----EEALRAEELGADYVGFGPVFPTPTKP-GAGPPLGLELLREIAELV-EIPVVAI 156 (196)
T ss_pred CCEEEeeCCCH----HHHHHHhhcCCCEEEECCccCCCCCC-CCCCCCCHHHHHHHHHhC-CCCEEEE
Confidence 55677777665 4456677889999998752 11111 1 233467778887766 7888764
No 338
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=73.52 E-value=6.4 Score=37.37 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhcC-CCceEEEec-----------------------------CCCCHHHHHHHHHHHHhCCCCEEEE
Q psy9602 146 AERKLNLEAWMTEAKT-HGFTVMVQI-----------------------------GGTCFQEVVELAKHAESLNVHAVLC 195 (239)
Q Consensus 146 eER~~li~~vve~~~G-~rvpVIaGV-----------------------------g~~St~eAIelar~A~~aGAdaVlV 195 (239)
+=|...|+...+..+- .+++||.=. --.+.++|++.+..=.+-|||-+||
T Consensus 165 DGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMV 244 (320)
T cd04824 165 DGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMV 244 (320)
T ss_pred ccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEE
Confidence 6677788888877543 367777521 1134678888888888889999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 196 LPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 196 ~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
=|-..| ++-.+.+.+.+|++||..||..+
T Consensus 245 KPal~Y--------LDIi~~~k~~~~~~PvaaYqVSG 273 (320)
T cd04824 245 KPGTPY--------LDIVREAKDKHPDLPLAVYHVSG 273 (320)
T ss_pred cCCchH--------HHHHHHHHHhccCCCEEEEEccH
Confidence 985432 45567778888899999999753
No 339
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=73.36 E-value=42 Score=28.22 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
..+.+.+.+++...+.-++......+.....++.+.....++|++++.++. .+ .. ..+.+ . . ++|+++.
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~--~~---~~---~~~~~-~-~-~ipvv~~ 83 (267)
T cd06284 15 SEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGS--LP---PT---ALTAL-A-K-LPPIVQA 83 (267)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCC--CC---HH---HHHHH-h-c-CCCEEEE
Confidence 344444443333323556665666677777788888888889998887653 11 11 22333 2 3 6888888
Q ss_pred eCC
Q psy9602 229 HIP 231 (239)
Q Consensus 229 N~P 231 (239)
+.+
T Consensus 84 ~~~ 86 (267)
T cd06284 84 CEY 86 (267)
T ss_pred ecc
Confidence 754
No 340
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=73.24 E-value=49 Score=29.43 Aligned_cols=77 Identities=8% Similarity=0.042 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCCHHHH--HHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEV--VELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT 223 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaGVg~~St~eA--Ielar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL 223 (239)
+.-.++++.+.+.. ++|+++-+.-+....- -++++.+.++|++++++..= ..|++.++.+.+.+. ++
T Consensus 62 ~~~~~~~~~vr~~~---~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl------~~ee~~~~~~~~~~~--g~ 130 (242)
T cd04724 62 KDVLELVKEIRKKN---TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDL------PPEEAEEFREAAKEY--GL 130 (242)
T ss_pred HHHHHHHHHHhhcC---CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCC------CHHHHHHHHHHHHHc--CC
Confidence 44555666655543 4676654443332222 45777888889998888531 235666666666554 67
Q ss_pred cEEEEeCCCC
Q psy9602 224 PLFYYHIPMF 233 (239)
Q Consensus 224 PIiLYN~P~~ 233 (239)
..++.=.|..
T Consensus 131 ~~i~~i~P~T 140 (242)
T cd04724 131 DLIFLVAPTT 140 (242)
T ss_pred cEEEEeCCCC
Confidence 6666666653
No 341
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=73.18 E-value=25 Score=31.85 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=48.8
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC-----------------CCHHHHHHHHHHHHhh-CCCCc--EE
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP-----------------ASVEDLVDYLRDVGEA-APATP--LF 226 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~-----------------~s~e~iv~yf~~Vaea-tpdLP--Ii 226 (239)
.+-.|..+.+.+++.++...+.|||.+=+--|+.-+. .+-+.+++..++|... + ++| +|
T Consensus 15 y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~-~~plv~m 93 (256)
T TIGR00262 15 FVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHP-NIPIGLL 93 (256)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 3356788999999999999999999999999983111 1446777888888765 4 677 45
Q ss_pred EEeCCC
Q psy9602 227 YYHIPM 232 (239)
Q Consensus 227 LYN~P~ 232 (239)
.|.||.
T Consensus 94 ~Y~Npi 99 (256)
T TIGR00262 94 TYYNLI 99 (256)
T ss_pred EeccHH
Confidence 566773
No 342
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=73.11 E-value=34 Score=30.18 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=36.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+..+++.....+.++..+..+...+.++|++++.|+....+ .... +.... ++|+++.|.+
T Consensus 86 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~-----~~~~---l~~~~-~iPvV~i~~~ 145 (327)
T PRK10423 86 GYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQP-----SREI---MQRYP-SVPTVMMDWA 145 (327)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh-----hHHH---HHhcC-CCCEEEECCc
Confidence 35555555555666666777777788999999987542111 1111 21223 6899998864
No 343
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=73.10 E-value=22 Score=33.03 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=51.0
Q ss_pred EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
-+..+...+.+.+...++.|++.++..++-..|...+..+.+.+..+.+.+++.+ +.||.|+-.
T Consensus 19 aV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~-~VPValHLD 82 (284)
T PRK12737 19 AVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKY-NIPLALHLD 82 (284)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHC-CCCEEEECC
Confidence 3445667788888999999999999999888886544335577888999999998 899998754
No 344
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=73.07 E-value=34 Score=31.79 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHH----HHHHHHhhC
Q psy9602 173 TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVD----YLRDVGEAA 220 (239)
Q Consensus 173 ~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~----yf~~Vaeat 220 (239)
..++..+++++...++|||++++..|..-.. +++...+ |.+.|.++.
T Consensus 183 ~~t~~~~~~~~~~~eaGad~i~i~d~~~~~l-sp~~f~ef~~P~~k~i~~~i 233 (346)
T PRK00115 183 KLADATIAYLNAQIEAGAQAVQIFDSWAGAL-SPADYREFVLPYMKRIVAEL 233 (346)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCccccC-CHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888889999999888843322 6666654 446777665
No 345
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=73.05 E-value=23 Score=31.80 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=47.6
Q ss_pred hcCCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602 125 MAPIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT 202 (239)
Q Consensus 125 ~~gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~ 202 (239)
.+.+.+ +++.+-+-++..--. -.++++.+.+.+ ++|||++=+-.+.++..++.+ +.|++++++.-+.+|.
T Consensus 162 ~~~g~~~ii~~~i~~~G~~~G~--d~~~i~~~~~~~---~ipvIasGGv~s~eD~~~l~~---~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 162 EALGAGEILLNSIDRDGTMKGY--DLELLKSFRNAL---KIPLIALGGAGSLDDIVEAIL---NLGADAAAAGSLFVFK 232 (258)
T ss_pred HHcCCCEEEEEccCCCCCcCCC--CHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHH---HCCCCEEEEcceeeeC
Confidence 344554 566655544433222 345566666654 589999888888888877653 4599999999998887
No 346
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=73.05 E-value=37 Score=30.04 Aligned_cols=72 Identities=10% Similarity=0.094 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 150 LNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 150 ~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
++++.+.+.+...+..+++.....+.+...+..+...+.++|++++.++.. + +.+. ..+.+ . ++|+++.|
T Consensus 76 ~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~----~-~~~~---~~l~~-~-~iPvV~~~ 145 (329)
T TIGR01481 76 ELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGTI----T-EKLR---EEFSR-S-PVPVVLAG 145 (329)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC----C-hHHH---HHHHh-c-CCCEEEEe
Confidence 344444333332234555555555666666777777778889888876431 2 2222 23333 4 68888887
Q ss_pred CC
Q psy9602 230 IP 231 (239)
Q Consensus 230 ~P 231 (239)
.+
T Consensus 146 ~~ 147 (329)
T TIGR01481 146 TV 147 (329)
T ss_pred cC
Confidence 53
No 347
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=73.01 E-value=37 Score=28.67 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=29.4
Q ss_pred ceEEEecCCCCHHHHHHHHHHH-HhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 164 FTVMVQIGGTCFQEVVELAKHA-ESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 164 vpVIaGVg~~St~eAIelar~A-~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
..+++..+. +..+..+.+... ...++|++++.++.. + ..+ ++.+.+ . ++|++++|.+.
T Consensus 35 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~dgiii~~~~~----~-~~~---~~~~~~-~-~ipvV~~~~~~ 93 (270)
T cd06294 35 YDISLATGK-NEEELLEEVKKMIQQKRVDGFILLYSRE----D-DPI---IDYLKE-E-KFPFVVIGKPE 93 (270)
T ss_pred CEEEEecCC-CcHHHHHHHHHHHHHcCcCEEEEecCcC----C-cHH---HHHHHh-c-CCCEEEECCCC
Confidence 455554333 333334444443 344588888876421 1 122 333433 3 68888887653
No 348
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=72.99 E-value=34 Score=31.76 Aligned_cols=89 Identities=9% Similarity=0.006 Sum_probs=62.3
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
++..-+-..-+++.-+-|+...+..+....+++.+++.. ++||.+..-+... .+.++.|.++|++.||+=...+
T Consensus 35 i~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~---~VPV~lHLDHg~~---~e~i~~Ai~~GftSVM~DgS~l 108 (284)
T PRK09195 35 VETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQY---HHPLALHLDHHEK---FDDIAQKVRSGVRSVMIDGSHL 108 (284)
T ss_pred HHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHC---CCCEEEECCCCCC---HHHHHHHHHcCCCEEEeCCCCC
Confidence 334444555677777777777777777777777777764 6999999877654 5778889999999999986542
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q psy9602 201 FTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 201 ~~~~s~e~iv~yf~~Vaea 219 (239)
+.++=++.-+.+.+-
T Consensus 109 ----~~eeNi~~T~~vv~~ 123 (284)
T PRK09195 109 ----PFAQNISLVKEVVDF 123 (284)
T ss_pred ----CHHHHHHHHHHHHHH
Confidence 345555555555443
No 349
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.98 E-value=30 Score=29.41 Aligned_cols=74 Identities=9% Similarity=0.076 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
...+++-+.+.+...+.-+++..+..+.+.-.+..+.....++|++++.+.. . +++. +..+.. . +.|+++
T Consensus 14 ~~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~---~-~~~~----~~~~~~-~-~~pvV~ 83 (269)
T cd06293 14 FAELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTNR---P-DDGA----LAKLIN-S-YGNIVL 83 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC---C-CHHH----HHHHHh-c-CCCEEE
Confidence 3445555554444434566666666677778888899999999999998632 2 2232 333333 3 689999
Q ss_pred EeCC
Q psy9602 228 YHIP 231 (239)
Q Consensus 228 YN~P 231 (239)
.|..
T Consensus 84 i~~~ 87 (269)
T cd06293 84 VDED 87 (269)
T ss_pred ECCC
Confidence 9964
No 350
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=72.80 E-value=7.6 Score=37.42 Aligned_cols=60 Identities=15% Similarity=0.312 Sum_probs=44.3
Q ss_pred CceEEEecCCCCHHH----------------HHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 163 GFTVMVQIGGTCFQE----------------VVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 163 rvpVIaGVg~~St~e----------------AIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
++|+=+||.+-|++. |++.++.+++.|++-+.+.-= .. +....++.|+.+++.+ |.|+-
T Consensus 131 ~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlK---sS-dv~~~i~ayr~la~~~-dyPLH 205 (359)
T PF04551_consen 131 GIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISLK---SS-DVPETIEAYRLLAERM-DYPLH 205 (359)
T ss_dssp T-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEE---BS-SHHHHHHHHHHHHHH---S-EE
T ss_pred CCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEE---eC-ChHHHHHHHHHHHHhc-CCCeE
Confidence 689999998888543 678899999999999998831 22 6788899999999999 87765
Q ss_pred E
Q psy9602 227 Y 227 (239)
Q Consensus 227 L 227 (239)
|
T Consensus 206 L 206 (359)
T PF04551_consen 206 L 206 (359)
T ss_dssp E
T ss_pred E
Confidence 5
No 351
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=72.45 E-value=18 Score=31.28 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=45.8
Q ss_pred hcCCC-CEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 125 MAPII-DQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 125 ~~gg~-glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
.+.+. .+++...+.++..... -.++++.+.+.+ ++||+++=+-.+.++..++. +.|||++++-.-.+
T Consensus 155 ~~~g~~~ii~~~~~~~g~~~g~--~~~~i~~i~~~~---~ipvia~GGi~~~~di~~~~----~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 155 EELGLEGIIYTDISRDGTLSGP--NFELTKELVKAV---NVPVIASGGVSSIDDLIALK----KLGVYGVIVGKALY 222 (230)
T ss_pred HhCCCCEEEEEeecCCCCcCCC--CHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHH----HCCCCEEEEeHHHH
Confidence 34444 4666766666654432 367777777764 58999998888888876543 47999999975443
No 352
>PRK08227 autoinducer 2 aldolase; Validated
Probab=72.27 E-value=46 Score=30.64 Aligned_cols=93 Identities=10% Similarity=0.031 Sum_probs=55.6
Q ss_pred hHHhhhcCCCC-EE---EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC------CCHHHHHHHHHHHHhCC
Q psy9602 120 GITLRMAPIID-QM---VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG------TCFQEVVELAKHAESLN 189 (239)
Q Consensus 120 ~v~~~~~gg~g-lv---V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~------~St~eAIelar~A~~aG 189 (239)
+++..+.-|++ +. -.|+..| .|-.+-+..+++.+....+|+++ +.. ++.+-...-++.|.++|
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~E------~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELG 171 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEYE------HQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMG 171 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHH------HHHHHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHc
Confidence 46666665543 32 3443322 22332233344455444899998 432 23444555788899999
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 190 VHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 190 AdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
||-|=+.+| . +-|+.+.+++ ..||++===|
T Consensus 172 ADiVK~~y~--------~---~~f~~vv~a~-~vPVviaGG~ 201 (264)
T PRK08227 172 AQIIKTYYV--------E---EGFERITAGC-PVPIVIAGGK 201 (264)
T ss_pred CCEEecCCC--------H---HHHHHHHHcC-CCcEEEeCCC
Confidence 999887643 1 5678888888 5999875444
No 353
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=71.95 E-value=16 Score=35.10 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=56.0
Q ss_pred cC-CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhC--CCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q psy9602 141 VS-MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESL--NVHAVLCLPELFFTPASVEDLVDYLRDVG 217 (239)
Q Consensus 141 ~s-LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~a--GAdaVlV~PP~y~~~~s~e~iv~yf~~Va 217 (239)
+. ++.|+|.+.++.+.....+ .+-|-+|+...+. +.++...++ |+|.+.+-..+.+ .+.+++..+.|-
T Consensus 75 Hk~~~~e~~~~~v~~~~~~~~~-~~~vsvG~~~~d~----er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir 145 (343)
T TIGR01305 75 HKHYSVDEWKAFATNSSPDCLQ-NVAVSSGSSDNDL----EKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVR 145 (343)
T ss_pred eeCCCHHHHHHHHHhhcccccc-eEEEEeccCHHHH----HHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHH
Confidence 44 8999999999887766555 5555555555444 444444454 6999999877754 466777777777
Q ss_pred hhCCCCcEEEEeC
Q psy9602 218 EAAPATPLFYYHI 230 (239)
Q Consensus 218 eatpdLPIiLYN~ 230 (239)
+..|+.+||-=|.
T Consensus 146 ~~~p~~~viaGNV 158 (343)
T TIGR01305 146 EAFPEHTIMAGNV 158 (343)
T ss_pred hhCCCCeEEEecc
Confidence 7887777776544
No 354
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=71.90 E-value=66 Score=29.72 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL 225 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI 225 (239)
.-..++++-+-+.+...+.-+++..+..+.+.-.+..+...+.++|++++.+.. ..+.... .+. .. ++|+
T Consensus 71 ~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~-----~~~~~~~---~l~-~~-~~P~ 140 (333)
T COG1609 71 PFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLGER-----PNDSLLE---LLA-AA-GIPV 140 (333)
T ss_pred chHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC-----CCHHHHH---HHH-hc-CCCE
Confidence 445555555555554446788888888889999999999999999999999821 1222332 233 33 6999
Q ss_pred EEEeCC
Q psy9602 226 FYYHIP 231 (239)
Q Consensus 226 iLYN~P 231 (239)
++.+-.
T Consensus 141 V~i~~~ 146 (333)
T COG1609 141 VVIDRS 146 (333)
T ss_pred EEEeCC
Confidence 999863
No 355
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=71.89 E-value=17 Score=35.01 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=57.7
Q ss_pred hc-CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Q psy9602 125 MA-PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP 203 (239)
Q Consensus 125 ~~-gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~ 203 (239)
++ |+.+++|.|+-|-...-.. ==..++..+++.+.+ ++|||+.=|=.+-.+++ .|..+||+++++--|+.|..
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~-~t~~~L~ei~~av~~-~~~vi~dGGIr~G~Dv~----KALALGA~aV~iGr~~l~~l 315 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVP-ATISALEEVVKATQG-RIPVFLDGGVRRGTDVF----KALALGASGIFIGRPVVFSL 315 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCch-hHHHHHHHHHHHhCC-CCeEEEeCCcCcHHHHH----HHHHcCCCEEEEcHHHHHHH
Confidence 44 4456789999886432221 124566666677777 89999844433333333 35668999999999997553
Q ss_pred C--CHHHHHHHHHHHHhh
Q psy9602 204 A--SVEDLVDYLRDVGEA 219 (239)
Q Consensus 204 ~--s~e~iv~yf~~Vaea 219 (239)
. .++++..+++.+.+.
T Consensus 316 ~~~G~~gv~~~l~~l~~e 333 (367)
T PLN02493 316 AAEGEAGVRKVLQMLRDE 333 (367)
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 2 678888777766554
No 356
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=71.63 E-value=21 Score=36.30 Aligned_cols=98 Identities=18% Similarity=0.119 Sum_probs=62.2
Q ss_pred hhcCCCCEEEeccccCCcCCCHHHHHHHHHH-----------HH-------HHhcCCCceEEEecCCCCHHHHHHHHHHH
Q psy9602 124 RMAPIIDQMVNGTTGEGVSMTTAERKLNLEA-----------WM-------TEAKTHGFTVMVQIGGTCFQEVVELAKHA 185 (239)
Q Consensus 124 ~~~gg~glvV~GstGE~~sLT~eER~~li~~-----------vv-------e~~~G~rvpVIaGVg~~St~eAIelar~A 185 (239)
.+..|.-+.+-|..|+.+.=..+|-.+-.+. .. ...+|.++.|.++++. .+.+..|
T Consensus 211 ~~~~G~~vilDg~~G~v~~~P~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~T~DG~~i~l~aNi~~------~~~~~~a 284 (575)
T PRK11177 211 QVKNGDYLILDAVNNQIYVNPTNEVIEELKAVQEQYASEKAELAKLKDLPAITLDGHQVEVCANIGT------VRDVEGA 284 (575)
T ss_pred hccCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCEEEEEEcCCC------HHHHHHH
Confidence 3455566778999999865444332221111 00 1122324556666654 3456778
Q ss_pred HhCCCCEEEECCCCC------CCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 186 ESLNVHAVLCLPELF------FTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 186 ~~aGAdaVlV~PP~y------~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
.+.|+++|=++=-=| -.| ++++-+..|+.++++.++.||++=
T Consensus 285 ~~~ga~GvGL~RtEfl~l~~~~~P-~eeeq~~~y~~i~~~~~~~~v~iR 332 (575)
T PRK11177 285 ERNGAEGVGLYRTEFLFMDRDALP-TEEEQFQAYKAVAEAMGSQAVIVR 332 (575)
T ss_pred HhCCCceehHhhchHhhhCCCCCC-CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 899999997654211 124 899999999999999988998874
No 357
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=71.57 E-value=46 Score=30.70 Aligned_cols=89 Identities=12% Similarity=-0.019 Sum_probs=61.0
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
++...+-..-+++..+-++.-.+..+....++..+++.. ++||.++.-+... .+.++.|.+.|++.||+=-...
T Consensus 35 i~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~---~vpv~lHlDH~~~---~e~i~~Al~~G~tsVm~d~s~~ 108 (281)
T PRK06806 35 IKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQA---KVPVAVHFDHGMT---FEKIKEALEIGFTSVMFDGSHL 108 (281)
T ss_pred HHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHC---CCCEEEECCCCCC---HHHHHHHHHcCCCEEEEcCCCC
Confidence 334444555677777777777777777666777666653 6999999887543 4577789999999999986543
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q psy9602 201 FTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 201 ~~~~s~e~iv~yf~~Vaea 219 (239)
+.++.++.-+.+.+-
T Consensus 109 ----~~~eni~~t~~v~~~ 123 (281)
T PRK06806 109 ----PLEENIQKTKEIVEL 123 (281)
T ss_pred ----CHHHHHHHHHHHHHH
Confidence 456665555544443
No 358
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.52 E-value=63 Score=27.45 Aligned_cols=76 Identities=22% Similarity=0.165 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEecC--CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIG--GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL 225 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg--~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI 225 (239)
...+++.+.+.+...+..+++... ..+.....+..+.....++|++++.+.. .+...+.++.+.+ . ++|+
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~------~~~~~~~l~~~~~-~-~ipv 85 (273)
T cd06310 14 WQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTD------AKALVPPLKEAKD-A-GIPV 85 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCC------hhhhHHHHHHHHH-C-CCCE
Confidence 344454444433332456665432 4577777888888888899999998532 2333455566554 4 7999
Q ss_pred EEEeCC
Q psy9602 226 FYYHIP 231 (239)
Q Consensus 226 iLYN~P 231 (239)
++.+.+
T Consensus 86 V~~~~~ 91 (273)
T cd06310 86 VLIDSG 91 (273)
T ss_pred EEecCC
Confidence 999875
No 359
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=71.50 E-value=34 Score=29.52 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
++...+.|..+++.. ..+...=..++-.++++.+.+.. + +|+++++. ..+.+..+.++|+|.+.+.+-.+
T Consensus 85 ~~~a~~aGad~I~~~-~~~~~~p~~~~~~~~i~~~~~~g-~--~~iiv~v~------t~~ea~~a~~~G~d~i~~~~~g~ 154 (219)
T cd04729 85 VDALAAAGADIIALD-ATDRPRPDGETLAELIKRIHEEY-N--CLLMADIS------TLEEALNAAKLGFDIIGTTLSGY 154 (219)
T ss_pred HHHHHHcCCCEEEEe-CCCCCCCCCcCHHHHHHHHHHHh-C--CeEEEECC------CHHHHHHHHHcCCCEEEccCccc
Q ss_pred CCCCCH---HHHHHHHHHHHhhCCCCcEEE
Q psy9602 201 FTPASV---EDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 201 ~~~~s~---e~iv~yf~~VaeatpdLPIiL 227 (239)
... .. ...+++++.+.+.+ ++||+.
T Consensus 155 t~~-~~~~~~~~~~~l~~i~~~~-~ipvia 182 (219)
T cd04729 155 TEE-TAKTEDPDFELLKELRKAL-GIPVIA 182 (219)
T ss_pred ccc-ccCCCCCCHHHHHHHHHhc-CCCEEE
No 360
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=71.47 E-value=65 Score=31.44 Aligned_cols=94 Identities=9% Similarity=-0.009 Sum_probs=55.1
Q ss_pred HHhhhcCCCCE-EEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC-C
Q psy9602 121 ITLRMAPIIDQ-MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP-E 198 (239)
Q Consensus 121 v~~~~~gg~gl-vV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P-P 198 (239)
+...++.+..+ .|-.+.| .+ +-..+.++.+.+... ++|||+|-.. + .+-++.+.++|||++-+.. |
T Consensus 229 ~~~L~~aG~d~I~vd~a~g--~~---~~~~~~i~~i~~~~~--~~~vi~G~v~-t----~~~a~~l~~aGad~i~vg~g~ 296 (450)
T TIGR01302 229 AEALVKAGVDVIVIDSSHG--HS---IYVIDSIKEIKKTYP--DLDIIAGNVA-T----AEQAKALIDAGADGLRVGIGP 296 (450)
T ss_pred HHHHHHhCCCEEEEECCCC--cH---hHHHHHHHHHHHhCC--CCCEEEEeCC-C----HHHHHHHHHhCCCEEEECCCC
Confidence 33446666654 4655554 22 335556666665543 5899996544 2 4556677778999998763 4
Q ss_pred CCCCC------C--CHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 199 LFFTP------A--SVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 199 ~y~~~------~--s~e~iv~yf~~VaeatpdLPIiL 227 (239)
-+... . .+-..+.....++... ++|||-
T Consensus 297 G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~-~vpvia 332 (450)
T TIGR01302 297 GSICTTRIVAGVGVPQITAVYDVAEYAAQS-GIPVIA 332 (450)
T ss_pred CcCCccceecCCCccHHHHHHHHHHHHhhc-CCeEEE
Confidence 32221 0 2334555556666666 789876
No 361
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=71.32 E-value=26 Score=32.50 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=51.0
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
+..+...+.+.+...++.|++.++-.++-+.|...+...-+.+..+.+.+++.+ +.||.|+-.
T Consensus 18 V~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~-~VPValHLD 80 (282)
T TIGR01858 18 VPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTY-NMPLALHLD 80 (282)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHC-CCCEEEECC
Confidence 446667788888889999999999988888886544335677999999999999 899998754
No 362
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=71.30 E-value=52 Score=26.44 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=42.9
Q ss_pred ceEE-EecCCCCHHHHHHHH-HHHHhCCCCEEEECCCC---CCCCCCHHHHHHHHHHHHhh----CCCCcEEEEeCCCC
Q psy9602 164 FTVM-VQIGGTCFQEVVELA-KHAESLNVHAVLCLPEL---FFTPASVEDLVDYLRDVGEA----APATPLFYYHIPMF 233 (239)
Q Consensus 164 vpVI-aGVg~~St~eAIela-r~A~~aGAdaVlV~PP~---y~~~~s~e~iv~yf~~Vaea----tpdLPIiLYN~P~~ 233 (239)
+.|+ .|+++.++.+.++.. ........|.|+|+.-. .... +.+++.+.|+.+.+. .|+.+|++-..|..
T Consensus 24 ~~v~n~g~~G~t~~~~~~~~~~~~~~~~pd~v~i~~G~ND~~~~~-~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~ 101 (174)
T cd01841 24 KTVNNLGIAGISSRQYLEHIEPQLIQKNPSKVFLFLGTNDIGKEV-SSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPV 101 (174)
T ss_pred CeEEecccccccHHHHHHHHHHHHHhcCCCEEEEEeccccCCCCC-CHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCc
Confidence 3443 388888888887777 55556677777777311 1122 567777777777654 35677777665543
No 363
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=71.20 E-value=24 Score=34.12 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=49.3
Q ss_pred HHHHHhcCCCceEEEecCCCCH-----------------HHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHH
Q psy9602 154 AWMTEAKTHGFTVMVQIGGTCF-----------------QEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDV 216 (239)
Q Consensus 154 ~vve~~~G~rvpVIaGVg~~St-----------------~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~V 216 (239)
.+++.++.+++|+=+||.+-|+ +-|++.++.++++|.+-+.+.-= .. +....++-|+.+
T Consensus 121 ~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~K---sS-~v~~~i~ayrll 196 (360)
T PRK00366 121 EVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVK---AS-DVQDLIAAYRLL 196 (360)
T ss_pred HHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE---cC-CHHHHHHHHHHH
Confidence 3333333337999999988774 34677889999999999998732 12 678899999999
Q ss_pred HhhCCCCcE
Q psy9602 217 GEAAPATPL 225 (239)
Q Consensus 217 aeatpdLPI 225 (239)
++.+ |.|+
T Consensus 197 a~~~-dyPL 204 (360)
T PRK00366 197 AKRC-DYPL 204 (360)
T ss_pred HhcC-CCCc
Confidence 9987 5443
No 364
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=71.16 E-value=19 Score=31.12 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 176 QEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 176 ~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
...+++++.+.+.|++.+++..=.--.. ....=.+.++.+.+.+ ++|++.
T Consensus 145 ~~~~~~~~~~~~~g~~~ii~~~~~~~g~-~~g~~~~~i~~i~~~~-~ipvia 194 (230)
T TIGR00007 145 VSLEELAKRLEELGLEGIIYTDISRDGT-LSGPNFELTKELVKAV-NVPVIA 194 (230)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeecCCCC-cCCCCHHHHHHHHHhC-CCCEEE
Confidence 4668899999999999999875322111 1111266777888877 789764
No 365
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=71.04 E-value=3.9 Score=37.31 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=70.3
Q ss_pred HHHhhhhhcc------ccc---cccccCCCCCccccceEEEeehhhHHHHHHH------HhhHHhhhcCCCC-EEEeccc
Q psy9602 74 RKRRRKRLRN------AHG---EVVMIDPSDLPKRAKWTIIITAGLLLLTCML------LVGITLRMAPIID-QMVNGTT 137 (239)
Q Consensus 74 ~~~~~~~~~~------~~p---~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l------~~~v~~~~~gg~g-lvV~Gst 137 (239)
=++|+...+. |+. .++.||-+.+.+++.|-. +...-||..| +..+++.++-|+. ++.-|..
T Consensus 75 M~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~---gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~ 151 (241)
T COG3142 75 MLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEAAG---GLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGK 151 (241)
T ss_pred HHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHcc---CCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCc
Confidence 4567777766 333 799999999999999874 1111133311 1234444554443 5544433
Q ss_pred cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec--CCCCHHHHHHHHHHHHhCCCCE
Q psy9602 138 GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI--GGTCFQEVVELAKHAESLNVHA 192 (239)
Q Consensus 138 GE~~sLT~eER~~li~~vve~~~G~rvpVIaGV--g~~St~eAIelar~A~~aGAda 192 (239)
.|..|-...++.+++..++ |+.||+|. ...+..+-....-..+=+|-..
T Consensus 152 -----~sa~eg~~~l~~li~~a~g-ri~Im~GaGV~~~N~~~l~~~tg~~e~H~s~~ 202 (241)
T COG3142 152 -----ASALEGLDLLKRLIEQAKG-RIIIMAGAGVRAENIAELVLLTGVTEVHGSAG 202 (241)
T ss_pred -----CchhhhHHHHHHHHHHhcC-CEEEEeCCCCCHHHHHHHHHhcCchhhhhccc
Confidence 8899999999999999999 99999854 4555555545444444444333
No 366
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=71.02 E-value=28 Score=32.36 Aligned_cols=62 Identities=8% Similarity=0.027 Sum_probs=50.4
Q ss_pred EecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 168 VQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 168 aGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
..+...+.+.+...++.|++.+...++-..|..++...-+.+....+.+++.+ +.||.|+-.
T Consensus 21 ~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~-~VPValHLD 82 (286)
T PRK12738 21 PAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTY-NMPLALHLD 82 (286)
T ss_pred EEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC-CCCEEEECC
Confidence 45666788888889999999999888888776554336688999999999999 899998754
No 367
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=70.73 E-value=21 Score=34.58 Aligned_cols=73 Identities=14% Similarity=0.006 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhC
Q psy9602 142 SMTTAERKLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAA 220 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeat 220 (239)
+||.++ ++.+++.. ++|||+ || . ..+-++.|.++|+|+|.|..--.-.....-....-..+|.++.
T Consensus 231 ~ltW~d----i~~lr~~~---~~pvivKgV--~----s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~ 297 (381)
T PRK11197 231 SISWKD----LEWIRDFW---DGPMVIKGI--L----DPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAV 297 (381)
T ss_pred CCCHHH----HHHHHHhC---CCCEEEEec--C----CHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHh
Confidence 466655 44445555 458887 77 3 3455677888999999998633221101112234444444444
Q ss_pred -CCCcEEE
Q psy9602 221 -PATPLFY 227 (239)
Q Consensus 221 -pdLPIiL 227 (239)
+++||++
T Consensus 298 ~~~~~vi~ 305 (381)
T PRK11197 298 KGDITILA 305 (381)
T ss_pred cCCCeEEe
Confidence 2578765
No 368
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=70.69 E-value=24 Score=31.40 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=47.0
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCC----H-------------HHHHHHHHHHHhhCCCCcEEE--
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPAS----V-------------EDLVDYLRDVGEAAPATPLFY-- 227 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s----~-------------e~iv~yf~~VaeatpdLPIiL-- 227 (239)
.+-.|..+.+..++.++..++.|||.+-+--|+.-...+ + +...+..+.+.+.+ ++|+++
T Consensus 5 y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~ 83 (242)
T cd04724 5 YITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMG 83 (242)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEE
Confidence 345677889999999999999999999999776322211 1 24566677777666 789777
Q ss_pred EeCCC
Q psy9602 228 YHIPM 232 (239)
Q Consensus 228 YN~P~ 232 (239)
|-+|.
T Consensus 84 y~n~~ 88 (242)
T cd04724 84 YYNPI 88 (242)
T ss_pred ecCHH
Confidence 85663
No 369
>PRK06801 hypothetical protein; Provisional
Probab=70.68 E-value=60 Score=30.11 Aligned_cols=88 Identities=11% Similarity=-0.002 Sum_probs=63.8
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
++...+-..-+++..+-|+...+..+....+++.+.+.. .+||.++.-+.... +.++.|.+.|++.||+=-..+
T Consensus 35 i~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~---~vpV~lHlDH~~~~---e~i~~Ai~~GftSVm~D~S~l 108 (286)
T PRK06801 35 FAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARH---DIPVVLNLDHGLHF---EAVVRALRLGFSSVMFDGSTL 108 (286)
T ss_pred HHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHC---CCCEEEECCCCCCH---HHHHHHHHhCCcEEEEcCCCC
Confidence 334444556677888888888888898888888888765 68999999876543 556788899999999964332
Q ss_pred CCCCCHHHHHHHHHHHHh
Q psy9602 201 FTPASVEDLVDYLRDVGE 218 (239)
Q Consensus 201 ~~~~s~e~iv~yf~~Vae 218 (239)
+.++-++.-+++.+
T Consensus 109 ----~~eeNi~~t~~v~~ 122 (286)
T PRK06801 109 ----EYEENVRQTREVVK 122 (286)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 44666666666543
No 370
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=70.57 E-value=26 Score=32.49 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=49.7
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+..+...+.+.+...++.|++.+...++-..|.......-+.+..+.+.+++.+ +.||.|+-.-
T Consensus 20 V~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~-~VPValHLDH 83 (284)
T PRK12857 20 VGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKA-SVPVALHLDH 83 (284)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHC-CCCEEEECCC
Confidence 345566678888888999999998888888876544325577888999999999 8999987543
No 371
>PRK15452 putative protease; Provisional
Probab=70.44 E-value=35 Score=33.53 Aligned_cols=72 Identities=8% Similarity=0.003 Sum_probs=46.0
Q ss_pred hhcCCCC-EEEeccc----cCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec----CCCCHHHHHHHHHHHHhCCCCEEE
Q psy9602 124 RMAPIID-QMVNGTT----GEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI----GGTCFQEVVELAKHAESLNVHAVL 194 (239)
Q Consensus 124 ~~~gg~g-lvV~Gst----GE~~sLT~eER~~li~~vve~~~G~rvpVIaGV----g~~St~eAIelar~A~~aGAdaVl 194 (239)
+++.|++ +++.|.. .-...++.+|-.+.++.+-+. ++.|++-+ .....+...++.+...++|+|+++
T Consensus 19 Ai~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~----g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvI 94 (443)
T PRK15452 19 AFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHAL----GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALI 94 (443)
T ss_pred HHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHc----CCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 3566666 4454321 112356778888887776553 34555542 233466777788888899999999
Q ss_pred ECCCC
Q psy9602 195 CLPEL 199 (239)
Q Consensus 195 V~PP~ 199 (239)
|..|-
T Consensus 95 V~d~G 99 (443)
T PRK15452 95 MSDPG 99 (443)
T ss_pred EcCHH
Confidence 98654
No 372
>PRK08185 hypothetical protein; Provisional
Probab=70.36 E-value=20 Score=33.33 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=50.9
Q ss_pred EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
-|......+.+.+...++.|++.+...++-+.|...+. ....+..+.+.+++.+ +.||.|+-.-
T Consensus 14 aV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~-~~~~~~~~~~~~a~~~-~vPV~lHLDH 77 (283)
T PRK08185 14 AVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDF-LGDNFFAYVRERAKRS-PVPFVIHLDH 77 (283)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhh-ccHHHHHHHHHHHHHC-CCCEEEECCC
Confidence 34456677889999999999999999999888876544 2245999999999999 8999987543
No 373
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=70.23 E-value=27 Score=32.33 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=50.1
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
|..+...+.+.+...++.|++.++..++-+.|......+-+.+..+.+.+++.+ +.||.|+-.
T Consensus 15 V~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~-~VPV~lHLD 77 (276)
T cd00947 15 VGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERA-SVPVALHLD 77 (276)
T ss_pred EEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC-CCCEEEECC
Confidence 345566788888889999999999998888876543325688999999999998 899999754
No 374
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=69.95 E-value=29 Score=32.30 Aligned_cols=64 Identities=5% Similarity=0.050 Sum_probs=51.2
Q ss_pred EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
-+..+...+.+.+...++.|++.++..++-..|...+..+.+.+..+.+.+++.+ +.||.|+-.
T Consensus 19 aV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~-~vPV~lHLD 82 (283)
T PRK07998 19 LAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKM-DVPVSLHLD 82 (283)
T ss_pred EEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHC-CCCEEEECc
Confidence 3445667788888889999999999999888886544335678899999999999 899998754
No 375
>cd07897 Adenylation_DNA_ligase_Bac1 Adenylation domain of putative bacterial ATP-dependent DNA ligases. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of predicted bacterial ATP-dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three-step reaction mechanism. The adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family, including this group. The adenylation domain binds ATP and contains many of the active site residues.
Probab=69.86 E-value=14 Score=32.08 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=48.3
Q ss_pred CcCCCHHHHHHHHHHHHHHhc-CCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 140 GVSMTTAERKLNLEAWMTEAK-THGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 140 ~~sLT~eER~~li~~vve~~~-G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
...+...||+++++.++.... + ++.++-.+...+.+++.++-+.+.+.|..|||+=.|.
T Consensus 128 l~~~pl~eRr~~L~~l~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGiv~K~~~ 187 (207)
T cd07897 128 LRALPLRERRARLEALLARLPPP-RLDLSPLIAFADWEELAALRAQSRERGAEGLMLKRRD 187 (207)
T ss_pred hhhCCHHHHHHHHHHhhhhcCCC-ceeecceEecCCHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 455789999999999997763 3 5555556777788899999999999999999998754
No 376
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=69.60 E-value=34 Score=30.30 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEec-CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCc
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQI-GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATP 224 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaGV-g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLP 224 (239)
++=.+.++.+.+.++. ++++++-. .+-+.++++++++..++.|.+.+=- |.. + + -.+.++.|.+.+ ++|
T Consensus 113 ~~d~~~v~~vr~~~g~-~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEe--P~~--~---~-d~~~~~~l~~~~-~ip 182 (265)
T cd03315 113 ARDVAVVAALREAVGD-DAELRVDANRGWTPKQAIRALRALEDLGLDYVEQ--PLP--A---D-DLEGRAALARAT-DTP 182 (265)
T ss_pred HHHHHHHHHHHHhcCC-CCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC--CCC--c---c-cHHHHHHHHhhC-CCC
Confidence 5557889999998876 78999866 4578999999999999988776643 321 1 1 135567788888 799
Q ss_pred EEE
Q psy9602 225 LFY 227 (239)
Q Consensus 225 IiL 227 (239)
|+.
T Consensus 183 ia~ 185 (265)
T cd03315 183 IMA 185 (265)
T ss_pred EEE
Confidence 876
No 377
>cd07903 Adenylation_DNA_ligase_IV Adenylation domain of DNA Ligase IV. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligase in eukaryotic cells (I, III and IV). DNA ligase IV is required for DNA non-homologous end joining pathways, including recombination of the V(D)J immunoglobulin gene segments in cells of the mammalian immune system. DNA ligase IV is stabilized by forming a complex with XRCC4, a nuclear phosphoprotein, which is phosphorylated by DNA-dependent protein kinase. DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more di
Probab=69.57 E-value=12 Score=32.47 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=52.6
Q ss_pred Eecccc-CCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 133 VNGTTG-EGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 133 V~GstG-E~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
++-..| ....+...||+++++.++....+ ++-++-.....+.+++.++.+.+.+.|..|+|+=.|.
T Consensus 138 iL~~~g~~l~~~pl~eR~~~L~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~ 204 (225)
T cd07903 138 ILYLNGKSLTNLPLHERKKLLEKIITPIPG-RLEVVKRTEASTKEEIEEALNEAIDNREEGIVVKDLD 204 (225)
T ss_pred EEEECCeecccCcHHHHHHHHHHhcCCCCC-eEEEEEEEeCCCHHHHHHHHHHHHHcCCceEEEecCC
Confidence 333344 35678999999999999876555 5666667777888999999999999999999998865
No 378
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=69.53 E-value=50 Score=27.74 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=36.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
...+++..+..+.....+..+.+...++|++++.+.. . + +..+ ..+ ... ++|+++.+.+
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~---~-~-~~~~---~~~-~~~-~ipvv~~~~~ 87 (268)
T cd01575 29 GYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLE---H-T-ERTR---QLL-RAA-GIPVVEIMDL 87 (268)
T ss_pred CCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCC---C-C-HHHH---HHH-Hhc-CCCEEEEecC
Confidence 4566665555566666777777788888998888643 1 2 2222 222 234 6888887653
No 379
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=69.45 E-value=24 Score=33.61 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhC
Q psy9602 142 SMTTAERKLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAA 220 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeat 220 (239)
.||.+. ++.+.+.. ++||++ |+. ..+.++.|.++|+|++.|..--.-........++...+|.++.
T Consensus 207 ~~~~~~----l~~lr~~~---~~PvivKgv~------~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~ 273 (351)
T cd04737 207 KLSPAD----IEFIAKIS---GLPVIVKGIQ------SPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAV 273 (351)
T ss_pred CCCHHH----HHHHHHHh---CCcEEEecCC------CHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHh
Confidence 456544 34445544 469998 453 2367788999999999997522111001112345566676665
Q ss_pred C-CCcEEE
Q psy9602 221 P-ATPLFY 227 (239)
Q Consensus 221 p-dLPIiL 227 (239)
+ ++||++
T Consensus 274 ~~~i~vi~ 281 (351)
T cd04737 274 NHRVPIIF 281 (351)
T ss_pred CCCCeEEE
Confidence 2 478765
No 380
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=69.41 E-value=29 Score=34.34 Aligned_cols=58 Identities=12% Similarity=-0.032 Sum_probs=43.4
Q ss_pred CCcCCCHHHHHHHHHHHHHHhc----CCCceEEEecCCCCHHHHHHHHHHHHhC-CCC----EEEECC
Q psy9602 139 EGVSMTTAERKLNLEAWMTEAK----THGFTVMVQIGGTCFQEVVELAKHAESL-NVH----AVLCLP 197 (239)
Q Consensus 139 E~~sLT~eER~~li~~vve~~~----G~rvpVIaGVg~~St~eAIelar~A~~a-GAd----aVlV~P 197 (239)
.-.+...+||...+..+++.+. . +.-..+++++.++++.++.++.|++. |++ ++|+-+
T Consensus 198 ~q~f~p~~eRv~~~~~ai~~a~~eTG~-~~~y~~NiTa~~~~em~~ra~~a~e~~G~~~~~~~vmv~~ 264 (443)
T PRK13475 198 NQVFAPLKKTVPLVADAMKRAQDETGE-AKLFSANITADDHYEMIARGEYILETFGENADHVAFLVDG 264 (443)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCC-ceeEeccCCCCCHHHHHHHHHHHHHhcCCCccceEEEEcC
Confidence 4457778999887776666433 2 33445689999999999999999998 988 666653
No 381
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=69.38 E-value=36 Score=30.16 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHH
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRD 215 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~ 215 (239)
.++++.+.+.+ ++|||++=+-.+.++..++.+. .||+++++..-.|+...+.+++.++.+.
T Consensus 186 ~~~i~~~~~~~---~ipvia~GGv~s~~d~~~~~~~---~G~~gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 186 LELTRAVSDAV---NVPVIASGGAGNLEHFVEAFTE---GGADAALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred HHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHh---CCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence 45677777665 5799998888888888765433 7999999987666544477888777653
No 382
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=69.34 E-value=47 Score=30.84 Aligned_cols=88 Identities=11% Similarity=0.044 Sum_probs=62.3
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
++...+...-+++.-+-|+.-.+..+....+++.+++.. ++||.+..-+... .+.++.|.++|++.||+=-..+
T Consensus 33 i~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~---~VPValHLDHg~~---~e~i~~ai~~GFtSVM~DgS~l 106 (282)
T TIGR01858 33 VETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTY---NMPLALHLDHHES---LDDIRQKVHAGVRSAMIDGSHF 106 (282)
T ss_pred HHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHC---CCCEEEECCCCCC---HHHHHHHHHcCCCEEeecCCCC
Confidence 344455566677777888887778787777777777764 6999999876654 4567889999999999986542
Q ss_pred CCCCCHHHHHHHHHHHHh
Q psy9602 201 FTPASVEDLVDYLRDVGE 218 (239)
Q Consensus 201 ~~~~s~e~iv~yf~~Vae 218 (239)
+.++=++.-+++.+
T Consensus 107 ----p~eeNi~~T~~vv~ 120 (282)
T TIGR01858 107 ----PFAQNVKLVKEVVD 120 (282)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 34555555554444
No 383
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=69.32 E-value=66 Score=26.95 Aligned_cols=34 Identities=3% Similarity=0.055 Sum_probs=19.0
Q ss_pred ceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602 164 FTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP 197 (239)
Q Consensus 164 vpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P 197 (239)
.-+++.....+.....+.++.....++|++++.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 63 (266)
T cd06282 30 YSLLLATTDYDAEREADAVETLLRQRVDGLILTV 63 (266)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 4444443444555555666666666667776654
No 384
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=69.26 E-value=63 Score=28.75 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=48.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC--CCC----------CCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP--ELF----------FTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P--P~y----------~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
+.|+++++.+.+.++..+.++.+++. ++.+=+-- |.- +.. +++.+.+..+++.+ + ++||.+==
T Consensus 72 ~~p~~vqi~g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~-~p~~l~eiv~avr~-~-~~pVsvKi 146 (233)
T cd02911 72 NVLVGVNVRSSSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLK-DPERLSEFIKALKE-T-GVPVSVKI 146 (233)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcC-CHHHHHHHHHHHHh-c-CCCEEEEE
Confidence 57999999999999999999999885 57776643 221 111 57889999999987 6 79987743
No 385
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=69.25 E-value=31 Score=33.07 Aligned_cols=83 Identities=20% Similarity=0.163 Sum_probs=53.7
Q ss_pred HHHHHHHHHHH----HHHhcCCCceEEEecCC--------CCHHHHHHHHHHHHhCC-CCEEEECCCCCCCCC----C-H
Q psy9602 145 TAERKLNLEAW----MTEAKTHGFTVMVQIGG--------TCFQEVVELAKHAESLN-VHAVLCLPELFFTPA----S-V 206 (239)
Q Consensus 145 ~eER~~li~~v----ve~~~G~rvpVIaGVg~--------~St~eAIelar~A~~aG-AdaVlV~PP~y~~~~----s-~ 206 (239)
.|.|.+++..+ .+.++. ..||.+=++. .+.++++++++..++.| +|.+-+.-+.+.... . +
T Consensus 195 lENR~Rf~~EVv~aVr~~vg~-~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~ 273 (363)
T COG1902 195 LENRARFLLEVVDAVREAVGA-DFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGP 273 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCcccccc
Confidence 46676555544 445555 5667664433 35679999999999999 799999988875321 1 1
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 207 EDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 207 e~iv~yf~~VaeatpdLPIiLYN 229 (239)
.-...|-+.+...+ .+|++.=.
T Consensus 274 ~~~~~~a~~i~~~~-~~pvi~~G 295 (363)
T COG1902 274 GYQVEFAARIKKAV-RIPVIAVG 295 (363)
T ss_pred chhHHHHHHHHHhc-CCCEEEeC
Confidence 12223444466777 78888643
No 386
>PRK07695 transcriptional regulator TenI; Provisional
Probab=69.09 E-value=12 Score=31.99 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=35.2
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC--CCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 167 MVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF--TPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 167 IaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~--~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
++|++..+.++ ++.|.++|+|.+++.|.+-- ++.....-.++++.+.+.+ ++||+.
T Consensus 97 ~ig~s~~s~e~----a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~-~ipvia 154 (201)
T PRK07695 97 HVGYSVHSLEE----AIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL-SIPVIA 154 (201)
T ss_pred EEEEeCCCHHH----HHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC-CCCEEE
Confidence 45777666554 56788999999987542211 1100111257788888888 789875
No 387
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=69.05 E-value=58 Score=26.11 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=51.5
Q ss_pred CEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCC--HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHH
Q psy9602 130 DQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTC--FQEVVELAKHAESLNVHAVLCLPELFFTPASVE 207 (239)
Q Consensus 130 glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~S--t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e 207 (239)
++.+.|..|.. ..+-..+++...+.-.. .--|++.+|+++ +++.++.+-.....++.-+++.|| .-.. -.+
T Consensus 23 ~~~i~a~~g~~----~~~~~~~l~~~~~~~~~-~d~vvi~lGtNd~~~~~nl~~ii~~~~~~~~ivlv~~~-~~~~-~~~ 95 (150)
T cd01840 23 NIQIDAKVGRQ----MSEAPDLIRQLKDSGKL-RKTVVIGLGTNGPFTKDQLDELLDALGPDRQVYLVNPH-VPRP-WEP 95 (150)
T ss_pred CCEEEeeeccc----HHHHHHHHHHHHHcCCC-CCeEEEEecCCCCCCHHHHHHHHHHcCCCCEEEEEECC-CCcc-hHH
Confidence 45566655533 35566666666653222 234455555554 455555444444446676666665 3222 457
Q ss_pred HHHHHHHHHHhhCCCCcEEE
Q psy9602 208 DLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 208 ~iv~yf~~VaeatpdLPIiL 227 (239)
++-+.++++++..|+++++=
T Consensus 96 ~~n~~~~~~a~~~~~v~~id 115 (150)
T cd01840 96 DVNAYLLDAAKKYKNVTIID 115 (150)
T ss_pred HHHHHHHHHHHHCCCcEEec
Confidence 78888999999875555543
No 388
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=69.04 E-value=34 Score=31.33 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=47.4
Q ss_pred CceEEEecC-CCCHHHHHHHHHHHHhCCCCEEEEC------CCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 163 GFTVMVQIG-GTCFQEVVELAKHAESLNVHAVLCL------PELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 163 rvpVIaGVg-~~St~eAIelar~A~~aGAdaVlV~------PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+.-||+|-. -+|.+.+++.|+..+++|+..+-.. .|+.|.. --++-+..++++++.. ++|++-
T Consensus 27 ~~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G-~g~~gl~~l~~~~~~~-Gl~~~t 96 (266)
T PRK13398 27 EKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQG-LGEEGLKILKEVGDKY-NLPVVT 96 (266)
T ss_pred CEEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCC-cHHHHHHHHHHHHHHc-CCCEEE
Confidence 677888874 5688999999999999999866666 3565554 2355566677778888 899874
No 389
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=68.92 E-value=9 Score=36.39 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEe-----------------------------cCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQ-----------------------------IGGTCFQEVVELAKHAESLNVHAVLCL 196 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaG-----------------------------Vg~~St~eAIelar~A~~aGAdaVlV~ 196 (239)
+=|...|+...+..+-.++|||+= .--.+.+||++.+..=.+-|||.+||=
T Consensus 174 DGrV~aIR~aLd~ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVK 253 (330)
T COG0113 174 DGRVGAIREALDEAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVK 253 (330)
T ss_pred cchHHHHHHHHHHcCCCcceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEc
Confidence 557777888777764346777751 111247888888888888899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 197 PELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 197 PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
|-..| ++-.+.+.+.+ ++|+.-||..+
T Consensus 254 Pal~Y--------LDIi~~vk~~~-~lP~~AYqVSG 280 (330)
T COG0113 254 PALPY--------LDIIRRVKEEF-NLPVAAYQVSG 280 (330)
T ss_pred CCchH--------HHHHHHHHHhc-CCCeEEEecch
Confidence 85433 45667888889 79999999753
No 390
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=68.83 E-value=9.4 Score=31.36 Aligned_cols=58 Identities=12% Similarity=0.230 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCC----CCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Q psy9602 175 FQEVVELAKHAESLNVHAVLCLPELFF----TPASVEDLVDYLRDVGEAAPATPLFYYHIPMF 233 (239)
Q Consensus 175 t~eAIelar~A~~aGAdaVlV~PP~y~----~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~ 233 (239)
....-++.+.+++.+++.++|--|... .+ ....+.+|.+.+...+|++||.++|--..
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~-~~~~v~~f~~~L~~~~~~ipV~~~DEr~T 98 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESE-QARRVRKFAEELKKRFPGIPVILVDERLT 98 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-C-CHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccH-HHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence 455556777788889999999999854 33 67888999999999988899999997543
No 391
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.80 E-value=76 Score=31.03 Aligned_cols=95 Identities=9% Similarity=-0.072 Sum_probs=57.0
Q ss_pred hHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC-C
Q psy9602 120 GITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP-E 198 (239)
Q Consensus 120 ~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P-P 198 (239)
.+...++.|++++++=++. +.+. ...++++.+.+... +++||+|-.. +.+.++.+.++|||+|.+-. |
T Consensus 157 ~v~~lv~aGvDvI~iD~a~-g~~~---~~~~~v~~ik~~~p--~~~vi~g~V~-----T~e~a~~l~~aGaD~I~vG~g~ 225 (404)
T PRK06843 157 RVEELVKAHVDILVIDSAH-GHST---RIIELVKKIKTKYP--NLDLIAGNIV-----TKEAALDLISVGADCLKVGIGP 225 (404)
T ss_pred HHHHHHhcCCCEEEEECCC-CCCh---hHHHHHHHHHhhCC--CCcEEEEecC-----CHHHHHHHHHcCCCEEEECCCC
Confidence 3455577888877642222 4433 34455666666554 4788885544 25667777889999998763 3
Q ss_pred CC---------CCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 199 LF---------FTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 199 ~y---------~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
.. ... .+-..+.....+++.. ++|||.
T Consensus 226 Gs~c~tr~~~g~g~-p~ltai~~v~~~~~~~-~vpVIA 261 (404)
T PRK06843 226 GSICTTRIVAGVGV-PQITAICDVYEVCKNT-NICIIA 261 (404)
T ss_pred CcCCcceeecCCCC-ChHHHHHHHHHHHhhc-CCeEEE
Confidence 21 111 2444555556777777 789874
No 392
>PRK06256 biotin synthase; Validated
Probab=68.76 E-value=66 Score=29.56 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602 143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCL 196 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~ 196 (239)
-+.+++.+.++.+.+.--....-+|+|. .++.++.++.+....++|++.+-+.
T Consensus 184 ~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~~~~v~i~ 236 (336)
T PRK06256 184 HTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKELDADSIPIN 236 (336)
T ss_pred CCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhCCCCEEeec
Confidence 4789999999998875111134467787 6899999999999999999987653
No 393
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=68.76 E-value=39 Score=23.91 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCceEEEec-CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 152 LEAWMTEAKTHGFTVMVQI-GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 152 i~~vve~~~G~rvpVIaGV-g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
++.+.+.+++ ++.+++-. .+-+.++++++++..++. ..+--|... +.+ +-++.|.+++ ++||++
T Consensus 2 i~avr~~~g~-~~~l~vDan~~~~~~~a~~~~~~l~~~----~~iEeP~~~-----~d~-~~~~~l~~~~-~~pia~ 66 (67)
T PF01188_consen 2 IRAVREAVGP-DIDLMVDANQAWTLEEAIRLARALEDY----EWIEEPLPP-----DDL-DGLAELRQQT-SVPIAA 66 (67)
T ss_dssp HHHHHHHHST-TSEEEEE-TTBBSHHHHHHHHHHHGGG----SEEESSSST-----TSH-HHHHHHHHHC-SSEEEE
T ss_pred HHHHHHhhCC-CCeEEEECCCCCCHHHHHHHHHHcChh----heeecCCCC-----CCH-HHHHHHHHhC-CCCEEe
Confidence 5677788777 89999955 567899999999999984 444444422 222 5678888888 899874
No 394
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=68.63 E-value=61 Score=30.07 Aligned_cols=102 Identities=14% Similarity=0.003 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602 108 AGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES 187 (239)
Q Consensus 108 A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~ 187 (239)
||-....+++..-++...+-..-+++.-+-++.-.+..+.-..+++.+++.. ++||.+..-+... .+.++.|.+
T Consensus 22 AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~---~VPValHLDH~~~---~e~i~~ai~ 95 (284)
T PRK12737 22 AFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKY---NIPLALHLDHHED---LDDIKKKVR 95 (284)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHC---CCCEEEECCCCCC---HHHHHHHHH
Confidence 3333333333333444455556677777777777777776666666666554 6999999877654 467789999
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHhh
Q psy9602 188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 188 aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaea 219 (239)
+|++.||+=.... +.++=++.-+++.+-
T Consensus 96 ~GftSVMiDgS~l----p~eeNi~~T~~vv~~ 123 (284)
T PRK12737 96 AGIRSVMIDGSHL----SFEENIAIVKEVVEF 123 (284)
T ss_pred cCCCeEEecCCCC----CHHHHHHHHHHHHHH
Confidence 9999999986542 345555555555443
No 395
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=68.58 E-value=49 Score=30.23 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHH--HHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQE--VVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAP 221 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~e--AIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatp 221 (239)
|.+.-.++++.+.+. .++|++.-...+..-. .-++.+.|.++|+|++++.. . +.++..+|+..+.+ .
T Consensus 75 ~~~~~~~~~~~~r~~---~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipD---L---P~ee~~~~~~~~~~-~- 143 (263)
T CHL00200 75 NLNKILSILSEVNGE---IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPD---L---PYEESDYLISVCNL-Y- 143 (263)
T ss_pred CHHHHHHHHHHHhcC---CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecC---C---CHHHHHHHHHHHHH-c-
Confidence 344445555555432 2578766555544322 23467778888888888763 1 22555555555544 3
Q ss_pred CCcEEEEeCCCC
Q psy9602 222 ATPLFYYHIPMF 233 (239)
Q Consensus 222 dLPIiLYN~P~~ 233 (239)
++..++.=.|..
T Consensus 144 gi~~I~lv~PtT 155 (263)
T CHL00200 144 NIELILLIAPTS 155 (263)
T ss_pred CCCEEEEECCCC
Confidence 566666666643
No 396
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=68.54 E-value=27 Score=32.31 Aligned_cols=74 Identities=22% Similarity=0.086 Sum_probs=48.3
Q ss_pred cCCCCEEEec--cccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEe----------------cCCCCHHHHHHHHHHHHh
Q psy9602 126 APIIDQMVNG--TTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQ----------------IGGTCFQEVVELAKHAES 187 (239)
Q Consensus 126 ~gg~glvV~G--stGE~~sLT~eER~~li~~vve~~~G~rvpVIaG----------------Vg~~St~eAIelar~A~~ 187 (239)
.|+.++-+.. ..|....++.++-.++++.+.+. +.||++. +.+.|+.+++++++.|++
T Consensus 93 ~Gv~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~----g~~v~~H~Er~~~la~~~g~~l~i~Hiss~~~le~i~~ak~ 168 (337)
T cd01302 93 AGINSLKVFMNYYFGELFDVDDGTLMRTFLEIASR----GGPVMVHAERAAQLAEEAGANVHIAHVSSGEALELIKFAKN 168 (337)
T ss_pred cCCcEEEEEEeccCCCccccCHHHHHHHHHHHHhc----CCeEEEeHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHH
Confidence 3444553332 34443367888888888777653 2355433 556678999999999999
Q ss_pred CCCCEEEECCCCCCCC
Q psy9602 188 LNVHAVLCLPELFFTP 203 (239)
Q Consensus 188 aGAdaVlV~PP~y~~~ 203 (239)
.|.+...=..|+|.-.
T Consensus 169 ~g~~vt~ev~ph~L~l 184 (337)
T cd01302 169 KGVKVTCEVCPHHLFL 184 (337)
T ss_pred CCCcEEEEcChhhhee
Confidence 9988666666676443
No 397
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of archaeal DNA ligases and bacterial proteins similar to Mycobacterium tuberculosis LigB. Members of this group contain adeny
Probab=68.48 E-value=14 Score=31.82 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=48.6
Q ss_pred CcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 140 GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 140 ~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
...+...||+++++.++... + .+.++-.+...+.+++.++.+.+.+.|..|+|+=.+-
T Consensus 132 l~~~pl~eR~~~L~~~~~~~-~-~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGiv~K~~~ 189 (207)
T cd07901 132 LLDLPLSERRKILEEIVPET-E-AILLAPRIVTDDPEEAEEFFEEALEAGHEGVMVKSLD 189 (207)
T ss_pred hhcCCHHHHHHHHHHhcCcC-C-cEEEEEEEecCCHHHHHHHHHHHHHcCCceEEEeCCC
Confidence 46789999999999988754 4 5677667777888999999999999999999997654
No 398
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=68.13 E-value=78 Score=27.20 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCCceEEEec-CC-CCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQI-GG-TCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGV-g~-~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
.++++.+.+.+...+.-+++.. .. .+.++.++..+.+.+.++|++++.|.. . +... .+..+. .. ++|++
T Consensus 15 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~---~---~~~~-~~~~~~-~~-giPvV 85 (268)
T cd06306 15 LSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVS---P---DGLN-EILQQV-AA-SIPVI 85 (268)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC---h---hhHH-HHHHHH-HC-CCCEE
Confidence 3344433333332234555432 22 356778888999999999999998532 1 2222 334443 45 79999
Q ss_pred EEeCC
Q psy9602 227 YYHIP 231 (239)
Q Consensus 227 LYN~P 231 (239)
++|.+
T Consensus 86 ~~~~~ 90 (268)
T cd06306 86 ALVND 90 (268)
T ss_pred EeccC
Confidence 88754
No 399
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=68.13 E-value=19 Score=34.29 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=45.3
Q ss_pred CceEEEec-CCCCHHHHHHHHHHHHhCCCCEEEE------CCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 163 GFTVMVQI-GGTCFQEVVELAKHAESLNVHAVLC------LPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 163 rvpVIaGV-g~~St~eAIelar~A~~aGAdaVlV------~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+..+|+|- +-+|.+.+++.|+..+++|++.+-. +.||.|+... ++=+.++.++++.+ ++|++-
T Consensus 93 ~~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g-~~gL~~L~~~~~~~-Gl~v~t 162 (335)
T PRK08673 93 KPVVIAGPCSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLG-EEGLKLLAEAREET-GLPIVT 162 (335)
T ss_pred ceEEEEecCccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCccccccc-HHHHHHHHHHHHHc-CCcEEE
Confidence 67788885 4568899999999999999984322 2345455424 45556888888888 899875
No 400
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=68.07 E-value=66 Score=29.33 Aligned_cols=77 Identities=16% Similarity=0.041 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecC--CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCC
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQIG--GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPAT 223 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaGVg--~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdL 223 (239)
.=+..+++-+.+.+...+..+++.-+ ..+.+...+..+.+...++|++++.|- +.+.+...+ .+. +. ++
T Consensus 59 ~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~------~~~~~~~~l-~~~-~~-gi 129 (343)
T PRK10936 59 SYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAV------TPDGLNPDL-ELQ-AA-NI 129 (343)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC------ChHHhHHHH-HHH-HC-CC
Confidence 33444555454444332456655433 345777778888899999999999852 224444455 443 45 79
Q ss_pred cEEEEeCC
Q psy9602 224 PLFYYHIP 231 (239)
Q Consensus 224 PIiLYN~P 231 (239)
|+++++.+
T Consensus 130 PvV~~~~~ 137 (343)
T PRK10936 130 PVIALVNG 137 (343)
T ss_pred CEEEecCC
Confidence 99988654
No 401
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=68.05 E-value=27 Score=30.11 Aligned_cols=51 Identities=20% Similarity=0.111 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 175 FQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 175 t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
-...+++++.+++.|++.++++.-.--.. ....=.+.++.+.+.+ ++|++.
T Consensus 145 ~~~~~e~~~~~~~~g~~~ii~~~~~~~g~-~~G~d~~~i~~l~~~~-~ipvia 195 (233)
T PRK00748 145 GVTAEDLAKRFEDAGVKAIIYTDISRDGT-LSGPNVEATRELAAAV-PIPVIA 195 (233)
T ss_pred CCCHHHHHHHHHhcCCCEEEEeeecCcCC-cCCCCHHHHHHHHHhC-CCCEEE
Confidence 34568899999999999998885321111 1111257778888888 689765
No 402
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=67.99 E-value=49 Score=32.99 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=68.3
Q ss_pred EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHH
Q psy9602 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDY 212 (239)
Q Consensus 133 V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~y 212 (239)
+.=..||.+.=+.+|-.+|++.+....+| +--|..|+. +.++.|.=.+.+.++|+|.+++---+|.. ..+-+.+|
T Consensus 193 ~~eQg~e~HaApldE~~~Va~~Akk~gkG--veaI~~vGD-GyddLI~G~~a~id~~vDvfVvEGgPFN~--a~dRl~aF 267 (505)
T PF10113_consen 193 TEEQGGEEHAAPLDEMEEVAELAKKYGKG--VEAIMHVGD-GYDDLITGLKACIDMGVDVFVVEGGPFNR--AKDRLKAF 267 (505)
T ss_pred eeccCCcccCCCHHHHHHHHHHHHHhCCC--ceEEEEecC-ChHHHHHHHHHHHhcCCcEEEEeCCCccc--chhHHHHH
Confidence 33344999999999999999999999876 777777775 89999999999999999999998755544 46788888
Q ss_pred HHHHHhh
Q psy9602 213 LRDVGEA 219 (239)
Q Consensus 213 f~~Vaea 219 (239)
-++|+.+
T Consensus 268 akaVa~s 274 (505)
T PF10113_consen 268 AKAVAAS 274 (505)
T ss_pred HHHHHHh
Confidence 8888764
No 403
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=67.94 E-value=1.3e+02 Score=33.39 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=68.1
Q ss_pred hHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhc--CCCceEEEe-cC---------CCCHHHHHHHHHHHHh
Q psy9602 120 GITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAK--THGFTVMVQ-IG---------GTCFQEVVELAKHAES 187 (239)
Q Consensus 120 ~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~--G~rvpVIaG-Vg---------~~St~eAIelar~A~~ 187 (239)
-+...+++|++++++-|. .+..|-+.++..+.+... +.++|||+. +. +.+++.++..+ +.
T Consensus 153 q~~~L~~~GvD~iliETi-----~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l---~~ 224 (1178)
T TIGR02082 153 QAKGLLDGGVDLLLIETC-----FDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSL---EH 224 (1178)
T ss_pred HHHHHHhCCCCEEEEecc-----CCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHH---hc
Confidence 344556888988877553 466788888887776431 116899998 22 23455555444 46
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 188 aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
.|++++.+-= ..+++.+..+.+.+...+ +.||++|-|-
T Consensus 225 ~~~~avGlNC-----s~gP~~m~~~l~~l~~~~-~~pi~vyPNA 262 (1178)
T TIGR02082 225 AGIDMIGLNC-----ALGPDEMRPHLKHLSEHA-EAYVSCHPNA 262 (1178)
T ss_pred CCCCEEEeCC-----CCCHHHHHHHHHHHHHhc-CceEEEEeCC
Confidence 7888877651 114699999999999998 7999999773
No 404
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=67.86 E-value=19 Score=34.67 Aligned_cols=72 Identities=17% Similarity=0.081 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhC
Q psy9602 142 SMTTAERKLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAA 220 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeat 220 (239)
.|+.+ -++.+.+..+ .|||+ || .+ .+-++.|.++|+|+|.|...-+-+.-....-++-+.++.+++
T Consensus 222 ~~~w~----~i~~ir~~~~---~pviiKgV--~~----~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~ 288 (361)
T cd04736 222 SFNWQ----DLRWLRDLWP---HKLLVKGI--VT----AEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT 288 (361)
T ss_pred cCCHH----HHHHHHHhCC---CCEEEecC--CC----HHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh
Confidence 45543 3555556654 46665 76 23 456677888999999998754433201112455666777777
Q ss_pred CCCcEEE
Q psy9602 221 PATPLFY 227 (239)
Q Consensus 221 pdLPIiL 227 (239)
++||++
T Consensus 289 -~~~vi~ 294 (361)
T cd04736 289 -YKPVLI 294 (361)
T ss_pred -CCeEEE
Confidence 688765
No 405
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=67.66 E-value=58 Score=30.32 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=58.7
Q ss_pred hcCCCC-EEEecc-ccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602 125 MAPIID-QMVNGT-TGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT 202 (239)
Q Consensus 125 ~~gg~g-lvV~Gs-tGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~ 202 (239)
.+.|+. ++.+|+ .|-+.-|....-.+++ ++. . ++|||++.|=.+..++ ..|.++|+|+|++..-..-.
T Consensus 155 ed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i---~e~--~-~vpVivdAGIgt~sDa----~~AmElGaDgVL~nSaIakA 224 (267)
T CHL00162 155 EDIGCATVMPLGSPIGSGQGLQNLLNLQII---IEN--A-KIPVIIDAGIGTPSEA----SQAMELGASGVLLNTAVAQA 224 (267)
T ss_pred HHcCCeEEeeccCcccCCCCCCCHHHHHHH---HHc--C-CCcEEEeCCcCCHHHH----HHHHHcCCCEEeecceeecC
Confidence 466664 666664 6888888777665555 443 2 6899998776666664 56889999999999877644
Q ss_pred CCCHHHHHHHHHHHHh
Q psy9602 203 PASVEDLVDYLRDVGE 218 (239)
Q Consensus 203 ~~s~e~iv~yf~~Vae 218 (239)
. ++.++..-|+.-.+
T Consensus 225 ~-dP~~mA~a~~~AV~ 239 (267)
T CHL00162 225 K-NPEQMAKAMKLAVQ 239 (267)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 4 77777777665443
No 406
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=67.63 E-value=86 Score=27.48 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=44.7
Q ss_pred CceEEEecC----CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIG----GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg----~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+..||+.-- ..+.++.++..+.+++.|||.+=+.-..--.. +--.+..+...+.+. ++.|++.|+.=
T Consensus 118 ~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~-D~~~ll~~~~~~~~~-~~~p~i~~~MG 188 (228)
T TIGR01093 118 GTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKE-DVLTLLEITNKVDEH-ADVPLITMSMG 188 (228)
T ss_pred CCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHH-HHHHHHHHHHHHHhc-CCCCEEEEeCC
Confidence 577887553 35678889999999999999985543222111 333555555555444 47899999863
No 407
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=67.53 E-value=21 Score=28.72 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHHh-cCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602 143 MTTAERKLNLEAWMTEA-KTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP 197 (239)
Q Consensus 143 LT~eER~~li~~vve~~-~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P 197 (239)
.+.++..+.++.+.+.. -...+.++.|+...+.++..++++.+.+.|++.+.+.+
T Consensus 133 ~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (216)
T smart00729 133 HTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFP 188 (216)
T ss_pred CCHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeee
Confidence 45689999999988764 11134466777878999999999999999999877765
No 408
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=67.31 E-value=87 Score=28.84 Aligned_cols=89 Identities=10% Similarity=0.025 Sum_probs=59.1
Q ss_pred HHhhhcCCCCEEEeccccCCcCCC-HHHHHHHHHHHHHHhcCCC-ceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMT-TAERKLNLEAWMTEAKTHG-FTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPE 198 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT-~eER~~li~~vve~~~G~r-vpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP 198 (239)
++...+...-+++.-+-+..-.+. .++-...++.+++.. + +||++..-+... ++.++.|.+.|++.||+=.-
T Consensus 33 i~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~vpv~lhlDH~~~---~e~i~~ai~~Gf~sVmid~s 106 (282)
T TIGR01859 33 LEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERM---SIVPVALHLDHGSS---YESCIKAIKAGFSSVMIDGS 106 (282)
T ss_pred HHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHC---CCCeEEEECCCCCC---HHHHHHHHHcCCCEEEECCC
Confidence 344445555566666666665555 566666666666654 5 899998865543 56778888999999999865
Q ss_pred CCCCCCCHHHHHHHHHHHHhh
Q psy9602 199 LFFTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 199 ~y~~~~s~e~iv~yf~~Vaea 219 (239)
.. +.++.++..+.+.+-
T Consensus 107 ~l----~~~eni~~t~~v~~~ 123 (282)
T TIGR01859 107 HL----PFEENLALTKKVVEI 123 (282)
T ss_pred CC----CHHHHHHHHHHHHHH
Confidence 42 557677666666643
No 409
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=67.26 E-value=80 Score=26.99 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEec-CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQI-GGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPA 222 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGV-g~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatpd 222 (239)
+..-+.+++.-+.+.+..++..+++.. ...+.+.-.+..+.....++|++++.|.. .....+.++.+.+ +
T Consensus 9 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~------~~~~~~~l~~~~~---~ 79 (271)
T cd06314 9 ASPFWKIAEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPID------PKAVIPALNKAAA---G 79 (271)
T ss_pred CcHHHHHHHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC------hhHhHHHHHHHhc---C
Confidence 344456666666555544356676654 44477778888888999999999999633 1223344555533 5
Q ss_pred CcEEEEeCC
Q psy9602 223 TPLFYYHIP 231 (239)
Q Consensus 223 LPIiLYN~P 231 (239)
+|+++.+.+
T Consensus 80 ipvV~~~~~ 88 (271)
T cd06314 80 IKLITTDSD 88 (271)
T ss_pred CCEEEecCC
Confidence 899999875
No 410
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=67.09 E-value=72 Score=29.01 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHH--HHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCC
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQE--VVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAP 221 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~e--AIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatp 221 (239)
+.++-.++++.+.+.. - ++|+++-...+.... .=++.+.+.++|+|++++.. . ..++..+|++.+.+ .
T Consensus 72 ~~~~~~~~~~~~r~~~-~-~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipD-----L-p~ee~~~~~~~~~~-~- 141 (258)
T PRK13111 72 TLADVFELVREIREKD-P-TIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPD-----L-PPEEAEELRAAAKK-H- 141 (258)
T ss_pred CHHHHHHHHHHHHhcC-C-CCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECC-----C-CHHHHHHHHHHHHH-c-
Confidence 4455566666666321 1 578776555554322 22467788888999998842 2 44777777776655 4
Q ss_pred CCcEEEEeCCCC
Q psy9602 222 ATPLFYYHIPMF 233 (239)
Q Consensus 222 dLPIiLYN~P~~ 233 (239)
++..|..=.|..
T Consensus 142 gl~~I~lvap~t 153 (258)
T PRK13111 142 GLDLIFLVAPTT 153 (258)
T ss_pred CCcEEEEeCCCC
Confidence 677776655543
No 411
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=67.00 E-value=35 Score=29.39 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
-..+++.+.+.+ .+||++|-+=.+.+++-++. +.|||.+++....
T Consensus 61 ~~~~i~~i~~~~---~~pv~~~GgI~~~e~~~~~~----~~Gad~vvigs~~ 105 (234)
T cd04732 61 NLELIEEIVKAV---GIPVQVGGGIRSLEDIERLL----DLGVSRVIIGTAA 105 (234)
T ss_pred CHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHH----HcCCCEEEECchH
Confidence 366777777766 47999988877766654444 5899999887544
No 412
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=66.84 E-value=52 Score=29.20 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=52.9
Q ss_pred hcCCCCEE---EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602 125 MAPIIDQM---VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF 201 (239)
Q Consensus 125 ~~gg~glv---V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~ 201 (239)
++...+++ ++|.+|. .+ .++-.+.++.+.+... +.||++|-|=.+.++ ++.+.++|||++++-.-.+-
T Consensus 149 ~~~~~~~l~msv~~~~g~--~~-~~~~~~~i~~lr~~~~--~~~i~v~gGI~~~e~----i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 149 SKLSPLFIYYGLRPATGV--PL-PVSVERNIKRVRNLVG--NKYLVVGFGLDSPED----ARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred HHhCCCEEEEEeCCCCCC--Cc-hHHHHHHHHHHHHhcC--CCCEEEeCCcCCHHH----HHHHHHcCCCEEEECHHHHH
Confidence 34455654 5556675 33 2333445555555553 358888877655443 44556789999999964331
Q ss_pred ---CCCCHHHHHHHHHHHHhhC
Q psy9602 202 ---TPASVEDLVDYLRDVGEAA 220 (239)
Q Consensus 202 ---~~~s~e~iv~yf~~Vaeat 220 (239)
.. +.+++.++.+.+..+.
T Consensus 220 ~~~~~-~~~~~~~~~~~~~~~~ 240 (244)
T PRK13125 220 ELEKN-GVESALNLLKKIRGAL 240 (244)
T ss_pred HHHhc-CHHHHHHHHHHHHHHh
Confidence 12 4578888888887665
No 413
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=66.83 E-value=93 Score=27.73 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceE----EEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q psy9602 143 MTTAERKLNLEAWMTEAKTHGFTV----MVQIGGTCFQEVVELAKHAESLNVHAVLC 195 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G~rvpV----IaGVg~~St~eAIelar~A~~aGAdaVlV 195 (239)
-+.+++.+.++.+.+. +++| |+|. ..+.++.++.++.+.++|++.+-+
T Consensus 155 ~s~~~~~~ai~~l~~~----Gi~v~~~~i~Gl-~et~~d~~~~~~~l~~l~~~~i~l 206 (296)
T TIGR00433 155 HTYDDRVDTLENAKKA----GLKVCSGGIFGL-GETVEDRIGLALALANLPPESVPI 206 (296)
T ss_pred CCHHHHHHHHHHHHHc----CCEEEEeEEEeC-CCCHHHHHHHHHHHHhCCCCEEEe
Confidence 4778888888888764 3454 7788 668999999999999999997743
No 414
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=66.28 E-value=47 Score=27.84 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=37.1
Q ss_pred eccccCCcCCCHHHHHHHHHHHHHHhcCC--CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHH
Q psy9602 134 NGTTGEGVSMTTAERKLNLEAWMTEAKTH--GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLV 210 (239)
Q Consensus 134 ~GstGE~~sLT~eER~~li~~vve~~~G~--rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv 210 (239)
.|.+|+.+.-..- +-++.+.+..+.. .+|++++- +-+. +.++.+.+.|+|++.+....+..+ +.++..
T Consensus 137 ~g~tg~~~~~~~~---~~i~~i~~~~~~~~~~~~i~v~G-GI~~----env~~l~~~gad~iivgsai~~~~-d~~~~~ 206 (210)
T TIGR01163 137 PGFGGQKFIPDTL---EKIREVRKMIDENGLSILIEVDG-GVND----DNARELAEAGADILVAGSAIFGAD-DYKEVI 206 (210)
T ss_pred CCCCcccccHHHH---HHHHHHHHHHHhcCCCceEEEEC-CcCH----HHHHHHHHcCCCEEEEChHHhCCC-CHHHHH
Confidence 3678863322222 2334344433320 36775522 2333 335666688999999998877554 544443
No 415
>TIGR03571 lucif_BA3436 luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB|2B81.
Probab=66.25 E-value=46 Score=30.52 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHHh--cCCCceEEEecC------------------CCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602 143 MTTAERKLNLEAWMTEA--KTHGFTVMVQIG------------------GTCFQEVVELAKHAESLNVHAVLCLPELFFT 202 (239)
Q Consensus 143 LT~eER~~li~~vve~~--~G~rvpVIaGVg------------------~~St~eAIelar~A~~aGAdaVlV~PP~y~~ 202 (239)
.+.++..+.++.+.+.+ .+ .-|+..++. ..+.++..+.++...++|++.+++.++....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~aG~~~~~l~~~~~~~ 281 (298)
T TIGR03571 203 RPPETQRARIDEWREAVASGG-FKPFGQSMHLDLSEDPDEPPTPIRLGYRTGRNALIELLDALREAGVNHVALNLRPSRR 281 (298)
T ss_pred CCHHHHHHHHHHHHHHHhccC-CCCceeEEEEeccCCCCCcccccccCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 45677776766666554 32 233322111 1246788899999999999999998764222
Q ss_pred CCCHHHHHHHHHHHHhhC
Q psy9602 203 PASVEDLVDYLRDVGEAA 220 (239)
Q Consensus 203 ~~s~e~iv~yf~~Vaeat 220 (239)
+ ..++++.+++..
T Consensus 282 --~---~~~~~~~~~~ev 294 (298)
T TIGR03571 282 --P---AAEVLDELAEEV 294 (298)
T ss_pred --C---HHHHHHHHHHHh
Confidence 2 334566666654
No 416
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=66.24 E-value=38 Score=32.06 Aligned_cols=94 Identities=14% Similarity=0.004 Sum_probs=54.4
Q ss_pred EEeccccCCcCCCHHHHHHHHHHHHHHh-cCCCceEEEecCCCC---HHHHHHHHHHHHhCCCCEEEECC-CCCCCCCCH
Q psy9602 132 MVNGTTGEGVSMTTAERKLNLEAWMTEA-KTHGFTVMVQIGGTC---FQEVVELAKHAESLNVHAVLCLP-ELFFTPASV 206 (239)
Q Consensus 132 vV~GstGE~~sLT~eER~~li~~vve~~-~G~rvpVIaGVg~~S---t~eAIelar~A~~aGAdaVlV~P-P~y~~~~s~ 206 (239)
++||-+||-+.-..-.-..+.+..- .. +| ..-+|++++..+ .+-+-.++..+...|++-.++.| |.|..+
T Consensus 140 VINa~~~~HPtQaLaDl~Ti~e~~g-~~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~--- 214 (335)
T PRK04523 140 VINMETITHPCQELAHALALQEHFG-TTLRG-KKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILD--- 214 (335)
T ss_pred EEECCCCCChHHHHHHHHHHHHHhC-CccCC-CEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCC---
Confidence 6777777555443333333333321 23 34 223345776542 45667778888899999999998 766444
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 207 EDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 207 e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+++++--+++++.. +..+.+.+.|
T Consensus 215 ~~~~~~~~~~~~~~-g~~~~~~~d~ 238 (335)
T PRK04523 215 ERYMDWAEQNAAES-GGSLTVSHDI 238 (335)
T ss_pred HHHHHHHHHHHHHc-CCeEEEEcCH
Confidence 55555555555555 4555555544
No 417
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=66.24 E-value=72 Score=32.32 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=60.8
Q ss_pred hhcCCCCEEEeccccCCcCCCHHHHHHHHH-----------HHHH-------HhcCCCceEEEecCCCCHHHHHHHHHHH
Q psy9602 124 RMAPIIDQMVNGTTGEGVSMTTAERKLNLE-----------AWMT-------EAKTHGFTVMVQIGGTCFQEVVELAKHA 185 (239)
Q Consensus 124 ~~~gg~glvV~GstGE~~sLT~eER~~li~-----------~vve-------~~~G~rvpVIaGVg~~St~eAIelar~A 185 (239)
.+..|.-+.+-|..|+.+.=..+|-.+-.+ .... ..+|.++.|+++++. . +-+..+
T Consensus 210 ~~~~G~~v~vDg~~G~v~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~dg~~i~v~aNi~~--~----~d~~~~ 283 (565)
T TIGR01417 210 QVKNGDTVIIDGVKGIVIFNPSSETIDKYEAKQEAVSSEKAELAKLKDKPAITLDGHQVELAANIGT--V----DDVEGA 283 (565)
T ss_pred hCCCCCEEEEECCCCEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCCCceEEEEecCCC--H----HHHHHH
Confidence 345566678999999987654433221111 0011 113324455555543 3 345778
Q ss_pred HhCCCCEEEECCCCC------CCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 186 ESLNVHAVLCLPELF------FTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 186 ~~aGAdaVlV~PP~y------~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
.+.||++|-+.=-=| -.| ++++-+..|+.++++..+.||++
T Consensus 284 ~~~ga~GiGL~RtEfl~l~~~~~P-~e~eq~~~y~~i~~~~~~~pv~i 330 (565)
T TIGR01417 284 ERNGGEGIGLFRTEFLYMSRDQLP-TEEEQFAAYKTVLEAMESDAVIV 330 (565)
T ss_pred HhCCCCEEEeeechHhhhCCCCCC-CHHHHHHHHHHHHHHhCCCceEE
Confidence 888999997764221 134 88999999999999988899876
No 418
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=66.23 E-value=79 Score=32.15 Aligned_cols=97 Identities=16% Similarity=0.104 Sum_probs=67.4
Q ss_pred hHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCC---------CCHHHHHHHHHHHHhCCC
Q psy9602 120 GITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGG---------TCFQEVVELAKHAESLNV 190 (239)
Q Consensus 120 ~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~---------~St~eAIelar~A~~aGA 190 (239)
.++...+++++++++-|. -+.+|-+.+++.+.+.. .+|+|++++. .+.+++++.+. +.|+
T Consensus 130 ~~~~l~~~gvD~l~~ET~-----~~~~Ea~a~~~a~~~~~---~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~---~~~~ 198 (612)
T PRK08645 130 QIDALLEEGVDGLLLETF-----YDLEELLLALEAAREKT---DLPIIAQVAFHEDGVTQNGTSLEEALKELV---AAGA 198 (612)
T ss_pred HHHHHHhcCCCEEEEEcc-----CCHHHHHHHHHHHHHhC---CCcEEEEEEECCCCeeCCCCCHHHHHHHHH---hCCC
Confidence 355556888888877654 46788888888776542 3799987653 23566666663 4678
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Q psy9602 191 HAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMF 233 (239)
Q Consensus 191 daVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~ 233 (239)
+++.+-= .. .++.+....+.+...+ +.|+++|-|...
T Consensus 199 ~avGiNC---~~--~p~~~~~~l~~l~~~~-~~pl~vypNaG~ 235 (612)
T PRK08645 199 DVVGLNC---GL--GPYHMLEALERIPIPE-NAPLSAYPNAGL 235 (612)
T ss_pred CEEEecC---CC--CHHHHHHHHHHHHhcc-CceEEEEECCCC
Confidence 8877652 11 2578888888887777 799999988543
No 419
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=66.22 E-value=61 Score=28.81 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+.++++-+.+.+...+..+++.....+.+...+..+.....++|++++.+.. . ++ +. ++.+.+ . ++|+++
T Consensus 78 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~~---~-~~-~~---~~~l~~-~-~iPvV~ 147 (331)
T PRK14987 78 FAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERT---H-TP-RT---LKMIEV-A-GIPVVE 147 (331)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCC---C-CH-HH---HHHHHh-C-CCCEEE
Confidence 3445555444443324566665555555555566667777888998887532 1 22 22 233433 4 688887
Q ss_pred E
Q psy9602 228 Y 228 (239)
Q Consensus 228 Y 228 (239)
.
T Consensus 148 ~ 148 (331)
T PRK14987 148 L 148 (331)
T ss_pred E
Confidence 5
No 420
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=66.05 E-value=43 Score=32.14 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=51.1
Q ss_pred EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
-|......+.+.+...++.|++.++..+|-..|........+.+..+.+.+++.+++.||.|+--
T Consensus 19 aV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLD 83 (347)
T PRK13399 19 GVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQD 83 (347)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 34456677889999999999999999999988865443356788899999998874489998754
No 421
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=65.93 E-value=27 Score=32.38 Aligned_cols=88 Identities=10% Similarity=0.026 Sum_probs=59.1
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
++..-+-..-+++..+-|+.-.+..+....+++.+++.. ++||.+..-+... .+.++.|.++|++.||+=-...
T Consensus 35 i~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~---~VPValHLDH~~~---~e~i~~ai~~GftSVM~DgS~l 108 (284)
T PRK12857 35 VAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKA---SVPVALHLDHGTD---FEQVMKCIRNGFTSVMIDGSKL 108 (284)
T ss_pred HHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHC---CCCEEEECCCCCC---HHHHHHHHHcCCCeEEEeCCCC
Confidence 334444556677777777776677777667777777654 6999999887654 3567788889999999986542
Q ss_pred CCCCCHHHHHHHHHHHHh
Q psy9602 201 FTPASVEDLVDYLRDVGE 218 (239)
Q Consensus 201 ~~~~s~e~iv~yf~~Vae 218 (239)
+-++=++.-+++.+
T Consensus 109 ----p~eeNi~~T~~vv~ 122 (284)
T PRK12857 109 ----PLEENIALTKKVVE 122 (284)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 33544444444443
No 422
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=65.90 E-value=55 Score=33.56 Aligned_cols=97 Identities=11% Similarity=0.076 Sum_probs=65.5
Q ss_pred HHhhhcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEE-----ecCCCCHHHHHHHHHHHHhCCCCEEE
Q psy9602 121 ITLRMAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMV-----QIGGTCFQEVVELAKHAESLNVHAVL 194 (239)
Q Consensus 121 v~~~~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIa-----GVg~~St~eAIelar~A~~aGAdaVl 194 (239)
+....+.|.+++ ++= .|++-+-.+..-.++...+. .+.. +.--.+.+..+++++.+.++|||.+.
T Consensus 102 v~~a~~~Gidv~Rifd------~lnd~~n~~~~i~~~k~~G~---~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~ 172 (596)
T PRK14042 102 VKLAVNNGVDVFRVFD------ALNDARNLKVAIDAIKSHKK---HAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIA 172 (596)
T ss_pred HHHHHHcCCCEEEEcc------cCcchHHHHHHHHHHHHcCC---EEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 455567788776 553 34444433332223333322 2222 22346789999999999999999988
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 195 CLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 195 V~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
+-...... ++.++.+.+++|-++. ++||-++-
T Consensus 173 IkDtaG~l--~P~~v~~lv~alk~~~-~ipi~~H~ 204 (596)
T PRK14042 173 IKDMAGLL--TPTVTVELYAGLKQAT-GLPVHLHS 204 (596)
T ss_pred eCCcccCC--CHHHHHHHHHHHHhhc-CCEEEEEe
Confidence 88766532 7899999999999998 79987654
No 423
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=65.70 E-value=27 Score=33.86 Aligned_cols=74 Identities=16% Similarity=0.089 Sum_probs=41.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhh
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaea 219 (239)
..||.+.-..|.+ .. ++|||+ || .+ .+-++.|.++|+|+|.|...-.-..-..-..+.-..++.++
T Consensus 238 ~~~tW~~i~~lr~----~~---~~pvivKgV--~~----~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~ 304 (383)
T cd03332 238 PSLTWEDLAFLRE----WT---DLPIVLKGI--LH----PDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEA 304 (383)
T ss_pred CCCCHHHHHHHHH----hc---CCCEEEecC--CC----HHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHH
Confidence 4577765444444 43 369888 56 33 45566888899999999964321110111123334455554
Q ss_pred CC-CCcEEE
Q psy9602 220 AP-ATPLFY 227 (239)
Q Consensus 220 tp-dLPIiL 227 (239)
++ ++||++
T Consensus 305 ~~~~~~vi~ 313 (383)
T cd03332 305 VGDRLTVLF 313 (383)
T ss_pred hcCCCeEEE
Confidence 42 478765
No 424
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=65.66 E-value=55 Score=29.55 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-CHHH----HHHHHHHHHhhCC--CCcEEEEeCC
Q psy9602 174 CFQEVVELAKHAESLNVHAVLCLPELFFTPA-SVED----LVDYLRDVGEAAP--ATPLFYYHIP 231 (239)
Q Consensus 174 St~eAIelar~A~~aGAdaVlV~PP~y~~~~-s~e~----iv~yf~~Vaeatp--dLPIiLYN~P 231 (239)
-++..+++++...++|++.+.+.-|...... +++. +..|++.+.+... +.|++++.+-
T Consensus 166 i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG 230 (330)
T cd03465 166 CTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCG 230 (330)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECC
Confidence 4667788888888899999999988753322 5543 3455566666642 4788988874
No 425
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=65.43 E-value=56 Score=29.77 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=55.3
Q ss_pred eccccCCcCCCHHHHHHHHHHHHHHhcC-C--CceEEEecCCCCH-------------HHHHHHHHHHHhCCCCEEEECC
Q psy9602 134 NGTTGEGVSMTTAERKLNLEAWMTEAKT-H--GFTVMVQIGGTCF-------------QEVVELAKHAESLNVHAVLCLP 197 (239)
Q Consensus 134 ~GstGE~~sLT~eER~~li~~vve~~~G-~--rvpVIaGVg~~St-------------~eAIelar~A~~aGAdaVlV~P 197 (239)
.|..|=+...|..+..+.+...+....| . ...++..+..... +-.++.++.-+++|||.+++..
T Consensus 4 iGilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~ 83 (230)
T COG1794 4 IGILGGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERAGADFIVLPT 83 (230)
T ss_pred eEeccCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3455556666777777666666655444 1 3345555555444 3345567777889999999874
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 198 ELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 198 P~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
..+..||.+|-.++ ++|++
T Consensus 84 ---------NT~H~~~d~iq~~~-~iPll 102 (230)
T COG1794 84 ---------NTMHKVADDIQKAV-GIPLL 102 (230)
T ss_pred ---------CcHHHHHHHHHHhc-CCCee
Confidence 23678899999999 89986
No 426
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=65.43 E-value=75 Score=29.56 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHh
Q psy9602 108 AGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAES 187 (239)
Q Consensus 108 A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~ 187 (239)
||-....+++..-++..-+-..-+++..+.|..-.+..+....+++.+++.. ++||.+..-+... .+.++.|.+
T Consensus 22 AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~---~VPValHLDHg~~---~e~i~~ai~ 95 (286)
T PRK12738 22 AFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTY---NMPLALHLDHHES---LDDIRRKVH 95 (286)
T ss_pred EEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC---CCCEEEECCCCCC---HHHHHHHHH
Confidence 3333333333233444455566677777778877788888888888888765 6999999877654 556777889
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHh
Q psy9602 188 LNVHAVLCLPELFFTPASVEDLVDYLRDVGE 218 (239)
Q Consensus 188 aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vae 218 (239)
+|++.||+=-..+ +.++=++.-+++.+
T Consensus 96 ~GFtSVM~DgS~l----p~eeNi~~T~evv~ 122 (286)
T PRK12738 96 AGVRSAMIDGSHF----PFAENVKLVKSVVD 122 (286)
T ss_pred cCCCeEeecCCCC----CHHHHHHHHHHHHH
Confidence 9999999986542 34555555554444
No 427
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=65.36 E-value=57 Score=30.16 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=40.8
Q ss_pred CceEEEe--c-CCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC--C-----CCHHHHHHHHHHHHhh
Q psy9602 163 GFTVMVQ--I-GGTCFQEVVELAKHAESLNVHAVLCLPELFFT--P-----ASVEDLVDYLRDVGEA 219 (239)
Q Consensus 163 rvpVIaG--V-g~~St~eAIelar~A~~aGAdaVlV~PP~y~~--~-----~s~e~iv~yf~~Vaea 219 (239)
+++|.+. + ...+.++..++++.+.++|++.+.+.|-+.+. + .+.++..+.|+.+.+.
T Consensus 162 G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 162 GFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccccccccccccCHHHHHHHHHHHHhh
Confidence 3555443 3 46789999999999999999999997643222 1 1567778888887653
No 428
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=65.33 E-value=21 Score=33.16 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCCceEEE--ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q psy9602 150 LNLEAWMTEAKTHGFTVMV--QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVG 217 (239)
Q Consensus 150 ~li~~vve~~~G~rvpVIa--GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Va 217 (239)
+-.+.+++.+ .+||++ |-..++.+++++....|.++||.++.+-=-.|..+ .++.+.+-+.+|.
T Consensus 192 e~F~~vv~~~---~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~-~p~~m~~Ai~~Iv 257 (265)
T COG1830 192 ESFRRVVAAC---GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHE-DPEAMVKAIQAIV 257 (265)
T ss_pred HHHHHHHHhC---CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccC-ChHHHHHHHHHHh
Confidence 3344555555 468776 44455999999999999999999999998888888 8888776666654
No 429
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=65.24 E-value=32 Score=29.80 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=49.7
Q ss_pred EecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 168 VQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 168 aGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+-+...+.++.+..++.+...|+|+|=+--=++... +.+.+.+.+..|.+.+ ++|+|+=.-+
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~-~~~~~~~~l~~lr~~~-~~piI~T~R~ 63 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLDYLEND-SAEDISEQLAELRRSL-DLPIIFTVRT 63 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTT-SHHHHHHHHHHHHHHC-TSEEEEE--B
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEecccccc-ChHHHHHHHHHHHHhC-CCCEEEEecc
Confidence 446678999999999999999999999987666555 7899999999999999 8999986554
No 430
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=65.22 E-value=55 Score=30.11 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC--------------CCCCCHHHH
Q psy9602 144 TTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF--------------FTPASVEDL 209 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y--------------~~~~s~e~i 209 (239)
|.++..+.++.+.+.--...+-+|+|.-..+.++.++.++.+.+++++.+-+.+=+. +.+.+.++.
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~ 240 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEY 240 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHH
Confidence 667888888887765111145678899899999999999999999999888765221 122266777
Q ss_pred HHHHHHHHhhCCCCcEEEEe
Q psy9602 210 VDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 210 v~yf~~VaeatpdLPIiLYN 229 (239)
++....+.+.. +..++|+.
T Consensus 241 ~~~~~~~l~~l-~~~~~i~R 259 (302)
T TIGR01212 241 ISLACDFLEHL-PPEVVIHR 259 (302)
T ss_pred HHHHHHHHHhC-CcCeEEEE
Confidence 77777777777 34466654
No 431
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=64.97 E-value=58 Score=29.26 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=52.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCc
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~T 234 (239)
+..|++-+.+.+.++.++.++.+.+.|||.+=+=--++-...+.+.+..-...+.+..+++|+|+=.-+..-
T Consensus 15 ~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~e 86 (253)
T PRK02412 15 APKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKE 86 (253)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhh
Confidence 456677888999999999999999999999977655442211456677777777776657899986665543
No 432
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=64.91 E-value=9.1 Score=35.46 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602 150 LNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT 202 (239)
Q Consensus 150 ~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~ 202 (239)
+++..+.+.+.+ ++|||..=|=.+-++++++. .+||++|++....++.
T Consensus 229 ~~v~~~~~~~~~-~ipIig~GGI~s~~da~e~i----~aGA~~Vqv~ta~~~~ 276 (310)
T PRK02506 229 ANVRAFYQRLNP-SIQIIGTGGVKTGRDAFEHI----LCGASMVQVGTALHKE 276 (310)
T ss_pred HHHHHHHHhcCC-CCCEEEECCCCCHHHHHHHH----HcCCCHHhhhHHHHHh
Confidence 344445555655 78988755667888999888 7899999999987763
No 433
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=64.78 E-value=37 Score=32.68 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=45.7
Q ss_pred CceEEEecCCCCH-----------------HHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcE
Q psy9602 163 GFTVMVQIGGTCF-----------------QEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPL 225 (239)
Q Consensus 163 rvpVIaGVg~~St-----------------~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPI 225 (239)
++|+=+||.+-|+ +-|++.++.+++.|++-+.+.-= .. +....++-|+.+++.+ |.|+
T Consensus 121 ~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~K---sS-dv~~~i~ayr~la~~~-dyPL 195 (346)
T TIGR00612 121 GKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMK---AS-DVAETVAAYRLLAERS-DYPL 195 (346)
T ss_pred CCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE---cC-CHHHHHHHHHHHHhhC-CCCc
Confidence 7999999988773 44677889999999998888731 12 6678899999999987 6443
No 434
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=64.72 E-value=40 Score=32.49 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=43.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhh
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaea 219 (239)
..||.++- +.+.+.. ++|||+ ||.+ .+-++.|.++|+|+|.|..--.-..-.--..+.-..++.++
T Consensus 209 ~~~tW~di----~wlr~~~---~~PiivKgV~~------~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~a 275 (367)
T PLN02493 209 RTLSWKDV----QWLQTIT---KLPILVKGVLT------GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKA 275 (367)
T ss_pred CCCCHHHH----HHHHhcc---CCCEEeecCCC------HHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHH
Confidence 46777663 3333443 579999 8853 67778899999999999864332210111123444445444
Q ss_pred C-CCCcEEE
Q psy9602 220 A-PATPLFY 227 (239)
Q Consensus 220 t-pdLPIiL 227 (239)
. +++||++
T Consensus 276 v~~~~~vi~ 284 (367)
T PLN02493 276 TQGRIPVFL 284 (367)
T ss_pred hCCCCeEEE
Confidence 3 2477654
No 435
>PRK04302 triosephosphate isomerase; Provisional
Probab=64.59 E-value=52 Score=28.68 Aligned_cols=62 Identities=18% Similarity=0.085 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHH
Q psy9602 143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVD 211 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~ 211 (239)
.+.++-.++++.+.+... ++||++|-+=.+ .+.++ .+.+.|+|++++-.-..-.+ +...+++
T Consensus 155 ~~~~~i~~~~~~ir~~~~--~~pvi~GggI~~-~e~~~---~~~~~gadGvlVGsa~l~~~-~~~~~~~ 216 (223)
T PRK04302 155 AKPEVVEDAVEAVKKVNP--DVKVLCGAGIST-GEDVK---AALELGADGVLLASGVVKAK-DPEAALR 216 (223)
T ss_pred CCHHHHHHHHHHHHhccC--CCEEEEECCCCC-HHHHH---HHHcCCCCEEEEehHHhCCc-CHHHHHH
Confidence 456666677777766443 589999865544 43333 34678999999986554333 4444444
No 436
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=64.58 E-value=38 Score=32.46 Aligned_cols=84 Identities=12% Similarity=0.104 Sum_probs=52.0
Q ss_pred HHHhhHHhhhcCCCCEEEecccc---------CCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCC------------
Q psy9602 116 MLLVGITLRMAPIIDQMVNGTTG---------EGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTC------------ 174 (239)
Q Consensus 116 ~l~~~v~~~~~gg~glvV~GstG---------E~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~S------------ 174 (239)
.++..+..+-.||.|+++.+.+. ....|..++...=++.+.+.+.....++++++.+.+
T Consensus 40 ~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~ 119 (363)
T COG1902 40 LLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPS 119 (363)
T ss_pred HHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCc
Confidence 33455666677889965443322 556677777666666666655443456666543333
Q ss_pred ------------------------H----HHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 175 ------------------------F----QEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 175 ------------------------t----~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
+ ++=.+-|+.|+++|+|+|-|..-+
T Consensus 120 ~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~Ah 172 (363)
T COG1902 120 AVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAH 172 (363)
T ss_pred ccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 1 222346788999999999987766
No 437
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=64.56 E-value=53 Score=29.63 Aligned_cols=91 Identities=12% Similarity=0.115 Sum_probs=50.0
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec-CCCCHHHHHHHHHHHHhC--CCCEEEECC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI-GGTCFQEVVELAKHAESL--NVHAVLCLP 197 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV-g~~St~eAIelar~A~~a--GAdaVlV~P 197 (239)
+...++.+..+++ |++| +|.+|..++.+.+.+ . ++|++.+. .+.+..-..++++.|.+. ++|.=++--
T Consensus 85 ~~~al~~g~~vVi-gttg----~~~e~~~~l~~aA~~--~--g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~dieI~E~ 155 (266)
T TIGR00036 85 LKFALEHGVRLVV-GTTG----FSEEDKQELADLAEK--A--GIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEIIEL 155 (266)
T ss_pred HHHHHHCCCCEEE-ECCC----CCHHHHHHHHHHHhc--C--CccEEEECcccHHHHHHHHHHHHHHHhccCCCEEeeee
Confidence 4445666655554 4566 578877777666443 1 47877743 466666666777766663 233333333
Q ss_pred CCCCCC-CCHHHHHHHHHHHHhhC
Q psy9602 198 ELFFTP-ASVEDLVDYLRDVGEAA 220 (239)
Q Consensus 198 P~y~~~-~s~e~iv~yf~~Vaeat 220 (239)
-|-.+. ......+.-.+.|++.-
T Consensus 156 HH~~K~DaPSGTA~~l~~~i~~~~ 179 (266)
T TIGR00036 156 HHRHKKDAPSGTALKTAEMIAEAR 179 (266)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHhh
Confidence 222232 12345556666666653
No 438
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=64.46 E-value=1.3e+02 Score=28.29 Aligned_cols=81 Identities=10% Similarity=0.085 Sum_probs=51.1
Q ss_pred hhHHhhhcCCCCEEEeccc-----cC----CcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCC----------------
Q psy9602 119 VGITLRMAPIIDQMVNGTT-----GE----GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT---------------- 173 (239)
Q Consensus 119 ~~v~~~~~gg~glvV~Gst-----GE----~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~---------------- 173 (239)
..++.+-++|.|+++.|.+ |- ...|..++...-++.+++.+.....++++++.+.
T Consensus 37 ~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~p 116 (343)
T cd04734 37 AYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAP 116 (343)
T ss_pred HHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCC
Confidence 3455666788888765533 11 2346677777777777776655456777775421
Q ss_pred ---------------C-------HHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 174 ---------------C-------FQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 174 ---------------S-------t~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
+ .++-++-|+.|+++|+|+|-+---+
T Consensus 117 s~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ah 164 (343)
T cd04734 117 SAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAH 164 (343)
T ss_pred CCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 1 1233446778888999999887643
No 439
>PRK06267 hypothetical protein; Provisional
Probab=64.39 E-value=63 Score=30.42 Aligned_cols=82 Identities=15% Similarity=0.160 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEE--CCCCCCC------CCCHHHHHHHHH
Q psy9602 143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLC--LPELFFT------PASVEDLVDYLR 214 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV--~PP~y~~------~~s~e~iv~yf~ 214 (239)
-+.+++.+.++.+.+..=....-+|+|. +.+.++..++++.+.+++++.+.+ +.|+... +.+++++++.+.
T Consensus 150 ~s~ed~~~~l~~ak~aGi~v~~g~IiGl-gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia 228 (350)
T PRK06267 150 KPLDKIKEMLLKAKDLGLKTGITIILGL-GETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVS 228 (350)
T ss_pred CCHHHHHHHHHHHHHcCCeeeeeEEEeC-CCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHH
Confidence 5789999999988765211124477886 668999999999999999997543 3344221 116666666665
Q ss_pred HHHhhCCCCcE
Q psy9602 215 DVGEAAPATPL 225 (239)
Q Consensus 215 ~VaeatpdLPI 225 (239)
..--..|+.+|
T Consensus 229 ~~Rl~lP~~~I 239 (350)
T PRK06267 229 SVRLNFPKIKI 239 (350)
T ss_pred HHHHHCCCCCc
Confidence 55444555555
No 440
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=64.34 E-value=12 Score=35.63 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEec----------------------------CCCCHHHHHHHHHHHHhCCCCEEEECC
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQI----------------------------GGTCFQEVVELAKHAESLNVHAVLCLP 197 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaGV----------------------------g~~St~eAIelar~A~~aGAdaVlV~P 197 (239)
+=|...|+.+.+..+-.+++||.=. --.+.++|+..+..=.+-|||.+||=|
T Consensus 171 DGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKP 250 (322)
T PRK13384 171 DGQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKP 250 (322)
T ss_pred ccHHHHHHHHHHHCCCCCCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcC
Confidence 5677777777776543256666421 123468888888888888999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 198 ELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 198 P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
-..| ++-.+.+.+.+ ++|+..||..+
T Consensus 251 al~Y--------LDIi~~~k~~~-~lPvaaYqVSG 276 (322)
T PRK13384 251 GTPY--------LDVLSRLRQET-HLPLAAYQVGG 276 (322)
T ss_pred CchH--------HHHHHHHHhcc-CCCEEEEEchH
Confidence 5433 34556677777 89999999753
No 441
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=64.33 E-value=50 Score=31.86 Aligned_cols=83 Identities=7% Similarity=-0.031 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC----------------CH
Q psy9602 143 MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA----------------SV 206 (239)
Q Consensus 143 LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~----------------s~ 206 (239)
+|-++-.++++.+.+. + --|..+...+.+.+...++.|++.....++-..|...+.. ..
T Consensus 10 ~~~~~~~~lL~~A~~~----~-yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~ 84 (357)
T TIGR01520 10 ITGDDVHKLFQYAKEN----N-FAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGA 84 (357)
T ss_pred cCHHHHHHHHHHHHHC----C-ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhH
Confidence 5678888888887663 2 2344566778899999999999999999998887532210 12
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 207 EDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 207 e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
..+..+.+.+++.+ +.||.|+---
T Consensus 85 ~~~~~~v~~~Ae~a-~VPValHLDH 108 (357)
T TIGR01520 85 IAGAHHVHSIAEHY-GVPVVLHTDH 108 (357)
T ss_pred HHHHHHHHHHHHHC-CCCEEEECCC
Confidence 34888999999999 8999997543
No 442
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=64.18 E-value=70 Score=29.77 Aligned_cols=90 Identities=14% Similarity=0.067 Sum_probs=61.1
Q ss_pred HhhhcCCCCEEEeccccCCcCCC-HHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 122 TLRMAPIIDQMVNGTTGEGVSMT-TAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 122 ~~~~~gg~glvV~GstGE~~sLT-~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
+..-+-..-+++.-+.|+.-.+. .+.-..+++.+.+...- .+||.+..-+... .+.++.|.++|++.||+=-.++
T Consensus 36 ~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~vPV~lHLDHg~~---~e~i~~ai~~GftSVM~DgS~l 111 (286)
T PRK08610 36 EASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNI-TIPVAIHLDHGSS---FEKCKEAIDAGFTSVMIDASHS 111 (286)
T ss_pred HHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC-CCCEEEECCCCCC---HHHHHHHHHcCCCEEEEeCCCC
Confidence 33444555677777777776655 66677777777776542 3899999987664 5555778999999999986552
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q psy9602 201 FTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 201 ~~~~s~e~iv~yf~~Vaea 219 (239)
+.++=++.-+.+.+-
T Consensus 112 ----~~eeNi~~T~~vve~ 126 (286)
T PRK08610 112 ----PFEENVATTKKVVEY 126 (286)
T ss_pred ----CHHHHHHHHHHHHHH
Confidence 445555555555443
No 443
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=64.15 E-value=37 Score=28.52 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHH
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDV 216 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~V 216 (239)
.+.++.+.+..+ .+||++- |+-+. +.+..+.++||+++.+..-.+..+ ++.+.+.-+...
T Consensus 148 ~~~~~~~~~~~~--~~~v~a~-GGI~~----~~i~~~~~~Ga~gv~~gs~i~~~~-d~~~~~~~l~~~ 207 (212)
T PRK00043 148 LEGLREIRAAVG--DIPIVAI-GGITP----ENAPEVLEAGADGVAVVSAITGAE-DPEAAARALLAA 207 (212)
T ss_pred HHHHHHHHHhcC--CCCEEEE-CCcCH----HHHHHHHHcCCCEEEEeHHhhcCC-CHHHHHHHHHHH
Confidence 344555555543 3787762 23233 456678889999999986555444 555555544443
No 444
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.07 E-value=68 Score=27.20 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=38.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+..+++.....+.+.-.++.+.....++|++++.|... ... .. .+ ... ++|+++.|.+
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~----~~~-~~----~~-~~~-~iPvV~~~~~ 86 (263)
T cd06280 29 GLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPTRA----TLR-RL----AE-LRL-SFPVVLIDRA 86 (263)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC----Cch-HH----HH-Hhc-CCCEEEECCC
Confidence 35666666666777666777888888999999987531 112 11 12 334 7999999875
No 445
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=64.04 E-value=74 Score=31.76 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=45.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHh-CCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAES-LNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~-aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
.++|+..-.-.+.+++.+..+.+.. ..+|+|++.-+-|. ++.+. -.+++.. +.||++++.|.
T Consensus 39 ~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs----~a~~~---i~~~~~l-~~PvL~~~~q~ 101 (484)
T cd03557 39 PVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTFS----PAKMW---IAGLTAL-QKPLLHLHTQF 101 (484)
T ss_pred CeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCCc----hHHHH---HHHHHHc-CCCEEEEccCC
Confidence 3667776667788888888888874 78999999876653 23222 2335667 89999999996
No 446
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=64.04 E-value=16 Score=38.02 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=47.2
Q ss_pred CceEEEecCCCCH--------HHHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 163 GFTVMVQIGGTCF--------QEVVELAKHAESLNVHAVLCLP-ELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 163 rvpVIaGVg~~St--------~eAIelar~A~~aGAdaVlV~P-P~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
+++||+=+--.|. .+..++++..++.||+++.|+. |.||.- +. ++++.+.+.+ ++||+--|+
T Consensus 49 ~~~vIaEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~G-s~----~~l~~vr~~v-~~PvLrKDF 119 (695)
T PRK13802 49 GIPVIAEIKRASPSKGHLSDIPDPAALAREYEQGGASAISVLTEGRRFLG-SL----DDFDKVRAAV-HIPVLRKDF 119 (695)
T ss_pred CCeEEEEeecCCCCCCcCCCCCCHHHHHHHHHHcCCcEEEEecCcCcCCC-CH----HHHHHHHHhC-CCCEEeccc
Confidence 3567665533332 3789999999999999999987 778877 54 6677788888 899987776
No 447
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=63.82 E-value=70 Score=28.56 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 148 RKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 148 R~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
..++++.+-+.+...+..+++.-+..+.+.- +..+...+.++||+++..+. . + .+++..+.+. ++|+++
T Consensus 16 f~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~~---~-~----~~~l~~~~~~--~iPvV~ 84 (279)
T PF00532_consen 16 FAEIIRGIEQEAREHGYQLLLCNTGDDEEKE-EYIELLLQRRVDGIILASSE---N-D----DEELRRLIKS--GIPVVL 84 (279)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETTTHHHH-HHHHHHHHTTSSEEEEESSS---C-T----CHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCchHHH-HHHHHHHhcCCCEEEEeccc---C-C----hHHHHHHHHc--CCCEEE
Confidence 3444444444443324566666666666666 99999999999999999432 2 2 2345555554 689999
Q ss_pred EeCCC
Q psy9602 228 YHIPM 232 (239)
Q Consensus 228 YN~P~ 232 (239)
.|.+.
T Consensus 85 ~~~~~ 89 (279)
T PF00532_consen 85 IDRYI 89 (279)
T ss_dssp ESS-S
T ss_pred EEecc
Confidence 99873
No 448
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=63.77 E-value=1e+02 Score=27.86 Aligned_cols=80 Identities=8% Similarity=-0.017 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHhcCC-CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCC
Q psy9602 144 TTAERKLNLEAWMTEAKTH-GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPA 222 (239)
Q Consensus 144 T~eER~~li~~vve~~~G~-rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaeatpd 222 (239)
+..=..++++-+.+.+... ...++...+..+.+...+..+.....++|++++.+... +....+++.+.+ . +
T Consensus 35 ~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~------~~~~~~l~~l~~-~-g 106 (330)
T PRK15395 35 DDNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP------AAAPTVIEKARG-Q-D 106 (330)
T ss_pred cchHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCH------HHHHHHHHHHHH-C-C
Confidence 3444445555555544431 24666645555666667788888888999999986321 112334555544 4 7
Q ss_pred CcEEEEeCC
Q psy9602 223 TPLFYYHIP 231 (239)
Q Consensus 223 LPIiLYN~P 231 (239)
+|++++|.+
T Consensus 107 iPvV~vd~~ 115 (330)
T PRK15395 107 VPVVFFNKE 115 (330)
T ss_pred CcEEEEcCC
Confidence 999999985
No 449
>KOG2367|consensus
Probab=63.75 E-value=50 Score=33.43 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhcCC---CceEEEecCC--------CC----HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHH
Q psy9602 146 AERKLNLEAWMTEAKTH---GFTVMVQIGG--------TC----FQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLV 210 (239)
Q Consensus 146 eER~~li~~vve~~~G~---rvpVIaGVg~--------~S----t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv 210 (239)
.=|...++.++|+..+. ++.++.+++. .| ++-|++.++++.++|.-.+-..|--++.. ..+.++
T Consensus 129 rc~~~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~rs-e~~fl~ 207 (560)
T KOG2367|consen 129 RCHMDDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGRS-ELEFLL 207 (560)
T ss_pred ccchHHHHHHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECccccccC-cHHHHH
Confidence 34677888888887763 2555555542 23 34455667888889998888888888777 788899
Q ss_pred HHHHHHHhhCCCCcEEEEeCCCCccccCC
Q psy9602 211 DYLRDVGEAAPATPLFYYHIPMFTRVTLK 239 (239)
Q Consensus 211 ~yf~~VaeatpdLPIiLYN~P~~TG~~Ls 239 (239)
+-|+++-.+ +.|- +|.|...|+..+
T Consensus 208 eI~~aV~Ka--g~~t--vnipdTVgia~P 232 (560)
T KOG2367|consen 208 EILGAVIKA--GVTT--VNIPDTVGIATP 232 (560)
T ss_pred HHHHHHHHh--CCcc--ccCcceecccCh
Confidence 999999876 4666 889987777653
No 450
>PLN02979 glycolate oxidase
Probab=63.74 E-value=44 Score=32.37 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=43.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhh
Q psy9602 141 VSMTTAERKLNLEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 141 ~sLT~eER~~li~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaea 219 (239)
..||.++- +.+.+.. ++|||+ ||.+ .+-++.|.++|+|++.|..--.-..-.--..+.-..++.++
T Consensus 208 ~~ltW~dl----~wlr~~~---~~PvivKgV~~------~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~ 274 (366)
T PLN02979 208 RTLSWKDV----QWLQTIT---KLPILVKGVLT------GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKA 274 (366)
T ss_pred CCCCHHHH----HHHHhcc---CCCEEeecCCC------HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHH
Confidence 46888763 3333443 579999 7742 56677899999999999874332210001123344444444
Q ss_pred C-CCCcEEE
Q psy9602 220 A-PATPLFY 227 (239)
Q Consensus 220 t-pdLPIiL 227 (239)
. +++||++
T Consensus 275 ~~~~~~Vi~ 283 (366)
T PLN02979 275 TQGRIPVFL 283 (366)
T ss_pred hCCCCeEEE
Confidence 3 2477664
No 451
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=63.62 E-value=19 Score=33.66 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=49.7
Q ss_pred ceEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEC------CCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 164 FTVMV-QIGGTCFQEVVELAKHAESLNVHAVLCL------PELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 164 vpVIa-GVg~~St~eAIelar~A~~aGAdaVlV~------PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
.-||+ .++-+|-+..++.|+..+++||+.+--- .||-|+. -.++-+.|.+.+++.+ ++|++-
T Consensus 46 ~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQG-lge~gL~~l~~a~~~~-Gl~vvt 114 (286)
T COG2876 46 LRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQG-LGEEGLKLLKRAADET-GLPVVT 114 (286)
T ss_pred eEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccc-cCHHHHHHHHHHHHHc-CCeeEE
Confidence 45666 4677889999999999999999988754 3666665 5667788999999999 899974
No 452
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=63.55 E-value=80 Score=26.58 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCCceEEEecC-CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 150 LNLEAWMTEAKTHGFTVMVQIG-GTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 150 ~li~~vve~~~G~rvpVIaGVg-~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
++++-+.+.+...+..+++... ..+.....++.+...+.++|++++.++. . +... +....+ . ++|++++
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~--~--~~~~----~~~~~~-~-~ipvv~~ 85 (264)
T cd01574 16 STLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPL--D--DADA----ALAAAP-A-DVPVVFV 85 (264)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCC--C--ChHH----HHHHHh-c-CCCEEEE
Confidence 3444333333322345544443 3345677777888888889999888653 1 2221 223333 4 6899999
Q ss_pred eCC
Q psy9602 229 HIP 231 (239)
Q Consensus 229 N~P 231 (239)
|.+
T Consensus 86 ~~~ 88 (264)
T cd01574 86 DGS 88 (264)
T ss_pred ecc
Confidence 876
No 453
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=63.51 E-value=17 Score=31.87 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 175 FQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 175 t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
..+.+++++.+++.|++.+.+..-..-.. ....-.+.++.+.+.+ ++||++
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~-~~~~~~~~i~~i~~~~-~~pv~~ 76 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSE-GRETMLDVVERVAEEV-FIPLTV 76 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccc-cCcccHHHHHHHHHhC-CCCEEE
Confidence 34788999999999999999887553222 2233567788888888 788874
No 454
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=63.38 E-value=38 Score=31.56 Aligned_cols=65 Identities=15% Similarity=0.057 Sum_probs=52.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC--CC------C----CCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP--EL------F----FTPASVEDLVDYLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P--P~------y----~~~~s~e~iv~yf~~VaeatpdLPIiLYN 229 (239)
..|+++++.+++.++..+.++.+++.|+|++=+-- |. + ... +++-+.+-.+++.+++ +.||.+-=
T Consensus 64 ~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~-~p~~~~eiv~av~~a~-d~pv~vKi 140 (321)
T PRK10415 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQ-YPDLVKSILTEVVNAV-DVPVTLKI 140 (321)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhc-CHHHHHHHHHHHHHhc-CCceEEEE
Confidence 56889999999999999999999999999998754 32 0 111 5788999999999988 88988643
No 455
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=63.36 E-value=86 Score=28.48 Aligned_cols=86 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred EEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCC---------HHHHHHHHHHHHhCCC--CEEEECCCCC
Q psy9602 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTC---------FQEVVELAKHAESLNV--HAVLCLPELF 200 (239)
Q Consensus 132 vV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~S---------t~eAIelar~A~~aGA--daVlV~PP~y 200 (239)
+++..+||. +...+++..+.+. ++|+|+-..... .+.+.++...|.++|. +-+++=|-..
T Consensus 94 iINsIs~~~-----~~~~~~~~l~~~~----g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~ 164 (261)
T PRK07535 94 LINSVSAEG-----EKLEVVLPLVKKY----NAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVL 164 (261)
T ss_pred EEEeCCCCC-----ccCHHHHHHHHHh----CCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCC
Q ss_pred -CCCCCHHHH---HHHHHHHHhhCCCCcEEE
Q psy9602 201 -FTPASVEDL---VDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 201 -~~~~s~e~i---v~yf~~VaeatpdLPIiL 227 (239)
+.. +.+.. ++.++.+.+..|+.|+++
T Consensus 165 ~~~~-~~~~~~~~l~~i~~l~~~~pg~p~l~ 194 (261)
T PRK07535 165 PLSA-AQDAGPEVLETIRRIKELYPKVHTTC 194 (261)
T ss_pred cccC-ChHHHHHHHHHHHHHHHhCCCCCEEE
No 456
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=63.20 E-value=87 Score=31.19 Aligned_cols=93 Identities=9% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
+...++.+..++++=++ ++.+.-. .+.++.+.+...+ ++|++|-.. +.+-++.+.++|||++.+.--..
T Consensus 246 ~~~l~~ag~d~i~id~a-~G~s~~~---~~~i~~ik~~~~~--~~v~aG~V~-----t~~~a~~~~~aGad~I~vg~g~G 314 (495)
T PTZ00314 246 AAALIEAGVDVLVVDSS-QGNSIYQ---IDMIKKLKSNYPH--VDIIAGNVV-----TADQAKNLIDAGADGLRIGMGSG 314 (495)
T ss_pred HHHHHHCCCCEEEEecC-CCCchHH---HHHHHHHHhhCCC--ceEEECCcC-----CHHHHHHHHHcCCCEEEECCcCC
Q ss_pred ----------CCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 201 ----------FTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 201 ----------~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
... .+-..+.-...+++.. ++|||
T Consensus 315 s~~~t~~~~~~g~-p~~~ai~~~~~~~~~~-~v~vI 348 (495)
T PTZ00314 315 SICITQEVCAVGR-PQASAVYHVARYARER-GVPCI 348 (495)
T ss_pred cccccchhccCCC-ChHHHHHHHHHHHhhc-CCeEE
No 457
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=63.14 E-value=96 Score=28.46 Aligned_cols=90 Identities=13% Similarity=0.050 Sum_probs=62.8
Q ss_pred HHhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 121 ITLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 121 v~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
+....+.|...+|+|..=+-..+..+--.+|++. ++ ..|+.++=.-..+.+-.+-.+...++|++.||-. .
T Consensus 79 i~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~----a~--~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTS---G 149 (248)
T PRK11572 79 IATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAA----AG--PLAVTFHRAFDMCANPLNALKQLADLGVARILTS---G 149 (248)
T ss_pred HHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHH----hc--CCceEEechhhccCCHHHHHHHHHHcCCCEEECC---C
Confidence 4445566766777776666667777655555544 44 4788887766666677777778888899999876 4
Q ss_pred CCCCCHHHHHHHHHHHHhhC
Q psy9602 201 FTPASVEDLVDYLRDVGEAA 220 (239)
Q Consensus 201 ~~~~s~e~iv~yf~~Vaeat 220 (239)
..+ +-.+=++..+++.+..
T Consensus 150 g~~-~a~~g~~~L~~lv~~a 168 (248)
T PRK11572 150 QQQ-DAEQGLSLIMELIAAS 168 (248)
T ss_pred CCC-CHHHHHHHHHHHHHhc
Confidence 445 6677788888888776
No 458
>PLN02826 dihydroorotate dehydrogenase
Probab=63.11 E-value=65 Score=31.40 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=52.0
Q ss_pred HHHHhhHHhhhcCCCCEEEecc----ccCCcCCCHHHHHHHHHHHHHHhc-------CCCceEEEecCCCCH-HHHHHHH
Q psy9602 115 CMLLVGITLRMAPIIDQMVNGT----TGEGVSMTTAERKLNLEAWMTEAK-------THGFTVMVQIGGTCF-QEVVELA 182 (239)
Q Consensus 115 ~~l~~~v~~~~~gg~glvV~Gs----tGE~~sLT~eER~~li~~vve~~~-------G~rvpVIaGVg~~St-~eAIela 182 (239)
+++...++..-...+.+.+|=| -|.-..-..+.-.++++.+.+..+ . ++||++=++.+-+ ++..+.+
T Consensus 204 ~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~-~~Pv~vKlaPdl~~~di~~ia 282 (409)
T PLN02826 204 ADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEG-PPPLLVKIAPDLSKEDLEDIA 282 (409)
T ss_pred HHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhcccc-CCceEEecCCCCCHHHHHHHH
Confidence 3444444433333334445533 233333445666677777765432 3 6899998875444 4788899
Q ss_pred HHHHhCCCCEEEECCC
Q psy9602 183 KHAESLNVHAVLCLPE 198 (239)
Q Consensus 183 r~A~~aGAdaVlV~PP 198 (239)
+.|.+.|+|++.+..-
T Consensus 283 ~~a~~~G~dGIi~~NT 298 (409)
T PLN02826 283 AVALALGIDGLIISNT 298 (409)
T ss_pred HHHHHcCCCEEEEEcc
Confidence 9999999999999863
No 459
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=63.00 E-value=52 Score=30.11 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiL 227 (239)
.+.++.+.+...+ . ++|+...+.+++.+ |.++|+|.+++-|. .++++....+.+....|++|++.
T Consensus 171 ~~av~~~R~~~~~--~--~IgVev~t~eea~~----A~~~gaD~I~ld~~------~p~~l~~~~~~~~~~~~~i~i~A 235 (272)
T cd01573 171 LKALARLRATAPE--K--KIVVEVDSLEEALA----AAEAGADILQLDKF------SPEELAELVPKLRSLAPPVLLAA 235 (272)
T ss_pred HHHHHHHHHhCCC--C--eEEEEcCCHHHHHH----HHHcCCCEEEECCC------CHHHHHHHHHHHhccCCCceEEE
Confidence 4555666665433 2 46888888866555 66899999999853 22455555554544334566654
No 460
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=62.97 E-value=61 Score=30.50 Aligned_cols=83 Identities=11% Similarity=0.133 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecCC--CC-----------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHH
Q psy9602 145 TAERKLNLEAWMTEAKTHGFTVMVQIGG--TC-----------FQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVD 211 (239)
Q Consensus 145 ~eER~~li~~vve~~~G~rvpVIaGVg~--~S-----------t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~ 211 (239)
.+++...++.+...+..-++|.++-.-. .. ..-+++-++.--+.|+|-+=|--|.|... -+++...
T Consensus 142 neqk~a~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPvyveG-e~~ea~~ 220 (306)
T COG3684 142 NEQKLAYIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPVYVEG-EQEEAAA 220 (306)
T ss_pred hHHHHHHHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCceEEeecceeccC-ccHHHHH
Confidence 3678888888876654437888875422 11 23445555666677999999999998776 7899999
Q ss_pred HHHHHHhhCCCCcEEEEe
Q psy9602 212 YLRDVGEAAPATPLFYYH 229 (239)
Q Consensus 212 yf~~VaeatpdLPIiLYN 229 (239)
+|....+++ ++|.++-.
T Consensus 221 ~f~~~~~~~-~lP~i~LS 237 (306)
T COG3684 221 AFQRQNDHI-NLPWIYLS 237 (306)
T ss_pred HHHHhhcCC-CCCeEEEe
Confidence 999999999 89988754
No 461
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=62.90 E-value=52 Score=33.98 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=76.1
Q ss_pred cccCCC---CCccccceEEEeehhhHHHHH-HHHhhHHh---hhcCCCCEEEeccccCCcCCCHHHH--------HHHHH
Q psy9602 89 VMIDPS---DLPKRAKWTIIITAGLLLLTC-MLLVGITL---RMAPIIDQMVNGTTGEGVSMTTAER--------KLNLE 153 (239)
Q Consensus 89 ~~iD~~---~l~~~~~W~iv~~A~~~~~~~-~l~~~v~~---~~~gg~glvV~GstGE~~sLT~eER--------~~li~ 153 (239)
.++|++ +..+-+-|.-+ |...++.+ .+..+++. .++.|.+. .+.+|-.+-+ ++|++
T Consensus 45 tTVdp~ivAAaAnAGhwaEL--AGGGq~t~e~~~~~i~ql~~~lepG~t~-------qfN~ifldpylw~~qig~krLv~ 115 (717)
T COG4981 45 TTVDPDIVAAAANAGHWAEL--AGGGQVTEEIFTNAIEQLVSLLEPGRTA-------QFNSIFLDPYLWKLQIGGKRLVQ 115 (717)
T ss_pred CcCCHHHHHHHhcCCceeee--cCCcccCHHHHHHHHHHHHhccCCCccc-------eeeEEEechHHhhhcCChHHHHH
Confidence 456665 56667778765 44445444 33233332 23444332 2222222211 34555
Q ss_pred HHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Q psy9602 154 AWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMF 233 (239)
Q Consensus 154 ~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~ 233 (239)
.++..... --=|+++.|-.+.++|.|+++..-+-|...+. ++| ..-+-++-.-.|+.+.|..||+++=--.+
T Consensus 116 kara~G~~-I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~------fKP-GtIeqI~svi~IAka~P~~pIilq~egGr 187 (717)
T COG4981 116 KARASGAP-IDGVVISAGIPSLEEAVELIEELGDDGFPYVA------FKP-GTIEQIRSVIRIAKANPTFPIILQWEGGR 187 (717)
T ss_pred HHHhcCCC-cceEEEecCCCcHHHHHHHHHHHhhcCceeEE------ecC-CcHHHHHHHHHHHhcCCCCceEEEEecCc
Confidence 55543211 11256688889999999999888777766654 455 44555666778999999999999865544
Q ss_pred c
Q psy9602 234 T 234 (239)
Q Consensus 234 T 234 (239)
.
T Consensus 188 a 188 (717)
T COG4981 188 A 188 (717)
T ss_pred c
Confidence 4
No 462
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=62.89 E-value=14 Score=35.02 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEec-----------------------------CCCCHHHHHHHHHHHHhCCCCEEEEC
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQI-----------------------------GGTCFQEVVELAKHAESLNVHAVLCL 196 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaGV-----------------------------g~~St~eAIelar~A~~aGAdaVlV~ 196 (239)
+=|...|+...+..+-.+++||.=. --.+.++|+..+..=.+-|||-+||=
T Consensus 161 DGrV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVK 240 (314)
T cd00384 161 DGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVK 240 (314)
T ss_pred ccHHHHHHHHHHHCCCCCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEc
Confidence 5677778888777543357777521 11247889988888888899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 197 PELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 197 PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
|-..| ++-.+.+.+.+ ++|+..||..+
T Consensus 241 Pal~Y--------LDIi~~~k~~~-~~PvaaYqVSG 267 (314)
T cd00384 241 PALAY--------LDIIRDVRERF-DLPVAAYNVSG 267 (314)
T ss_pred CCchH--------HHHHHHHHHhc-CCCEEEEEccH
Confidence 85433 45567777888 89999999753
No 463
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=62.65 E-value=50 Score=31.54 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=51.6
Q ss_pred CEEE-eccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHH
Q psy9602 130 DQMV-NGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVED 208 (239)
Q Consensus 130 glvV-~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~ 208 (239)
.+.. ..-.|=+..++..|. ++..++. . ++|||++.|=.+..++ ..|.++|||++++..-..-.. ++-.
T Consensus 221 avmPl~~pIGsg~gv~~p~~---i~~~~e~--~-~vpVivdAGIg~~sda----~~AmelGadgVL~nSaIa~a~-dPv~ 289 (326)
T PRK11840 221 AVMPLGAPIGSGLGIQNPYT---IRLIVEG--A-TVPVLVDAGVGTASDA----AVAMELGCDGVLMNTAIAEAK-NPVL 289 (326)
T ss_pred EEeeccccccCCCCCCCHHH---HHHHHHc--C-CCcEEEeCCCCCHHHH----HHHHHcCCCEEEEcceeccCC-CHHH
Confidence 3455 455666666775554 4445554 2 6999998877776664 678899999999998665444 6666
Q ss_pred HHHHHHHHH
Q psy9602 209 LVDYLRDVG 217 (239)
Q Consensus 209 iv~yf~~Va 217 (239)
+-.-|+.-.
T Consensus 290 Ma~A~~~av 298 (326)
T PRK11840 290 MARAMKLAV 298 (326)
T ss_pred HHHHHHHHH
Confidence 666665433
No 464
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=62.65 E-value=15 Score=34.96 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=64.1
Q ss_pred hcCCCCEE-EeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEec-----------------------------CCCC
Q psy9602 125 MAPIIDQM-VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQI-----------------------------GGTC 174 (239)
Q Consensus 125 ~~gg~glv-V~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGV-----------------------------g~~S 174 (239)
-+.|++++ ..++. +=|...|+...+..+-.++|||.=. --.+
T Consensus 152 A~AGADiVAPSdMM--------DGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n 223 (320)
T cd04823 152 AEAGADIVAPSDMM--------DGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPAN 223 (320)
T ss_pred HHhCCCEEEcccch--------hhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCC
Confidence 45666665 33332 7788888888887643367777521 1123
Q ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCC
Q psy9602 175 FQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPM 232 (239)
Q Consensus 175 t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~ 232 (239)
.++|+..+..=.+-|||-+||=|-..| ++-.+.+.+.+ ++||..||..+
T Consensus 224 ~~eAlre~~~Di~EGAD~lMVKPal~Y--------LDIi~~~k~~~-~lPvaaYqVSG 272 (320)
T cd04823 224 SREALREVALDIAEGADMVMVKPGMPY--------LDIIRRVKDEF-GVPTFAYQVSG 272 (320)
T ss_pred HHHHHHHHHhhHHhCCCEEEEcCCchH--------HHHHHHHHHhc-CCCEEEEEccH
Confidence 678888888888889999999985433 34566777788 89999999753
No 465
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=62.63 E-value=71 Score=26.78 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 177 EVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 177 eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
+..+..+.+...++|++++.+.. + +. .+ ++.+.+ . ++|++++|.+
T Consensus 42 ~~~~~i~~~~~~~vdgiii~~~~---~-~~-~~---~~~~~~-~-~ipvV~~~~~ 86 (266)
T cd06278 42 DLDAALRQLLQYRVDGVIVTSGT---L-SS-EL---AEECRR-N-GIPVVLINRY 86 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEecCC---C-CH-HH---HHHHhh-c-CCCEEEECCc
Confidence 45566666777788888887543 1 22 12 344434 3 6788888764
No 466
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=62.58 E-value=86 Score=26.47 Aligned_cols=55 Identities=5% Similarity=0.065 Sum_probs=36.2
Q ss_pred ceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 164 FTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 164 vpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
..+++..+..+.....+..+.+...++|++++.+.. . . + +.+. .. ++|+++.|.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~---~-~---~----~~~~-~~-gipvv~~~~~ 84 (265)
T cd06291 30 YKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTHN---L-G---I----EEYE-NI-DLPIVSFDRY 84 (265)
T ss_pred CeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecCC---c-C---H----HHHh-cC-CCCEEEEeCC
Confidence 455555555566767788888888889999887631 2 1 1 1222 34 6899988875
No 467
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=62.46 E-value=59 Score=34.23 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=56.2
Q ss_pred HHHHhcCCCceEEEecCCCCH----------------HHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHh
Q psy9602 155 WMTEAKTHGFTVMVQIGGTCF----------------QEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGE 218 (239)
Q Consensus 155 vve~~~G~rvpVIaGVg~~St----------------~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vae 218 (239)
+++.++.+++|+=+||.+.|+ +-|++.++.+++.|.+-+++.-= .. +....+.-|+.++.
T Consensus 215 ~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~K---sS-n~~~~V~AyR~La~ 290 (733)
T PLN02925 215 LVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMK---AS-NPVVMVQAYRLLVA 290 (733)
T ss_pred HHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEE---cC-ChHHHHHHHHHHHH
Confidence 444555447999999988774 45788999999999999998731 12 56778888888888
Q ss_pred h-----CCCCcEEEEeCCC
Q psy9602 219 A-----APATPLFYYHIPM 232 (239)
Q Consensus 219 a-----tpdLPIiLYN~P~ 232 (239)
. . +.|+.|...-.
T Consensus 291 ~L~~~g~-~yPLhLgvTEA 308 (733)
T PLN02925 291 EMYVLGW-DYPLHLGVTEA 308 (733)
T ss_pred HHHhcCC-CCceEEEEecC
Confidence 8 6 89999987655
No 468
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=62.19 E-value=37 Score=31.79 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=52.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC--CCC----------CCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP--ELF----------FTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P--P~y----------~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
..|+++++.+.+.++..+.++.+++.|+|++=+-- |.. ... +++-+.+..+++.+++ +.||.+=
T Consensus 54 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~-~p~~~~~iv~av~~~~-~~PVsvK 129 (318)
T TIGR00742 54 ESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMG-NADLVADCVKAMQEAV-NIPVTVK 129 (318)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhc-CHHHHHHHHHHHHHHh-CCCeEEE
Confidence 67999999999999999999999999999987643 221 112 7788999999999988 7888753
No 469
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=62.15 E-value=1e+02 Score=28.64 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEecCCCC-HH-HHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhh
Q psy9602 142 SMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTC-FQ-EVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~rvpVIaGVg~~S-t~-eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaea 219 (239)
.+|.+.-.++++.+.+.-. ++|++.-...+- .. ..-++.+.|+++|+|++++..= ..|+- +.|...++.
T Consensus 75 g~t~~~~lel~~~~r~~~~--~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL------P~ee~-~~~~~~~~~ 145 (265)
T COG0159 75 GVTLEDTLELVEEIRAKGV--KVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL------PPEES-DELLKAAEK 145 (265)
T ss_pred CCCHHHHHHHHHHHHhcCC--CCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC------ChHHH-HHHHHHHHH
Confidence 4677888888888886532 689988776655 23 3344689999999999999751 11222 244445555
Q ss_pred CCCCcEEEEeCCCCc
Q psy9602 220 APATPLFYYHIPMFT 234 (239)
Q Consensus 220 tpdLPIiLYN~P~~T 234 (239)
. ++..|..=-|..+
T Consensus 146 ~-gi~~I~lvaPtt~ 159 (265)
T COG0159 146 H-GIDPIFLVAPTTP 159 (265)
T ss_pred c-CCcEEEEeCCCCC
Confidence 6 6777777666543
No 470
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=62.11 E-value=95 Score=28.86 Aligned_cols=90 Identities=13% Similarity=0.067 Sum_probs=61.7
Q ss_pred HhhhcCCCCEEEeccccCCcC-CCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q psy9602 122 TLRMAPIIDQMVNGTTGEGVS-MTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF 200 (239)
Q Consensus 122 ~~~~~gg~glvV~GstGE~~s-LT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y 200 (239)
+..-+-..-+++..+-|.... +..+.-..+++.+++...- .+||.+..-+... .+.++.|.++|++.||+=-...
T Consensus 36 ~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~VPV~lHLDHg~~---~e~i~~ai~~GftSVM~DgS~l 111 (285)
T PRK07709 36 AAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNI-TVPVAIHLDHGSS---FEKCKEAIDAGFTSVMIDASHH 111 (285)
T ss_pred HHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCC-CCcEEEECCCCCC---HHHHHHHHHcCCCEEEEeCCCC
Confidence 334444556777777777776 6777777778877776532 4899999987654 5566688999999999986542
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q psy9602 201 FTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 201 ~~~~s~e~iv~yf~~Vaea 219 (239)
+-++=++.-+++.+-
T Consensus 112 ----p~eeNi~~Trevv~~ 126 (285)
T PRK07709 112 ----PFEENVETTKKVVEY 126 (285)
T ss_pred ----CHHHHHHHHHHHHHH
Confidence 446555555555543
No 471
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=62.09 E-value=20 Score=33.40 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=37.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCC-H-HHHHHHHHHHHhhCCCCcEEE
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPAS-V-EDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s-~-e~iv~yf~~VaeatpdLPIiL 227 (239)
++.|+.-|++ ++.++.+.+.|+|++++.-+---.-.. + +.+...+..+.+.. ++||+.
T Consensus 136 gi~v~~~v~s------~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~-~iPVia 195 (330)
T PF03060_consen 136 GIKVIPQVTS------VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV-DIPVIA 195 (330)
T ss_dssp T-EEEEEESS------HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH--SS-EEE
T ss_pred CCccccccCC------HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhc-CCcEEE
Confidence 5788887765 566788999999999999653211101 1 25899999999999 899874
No 472
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=62.05 E-value=43 Score=29.68 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-CHHHHHHHHHHHHhhCCCCcEEE
Q psy9602 174 CFQEVVELAKHAESLNVHAVLCLPELFFTPA-SVEDLVDYLRDVGEAAPATPLFY 227 (239)
Q Consensus 174 St~eAIelar~A~~aGAdaVlV~PP~y~~~~-s~e~iv~yf~~VaeatpdLPIiL 227 (239)
+..+.+++++..++.|++.+++..=.--... .. =++.++.+.+.+ ++||+.
T Consensus 144 ~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~--d~~~i~~i~~~~-~ipvia 195 (241)
T PRK14024 144 DGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP--NLELLREVCART-DAPVVA 195 (241)
T ss_pred cCccHHHHHHHHHhcCCCEEEEEeecCCCCccCC--CHHHHHHHHhhC-CCCEEE
Confidence 3456789999999999999999974321110 11 267778888888 899875
No 473
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.00 E-value=24 Score=31.24 Aligned_cols=62 Identities=11% Similarity=-0.018 Sum_probs=41.7
Q ss_pred HhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q psy9602 122 TLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVL 194 (239)
Q Consensus 122 ~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVl 194 (239)
+...++|..++=. .|+.+...+.++.+.+...+ +--+++|+|.-.+.+ .++.|.++||+.++
T Consensus 32 ~al~~~Gi~~iEi-------t~~~~~a~~~i~~l~~~~~~-~p~~~vGaGTV~~~~---~~~~a~~aGA~Fiv 93 (213)
T PRK06552 32 LAVIKGGIKAIEV-------TYTNPFASEVIKELVELYKD-DPEVLIGAGTVLDAV---TARLAILAGAQFIV 93 (213)
T ss_pred HHHHHCCCCEEEE-------ECCCccHHHHHHHHHHHcCC-CCCeEEeeeeCCCHH---HHHHHHHcCCCEEE
Confidence 3446777766511 13446677888888876532 113889998877765 56788899999887
No 474
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=61.94 E-value=51 Score=31.04 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=50.8
Q ss_pred hHHhhhcCCCCEEEeccccC---------CcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCC-----------------
Q psy9602 120 GITLRMAPIIDQMVNGTTGE---------GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGT----------------- 173 (239)
Q Consensus 120 ~v~~~~~gg~glvV~GstGE---------~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~----------------- 173 (239)
.++.+-+||.|+++.|.+.- ...+..++...-++.+++.+......+++++.+.
T Consensus 42 ~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~ 121 (337)
T PRK13523 42 HYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIP 121 (337)
T ss_pred HHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCC
Confidence 34556678899877664322 1235567777777777777665456777776331
Q ss_pred -----------C-------HHHHHHHHHHHHhCCCCEEEECCC
Q psy9602 174 -----------C-------FQEVVELAKHAESLNVHAVLCLPE 198 (239)
Q Consensus 174 -----------S-------t~eAIelar~A~~aGAdaVlV~PP 198 (239)
+ .++-++-|+.|+++|+|+|-|..-
T Consensus 122 ~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~a 164 (337)
T PRK13523 122 FDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGA 164 (337)
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 1 123344678888999999998644
No 475
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=61.82 E-value=32 Score=29.94 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=47.8
Q ss_pred CCCC-EEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCC
Q psy9602 127 PIID-QMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPAS 205 (239)
Q Consensus 127 gg~g-lvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s 205 (239)
.|.+ +++.+..-++.. +. .-.++++.+.+.+ .+||+++=+-.+.+++.+ +.+.||+++++..-.+..+.+
T Consensus 161 ~G~~~i~~~~~~~~g~~-~g-~~~~~i~~i~~~~---~iPvia~GGI~~~~di~~----~~~~Ga~gv~vgsa~~~~~~~ 231 (241)
T PRK13585 161 LGAGSILFTNVDVEGLL-EG-VNTEPVKELVDSV---DIPVIASGGVTTLDDLRA----LKEAGAAGVVVGSALYKGKFT 231 (241)
T ss_pred cCCCEEEEEeecCCCCc-CC-CCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHH----HHHcCCCEEEEEHHHhcCCcC
Confidence 3444 556555433322 11 2345677777765 589999877777877665 355799999998766655534
Q ss_pred HHHHHHH
Q psy9602 206 VEDLVDY 212 (239)
Q Consensus 206 ~e~iv~y 212 (239)
.+++.++
T Consensus 232 ~~~~~~~ 238 (241)
T PRK13585 232 LEEAIEA 238 (241)
T ss_pred HHHHHHH
Confidence 4555444
No 476
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=61.80 E-value=53 Score=29.06 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=53.0
Q ss_pred hhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602 123 LRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT 202 (239)
Q Consensus 123 ~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~ 202 (239)
..++.|..++|.=.. + .++++.+.+. ++|++.|+...| .+..|.++|++.+=+.|-..+.
T Consensus 75 ~a~~aGA~FivsP~~------~----~~v~~~~~~~----~i~~iPG~~Tpt------Ei~~A~~~Ga~~vKlFPA~~~G 134 (204)
T TIGR01182 75 QAVDAGAQFIVSPGL------T----PELAKHAQDH----GIPIIPGVATPS------EIMLALELGITALKLFPAEVSG 134 (204)
T ss_pred HHHHcCCCEEECCCC------C----HHHHHHHHHc----CCcEECCCCCHH------HHHHHHHCCCCEEEECCchhcC
Confidence 345667776543222 2 2566666653 699999886632 4678899999999999844332
Q ss_pred CCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 203 PASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 203 ~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
. .+|+++|..=.|++|+|
T Consensus 135 G------~~yikal~~plp~i~~~ 152 (204)
T TIGR01182 135 G------VKMLKALAGPFPQVRFC 152 (204)
T ss_pred C------HHHHHHHhccCCCCcEE
Confidence 0 37888888877788877
No 477
>PRK06852 aldolase; Validated
Probab=61.78 E-value=35 Score=32.10 Aligned_cols=63 Identities=8% Similarity=-0.044 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCceEEE-ecCCCCHHHHHHHHHHHHh-CCCCEEEECCCCCCCCCCH--HHHHHHHHHHH
Q psy9602 152 LEAWMTEAKTHGFTVMV-QIGGTCFQEVVELAKHAES-LNVHAVLCLPELFFTPASV--EDLVDYLRDVG 217 (239)
Q Consensus 152 i~~vve~~~G~rvpVIa-GVg~~St~eAIelar~A~~-aGAdaVlV~PP~y~~~~s~--e~iv~yf~~Va 217 (239)
++.+++.+ | ++||++ |=...+.++.+++++.+.+ .|+.++.+-=..|..+ ++ ..+.+-+..|.
T Consensus 221 f~~vv~~~-g-~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~-~p~~~~~~~Ai~~IV 287 (304)
T PRK06852 221 FKEAVLAA-G-RTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKP-LDEAVRMCNAIYAIT 287 (304)
T ss_pred HHHHHHhC-C-CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCC-CchHHHHHHHHHHHH
Confidence 34455544 4 688655 5555588999999999988 9999999998888777 66 55555555443
No 478
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=61.68 E-value=27 Score=33.82 Aligned_cols=56 Identities=11% Similarity=0.031 Sum_probs=42.1
Q ss_pred CcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 140 GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 140 ~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
...-+.+.-.+|++.+.+.+ ++||++=++.+- .+..+.++.|.+.|||++.+..-.
T Consensus 162 ~~gq~~e~~~~i~~~Vk~~~---~iPv~vKLsPn~-t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 162 AVGQDCDLLEEVCGWINAKA---TVPVWAKMTPNI-TDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred hhccCHHHHHHHHHHHHHhh---cCceEEEeCCCh-hhHHHHHHHHHHhCCCEEEEeccc
Confidence 33455666666777776654 589999998654 458899999999999999997644
No 479
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=61.52 E-value=6.9 Score=34.35 Aligned_cols=69 Identities=9% Similarity=0.059 Sum_probs=44.8
Q ss_pred CceEEEecC--CCCHHHH-----HHHHHHHHhCCCCEEEECCCCC-CCCCCHHHHHHHHHHHHhhCC--CCcEEEEeCC
Q psy9602 163 GFTVMVQIG--GTCFQEV-----VELAKHAESLNVHAVLCLPELF-FTPASVEDLVDYLRDVGEAAP--ATPLFYYHIP 231 (239)
Q Consensus 163 rvpVIaGVg--~~St~eA-----Ielar~A~~aGAdaVlV~PP~y-~~~~s~e~iv~yf~~Vaeatp--dLPIiLYN~P 231 (239)
+++++++.. ...++.- +..++.|.+.|||+|-+..++. ..+...+...+-.+.+.+.+. ++|+|+--+|
T Consensus 56 ~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l 134 (236)
T PF01791_consen 56 KVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL 134 (236)
T ss_dssp EEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE
T ss_pred ccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 578888874 4456666 7899999999999999887652 122144555555555554431 6888887443
No 480
>KOG0538|consensus
Probab=61.40 E-value=59 Score=31.28 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=55.6
Q ss_pred cCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-
Q psy9602 126 APIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA- 204 (239)
Q Consensus 126 ~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~- 204 (239)
.|+.|++|.-|.|--.--+..- .+++..++++++| |+||+.-=|--+=.+. -.|..+||.+|.+--|+.|...
T Consensus 243 ~G~~GIIVSNHGgRQlD~vpAt-I~~L~Evv~aV~~-ri~V~lDGGVR~G~DV----lKALALGAk~VfiGRP~v~gLA~ 316 (363)
T KOG0538|consen 243 AGVAGIIVSNHGGRQLDYVPAT-IEALPEVVKAVEG-RIPVFLDGGVRRGTDV----LKALALGAKGVFIGRPIVWGLAA 316 (363)
T ss_pred hCCceEEEeCCCccccCcccch-HHHHHHHHHHhcC-ceEEEEecCcccchHH----HHHHhcccceEEecCchheeecc
Confidence 3556888988888877666554 4567778889999 9999993332222222 3467799999999999987763
Q ss_pred -CHHHHHH
Q psy9602 205 -SVEDLVD 211 (239)
Q Consensus 205 -s~e~iv~ 211 (239)
.+.++.+
T Consensus 317 ~Ge~GV~~ 324 (363)
T KOG0538|consen 317 KGEAGVKK 324 (363)
T ss_pred ccchhHHH
Confidence 4444433
No 481
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=61.36 E-value=31 Score=31.21 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=44.2
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 170 IGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 170 Vg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
+-..+.+.++++++...+.|||.+=|-.-+.... ..+++.+....|.+.+ +.||.|--+
T Consensus 20 ~~~~~~d~~~~~A~~~~~~GAdiIDIG~~~~~~~-~~ee~~r~v~~i~~~~-~~piSIDT~ 78 (252)
T cd00740 20 IKAEDYDEALDVARQQVEGGAQILDLNVDYGGLD-GVSAMKWLLNLLATEP-TVPLMLDST 78 (252)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-HHHHHHHHHHHHHHhc-CCcEEeeCC
Confidence 3347889999999999999999999987433222 4667777777777667 899877543
No 482
>TIGR02779 NHEJ_ligase_lig DNA polymerase LigD, ligase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the ligase domain.
Probab=61.33 E-value=25 Score=32.30 Aligned_cols=59 Identities=17% Similarity=0.043 Sum_probs=45.8
Q ss_pred CCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 139 EGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 139 E~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
+...+...||+++++.++...++ ...++.. ...+..+..++.+.+.+.|..++|+=.|-
T Consensus 109 ~l~~~pl~eRr~~L~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~g~EGiv~K~~d 167 (298)
T TIGR02779 109 DLRDLPLSERKKLLEELLKAIKG-PLAPDRY-SVHFEGDGQALLEAACRLGLEGVVAKRRD 167 (298)
T ss_pred ehhcCCHHHHHHHHHHHhcccCC-CceeEec-ccCchhHHHHHHHHHHHcCCceEEEeCCC
Confidence 35678999999999999877655 4444432 45577888999999999999999996543
No 483
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=61.22 E-value=66 Score=28.55 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCCceEEEecCCCC-HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEE
Q psy9602 150 LNLEAWMTEAKTHGFTVMVQIGGTC-FQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228 (239)
Q Consensus 150 ~li~~vve~~~G~rvpVIaGVg~~S-t~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLY 228 (239)
++++.+.+.+ ++|++.-+.-+. ...-.++++.+.++|+|++++..=++ . ..+++..+++.+.+. ++.+++.
T Consensus 64 ~~v~~vr~~~---~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~--e-~~~~~~~~~~~~~~~--Gl~~~~~ 135 (244)
T PRK13125 64 PLLEEVRKDV---SVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLI--D-YPDDLEKYVEIIKNK--GLKPVFF 135 (244)
T ss_pred HHHHHHhccC---CCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCC--C-cHHHHHHHHHHHHHc--CCCEEEE
Confidence 3555555432 568754332222 34555678888899999999853111 1 235666666666554 6777777
Q ss_pred eCCC
Q psy9602 229 HIPM 232 (239)
Q Consensus 229 N~P~ 232 (239)
=+|.
T Consensus 136 v~p~ 139 (244)
T PRK13125 136 TSPK 139 (244)
T ss_pred ECCC
Confidence 7774
No 484
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=61.20 E-value=53 Score=29.37 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=54.4
Q ss_pred ccccCCcCCCHHHHHHHHHHHHHHh--cCCCceEEEecCCC--------CHHHHHHHHHHHH-h---CCCCEEEECCCCC
Q psy9602 135 GTTGEGVSMTTAERKLNLEAWMTEA--KTHGFTVMVQIGGT--------CFQEVVELAKHAE-S---LNVHAVLCLPELF 200 (239)
Q Consensus 135 GstGE~~sLT~eER~~li~~vve~~--~G~rvpVIaGVg~~--------St~eAIelar~A~-~---aGAdaVlV~PP~y 200 (239)
...--..++...+-.+.+....... +. .++|++.|... +.+++.++++.+. + +-..|+|.+||+.
T Consensus 88 ~~~~~ihsvDs~~la~~L~~~a~~~~~~~-~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~~~ 166 (227)
T cd06822 88 PNLYMVETVDSEKLADKLNKAWEKLGERE-PLKVMVQVNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFG 166 (227)
T ss_pred ccccEEEecCCHHHHHHHHHHHHHhcCCC-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCCCC
Confidence 3455567777788777777776655 43 67788766432 3788899998886 5 4578999999996
Q ss_pred CCCCCHHHHHHHHHHHHh
Q psy9602 201 FTPASVEDLVDYLRDVGE 218 (239)
Q Consensus 201 ~~~~s~e~iv~yf~~Vae 218 (239)
+.. +++...+|+.+.+
T Consensus 167 ~~~--~~~~r~~f~~l~~ 182 (227)
T cd06822 167 YSL--SSGPNPDFLCLVD 182 (227)
T ss_pred CCc--HHHHHHHHHHHHH
Confidence 542 2444555555443
No 485
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=61.16 E-value=1.2e+02 Score=28.08 Aligned_cols=87 Identities=15% Similarity=0.011 Sum_probs=60.6
Q ss_pred hhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602 123 LRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT 202 (239)
Q Consensus 123 ~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~ 202 (239)
...+...-+++.-+-|+...+..+.-..+++.+.+.. ++||.+..-+... .+.+..|.++|++.||+=...
T Consensus 32 AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~---~VPV~lHLDH~~~---~~~i~~ai~~GftSVMiD~S~--- 102 (276)
T cd00947 32 AAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERA---SVPVALHLDHGSS---FELIKRAIRAGFSSVMIDGSH--- 102 (276)
T ss_pred HHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC---CCCEEEECCCCCC---HHHHHHHHHhCCCEEEeCCCC---
Confidence 3444555677777777877788788777777776654 6999999987654 355567889999999998644
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy9602 203 PASVEDLVDYLRDVGEA 219 (239)
Q Consensus 203 ~~s~e~iv~yf~~Vaea 219 (239)
. +.++=++.-+.+.+-
T Consensus 103 l-~~eeNi~~t~~vv~~ 118 (276)
T cd00947 103 L-PFEENVAKTKEVVEL 118 (276)
T ss_pred C-CHHHHHHHHHHHHHH
Confidence 2 456555555555443
No 486
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=61.13 E-value=35 Score=28.50 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=27.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHH
Q psy9602 163 GFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVD 211 (239)
Q Consensus 163 rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~ 211 (239)
++|++++- +-+. +.++.+.+.|+|++.+....+-.. +.++..+
T Consensus 166 ~~pi~v~G-GI~~----env~~~~~~gad~iivgsai~~~~-~~~~~~~ 208 (211)
T cd00429 166 NLLIEVDG-GINL----ETIPLLAEAGADVLVAGSALFGSD-DYAEAIK 208 (211)
T ss_pred CeEEEEEC-CCCH----HHHHHHHHcCCCEEEECHHHhCCC-CHHHHHH
Confidence 47886522 3333 336667789999999998776555 5554443
No 487
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=61.09 E-value=57 Score=28.67 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
.++++.+.+. ++|++-|+... ..+..|.++|++.+=+.|-..+. =.+|.++|..-.|++|+|
T Consensus 91 ~~v~~~~~~~----~i~~iPG~~Tp------tEi~~A~~~G~~~vK~FPA~~~G------G~~~ik~l~~p~p~~~~~ 152 (196)
T PF01081_consen 91 PEVIEYAREY----GIPYIPGVMTP------TEIMQALEAGADIVKLFPAGALG------GPSYIKALRGPFPDLPFM 152 (196)
T ss_dssp HHHHHHHHHH----TSEEEEEESSH------HHHHHHHHTT-SEEEETTTTTTT------HHHHHHHHHTTTTT-EEE
T ss_pred HHHHHHHHHc----CCcccCCcCCH------HHHHHHHHCCCCEEEEecchhcC------cHHHHHHHhccCCCCeEE
Confidence 3566766664 69999999874 35677889999999999865544 147999998877788876
No 488
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=60.91 E-value=15 Score=34.04 Aligned_cols=73 Identities=22% Similarity=0.192 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC-----------CCCCC--CHHHHHHHHHH
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL-----------FFTPA--SVEDLVDYLRD 215 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~-----------y~~~~--s~e~iv~yf~~ 215 (239)
+++++.+.+.++. +-|||.+..+..+ -||.+++.|||-++++..- .+.|. ..+-+.++-++
T Consensus 1 ~eil~~l~~~i~~-~~pIig~gaGtGl-----sAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~e 74 (268)
T PF09370_consen 1 KEILDRLRAQIKA-GKPIIGAGAGTGL-----SAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMARE 74 (268)
T ss_dssp -HHHHHHHHHHHT-T--EEEEEESSHH-----HHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhC-CCceEEEeeccch-----hhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHh
Confidence 3677778888777 7787764444333 4788999999999987421 11111 56788888899
Q ss_pred HHhhCCCCcEEE
Q psy9602 216 VGEAAPATPLFY 227 (239)
Q Consensus 216 VaeatpdLPIiL 227 (239)
|...+++.||+.
T Consensus 75 iLp~v~~tPVia 86 (268)
T PF09370_consen 75 ILPVVKDTPVIA 86 (268)
T ss_dssp HGGG-SSS-EEE
T ss_pred hhhhccCCCEEE
Confidence 999997899873
No 489
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=60.84 E-value=1.3e+02 Score=27.17 Aligned_cols=143 Identities=15% Similarity=0.043 Sum_probs=85.3
Q ss_pred ccccccccccCCCCCccccceEEEeehhhHHHHHHHHhhHHhhhcCCCCEEEeccccCCcCCCHH----HHHHHHHHHHH
Q psy9602 82 RNAHGEVVMIDPSDLPKRAKWTIIITAGLLLLTCMLLVGITLRMAPIIDQMVNGTTGEGVSMTTA----ERKLNLEAWMT 157 (239)
Q Consensus 82 ~~~~p~~~~iD~~~l~~~~~W~iv~~A~~~~~~~~l~~~v~~~~~gg~glvV~GstGE~~sLT~e----ER~~li~~vve 157 (239)
+.+.|+.+.-=.--..+-+.+-.+.-....+- |..-++...+.|..++++=.||||..|+.. |=.+++.-++.
T Consensus 44 ~~~aP~~ge~vLvTrL~DG~~V~ls~~~v~~~---lq~~i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~ 120 (221)
T PF07302_consen 44 AALAPEPGEYVLVTRLRDGTQVVLSKKKVEPR---LQACIAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVA 120 (221)
T ss_pred HHhCCCCCCceeEEEeCCCCEEEEEHHHHHHH---HHHHHHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHH
Confidence 34556544422223344455554433333332 212233445677888888899999988843 44567777777
Q ss_pred HhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeCCCCc
Q psy9602 158 EAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234 (239)
Q Consensus 158 ~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~P~~T 234 (239)
...+ . --+||.....++.-...+.-+.++.+-......+|. . +++++.+-=+++.+. +..+++-|+=++|
T Consensus 121 al~~-~--~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy~-~-~~~~l~~Aa~~L~~~--gadlIvLDCmGYt 190 (221)
T PF07302_consen 121 ALVG-G--HQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAASPYE-G-DEEELAAAARELAEQ--GADLIVLDCMGYT 190 (221)
T ss_pred HhcC-C--CeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeCCCC-C-CHHHHHHHHHHHHhc--CCCEEEEECCCCC
Confidence 6655 3 235666666666666777777776666555554343 2 567777777777765 5777777776554
No 490
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=60.82 E-value=42 Score=29.61 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCCEEEec-cccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Q psy9602 128 IIDQMVNG-TTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPEL 199 (239)
Q Consensus 128 g~glvV~G-stGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~ 199 (239)
..|+.+.| ..|| +.+|+.++++.+.+.+.. ..|.++ .|..++.+.+.+ ..+|+|-+-..-|.
T Consensus 82 ~~g~~igGl~~~~----~~~~~~~~l~~i~~~lp~-~~pr~l-~G~~~P~~i~~~----v~~GvD~fDs~~p~ 144 (238)
T PF01702_consen 82 FDGYAIGGLSPGE----EKEERLEILEAIINNLPP-DKPRYL-LGVGTPEEILEA----VYLGVDLFDSSYPT 144 (238)
T ss_dssp -SEEEE-SSSSSS----HHHHHHHHHHHHHHCS-T-TS-EEE-TTB-SHHHHHHH----HHTT--EEEESHHH
T ss_pred cccccccCCcCCC----CHHHHHHHHHHHHhhCCc-ccceec-cCCCCHHHHHHH----HHcCCcEEcchHHH
Confidence 44556666 4555 789999999999998877 788877 444466666554 57788876665443
No 491
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=60.77 E-value=61 Score=29.86 Aligned_cols=62 Identities=11% Similarity=0.003 Sum_probs=48.7
Q ss_pred EecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-CHHHHHHHHHHHHhhCCC-CcEEEEeC
Q psy9602 168 VQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPA-SVEDLVDYLRDVGEAAPA-TPLFYYHI 230 (239)
Q Consensus 168 aGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~-s~e~iv~yf~~Vaeatpd-LPIiLYN~ 230 (239)
..+...+.+.+....+.|++.++..++...|...... +-+.+..+.+.+++.+ + .||+++-.
T Consensus 19 ~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~vpv~lhlD 82 (282)
T TIGR01859 19 GAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERM-SIVPVALHLD 82 (282)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHC-CCCeEEEECC
Confidence 3556668888888889999999888888887643321 3678999999999999 8 99999843
No 492
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=60.74 E-value=58 Score=31.24 Aligned_cols=80 Identities=8% Similarity=0.057 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCC---CCCCCHH------------HHH
Q psy9602 146 AERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELF---FTPASVE------------DLV 210 (239)
Q Consensus 146 eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y---~~~~s~e------------~iv 210 (239)
+|-+++++.+.+. + --|..+...+.+.+...++.|++.+...++-+.|.. +...+.+ .+.
T Consensus 2 ~~~k~iL~~A~~~----~-yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (345)
T cd00946 2 DDVLKLFDYAKEN----G-FAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAA 76 (345)
T ss_pred hHHHHHHHHHHHC----C-ceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHH
Confidence 4455566555442 2 344466777888999999999999999999888752 2220111 688
Q ss_pred HHHHHHHhhCCCCcEEEEeCC
Q psy9602 211 DYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 211 ~yf~~VaeatpdLPIiLYN~P 231 (239)
.+.+.+++.+ +.||.|+---
T Consensus 77 ~~v~~~A~~~-~VPValHLDH 96 (345)
T cd00946 77 HHVRSMAEHY-GVPVVLHTDH 96 (345)
T ss_pred HHHHHHHHHC-CCCEEEECCC
Confidence 9999999999 8999997543
No 493
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=60.65 E-value=39 Score=32.46 Aligned_cols=86 Identities=16% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC--C
Q psy9602 127 PIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTP--A 204 (239)
Q Consensus 127 gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~--~ 204 (239)
|+.++.|.++.|-...=... -.+++..+++.+ ++|||+.=+=.+-.+++ .|..+||++|++--|+.|.. .
T Consensus 257 G~d~I~VSnhGGrqld~~~~-~~~~L~ei~~~~---~~~vi~dGGIr~g~Dv~----KALaLGA~aV~iGr~~l~~la~~ 328 (361)
T cd04736 257 GADGVILSNHGGRQLDDAIA-PIEALAEIVAAT---YKPVLIDSGIRRGSDIV----KALALGANAVLLGRATLYGLAAR 328 (361)
T ss_pred CcCEEEECCCCcCCCcCCcc-HHHHHHHHHHHh---CCeEEEeCCCCCHHHHH----HHHHcCCCEEEECHHHHHHHHhc
Confidence 44567788777754321111 244555555555 47999854444444444 57789999999999997653 2
Q ss_pred CHHHHHHHHHHHHhhC
Q psy9602 205 SVEDLVDYLRDVGEAA 220 (239)
Q Consensus 205 s~e~iv~yf~~Vaeat 220 (239)
.++++..+++.+.++.
T Consensus 329 G~~gv~~~l~~l~~el 344 (361)
T cd04736 329 GEAGVSEVLRLLKEEI 344 (361)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8899999988887754
No 494
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=60.56 E-value=72 Score=27.37 Aligned_cols=75 Identities=8% Similarity=-0.081 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEE
Q psy9602 147 ERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLF 226 (239)
Q Consensus 147 ER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIi 226 (239)
=+..+++.+.+.+...+.-+++..+. +.+...+..+.....++|++++.|.. . + +.+. .+.+..++.|++
T Consensus 15 f~~~l~~gi~~~~~~~gy~~~~~~~~-~~~~~~~~~~~l~~~~vdgiii~~~~---~-~-~~~~----~~~~~~~~ipvv 84 (260)
T cd06304 15 FNQSAYEGLEKAEKELGVEVKYVESV-EDADYEPNLRQLAAQGYDLIFGVGFG---F-M-DAVE----KVAKEYPDVKFA 84 (260)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEecC-CHHHHHHHHHHHHHcCCCEEEECCcc---h-h-HHHH----HHHHHCCCCEEE
Confidence 33444444444333324555553333 55556677777777788888887533 1 1 2222 233333367888
Q ss_pred EEeCC
Q psy9602 227 YYHIP 231 (239)
Q Consensus 227 LYN~P 231 (239)
+.+.+
T Consensus 85 ~~~~~ 89 (260)
T cd06304 85 IIDGV 89 (260)
T ss_pred EecCc
Confidence 87764
No 495
>PRK07094 biotin synthase; Provisional
Probab=60.40 E-value=98 Score=28.19 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC--CCCCCC------CCHHHHHHHH
Q psy9602 142 SMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLP--ELFFTP------ASVEDLVDYL 213 (239)
Q Consensus 142 sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~P--P~y~~~------~s~e~iv~yf 213 (239)
..|.+++.+.++.+.+.--....-+|+|....+.++..+.++.+.+++++.+-+.+ |+...| .+.++..+.+
T Consensus 161 ~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~ 240 (323)
T PRK07094 161 GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVL 240 (323)
T ss_pred CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHH
Confidence 47889999999999875211134577888888999999999999999999765543 432111 1455555555
Q ss_pred HHHHhhCCC
Q psy9602 214 RDVGEAAPA 222 (239)
Q Consensus 214 ~~Vaeatpd 222 (239)
...-...|+
T Consensus 241 a~~R~~lp~ 249 (323)
T PRK07094 241 ALLRLLLPD 249 (323)
T ss_pred HHHHHhCcC
Confidence 444444443
No 496
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=60.39 E-value=60 Score=31.18 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=51.6
Q ss_pred EEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcEEEEeC
Q psy9602 166 VMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHI 230 (239)
Q Consensus 166 VIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~VaeatpdLPIiLYN~ 230 (239)
-|......+.+.+...++.|++.+.-.++-..|...+....+.+..+.+.+++..++.||.|+--
T Consensus 17 AV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLD 81 (347)
T TIGR01521 17 GVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQD 81 (347)
T ss_pred eEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 44466777889999999999999999999998865443356889999999999883389998754
No 497
>PLN02826 dihydroorotate dehydrogenase
Probab=60.39 E-value=33 Score=33.46 Aligned_cols=49 Identities=6% Similarity=-0.012 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFT 202 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~ 202 (239)
.+++..+.+.+++ ++|||.-=|=.+-+++++.+. +||++|.+....+|.
T Consensus 328 l~~v~~l~~~~~~-~ipIIgvGGI~sg~Da~e~i~----AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 328 TEVLREMYRLTRG-KIPLVGCGGVSSGEDAYKKIR----AGASLVQLYTAFAYE 376 (409)
T ss_pred HHHHHHHHHHhCC-CCcEEEECCCCCHHHHHHHHH----hCCCeeeecHHHHhc
Confidence 5677777778887 889886555567778887765 799999999887664
No 498
>smart00642 Aamy Alpha-amylase domain.
Probab=60.27 E-value=71 Score=26.86 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCCCCCC----------------C----CCHHHHHHHHHHHHhhCCCCcEEEEeCC
Q psy9602 172 GTCFQEVVELAKHAESLNVHAVLCLPELFFT----------------P----ASVEDLVDYLRDVGEAAPATPLFYYHIP 231 (239)
Q Consensus 172 ~~St~eAIelar~A~~aGAdaVlV~PP~y~~----------------~----~s~e~iv~yf~~VaeatpdLPIiLYN~P 231 (239)
..+.+..++...+.+++|+++|.++|++-.. . .+.+++.+..+++.+. ++-||+--.|
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~--Gi~vilD~V~ 92 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHAR--GIKVILDVVI 92 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHC--CCEEEEEECC
Confidence 3458888989899999999999999974211 0 1557777777777765 7888886666
Q ss_pred CCc
Q psy9602 232 MFT 234 (239)
Q Consensus 232 ~~T 234 (239)
..+
T Consensus 93 NH~ 95 (166)
T smart00642 93 NHT 95 (166)
T ss_pred CCC
Confidence 554
No 499
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=60.23 E-value=23 Score=32.56 Aligned_cols=63 Identities=21% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHHhh
Q psy9602 149 KLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFFTPASVEDLVDYLRDVGEA 219 (239)
Q Consensus 149 ~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~~~~s~e~iv~yf~~Vaea 219 (239)
...++..++.. ++|||+..|=.+..++.+ |.++|||+||+-.-..-.. ++-.+-.-|+.-.++
T Consensus 164 ~~~l~~i~~~~---~vPvIvDAGiG~pSdaa~----AMElG~daVLvNTAiA~A~-dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 164 PYNLRIIIERA---DVPVIVDAGIGTPSDAAQ----AMELGADAVLVNTAIAKAK-DPVAMARAFKLAVEA 226 (247)
T ss_dssp HHHHHHHHHHG---SSSBEEES---SHHHHHH----HHHTT-SEEEESHHHHTSS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCcEEEeCCCCCHHHHHH----HHHcCCceeehhhHHhccC-CHHHHHHHHHHHHHH
No 500
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=60.09 E-value=39 Score=29.59 Aligned_cols=79 Identities=16% Similarity=0.083 Sum_probs=48.0
Q ss_pred HhhhcCCCCEEEeccccCCcCCCHHHHHHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Q psy9602 122 TLRMAPIIDQMVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHAVLCLPELFF 201 (239)
Q Consensus 122 ~~~~~gg~glvV~GstGE~~sLT~eER~~li~~vve~~~G~rvpVIaGVg~~St~eAIelar~A~~aGAdaVlV~PP~y~ 201 (239)
+..++.|..+++.+..- .++++..... ..+++.| ..+..| +..|.+.|+|.+-+.|-.
T Consensus 77 ~~a~~aGA~fivsp~~~----------~~v~~~~~~~----~~~~~~G--~~t~~E----~~~A~~~Gad~vk~Fpa~-- 134 (206)
T PRK09140 77 DRLADAGGRLIVTPNTD----------PEVIRRAVAL----GMVVMPG--VATPTE----AFAALRAGAQALKLFPAS-- 134 (206)
T ss_pred HHHHHcCCCEEECCCCC----------HHHHHHHHHC----CCcEEcc--cCCHHH----HHHHHHcCCCEEEECCCC--
Confidence 34467777776664432 2344444421 4677777 455554 466788999999985521
Q ss_pred CCCCHHHHHHHHHHHHhhCC-CCcEEE
Q psy9602 202 TPASVEDLVDYLRDVGEAAP-ATPLFY 227 (239)
Q Consensus 202 ~~~s~e~iv~yf~~Vaeatp-dLPIiL 227 (239)
.. + .+|++.+....| ++|++-
T Consensus 135 ~~-G----~~~l~~l~~~~~~~ipvva 156 (206)
T PRK09140 135 QL-G----PAGIKALRAVLPPDVPVFA 156 (206)
T ss_pred CC-C----HHHHHHHHhhcCCCCeEEE
Confidence 11 2 567777877774 588764
Done!