RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9602
(239 letters)
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 69.9 bits (170), Expect = 9e-15
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V GTTGE ++ ER+ L + E V+V G ++ ++L K AE L +
Sbjct: 41 VLGTTGESPTVNEDERE-KLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANG 99
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMF 233
VL + + P + E L + + + E + Y++P
Sbjct: 100 VLVVTPYYNKP-TQEGLYQHYKYISERTDL-GIVVYNVPGR 138
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus
anthracis [TaxId: 1392]}
Length = 292
Score = 67.6 bits (164), Expect = 5e-14
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V GTTGE ++T+ E+ ++ V+ G ++L K A + V A
Sbjct: 43 VGGTTGESPTLTSEEKVALYRHVVSVVD-KRVPVIAGTGSNNTHASIDLTKKATEVGVDA 101
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
V+ + + P S E + + + + E+ P P+ Y++P + V +
Sbjct: 102 VMLVAPYYNKP-SQEGMYQHFKAIAESTPL-PVMLYNVPGRSIVQI 145
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 296
Score = 61.5 bits (148), Expect = 8e-12
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
+V+GTTGE + T E+ L A + + G + LAK + H
Sbjct: 46 VVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGA-GTYDTAHSIRLAKACAAEGAH 104
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFT 234
+L + + P L + V +A P+ Y IP +
Sbjct: 105 GLLVVTPYYSKP-PQRGLQAHFTAVADATE-LPMLLYDIPGRS 145
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase
{Escherichia coli [TaxId: 562]}
Length = 292
Score = 52.2 bits (124), Expect = 9e-09
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 3/106 (2%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
GTTGE ++ E ++ + V+ G E + L + +
Sbjct: 41 SVGTTGESATLNHDEHA-DVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVG 99
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRVTL 238
L + + P S E L + + + E P Y++P T L
Sbjct: 100 CLTVTPYYNRP-SQEGLYQHFKAIAEHTDL-PQILYNVPSATGCDL 143
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus
influenzae [TaxId: 727]}
Length = 293
Score = 37.3 bits (85), Expect = 9e-04
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 132 MVNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVH 191
V G+TGE ++T E+K EAK ++ Q+G +E VEL K+A L
Sbjct: 43 YVGGSTGENFMLSTEEKKEIFRIAKDEAKDQ-IALIAQVGSVNLKEAVELGKYATELGYD 101
Query: 192 AVLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMFTRV 236
+ + ++ + + D A + + Y IP T V
Sbjct: 102 CLSAVTPFYY--KFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGV 144
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 35.0 bits (79), Expect = 0.005
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQEVVELAKHAESLNVHA 192
V G+TGE + +ER+ + + E ++ +G E +LA A+ A
Sbjct: 42 VGGSTGEAFVQSLSERE-QVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDA 100
Query: 193 VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYYHIPMF 233
V + ++ P S E+ D+ R + ++A P+ Y+IP
Sbjct: 101 VSAVTPFYY-PFSFEEHCDHYRAIIDSADGLPMVVYNIPAR 140
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 293
Score = 33.2 bits (74), Expect = 0.021
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 133 VNGTTGEGVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCFQ 176
VNGTTG G S++ E+ NL+A F V +
Sbjct: 39 VNGTTGLGPSLSPEEKLENLKAVYDVTNKIIFQVGGLNLDDAIR 82
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis
[TaxId: 1423]}
Length = 278
Score = 28.8 bits (63), Expect = 0.55
Identities = 12/104 (11%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 140 GVSMTTAERKLNLEAWMTEAKTHGFTVMVQIGGTCF-------QEVVELAKHAESLNVHA 192
+ T NL+ + + HG+ ++I + +LA++ ++ ++
Sbjct: 4 CFNEATTLENSNLKLDLELCEKHGYD-YIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKP 62
Query: 193 VLCLPELFFT---PASVEDLVDYLRDVGEAAPATPLFYYHIPMF 233
+ +FF +++ + + E + Y
Sbjct: 63 LALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVKYVVAVPL 106
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 281
Score = 28.2 bits (61), Expect = 0.90
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 175 FQEVVELAKHAESLNVHA-VLCLPELFFTPASVEDLVDYLRDVGEAAPATPLFYY 228
Q + A ++ LPE F +P S + Y + P+T + +
Sbjct: 28 LQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFL 82
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 538
Score = 27.5 bits (61), Expect = 1.7
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 102 WTIIITAGLLLLTC-MLLVGITL 123
W+I +TA L+LL +L IT+
Sbjct: 217 WSIFVTAWLILLALPVLAGAITM 239
>d1luca_ c.1.16.1 (A:) Bacterial luciferase alpha chain, LuxA
{Vibrio harveyi [TaxId: 669]}
Length = 355
Score = 26.7 bits (57), Expect = 2.8
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 175 FQEVVELAKHAESLNVHAVLCLPELFFTP 203
+ +V L K +E V L E FT
Sbjct: 21 MKRLVNLGKASEGCGFDTVW-LLEHHFTE 48
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 25.3 bits (55), Expect = 2.8
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 75 KRRRKRLRNAHGEVVMIDPSDLPKRAKWTIIITA 108
KR R + + E+ + K K ++ A
Sbjct: 15 KRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKA 48
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 102
Score = 25.0 bits (55), Expect = 3.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 74 RKRRRKRLRNAHGEVVMIDPSDLPKRAKWTII 105
R + R+ G+VV++ P ++ K II
Sbjct: 50 PGRLKNRIWVREGDVVIVKPWEVQGDQKCDII 81
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 25.9 bits (57), Expect = 4.9
Identities = 12/62 (19%), Positives = 20/62 (32%)
Query: 26 EAEKAAQTIAQRARRGGHDRSKRFTQTRKVDNHHNSRPAASQIRRKKKRKRRRKRLRNAH 85
K Q IAQ G D +K + A + + K + R+ +
Sbjct: 86 NTGKTPQEIAQAISAGELDLTKLPMKDLFEVKTKALSMAKETVEKIKNNRSIRESRFEEY 145
Query: 86 GE 87
G+
Sbjct: 146 GD 147
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate
deaminase/isomerase NagB {Escherichia coli [TaxId:
562]}
Length = 266
Score = 25.5 bits (55), Expect = 5.4
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 21 NSAEEEAEKAAQTIAQRARRGGHDRSKRFT 50
+AE+ + AA+ I R + F
Sbjct: 7 TTAEQVGKWAARHIVNRINAFKPTADRPFV 36
>d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB {Vibrio
harveyi [TaxId: 669]}
Length = 320
Score = 25.7 bits (55), Expect = 5.6
Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 175 FQEVVELAKHAESLNVHAVLCLPELFFTP 203
+E+++ A + + L + + E F+
Sbjct: 21 IEEMLDTAHYVDQLKFDTLA-VYENHFSN 48
>d1eara1 b.107.1.1 (A:1-74) Urease metallochaperone UreE,
N-terminal domain {Bacillus pasteurii [TaxId: 1474]}
Length = 74
Score = 24.0 bits (52), Expect = 5.6
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 74 RKRRRKRLRNAHGEVVMID 92
+R R +G + I
Sbjct: 30 LNKRILRKETENGTDIAIK 48
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 321
Score = 25.8 bits (55), Expect = 5.7
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 175 FQEVVELAKHAESLNVHAVLCLPELFFTP 203
+++V+L K AE + + + +
Sbjct: 13 IEKIVKLVKLAEDVGFEYAW-ITDHYNNK 40
>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 347
Score = 25.5 bits (54), Expect = 7.3
Identities = 4/31 (12%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 176 QEVVELAKHAESLNVHAVLCLPELFFTPASV 206
++ L K AE + + + + +
Sbjct: 16 TKIAHLIKVAEDNGFEYAW-ICDHYNNYSYM 45
>d2pbdp1 d.110.1.1 (P:1-139) Profilin (actin-binding protein) {Human
(Homo sapiens), isoform I [TaxId: 9606]}
Length = 139
Score = 24.9 bits (54), Expect = 7.5
Identities = 2/12 (16%), Positives = 5/12 (41%)
Query: 206 VEDLVDYLRDVG 217
++ +LR
Sbjct: 127 CYEMASHLRRSQ 138
>d1rhca_ c.1.16.3 (A:) Coenzyme F420 dependent secondary alcohol
dehydrogenase {Archaeon Methanoculleus thermophilicus
[TaxId: 2200]}
Length = 330
Score = 25.1 bits (53), Expect = 8.3
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 176 QEVVELAKHAESLNVHAVLCLPELFFTP 203
+ +E A AE + +V + + F
Sbjct: 17 MDALEQAIRAEKVGFDSVW-VDDHFHPW 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.382
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 864,527
Number of extensions: 38693
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 30
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)