Query psy9603
Match_columns 150
No_of_seqs 146 out of 187
Neff 3.9
Searched_HMMs 46136
Date Sat Aug 17 00:02:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04582 Reo_sigmaC: Reovirus 97.6 3.3E-05 7.2E-10 67.9 2.2 23 5-27 78-100 (326)
2 PF04728 LPP: Lipoprotein leuc 97.6 0.00072 1.6E-08 46.2 7.9 40 12-51 4-43 (56)
3 PF10805 DUF2730: Protein of u 97.4 0.001 2.2E-08 49.3 8.0 57 3-59 34-92 (106)
4 PF04728 LPP: Lipoprotein leuc 97.4 0.00088 1.9E-08 45.8 6.6 35 20-54 5-39 (56)
5 PF04582 Reo_sigmaC: Reovirus 97.3 0.00025 5.4E-09 62.5 4.4 56 6-61 93-148 (326)
6 PF07889 DUF1664: Protein of u 97.3 0.0019 4.2E-08 50.0 8.7 56 4-59 68-123 (126)
7 PF07798 DUF1640: Protein of u 97.0 0.0049 1.1E-07 48.9 8.4 19 26-44 74-92 (177)
8 PF07798 DUF1640: Protein of u 97.0 0.0063 1.4E-07 48.2 8.6 17 46-62 138-154 (177)
9 PF11559 ADIP: Afadin- and alp 96.9 0.0079 1.7E-07 46.0 8.8 58 4-61 66-123 (151)
10 PF07889 DUF1664: Protein of u 96.9 0.006 1.3E-07 47.3 7.9 54 9-62 66-119 (126)
11 PF07106 TBPIP: Tat binding pr 96.9 0.0061 1.3E-07 47.5 8.0 57 5-61 80-138 (169)
12 PF08317 Spc7: Spc7 kinetochor 96.9 0.0073 1.6E-07 52.0 9.0 56 4-59 209-264 (325)
13 COG3883 Uncharacterized protei 96.8 0.0087 1.9E-07 51.6 8.9 40 8-47 56-95 (265)
14 COG3883 Uncharacterized protei 96.8 0.0071 1.5E-07 52.1 8.3 54 5-58 46-99 (265)
15 PF06005 DUF904: Protein of un 96.8 0.02 4.3E-07 40.4 9.1 62 1-62 1-62 (72)
16 PF05701 WEMBL: Weak chloropla 96.8 0.0069 1.5E-07 55.5 8.5 43 6-48 283-325 (522)
17 PF02403 Seryl_tRNA_N: Seryl-t 96.7 0.013 2.7E-07 42.5 7.9 58 5-62 37-97 (108)
18 PF06810 Phage_GP20: Phage min 96.7 0.011 2.3E-07 46.7 8.0 16 33-48 52-67 (155)
19 PF05701 WEMBL: Weak chloropla 96.7 0.0095 2.1E-07 54.5 8.8 45 3-47 287-331 (522)
20 PRK10884 SH3 domain-containing 96.7 0.013 2.9E-07 48.3 8.8 59 3-61 99-168 (206)
21 PF10779 XhlA: Haemolysin XhlA 96.6 0.014 3.1E-07 40.3 7.4 50 7-56 2-51 (71)
22 PF10805 DUF2730: Protein of u 96.6 0.015 3.3E-07 43.1 7.9 51 3-53 41-93 (106)
23 PF06810 Phage_GP20: Phage min 96.6 0.017 3.8E-07 45.5 8.6 52 5-56 14-68 (155)
24 PF11559 ADIP: Afadin- and alp 96.6 0.025 5.5E-07 43.2 9.0 51 5-55 74-124 (151)
25 PF07106 TBPIP: Tat binding pr 96.6 0.011 2.3E-07 46.2 7.1 62 4-65 72-135 (169)
26 PF07439 DUF1515: Protein of u 96.4 0.021 4.5E-07 43.9 7.8 55 5-59 9-67 (112)
27 PF08317 Spc7: Spc7 kinetochor 96.4 0.025 5.5E-07 48.7 8.9 50 3-52 215-264 (325)
28 PF06103 DUF948: Bacterial pro 96.3 0.049 1.1E-06 38.4 8.8 53 4-56 26-78 (90)
29 PF02403 Seryl_tRNA_N: Seryl-t 96.3 0.026 5.6E-07 40.8 7.4 58 3-60 42-102 (108)
30 PRK15396 murein lipoprotein; P 96.3 0.029 6.3E-07 40.4 7.4 33 13-45 27-59 (78)
31 PRK15396 murein lipoprotein; P 96.2 0.02 4.4E-07 41.2 6.3 37 19-55 26-62 (78)
32 PF06103 DUF948: Bacterial pro 96.2 0.063 1.4E-06 37.8 8.8 54 7-60 22-75 (90)
33 PF10349 WWbp: WW-domain ligan 96.2 0.067 1.4E-06 40.4 9.3 38 99-136 75-112 (116)
34 PHA02607 wac fibritin; Provisi 96.0 0.033 7.3E-07 51.2 8.4 68 2-69 57-136 (454)
35 smart00787 Spc7 Spc7 kinetocho 96.0 0.047 1E-06 47.6 8.9 54 6-59 206-259 (312)
36 PF10779 XhlA: Haemolysin XhlA 96.0 0.053 1.2E-06 37.4 7.3 50 2-51 4-53 (71)
37 TIGR03545 conserved hypothetic 95.9 0.042 9E-07 51.3 8.7 45 3-47 190-241 (555)
38 KOG2391|consensus 95.9 0.053 1.1E-06 48.7 8.7 63 2-64 223-285 (365)
39 PF13870 DUF4201: Domain of un 95.9 0.091 2E-06 41.2 9.1 64 6-69 79-142 (177)
40 smart00787 Spc7 Spc7 kinetocho 95.8 0.057 1.2E-06 47.0 8.6 28 24-51 210-237 (312)
41 PF05377 FlaC_arch: Flagella a 95.8 0.085 1.8E-06 36.0 7.4 36 6-41 2-37 (55)
42 PRK10884 SH3 domain-containing 95.8 0.078 1.7E-06 43.8 8.7 58 3-60 92-153 (206)
43 PRK13729 conjugal transfer pil 95.8 0.42 9.1E-06 44.4 14.2 57 5-61 70-126 (475)
44 PF10349 WWbp: WW-domain ligan 95.6 0.15 3.2E-06 38.6 9.1 47 85-131 67-114 (116)
45 PF05791 Bacillus_HBL: Bacillu 95.6 0.1 2.2E-06 41.9 8.7 60 4-63 110-180 (184)
46 PF05377 FlaC_arch: Flagella a 95.5 0.061 1.3E-06 36.7 6.0 37 13-49 2-38 (55)
47 PF06005 DUF904: Protein of un 95.5 0.25 5.3E-06 34.9 9.3 55 4-58 11-65 (72)
48 PF13851 GAS: Growth-arrest sp 95.4 0.13 2.7E-06 42.1 8.7 55 5-59 28-82 (201)
49 PF02183 HALZ: Homeobox associ 95.4 0.054 1.2E-06 35.1 5.3 37 17-53 4-40 (45)
50 PHA02562 46 endonuclease subun 95.4 0.065 1.4E-06 47.7 7.4 50 14-63 230-279 (562)
51 PF05791 Bacillus_HBL: Bacillu 95.3 0.1 2.3E-06 41.7 7.8 54 4-60 103-156 (184)
52 TIGR03545 conserved hypothetic 95.3 0.068 1.5E-06 49.9 7.6 8 54-61 263-270 (555)
53 PF06008 Laminin_I: Laminin Do 95.3 0.13 2.8E-06 42.7 8.5 64 4-67 52-115 (264)
54 PRK09973 putative outer membra 95.1 0.071 1.5E-06 39.2 5.7 33 20-52 26-58 (85)
55 PHA02562 46 endonuclease subun 95.1 0.085 1.8E-06 47.0 7.3 14 45-58 233-246 (562)
56 PRK09973 putative outer membra 95.1 0.099 2.1E-06 38.4 6.4 37 12-48 25-61 (85)
57 PF10146 zf-C4H2: Zinc finger- 95.1 0.21 4.6E-06 42.0 9.2 53 10-62 52-104 (230)
58 smart00503 SynN Syntaxin N-ter 95.1 0.14 3.1E-06 36.4 7.1 13 49-61 60-72 (117)
59 PF05531 NPV_P10: Nucleopolyhe 95.0 0.13 2.9E-06 37.0 6.8 55 2-60 9-63 (75)
60 COG3352 FlaC Putative archaeal 94.9 0.13 2.9E-06 41.5 7.3 57 6-62 74-138 (157)
61 PF05008 V-SNARE: Vesicle tran 94.9 0.18 4E-06 34.4 7.0 50 6-55 27-77 (79)
62 KOG1962|consensus 94.9 0.14 3E-06 43.1 7.6 61 3-63 150-210 (216)
63 PF04977 DivIC: Septum formati 94.9 0.1 2.3E-06 35.0 5.7 39 13-51 19-57 (80)
64 PF05266 DUF724: Protein of un 94.9 0.22 4.7E-06 40.7 8.5 20 40-59 160-179 (190)
65 PLN02678 seryl-tRNA synthetase 94.8 0.16 3.4E-06 46.4 8.2 64 6-69 42-115 (448)
66 PF00170 bZIP_1: bZIP transcri 94.7 0.17 3.8E-06 33.8 6.4 33 13-45 28-60 (64)
67 PF02183 HALZ: Homeobox associ 94.6 0.13 2.9E-06 33.3 5.5 35 25-59 5-39 (45)
68 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.6 0.43 9.3E-06 36.2 9.1 22 6-27 12-33 (132)
69 PF04977 DivIC: Septum formati 94.6 0.13 2.8E-06 34.5 5.6 39 6-44 19-57 (80)
70 PF05266 DUF724: Protein of un 94.6 0.33 7.1E-06 39.7 8.9 15 47-61 160-174 (190)
71 PF12325 TMF_TATA_bd: TATA ele 94.6 0.42 9E-06 36.7 9.0 15 46-60 96-110 (120)
72 PF12718 Tropomyosin_1: Tropom 94.5 0.34 7.4E-06 37.7 8.5 60 2-61 5-64 (143)
73 COG3352 FlaC Putative archaeal 94.5 0.3 6.6E-06 39.5 8.4 60 2-61 77-144 (157)
74 PF07439 DUF1515: Protein of u 94.5 0.27 5.8E-06 37.9 7.7 14 2-15 13-26 (112)
75 COG4942 Membrane-bound metallo 94.5 0.25 5.5E-06 45.2 8.8 55 4-58 45-99 (420)
76 PRK13169 DNA replication intia 94.4 0.35 7.5E-06 36.8 8.1 54 7-60 4-57 (110)
77 PF06156 DUF972: Protein of un 94.4 0.38 8.2E-06 36.2 8.2 54 7-60 4-57 (107)
78 PF00038 Filament: Intermediat 94.4 0.4 8.7E-06 40.0 9.2 8 52-59 268-275 (312)
79 PF08700 Vps51: Vps51/Vps67; 94.3 0.48 1E-05 32.6 8.1 56 5-60 20-86 (87)
80 PF03915 AIP3: Actin interacti 94.3 0.33 7.1E-06 44.3 9.2 56 3-58 212-272 (424)
81 PF04156 IncA: IncA protein; 94.3 0.37 8.1E-06 37.7 8.4 42 5-46 82-123 (191)
82 KOG3156|consensus 94.3 0.36 7.8E-06 40.9 8.7 16 46-61 181-196 (220)
83 KOG0250|consensus 94.3 0.18 3.9E-06 50.7 7.9 58 3-60 315-372 (1074)
84 PF08614 ATG16: Autophagy prot 94.2 0.47 1E-05 38.0 8.9 53 6-58 118-170 (194)
85 PRK05431 seryl-tRNA synthetase 94.1 0.27 5.9E-06 44.1 8.2 68 6-73 44-114 (425)
86 KOG4603|consensus 94.1 0.48 1E-05 39.5 8.8 60 2-61 84-145 (201)
87 PF05278 PEARLI-4: Arabidopsis 94.0 0.43 9.3E-06 41.5 8.8 59 4-62 200-258 (269)
88 TIGR00414 serS seryl-tRNA synt 93.9 0.34 7.3E-06 43.4 8.4 64 7-70 40-114 (418)
89 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.9 0.64 1.4E-05 35.3 8.8 34 4-37 3-36 (132)
90 PF11932 DUF3450: Protein of u 93.9 0.56 1.2E-05 38.7 9.1 53 6-58 44-96 (251)
91 PF00038 Filament: Intermediat 93.9 0.6 1.3E-05 39.0 9.3 24 22-45 213-236 (312)
92 PF15450 DUF4631: Domain of un 93.9 0.31 6.7E-06 45.8 8.2 63 2-64 410-480 (531)
93 COG4942 Membrane-bound metallo 93.8 0.4 8.6E-06 44.0 8.6 59 5-63 39-97 (420)
94 PF13851 GAS: Growth-arrest sp 93.7 0.6 1.3E-05 38.1 8.9 48 14-61 30-77 (201)
95 PLN02678 seryl-tRNA synthetase 93.7 0.36 7.9E-06 44.1 8.3 58 6-63 35-102 (448)
96 PF00804 Syntaxin: Syntaxin; 93.6 1.1 2.4E-05 30.6 8.9 13 49-61 59-71 (103)
97 TIGR01554 major_cap_HK97 phage 93.6 0.3 6.5E-06 42.2 7.3 55 3-57 5-59 (378)
98 PF10267 Tmemb_cc2: Predicted 93.6 0.39 8.4E-06 43.5 8.2 26 2-27 217-242 (395)
99 PF09730 BicD: Microtubule-ass 93.6 0.44 9.5E-06 46.2 9.0 37 4-40 34-70 (717)
100 TIGR00606 rad50 rad50. This fa 93.6 0.43 9.4E-06 48.0 9.2 64 4-67 751-820 (1311)
101 PF08172 CASP_C: CASP C termin 93.6 0.52 1.1E-05 40.0 8.5 55 6-60 81-135 (248)
102 PF05529 Bap31: B-cell recepto 93.5 0.5 1.1E-05 37.4 7.9 34 25-58 154-187 (192)
103 PLN02320 seryl-tRNA synthetase 93.5 0.36 7.8E-06 44.9 8.0 64 6-69 102-174 (502)
104 KOG2391|consensus 93.5 0.4 8.7E-06 43.2 8.0 56 8-63 222-277 (365)
105 PF05529 Bap31: B-cell recepto 93.5 0.5 1.1E-05 37.5 7.8 59 5-63 126-185 (192)
106 PRK05431 seryl-tRNA synthetase 93.5 0.44 9.4E-06 42.8 8.3 62 4-65 35-99 (425)
107 PF10146 zf-C4H2: Zinc finger- 93.5 0.67 1.5E-05 39.0 8.9 46 2-47 58-103 (230)
108 TIGR03185 DNA_S_dndD DNA sulfu 93.5 0.49 1.1E-05 44.1 8.9 45 4-48 421-465 (650)
109 PF06008 Laminin_I: Laminin Do 93.4 0.61 1.3E-05 38.7 8.5 55 4-58 59-113 (264)
110 PF04102 SlyX: SlyX; InterPro 93.4 0.45 9.8E-06 32.8 6.5 52 1-52 1-52 (69)
111 PRK10803 tol-pal system protei 93.4 0.56 1.2E-05 39.6 8.3 43 15-57 58-100 (263)
112 TIGR03185 DNA_S_dndD DNA sulfu 93.3 0.4 8.6E-06 44.7 8.0 35 25-59 428-462 (650)
113 PF08614 ATG16: Autophagy prot 93.2 0.44 9.5E-06 38.1 7.1 49 9-57 107-155 (194)
114 PRK10803 tol-pal system protei 93.1 0.42 9.1E-06 40.3 7.2 44 8-51 58-101 (263)
115 PRK00888 ftsB cell division pr 93.0 0.36 7.8E-06 35.9 6.0 58 13-70 29-90 (105)
116 smart00503 SynN Syntaxin N-ter 93.0 0.75 1.6E-05 32.6 7.4 19 10-28 7-25 (117)
117 TIGR01554 major_cap_HK97 phage 92.9 0.73 1.6E-05 39.9 8.6 55 7-61 2-56 (378)
118 PF09726 Macoilin: Transmembra 92.9 0.34 7.3E-06 46.6 7.1 56 3-58 424-479 (697)
119 PF05667 DUF812: Protein of un 92.8 0.73 1.6E-05 43.6 9.0 54 3-56 327-380 (594)
120 KOG2264|consensus 92.6 0.62 1.4E-05 45.1 8.3 48 4-51 93-140 (907)
121 TIGR00414 serS seryl-tRNA synt 92.6 0.76 1.7E-05 41.2 8.5 25 8-32 34-58 (418)
122 PF11932 DUF3450: Protein of u 92.6 0.87 1.9E-05 37.6 8.3 8 30-37 82-89 (251)
123 PF10211 Ax_dynein_light: Axon 92.6 1.2 2.7E-05 36.0 8.9 56 6-61 122-185 (189)
124 COG4238 Murein lipoprotein [Ce 92.5 0.81 1.8E-05 33.3 6.9 45 11-55 25-69 (78)
125 PRK09039 hypothetical protein; 92.5 0.89 1.9E-05 39.9 8.6 53 3-55 143-199 (343)
126 PF04012 PspA_IM30: PspA/IM30 92.4 1.3 2.8E-05 35.5 8.9 48 6-53 93-140 (221)
127 PF03961 DUF342: Protein of un 92.3 0.94 2E-05 40.5 8.7 59 3-61 333-404 (451)
128 PF05008 V-SNARE: Vesicle tran 92.3 0.71 1.5E-05 31.5 6.3 53 10-62 24-77 (79)
129 PRK15422 septal ring assembly 92.2 1.5 3.3E-05 31.9 8.0 38 6-43 6-43 (79)
130 PF02994 Transposase_22: L1 tr 92.0 0.15 3.3E-06 45.1 3.3 29 29-57 155-183 (370)
131 PHA02607 wac fibritin; Provisi 91.9 0.46 1E-05 43.9 6.4 55 12-66 93-158 (454)
132 PLN02320 seryl-tRNA synthetase 91.8 0.85 1.8E-05 42.5 8.0 57 6-62 95-160 (502)
133 KOG0250|consensus 91.8 0.68 1.5E-05 46.7 7.8 56 6-61 304-359 (1074)
134 PRK00888 ftsB cell division pr 91.7 0.62 1.4E-05 34.6 5.9 36 19-54 28-63 (105)
135 PF09304 Cortex-I_coil: Cortex 91.6 2.6 5.7E-05 32.2 9.2 55 5-59 17-71 (107)
136 PF08172 CASP_C: CASP C termin 91.6 0.93 2E-05 38.5 7.5 46 7-52 89-134 (248)
137 PRK13729 conjugal transfer pil 91.6 4.5 9.7E-05 37.8 12.4 58 10-67 68-125 (475)
138 PRK02119 hypothetical protein; 91.5 3.4 7.4E-05 29.0 9.1 56 5-60 3-58 (73)
139 KOG1962|consensus 91.5 0.9 2E-05 38.3 7.2 43 5-47 159-201 (216)
140 PF04111 APG6: Autophagy prote 91.4 1.9 4.1E-05 37.4 9.4 40 5-44 44-83 (314)
141 TIGR02132 phaR_Bmeg polyhydrox 91.4 1.8 3.9E-05 36.0 8.6 19 3-21 71-89 (189)
142 PF02994 Transposase_22: L1 tr 91.3 0.48 1E-05 42.0 5.6 8 48-55 167-174 (370)
143 PF01920 Prefoldin_2: Prefoldi 91.2 3.7 8E-05 28.7 9.2 33 29-61 66-98 (106)
144 PF04111 APG6: Autophagy prote 91.1 1.8 3.9E-05 37.6 9.0 46 3-48 49-94 (314)
145 PRK15422 septal ring assembly 91.1 3.1 6.6E-05 30.4 8.6 53 6-58 20-72 (79)
146 COG3074 Uncharacterized protei 91.0 2.3 5.1E-05 30.8 7.9 52 8-59 8-59 (79)
147 PF05278 PEARLI-4: Arabidopsis 91.0 1.8 3.8E-05 37.7 8.7 49 6-54 209-257 (269)
148 PRK13169 DNA replication intia 91.0 1.5 3.2E-05 33.4 7.3 47 5-51 9-55 (110)
149 KOG3850|consensus 90.9 1.5 3.2E-05 40.5 8.5 27 2-28 265-291 (455)
150 PF03310 Cauli_DNA-bind: Cauli 90.9 1.5 3.3E-05 34.2 7.4 23 8-30 3-25 (121)
151 PF10874 DUF2746: Protein of u 90.9 0.95 2.1E-05 31.1 5.6 7 33-39 34-40 (57)
152 COG0172 SerS Seryl-tRNA synthe 90.8 1.4 2.9E-05 40.5 8.2 63 5-67 44-110 (429)
153 TIGR01843 type_I_hlyD type I s 90.7 2 4.4E-05 36.3 8.8 25 40-64 247-271 (423)
154 PF09304 Cortex-I_coil: Cortex 90.7 2.4 5.1E-05 32.5 8.2 54 8-61 13-66 (107)
155 PF06156 DUF972: Protein of un 90.6 1.7 3.8E-05 32.6 7.3 49 5-53 9-57 (107)
156 PF05103 DivIVA: DivIVA protei 90.5 0.19 4.2E-06 36.8 2.2 43 6-48 27-69 (131)
157 TIGR02894 DNA_bind_RsfA transc 90.5 1.9 4.1E-05 35.1 7.9 43 11-53 104-146 (161)
158 PRK04406 hypothetical protein; 90.5 4.7 0.0001 28.5 9.6 57 4-60 4-60 (75)
159 smart00338 BRLZ basic region l 90.5 1.4 3E-05 29.4 6.1 13 30-42 45-57 (65)
160 TIGR02894 DNA_bind_RsfA transc 90.4 2.3 5E-05 34.6 8.3 44 15-58 101-144 (161)
161 PF06148 COG2: COG (conserved 90.4 0.59 1.3E-05 35.1 4.7 36 13-48 64-99 (133)
162 PF07160 DUF1395: Protein of u 90.4 2.5 5.4E-05 35.7 8.9 58 8-65 19-79 (243)
163 COG0172 SerS Seryl-tRNA synthe 90.4 1.3 2.9E-05 40.6 7.7 59 4-62 36-98 (429)
164 PF14712 Snapin_Pallidin: Snap 90.3 3.4 7.4E-05 28.9 8.3 37 3-39 13-49 (92)
165 PF07989 Microtub_assoc: Micro 90.3 2 4.3E-05 30.4 7.0 21 37-57 48-68 (75)
166 PF10874 DUF2746: Protein of u 90.3 1 2.2E-05 31.0 5.3 18 31-48 25-42 (57)
167 COG4238 Murein lipoprotein [Ce 90.1 1.7 3.6E-05 31.7 6.6 38 20-57 27-64 (78)
168 PF10498 IFT57: Intra-flagella 90.1 2.3 4.9E-05 38.0 8.8 36 6-41 282-317 (359)
169 PF04012 PspA_IM30: PspA/IM30 89.9 2.8 6E-05 33.6 8.5 41 5-45 99-139 (221)
170 TIGR00998 8a0101 efflux pump m 89.8 3.2 6.9E-05 34.6 9.0 48 5-52 81-128 (334)
171 KOG0971|consensus 89.7 1.7 3.6E-05 44.0 8.3 31 28-58 328-358 (1243)
172 TIGR02209 ftsL_broad cell divi 89.7 1.7 3.6E-05 29.9 6.2 33 13-45 26-58 (85)
173 PRK01156 chromosome segregatio 89.7 2.2 4.8E-05 40.8 8.9 29 11-39 688-716 (895)
174 PF12732 YtxH: YtxH-like prote 89.6 3.1 6.7E-05 28.5 7.4 36 22-60 37-73 (74)
175 KOG2264|consensus 89.6 1.6 3.5E-05 42.4 7.8 46 12-57 94-139 (907)
176 PF06148 COG2: COG (conserved 89.6 0.64 1.4E-05 34.9 4.3 41 6-46 64-104 (133)
177 PF07028 DUF1319: Protein of u 89.4 3.2 7E-05 32.6 8.2 38 11-48 46-83 (126)
178 PF04201 TPD52: Tumour protein 89.4 2.6 5.5E-05 34.3 7.9 50 13-62 31-85 (162)
179 PF01166 TSC22: TSC-22/dip/bun 89.4 0.64 1.4E-05 32.2 3.8 29 32-60 14-42 (59)
180 PF03915 AIP3: Actin interacti 89.4 3 6.5E-05 38.2 9.2 18 42-59 249-266 (424)
181 PRK02793 phi X174 lysis protei 89.4 5.6 0.00012 27.8 9.1 52 9-60 6-57 (72)
182 PF04201 TPD52: Tumour protein 89.4 2.8 6E-05 34.1 8.0 54 3-56 28-86 (162)
183 PF06120 Phage_HK97_TLTM: Tail 89.4 3 6.6E-05 36.6 8.9 49 21-69 70-118 (301)
184 PRK04325 hypothetical protein; 89.3 5.3 0.00011 28.0 8.5 57 5-61 3-59 (74)
185 PF10498 IFT57: Intra-flagella 89.3 2.9 6.3E-05 37.3 8.8 58 6-63 275-345 (359)
186 PRK04778 septation ring format 89.2 2.5 5.4E-05 39.1 8.7 51 9-59 381-431 (569)
187 PRK04778 septation ring format 89.2 2.4 5.1E-05 39.3 8.5 42 6-47 385-426 (569)
188 PF10211 Ax_dynein_light: Axon 89.2 3.1 6.7E-05 33.7 8.3 27 22-48 124-150 (189)
189 PF15397 DUF4618: Domain of un 89.2 1.7 3.7E-05 37.5 7.1 23 30-52 198-220 (258)
190 PF07902 Gp58: gp58-like prote 89.2 1.2 2.7E-05 42.5 6.7 43 6-48 263-305 (601)
191 PF09738 DUF2051: Double stran 89.2 2.9 6.3E-05 36.6 8.6 62 5-66 113-174 (302)
192 PF12732 YtxH: YtxH-like prote 89.2 1.8 3.9E-05 29.6 6.0 30 8-37 30-60 (74)
193 PF07200 Mod_r: Modifier of ru 89.1 4.2 9.1E-05 30.8 8.6 46 8-53 31-76 (150)
194 PF07160 DUF1395: Protein of u 89.0 3.4 7.3E-05 34.9 8.7 46 3-48 21-66 (243)
195 PF10224 DUF2205: Predicted co 89.0 5.7 0.00012 28.7 8.7 57 4-60 8-65 (80)
196 PF07246 Phlebovirus_NSM: Phle 89.0 1.8 3.8E-05 37.7 7.0 61 5-65 176-242 (264)
197 PRK02224 chromosome segregatio 88.9 2.7 5.8E-05 40.0 8.9 39 20-58 358-396 (880)
198 PHA03395 p10 fibrous body prot 88.9 3 6.5E-05 30.9 7.2 56 2-61 9-64 (87)
199 KOG0977|consensus 88.9 2.1 4.5E-05 40.6 7.9 37 9-45 153-189 (546)
200 PF12761 End3: Actin cytoskele 88.8 0.61 1.3E-05 38.8 4.0 21 2-22 101-121 (195)
201 PF08700 Vps51: Vps51/Vps67; 88.7 3.1 6.8E-05 28.5 7.0 30 23-52 56-85 (87)
202 PF04102 SlyX: SlyX; InterPro 88.7 3.7 8E-05 28.2 7.3 54 9-62 2-55 (69)
203 cd00179 SynN Syntaxin N-termin 88.7 3.8 8.2E-05 30.5 7.9 27 5-31 7-33 (151)
204 PF05667 DUF812: Protein of un 88.7 2.7 5.8E-05 39.9 8.6 53 8-60 325-377 (594)
205 PRK14160 heat shock protein Gr 88.6 1.9 4.2E-05 36.1 6.9 51 12-62 55-105 (211)
206 PF13815 Dzip-like_N: Iguana/D 88.5 2.1 4.6E-05 31.9 6.4 37 17-53 79-115 (118)
207 PF07200 Mod_r: Modifier of ru 88.4 4.1 8.9E-05 30.9 8.1 57 2-58 32-88 (150)
208 KOG2629|consensus 88.4 2.6 5.7E-05 37.2 7.8 34 29-62 158-191 (300)
209 PF03961 DUF342: Protein of un 88.3 3.3 7.2E-05 37.0 8.6 57 2-58 339-408 (451)
210 PF12329 TMF_DNA_bd: TATA elem 88.2 7 0.00015 27.4 8.5 55 6-60 14-68 (74)
211 cd00179 SynN Syntaxin N-termin 88.2 2.5 5.4E-05 31.5 6.7 25 2-26 11-35 (151)
212 KOG0971|consensus 88.2 2.7 5.8E-05 42.6 8.5 23 5-27 333-355 (1243)
213 PF12718 Tropomyosin_1: Tropom 88.1 5.2 0.00011 31.1 8.6 40 6-45 23-62 (143)
214 PF06160 EzrA: Septation ring 88.1 3.3 7.3E-05 38.4 8.8 55 2-56 377-431 (560)
215 PF03310 Cauli_DNA-bind: Cauli 88.1 2.2 4.7E-05 33.3 6.4 47 4-50 6-52 (121)
216 KOG3294|consensus 88.1 1.2 2.5E-05 38.7 5.4 9 125-133 227-235 (261)
217 KOG0995|consensus 88.0 2.9 6.2E-05 39.9 8.3 12 11-22 308-319 (581)
218 TIGR02209 ftsL_broad cell divi 88.0 2.5 5.3E-05 29.0 6.1 35 18-52 24-58 (85)
219 PF15397 DUF4618: Domain of un 88.0 1.4 3E-05 38.1 5.8 32 30-61 191-222 (258)
220 KOG3433|consensus 88.0 3.4 7.4E-05 34.7 7.9 61 3-63 80-140 (203)
221 PF13815 Dzip-like_N: Iguana/D 88.0 2.4 5.2E-05 31.6 6.4 39 23-61 78-116 (118)
222 PF03962 Mnd1: Mnd1 family; I 88.0 5.3 0.00011 32.4 8.9 24 5-28 70-93 (188)
223 PF12325 TMF_TATA_bd: TATA ele 87.9 6.8 0.00015 30.1 9.0 9 54-62 97-105 (120)
224 PF07407 Seadorna_VP6: Seadorn 87.8 2.9 6.4E-05 38.0 7.9 17 14-30 42-58 (420)
225 PF09738 DUF2051: Double stran 87.8 4.2 9.1E-05 35.6 8.7 62 2-63 117-178 (302)
226 PF05055 DUF677: Protein of un 87.8 2.2 4.8E-05 37.8 7.1 59 3-61 256-317 (336)
227 PF13166 AAA_13: AAA domain 87.7 3 6.5E-05 38.6 8.2 63 4-66 410-472 (712)
228 PF14712 Snapin_Pallidin: Snap 87.6 7.7 0.00017 27.1 8.5 30 3-32 20-49 (92)
229 PF05852 DUF848: Gammaherpesvi 87.5 3.4 7.3E-05 33.1 7.3 53 7-60 57-110 (146)
230 PF09789 DUF2353: Uncharacteri 87.4 3.3 7.2E-05 36.7 7.9 16 42-57 143-158 (319)
231 PF09726 Macoilin: Transmembra 87.4 1.7 3.6E-05 42.0 6.5 57 6-62 420-476 (697)
232 COG2433 Uncharacterized conser 87.4 2.7 5.9E-05 40.5 7.8 42 4-45 422-463 (652)
233 TIGR03752 conj_TIGR03752 integ 87.3 6.4 0.00014 36.8 10.0 22 40-61 117-138 (472)
234 PRK14549 50S ribosomal protein 87.2 3.4 7.4E-05 28.7 6.4 18 7-24 15-32 (69)
235 PF03962 Mnd1: Mnd1 family; I 87.2 6.3 0.00014 31.9 8.9 31 8-38 66-96 (188)
236 KOG0946|consensus 87.1 3.3 7.1E-05 41.4 8.4 56 8-63 661-716 (970)
237 PF05531 NPV_P10: Nucleopolyhe 87.1 3 6.6E-05 30.0 6.2 49 8-60 8-56 (75)
238 KOG4010|consensus 87.1 4.8 0.0001 33.9 8.3 21 15-35 48-68 (208)
239 PLN03229 acetyl-coenzyme A car 87.1 3.8 8.2E-05 40.3 8.7 18 49-66 669-686 (762)
240 TIGR01000 bacteriocin_acc bact 87.0 4.2 9.1E-05 36.2 8.5 25 37-61 289-313 (457)
241 TIGR02977 phageshock_pspA phag 87.0 6.4 0.00014 32.1 8.9 39 9-47 97-135 (219)
242 PF07407 Seadorna_VP6: Seadorn 87.0 3.1 6.7E-05 37.9 7.5 39 13-51 34-74 (420)
243 PRK04863 mukB cell division pr 86.9 2.7 5.9E-05 43.8 8.1 44 5-48 356-399 (1486)
244 PF10359 Fmp27_WPPW: RNA pol I 86.8 2.4 5.1E-05 38.7 6.9 63 5-67 164-235 (475)
245 PRK00736 hypothetical protein; 86.8 8.2 0.00018 26.6 8.6 50 3-59 4-53 (68)
246 KOG4674|consensus 86.8 2.8 6.1E-05 44.6 8.1 55 3-57 1235-1289(1822)
247 PF06160 EzrA: Septation ring 86.7 5 0.00011 37.3 9.1 57 3-59 100-156 (560)
248 PF12329 TMF_DNA_bd: TATA elem 86.6 8.7 0.00019 26.9 8.3 52 5-56 20-71 (74)
249 PRK02793 phi X174 lysis protei 86.6 5.8 0.00013 27.7 7.4 53 2-54 6-58 (72)
250 CHL00154 rpl29 ribosomal prote 86.6 3 6.4E-05 29.0 5.8 19 6-24 14-32 (67)
251 KOG0996|consensus 86.6 3.2 6.9E-05 42.7 8.1 49 12-60 543-591 (1293)
252 PF07989 Microtub_assoc: Micro 86.6 7.8 0.00017 27.4 8.0 27 29-55 47-73 (75)
253 PRK00295 hypothetical protein; 86.5 7.8 0.00017 26.8 7.9 44 3-46 4-47 (68)
254 KOG4603|consensus 86.5 2.7 5.9E-05 35.1 6.5 13 46-58 123-135 (201)
255 PF07902 Gp58: gp58-like prote 86.5 1.3 2.9E-05 42.3 5.2 39 5-43 269-307 (601)
256 PF09177 Syntaxin-6_N: Syntaxi 86.4 8.7 0.00019 27.5 8.4 14 45-58 83-96 (97)
257 PF05615 THOC7: Tho complex su 86.3 9.3 0.0002 28.8 8.9 30 27-56 76-105 (139)
258 COG3074 Uncharacterized protei 86.2 7.9 0.00017 28.1 7.9 53 6-58 20-72 (79)
259 TIGR02449 conserved hypothetic 86.2 9.4 0.0002 26.7 8.2 56 5-60 1-56 (65)
260 PRK04863 mukB cell division pr 86.0 4.3 9.3E-05 42.4 9.0 45 10-54 354-398 (1486)
261 PRK04654 sec-independent trans 85.9 5.1 0.00011 34.0 7.9 11 22-32 58-68 (214)
262 KOG0018|consensus 85.9 2.9 6.3E-05 42.5 7.5 41 21-61 714-754 (1141)
263 KOG0998|consensus 85.9 0.74 1.6E-05 45.1 3.4 30 5-34 492-521 (847)
264 TIGR01000 bacteriocin_acc bact 85.8 5.2 0.00011 35.7 8.4 25 31-55 290-314 (457)
265 PF02181 FH2: Formin Homology 85.6 3.7 8.1E-05 35.1 7.2 56 5-60 275-337 (370)
266 cd00890 Prefoldin Prefoldin is 85.6 3.6 7.9E-05 29.8 6.2 28 18-45 94-121 (129)
267 cd00632 Prefoldin_beta Prefold 85.6 3.8 8.2E-05 29.7 6.2 22 33-54 78-99 (105)
268 COG4026 Uncharacterized protei 85.5 6.8 0.00015 34.2 8.6 50 2-51 133-182 (290)
269 PF10234 Cluap1: Clusterin-ass 85.5 6 0.00013 34.3 8.4 52 9-60 167-218 (267)
270 PRK11020 hypothetical protein; 85.4 7.4 0.00016 30.3 8.0 65 2-66 3-93 (118)
271 TIGR00012 L29 ribosomal protei 85.3 3.1 6.8E-05 27.5 5.2 20 5-24 6-25 (55)
272 PF10267 Tmemb_cc2: Predicted 85.3 5.4 0.00012 36.3 8.3 29 5-33 213-241 (395)
273 PF01166 TSC22: TSC-22/dip/bun 85.2 1.8 3.9E-05 30.0 4.1 29 25-53 14-42 (59)
274 COG2433 Uncharacterized conser 85.1 3.9 8.4E-05 39.5 7.6 24 36-59 485-508 (652)
275 KOG1760|consensus 84.7 10 0.00023 30.0 8.6 32 29-60 85-116 (131)
276 PRK14161 heat shock protein Gr 84.7 6.6 0.00014 31.9 7.8 37 9-45 17-53 (178)
277 KOG4674|consensus 84.7 5.1 0.00011 42.8 8.8 56 4-59 1307-1366(1822)
278 TIGR01730 RND_mfp RND family e 84.7 10 0.00022 30.8 9.0 60 4-63 64-133 (322)
279 PRK04325 hypothetical protein; 84.7 9.8 0.00021 26.7 7.8 52 2-53 7-58 (74)
280 PF05103 DivIVA: DivIVA protei 84.6 0.78 1.7E-05 33.6 2.3 43 11-53 25-67 (131)
281 PF11336 DUF3138: Protein of u 84.6 3.1 6.7E-05 39.0 6.6 25 4-28 25-49 (514)
282 PF05852 DUF848: Gammaherpesvi 84.6 4.3 9.3E-05 32.5 6.6 45 3-48 60-105 (146)
283 KOG0239|consensus 84.5 4.6 0.0001 38.9 7.9 64 3-66 240-320 (670)
284 TIGR03752 conj_TIGR03752 integ 84.5 5.4 0.00012 37.3 8.1 31 29-59 113-143 (472)
285 PF07028 DUF1319: Protein of u 84.4 9.5 0.00021 30.0 8.3 39 6-44 48-86 (126)
286 COG4980 GvpP Gas vesicle prote 84.3 9 0.00019 29.5 8.0 23 3-25 38-60 (115)
287 PRK10698 phage shock protein P 84.2 8.5 0.00018 31.9 8.5 42 10-51 98-139 (222)
288 PF06120 Phage_HK97_TLTM: Tail 84.2 3.8 8.2E-05 36.0 6.7 38 29-66 71-108 (301)
289 PF03233 Cauli_AT: Aphid trans 84.2 3.5 7.6E-05 33.6 6.0 43 13-55 113-158 (163)
290 PF06216 RTBV_P46: Rice tungro 84.2 6.5 0.00014 35.0 8.1 52 9-60 62-113 (389)
291 PF09177 Syntaxin-6_N: Syntaxi 84.2 6.2 0.00013 28.3 6.7 21 3-23 7-27 (97)
292 KOG4010|consensus 84.1 6.6 0.00014 33.1 7.7 52 5-56 45-101 (208)
293 PF14197 Cep57_CLD_2: Centroso 84.1 12 0.00026 26.1 8.9 30 3-32 4-33 (69)
294 PRK00295 hypothetical protein; 84.1 12 0.00025 25.9 7.8 52 8-59 2-53 (68)
295 PF00804 Syntaxin: Syntaxin; 84.1 4.4 9.4E-05 27.6 5.7 14 42-55 59-72 (103)
296 KOG0239|consensus 84.0 6.9 0.00015 37.7 8.8 48 10-57 240-287 (670)
297 PRK02119 hypothetical protein; 84.0 10 0.00022 26.6 7.5 51 2-52 7-57 (73)
298 PRK04406 hypothetical protein; 83.9 9.5 0.00021 26.9 7.5 51 2-52 9-59 (75)
299 PF11853 DUF3373: Protein of u 83.8 1.6 3.5E-05 40.7 4.4 23 26-48 32-54 (489)
300 PF12761 End3: Actin cytoskele 83.7 5.1 0.00011 33.4 6.9 21 8-28 100-120 (195)
301 PRK14127 cell division protein 83.6 4.7 0.0001 30.7 6.1 31 26-56 38-68 (109)
302 PRK00736 hypothetical protein; 83.5 9.9 0.00021 26.3 7.3 51 16-66 3-53 (68)
303 KOG4797|consensus 83.5 7.8 0.00017 30.2 7.4 45 9-53 50-95 (123)
304 PRK10132 hypothetical protein; 83.5 4.4 9.5E-05 30.6 5.9 22 8-29 9-30 (108)
305 PRK04654 sec-independent trans 83.4 8.1 0.00017 32.8 8.0 21 28-48 57-77 (214)
306 COG3388 Predicted transcriptio 83.4 12 0.00025 28.5 8.1 26 33-58 74-99 (101)
307 PF04912 Dynamitin: Dynamitin 83.3 2 4.2E-05 37.9 4.6 26 7-32 90-115 (388)
308 PRK14160 heat shock protein Gr 83.2 10 0.00022 31.8 8.6 41 6-46 56-96 (211)
309 PF10224 DUF2205: Predicted co 83.0 10 0.00022 27.4 7.4 39 6-44 25-63 (80)
310 cd00632 Prefoldin_beta Prefold 82.9 7.3 0.00016 28.2 6.8 34 29-62 67-100 (105)
311 PF04880 NUDE_C: NUDE protein, 82.9 2.7 5.8E-05 34.1 4.8 48 7-55 3-53 (166)
312 COG1842 PspA Phage shock prote 82.8 12 0.00025 31.5 8.8 48 6-53 94-141 (225)
313 KOG3156|consensus 82.8 9.3 0.0002 32.5 8.2 23 25-47 116-138 (220)
314 PF06013 WXG100: Proteins of 1 82.6 11 0.00023 24.4 7.9 18 38-55 57-74 (86)
315 KOG4196|consensus 82.5 14 0.0003 29.4 8.6 59 3-61 46-117 (135)
316 PRK03598 putative efflux pump 82.5 7.8 0.00017 32.7 7.7 23 6-28 147-169 (331)
317 PF00261 Tropomyosin: Tropomyo 82.5 18 0.00038 29.8 9.7 61 4-64 176-236 (237)
318 TIGR00998 8a0101 efflux pump m 82.4 8.7 0.00019 31.9 7.9 35 5-39 88-122 (334)
319 KOG4687|consensus 82.4 4.1 8.8E-05 36.6 6.1 50 15-64 87-136 (389)
320 KOG0995|consensus 82.2 8.3 0.00018 36.9 8.5 25 6-30 261-285 (581)
321 cd00890 Prefoldin Prefoldin is 82.2 7.5 0.00016 28.1 6.6 33 9-41 92-124 (129)
322 PF11336 DUF3138: Protein of u 82.1 3.7 8E-05 38.5 6.0 51 11-61 25-105 (514)
323 PF09789 DUF2353: Uncharacteri 82.1 7.9 0.00017 34.4 7.9 37 23-59 77-113 (319)
324 PF14282 FlxA: FlxA-like prote 82.0 12 0.00026 27.6 7.7 52 4-55 19-74 (106)
325 PF08826 DMPK_coil: DMPK coile 82.0 13 0.00028 25.6 7.3 45 16-60 16-60 (61)
326 PF04350 PilO: Pilus assembly 81.9 3.3 7.1E-05 30.4 4.7 51 8-58 3-62 (144)
327 KOG0933|consensus 81.9 8.1 0.00017 39.5 8.6 47 8-54 819-865 (1174)
328 PF02388 FemAB: FemAB family; 81.8 5.6 0.00012 35.3 6.9 55 3-61 241-295 (406)
329 COG1842 PspA Phage shock prote 81.6 12 0.00026 31.5 8.4 51 9-59 90-140 (225)
330 PHA01750 hypothetical protein 81.6 10 0.00022 27.3 6.8 32 24-55 41-72 (75)
331 COG3879 Uncharacterized protei 81.6 12 0.00027 32.3 8.6 67 15-81 54-126 (247)
332 PF10073 DUF2312: Uncharacteri 81.5 5.1 0.00011 28.8 5.3 50 4-53 4-53 (74)
333 PF10241 KxDL: Uncharacterized 81.4 17 0.00037 26.0 8.1 33 28-60 46-78 (88)
334 PF08581 Tup_N: Tup N-terminal 81.4 17 0.00037 26.0 9.2 61 2-62 9-73 (79)
335 PRK00846 hypothetical protein; 81.3 18 0.00038 26.1 9.1 54 8-61 10-63 (77)
336 cd07596 BAR_SNX The Bin/Amphip 81.2 17 0.00036 27.9 8.6 8 9-16 122-129 (218)
337 KOG4797|consensus 81.1 9.7 0.00021 29.7 7.1 43 18-60 52-95 (123)
338 PF09969 DUF2203: Uncharacteri 81.1 11 0.00024 28.7 7.4 53 6-58 15-69 (120)
339 PF08826 DMPK_coil: DMPK coile 81.1 15 0.00033 25.2 7.5 45 8-52 15-59 (61)
340 PF10191 COG7: Golgi complex c 81.1 6.5 0.00014 38.1 7.5 23 19-41 71-93 (766)
341 PF08702 Fib_alpha: Fibrinogen 80.9 21 0.00047 27.9 9.2 61 2-62 34-127 (146)
342 PRK13922 rod shape-determining 80.9 17 0.00037 30.1 9.1 32 29-60 73-107 (276)
343 PF13166 AAA_13: AAA domain 80.7 9.7 0.00021 35.2 8.3 26 34-59 426-451 (712)
344 KOG3433|consensus 80.7 13 0.00027 31.4 8.1 55 3-57 87-141 (203)
345 PF07851 TMPIT: TMPIT-like pro 80.7 14 0.0003 33.1 8.8 28 2-29 2-29 (330)
346 smart00150 SPEC Spectrin repea 80.6 12 0.00026 24.6 6.7 20 12-31 39-58 (101)
347 PF11598 COMP: Cartilage oligo 80.5 9.1 0.0002 25.0 5.8 32 9-40 6-37 (45)
348 PF10552 ORF6C: ORF6C domain; 80.5 5 0.00011 29.8 5.3 42 7-48 4-45 (116)
349 PF13514 AAA_27: AAA domain 80.5 9.2 0.0002 38.1 8.5 34 8-41 893-926 (1111)
350 PF10359 Fmp27_WPPW: RNA pol I 80.5 6.5 0.00014 35.8 7.0 56 2-57 168-232 (475)
351 COG3750 Uncharacterized protei 80.3 11 0.00023 27.9 6.7 49 6-54 16-64 (85)
352 smart00502 BBC B-Box C-termina 80.1 17 0.00036 25.4 7.7 40 3-42 6-45 (127)
353 KOG0946|consensus 80.1 11 0.00024 37.9 8.7 51 4-54 664-714 (970)
354 KOG0964|consensus 80.0 9.6 0.00021 39.0 8.4 53 6-58 680-732 (1200)
355 PF00831 Ribosomal_L29: Riboso 80.0 12 0.00026 24.9 6.5 24 5-28 8-31 (58)
356 KOG2629|consensus 79.9 8.6 0.00019 34.1 7.2 58 6-63 138-199 (300)
357 PF06419 COG6: Conserved oligo 79.9 13 0.00029 34.9 9.0 54 5-58 39-92 (618)
358 cd00427 Ribosomal_L29_HIP Ribo 79.7 7.9 0.00017 25.6 5.5 19 6-24 8-26 (57)
359 PF04513 Baculo_PEP_C: Baculov 79.7 16 0.00035 29.0 8.1 36 30-65 83-118 (140)
360 PF15035 Rootletin: Ciliary ro 79.6 18 0.00038 29.4 8.6 14 32-45 148-161 (182)
361 PF15619 Lebercilin: Ciliary p 79.6 16 0.00034 30.0 8.3 57 6-62 14-98 (194)
362 PF05478 Prominin: Prominin; 79.6 11 0.00024 36.5 8.5 49 13-61 241-289 (806)
363 PF06193 Orthopox_A5L: Orthopo 79.6 14 0.0003 30.3 7.9 34 6-39 109-142 (166)
364 PF04740 LXG: LXG domain of WX 79.4 10 0.00022 29.7 7.0 15 6-20 108-122 (204)
365 PF01920 Prefoldin_2: Prefoldi 79.3 6.9 0.00015 27.3 5.4 36 21-56 65-100 (106)
366 PRK00461 rpmC 50S ribosomal pr 79.2 7.6 0.00016 28.4 5.7 46 5-50 9-58 (87)
367 TIGR02977 phageshock_pspA phag 79.1 22 0.00047 29.0 9.0 43 6-48 101-143 (219)
368 PF03233 Cauli_AT: Aphid trans 79.0 8.7 0.00019 31.3 6.6 36 26-61 119-157 (163)
369 PHA03161 hypothetical protein; 79.0 10 0.00022 30.6 6.8 43 7-49 57-106 (150)
370 PF05929 Phage_GPO: Phage caps 78.9 10 0.00022 33.0 7.3 15 42-56 238-252 (276)
371 PF05957 DUF883: Bacterial pro 78.8 18 0.0004 25.5 7.6 17 3-19 4-20 (94)
372 PF14817 HAUS5: HAUS augmin-li 78.8 8 0.00017 37.2 7.3 42 15-56 83-124 (632)
373 TIGR03017 EpsF chain length de 78.7 18 0.00038 31.6 8.9 61 2-62 259-334 (444)
374 COG5493 Uncharacterized conser 78.5 12 0.00026 32.0 7.4 25 3-27 45-69 (231)
375 PF02646 RmuC: RmuC family; I 78.4 14 0.0003 31.7 8.1 53 4-56 6-65 (304)
376 PF00435 Spectrin: Spectrin re 78.4 16 0.00035 23.9 8.7 27 5-31 35-61 (105)
377 smart00806 AIP3 Actin interact 78.2 13 0.00027 34.5 8.1 25 4-28 217-241 (426)
378 PF11853 DUF3373: Protein of u 78.2 2 4.3E-05 40.2 3.0 38 21-59 21-58 (489)
379 KOG0652|consensus 78.1 6.9 0.00015 35.4 6.2 30 12-41 28-57 (424)
380 KOG3251|consensus 78.0 13 0.00028 31.5 7.5 43 7-51 36-88 (213)
381 PRK14161 heat shock protein Gr 78.0 7.9 0.00017 31.5 6.1 42 16-57 17-58 (178)
382 PHA01750 hypothetical protein 78.0 11 0.00023 27.1 6.0 31 17-47 41-71 (75)
383 KOG4687|consensus 77.9 8.7 0.00019 34.5 6.7 49 7-55 86-134 (389)
384 cd00584 Prefoldin_alpha Prefol 77.8 13 0.00028 27.5 6.7 15 21-35 97-111 (129)
385 PTZ00454 26S protease regulato 77.7 10 0.00023 33.9 7.3 40 8-47 19-58 (398)
386 PF15450 DUF4631: Domain of un 77.6 12 0.00027 35.5 7.9 17 29-45 423-439 (531)
387 PF06216 RTBV_P46: Rice tungro 77.6 8.9 0.00019 34.2 6.7 55 13-67 59-113 (389)
388 PRK00846 hypothetical protein; 77.6 21 0.00045 25.7 7.5 51 2-52 11-61 (77)
389 COG2919 Septum formation initi 77.5 11 0.00024 28.2 6.4 36 19-54 51-86 (117)
390 COG3937 Uncharacterized conser 77.4 4.4 9.6E-05 31.1 4.2 39 23-61 66-105 (108)
391 PF13514 AAA_27: AAA domain 77.2 11 0.00023 37.6 7.8 33 5-37 897-929 (1111)
392 PF10392 COG5: Golgi transport 77.0 28 0.00061 26.2 8.5 27 29-55 69-95 (132)
393 PF00831 Ribosomal_L29: Riboso 76.7 17 0.00036 24.2 6.4 19 13-31 9-27 (58)
394 COG5613 Uncharacterized conser 76.7 20 0.00044 32.9 8.8 57 2-58 328-384 (400)
395 KOG0018|consensus 76.7 9.9 0.00021 38.9 7.5 21 40-60 726-746 (1141)
396 PF05929 Phage_GPO: Phage caps 76.7 25 0.00055 30.6 9.1 58 7-64 195-253 (276)
397 TIGR02971 heterocyst_DevB ABC 76.6 23 0.0005 29.6 8.7 20 5-24 136-155 (327)
398 PF12777 MT: Microtubule-bindi 76.5 15 0.00032 32.0 7.7 10 8-17 19-28 (344)
399 COG3937 Uncharacterized conser 76.4 9.5 0.00021 29.3 5.7 24 31-54 82-105 (108)
400 PRK10698 phage shock protein P 76.3 29 0.00063 28.7 9.1 45 4-48 99-143 (222)
401 PF06419 COG6: Conserved oligo 76.3 20 0.00043 33.8 9.0 52 2-53 43-94 (618)
402 PF02181 FH2: Formin Homology 76.2 13 0.00028 31.9 7.2 17 4-20 281-297 (370)
403 TIGR02132 phaR_Bmeg polyhydrox 76.2 11 0.00025 31.3 6.6 10 32-41 114-123 (189)
404 cd00584 Prefoldin_alpha Prefol 76.0 15 0.00033 27.0 6.7 33 7-39 90-122 (129)
405 PF04420 CHD5: CHD5-like prote 75.9 12 0.00025 29.5 6.4 20 9-28 38-57 (161)
406 PF10392 COG5: Golgi transport 75.8 24 0.00052 26.6 7.9 31 32-62 65-95 (132)
407 TIGR01730 RND_mfp RND family e 75.8 19 0.00042 29.2 7.8 55 3-57 70-134 (322)
408 PF14257 DUF4349: Domain of un 75.7 22 0.00048 29.3 8.3 51 6-56 134-193 (262)
409 PF00429 TLV_coat: ENV polypro 75.7 9.3 0.0002 35.9 6.7 26 2-27 433-458 (561)
410 PF03954 Lectin_N: Hepatic lec 75.5 9.4 0.0002 30.4 5.7 47 15-61 59-109 (138)
411 PHA03041 virion core protein; 75.3 15 0.00033 29.7 6.9 32 7-38 96-127 (153)
412 COG3750 Uncharacterized protei 75.3 18 0.0004 26.6 6.8 48 4-51 21-68 (85)
413 TIGR00999 8a0102 Membrane Fusi 75.2 28 0.00061 27.7 8.5 58 5-62 17-84 (265)
414 PF08776 VASP_tetra: VASP tetr 75.1 16 0.00035 23.6 5.6 36 4-39 3-40 (40)
415 PF10234 Cluap1: Clusterin-ass 75.0 20 0.00043 31.1 8.0 34 21-54 172-205 (267)
416 PF12296 HsbA: Hydrophobic sur 74.9 13 0.00028 26.8 6.0 24 5-28 2-25 (124)
417 KOG1924|consensus 74.9 66 0.0014 32.8 12.3 10 51-60 507-516 (1102)
418 PF00015 MCPsignal: Methyl-acc 74.9 24 0.00053 26.8 7.8 59 2-60 98-156 (213)
419 PF07851 TMPIT: TMPIT-like pro 74.8 25 0.00055 31.4 8.8 15 3-17 10-24 (330)
420 PRK03992 proteasome-activating 74.5 14 0.0003 32.6 7.1 47 6-52 3-49 (389)
421 PF12777 MT: Microtubule-bindi 74.5 28 0.00062 30.2 9.0 16 4-19 22-37 (344)
422 PF06818 Fez1: Fez1; InterPro 74.4 22 0.00048 29.8 7.9 64 2-65 15-106 (202)
423 smart00498 FH2 Formin Homology 74.3 15 0.00033 32.8 7.4 21 38-58 323-343 (432)
424 PF15070 GOLGA2L5: Putative go 74.2 24 0.00053 33.8 9.1 49 15-63 19-67 (617)
425 PRK00306 50S ribosomal protein 74.2 15 0.00032 25.0 5.8 19 6-24 11-29 (66)
426 PF14282 FlxA: FlxA-like prote 74.1 22 0.00048 26.2 7.2 51 10-60 18-72 (106)
427 PRK13923 putative spore coat p 74.0 21 0.00046 29.2 7.6 41 9-49 109-149 (170)
428 PRK11546 zraP zinc resistance 74.0 39 0.00085 26.9 8.9 56 4-59 47-109 (143)
429 PF15079 DUF4546: Domain of un 74.0 17 0.00037 30.4 7.0 12 3-14 53-64 (205)
430 PF04645 DUF603: Protein of un 73.9 19 0.00041 29.9 7.2 22 6-27 107-128 (181)
431 PF07246 Phlebovirus_NSM: Phle 73.9 10 0.00022 33.0 6.0 21 33-53 217-237 (264)
432 PF04420 CHD5: CHD5-like prote 73.7 16 0.00034 28.8 6.6 45 15-59 37-93 (161)
433 PF10174 Cast: RIM-binding pro 73.7 20 0.00044 35.3 8.6 29 30-58 320-348 (775)
434 PF06818 Fez1: Fez1; InterPro 73.6 26 0.00057 29.4 8.2 33 26-58 74-106 (202)
435 KOG0994|consensus 73.6 11 0.00023 39.6 6.9 61 3-63 1200-1263(1758)
436 PRK10476 multidrug resistance 73.5 32 0.0007 29.2 8.9 20 41-60 161-180 (346)
437 PRK14148 heat shock protein Gr 73.4 22 0.00049 29.3 7.7 36 4-39 40-75 (195)
438 COG4467 Regulator of replicati 73.3 21 0.00046 27.7 6.9 51 7-57 4-54 (114)
439 KOG0964|consensus 73.3 19 0.00042 36.9 8.4 47 6-52 687-733 (1200)
440 PF09969 DUF2203: Uncharacteri 73.2 21 0.00046 27.2 7.0 61 7-67 9-71 (120)
441 PF13094 CENP-Q: CENP-Q, a CEN 73.1 33 0.00072 26.4 8.2 43 19-61 42-84 (160)
442 KOG4196|consensus 73.1 14 0.00031 29.4 6.1 38 7-44 77-114 (135)
443 TIGR02231 conserved hypothetic 73.0 23 0.00049 32.2 8.3 61 2-62 76-161 (525)
444 TIGR03017 EpsF chain length de 73.0 29 0.00063 30.2 8.7 56 5-60 283-339 (444)
445 PF12709 Kinetocho_Slk19: Cent 72.9 21 0.00047 26.3 6.7 42 10-51 33-82 (87)
446 PF04048 Sec8_exocyst: Sec8 ex 72.9 21 0.00046 27.3 7.0 54 7-60 75-128 (142)
447 TIGR02680 conserved hypothetic 72.8 21 0.00045 36.8 8.7 58 4-61 269-326 (1353)
448 COG4980 GvpP Gas vesicle prote 72.6 29 0.00063 26.8 7.6 53 7-62 35-88 (115)
449 PHA03395 p10 fibrous body prot 72.4 35 0.00077 25.3 7.7 60 1-60 1-63 (87)
450 PF04880 NUDE_C: NUDE protein, 72.4 6.6 0.00014 31.9 4.3 51 2-57 5-55 (166)
451 KOG0921|consensus 72.3 11 0.00025 38.5 6.6 66 63-129 1192-1257(1282)
452 PF14257 DUF4349: Domain of un 72.2 25 0.00054 29.0 7.8 55 2-56 137-193 (262)
453 PF04888 SseC: Secretion syste 72.2 38 0.00082 28.5 9.0 57 2-58 235-291 (306)
454 PF14362 DUF4407: Domain of un 72.1 46 0.001 28.0 9.4 70 2-71 110-181 (301)
455 cd07666 BAR_SNX7 The Bin/Amphi 72.1 20 0.00044 30.5 7.3 51 8-61 160-210 (243)
456 PF06717 DUF1202: Protein of u 72.1 10 0.00022 33.7 5.7 38 6-43 140-177 (308)
457 PF09602 PhaP_Bmeg: Polyhydrox 72.1 41 0.0009 27.5 8.8 57 2-58 46-104 (165)
458 PF08776 VASP_tetra: VASP tetr 72.0 9 0.0002 24.7 4.0 24 18-41 3-27 (40)
459 PRK03947 prefoldin subunit alp 72.0 24 0.00053 26.4 7.1 45 2-46 92-136 (140)
460 PRK13694 hypothetical protein; 72.0 17 0.00036 26.8 5.9 58 3-60 11-68 (83)
461 PF04350 PilO: Pilus assembly 71.9 6.6 0.00014 28.8 3.9 41 13-53 1-44 (144)
462 PF12296 HsbA: Hydrophobic sur 71.9 18 0.00038 26.1 6.1 53 12-64 2-57 (124)
463 cd00176 SPEC Spectrin repeats, 71.9 33 0.00072 25.2 7.7 59 4-62 33-95 (213)
464 KOG0979|consensus 71.9 24 0.00053 36.1 8.8 65 2-66 861-926 (1072)
465 PRK09343 prefoldin subunit bet 71.9 20 0.00042 27.1 6.5 48 1-51 64-111 (121)
466 PF14197 Cep57_CLD_2: Centroso 71.8 31 0.00067 24.0 8.8 59 2-60 10-68 (69)
467 KOG1853|consensus 71.8 29 0.00063 30.9 8.3 60 1-60 49-119 (333)
468 TIGR01069 mutS2 MutS2 family p 71.8 24 0.00053 34.3 8.6 60 3-62 503-562 (771)
469 PRK11546 zraP zinc resistance 71.7 49 0.0011 26.3 9.5 66 6-71 56-135 (143)
470 PRK13923 putative spore coat p 71.6 24 0.00052 28.9 7.4 48 11-60 106-153 (170)
471 PLN03229 acetyl-coenzyme A car 71.6 29 0.00062 34.4 9.0 74 2-76 484-600 (762)
472 PF11262 Tho2: Transcription f 71.5 20 0.00043 30.8 7.2 59 3-61 30-89 (298)
473 KOG0972|consensus 71.5 23 0.00049 32.1 7.7 61 2-62 278-351 (384)
474 PF04645 DUF603: Protein of un 71.5 18 0.00038 30.1 6.6 48 12-59 106-158 (181)
475 cd07666 BAR_SNX7 The Bin/Amphi 71.3 27 0.00059 29.7 7.9 53 2-57 161-213 (243)
476 COG5185 HEC1 Protein involved 71.3 17 0.00036 34.8 7.1 64 2-65 293-356 (622)
477 TIGR01005 eps_transp_fam exopo 71.3 22 0.00048 33.6 8.0 59 2-60 321-380 (754)
478 PTZ00454 26S protease regulato 71.2 20 0.00044 32.0 7.5 49 12-60 16-64 (398)
479 PF15070 GOLGA2L5: Putative go 71.1 18 0.00038 34.7 7.4 51 7-57 18-68 (617)
480 PF06705 SF-assemblin: SF-asse 71.1 36 0.00077 28.1 8.4 62 1-62 67-137 (247)
481 KOG2991|consensus 71.1 24 0.00053 31.4 7.7 63 1-63 247-309 (330)
482 PF13863 DUF4200: Domain of un 71.0 37 0.00081 24.7 9.1 58 2-59 23-108 (126)
483 TIGR01834 PHA_synth_III_E poly 71.0 29 0.00063 30.9 8.3 58 6-63 258-320 (320)
484 COG1422 Predicted membrane pro 71.0 24 0.00053 29.7 7.4 48 10-58 71-120 (201)
485 PF14817 HAUS5: HAUS augmin-li 70.8 26 0.00055 33.8 8.4 54 7-60 82-135 (632)
486 TIGR01242 26Sp45 26S proteasom 70.8 12 0.00025 32.3 5.7 40 6-45 1-40 (364)
487 PRK14154 heat shock protein Gr 70.8 22 0.00047 29.8 7.1 45 6-50 54-98 (208)
488 PF10552 ORF6C: ORF6C domain; 70.7 12 0.00025 27.8 5.0 47 11-57 1-47 (116)
489 PF11172 DUF2959: Protein of u 70.7 11 0.00024 31.6 5.3 43 6-50 146-188 (201)
490 PF07544 Med9: RNA polymerase 70.6 31 0.00067 24.4 7.0 58 5-62 22-82 (83)
491 PF02646 RmuC: RmuC family; I 70.5 30 0.00065 29.7 8.1 54 7-60 2-62 (304)
492 TIGR03042 PS_II_psbQ_bact phot 70.5 32 0.0007 27.3 7.7 55 4-58 43-111 (142)
493 PF08581 Tup_N: Tup N-terminal 70.4 37 0.0008 24.3 9.4 59 2-60 2-60 (79)
494 KOG0994|consensus 70.4 21 0.00046 37.5 8.1 58 3-60 1224-1295(1758)
495 KOG0627|consensus 70.4 12 0.00025 31.7 5.5 61 4-64 120-180 (304)
496 TIGR02680 conserved hypothetic 70.3 24 0.00051 36.4 8.5 60 3-62 275-342 (1353)
497 PRK14549 50S ribosomal protein 70.2 28 0.00061 24.1 6.5 49 13-61 14-67 (69)
498 TIGR02449 conserved hypothetic 70.0 33 0.00072 24.0 6.8 51 12-62 1-51 (65)
499 KOG4657|consensus 70.0 33 0.0007 29.7 8.1 62 2-63 63-124 (246)
500 KOG0652|consensus 69.9 13 0.00029 33.6 6.0 51 12-62 14-64 (424)
No 1
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=97.59 E-value=3.3e-05 Score=67.93 Aligned_cols=23 Identities=13% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDM 27 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV 27 (150)
+|+.|+.+|..|+..|..|+++|
T Consensus 78 ~L~sLsstV~~lq~Sl~~lsssV 100 (326)
T PF04582_consen 78 ELNSLSSTVTSLQSSLSSLSSSV 100 (326)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Confidence 33333333333333333333333
No 2
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=97.56 E-value=0.00072 Score=46.18 Aligned_cols=40 Identities=10% Similarity=0.387 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
+|..|.+||.+|++.|..|..||..|+.||...|++-.--
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555544433
No 3
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=97.42 E-value=0.001 Score=49.34 Aligned_cols=57 Identities=7% Similarity=0.383 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASI--KVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~L--K~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
++|++.|.++++.+..-+..|.+.|..| ++||..|+-.|++|+.++..|...+..+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6788888888777788888888888887 77888888888888877777777776553
No 4
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=97.38 E-value=0.00088 Score=45.75 Aligned_cols=35 Identities=14% Similarity=0.446 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 20 MVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 20 v~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
|..|.+||.+|+..|..|..||..|+.||...|++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444
No 5
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=97.33 E-value=0.00025 Score=62.53 Aligned_cols=56 Identities=9% Similarity=0.350 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
|..|..+|+.|.+++....+.|+.|+..|+.|+.||+.||.||+.+.-.|+.|++.
T Consensus 93 l~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~R 148 (326)
T PF04582_consen 93 LSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESR 148 (326)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHH
Confidence 33333333333333333333333444444444444444444444444444444433
No 6
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=97.31 E-value=0.0019 Score=50.04 Aligned_cols=56 Identities=16% Similarity=0.397 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
+-|..|-..+.+.++=...+++||.+++.|++.++.||..+.+-|..|...|.++.
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555566666666666777777777777777777777777777766666654
No 7
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=97.01 E-value=0.0049 Score=48.88 Aligned_cols=19 Identities=5% Similarity=0.408 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 26 DMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 26 DV~~LK~DV~~LK~DV~~L 44 (150)
+++.|+.+.+.|+.|+..|
T Consensus 74 ~~~~lr~~~e~L~~eie~l 92 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKL 92 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 8
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=96.95 E-value=0.0063 Score=48.23 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhhc
Q psy9603 46 DDMGSIKEDMASIKEDI 62 (150)
Q Consensus 46 ~DV~~LK~Dvs~lK~Di 62 (150)
++++.||.+|.++|.|+
T Consensus 138 ~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 138 TEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566666666554
No 9
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.95 E-value=0.0079 Score=46.01 Aligned_cols=58 Identities=17% Similarity=0.425 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.|+..++.++..|++.+..++..++.++.+...|+..+..+...+...|++++.+|..
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555555543
No 10
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=96.91 E-value=0.006 Score=47.31 Aligned_cols=54 Identities=20% Similarity=0.408 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
|...|..|-.-+.+.++=...+|+||.++++|++.++.||..+..-|..|...|
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555567777777777777777777777777777776655
No 11
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=96.91 E-value=0.0061 Score=47.53 Aligned_cols=57 Identities=14% Similarity=0.533 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDM--GSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV--~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
+|..|++++.+|+.++..|++.++.|..-. ..|+..|.+|++++..|.+.+..+++.
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444444444444333 345666777777777777777777663
No 12
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.88 E-value=0.0073 Score=51.95 Aligned_cols=56 Identities=14% Similarity=0.453 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.+|+.++++++.++.+|..+|.++.+|+..+..++.+|.++++....++..|++++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666555555555555544
No 13
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.81 E-value=0.0087 Score=51.59 Aligned_cols=40 Identities=10% Similarity=0.456 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
.|..+|.++..-+.+++.+|.+++++|..|+.+|.+|+++
T Consensus 56 ~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 56 SLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 14
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.0071 Score=52.14 Aligned_cols=54 Identities=11% Similarity=0.409 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+...|+.+|..|-..|..+-.-+.+++.+|+.+++++..|+.+|..++++|.+-
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555555443
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.79 E-value=0.02 Score=40.44 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 1 MIKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 1 ~ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
|+-+-++.|...|..+-+-|+.|+..|.+||...+.|++...+|++....||.+-+..++.|
T Consensus 1 M~~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788889999999999999999999999888888888888888888888877766554
No 16
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.77 E-value=0.0069 Score=55.46 Aligned_cols=43 Identities=19% Similarity=0.479 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
|..++.++...|.++..+++|+..|+..|..|+.++...|.++
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el 325 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEEL 325 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 17
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=96.72 E-value=0.013 Score=42.46 Aligned_cols=58 Identities=10% Similarity=0.464 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKV---DMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~---DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
....++.++.+|+...+.+...|..+|. |+..|++.+.+||+.+..+...+..+.+.+
T Consensus 37 ~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 37 ERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777776665 677777777777777777777666665543
No 18
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=96.69 E-value=0.011 Score=46.74 Aligned_cols=16 Identities=13% Similarity=0.298 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9603 33 DMGSIKEDMGSIKDDM 48 (150)
Q Consensus 33 DV~~LK~DV~~LK~DV 48 (150)
|+..||+.+.+|+++.
T Consensus 52 d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 52 DNEELKKQIEELQAKN 67 (155)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 19
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.69 E-value=0.0095 Score=54.53 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
+.+|+..+.+|..+++|+..|+..|..|+.++...|.++..|++.
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~ 331 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKER 331 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444433
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.67 E-value=0.013 Score=48.29 Aligned_cols=59 Identities=7% Similarity=0.205 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMA-----------SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~-----------~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
+.++..++++++++.++..+.++++. +|+++-..|++.+.++++.+..|+..+..+|.+
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444333333332 255555555555555555555555555555544
No 21
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=96.64 E-value=0.014 Score=40.26 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
..|+++|.++++++..+.+++..|++.-+.+.+++.++-.++..|++...
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666655555443
No 22
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=96.61 E-value=0.015 Score=43.13 Aligned_cols=51 Identities=4% Similarity=0.385 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSI--KEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~L--K~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
.+++..+...|..|.++|..| +.||..|+-.|+.|+.|+.+|..-+..|..
T Consensus 41 ~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 41 EERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555555666666666666 666666666666666666666655555543
No 23
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=96.61 E-value=0.017 Score=45.54 Aligned_cols=52 Identities=15% Similarity=0.320 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKE---DMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~---DV~~LK~DV~~LK~Dvs 56 (150)
||...|.++..+++++..+|+++.+....|..||. |+.+|++.+..|+++..
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444 44444444444444443
No 24
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.56 E-value=0.025 Score=43.23 Aligned_cols=51 Identities=16% Similarity=0.428 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
+++.|+++++.++..+..++++...|+..+..+.......|+|+.-+|..+
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443333333
No 25
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=96.56 E-value=0.011 Score=46.17 Aligned_cols=62 Identities=11% Similarity=0.518 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhcCCC
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDM--GSIKDDMGSIKEDMASIKEDIGGY 65 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV--~~LK~DV~~LK~Dvs~lK~DigGy 65 (150)
+++..|..++.+|++++.+|+.++..|+...+.|..-. .+|.+.|..|++++..+.+.+.-+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777788888888888888888888888887776 577888888888888888776544
No 26
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=96.44 E-value=0.021 Score=43.89 Aligned_cols=55 Identities=15% Similarity=0.447 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 5 DMGSIKEDMASIKEDMV--SIKEDMA--SIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~--~LK~DV~--~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
-+..|..+|.+|++|+. +=|+|.+ .+-.=+.+|-+.|..|.+++..||+||+++|
T Consensus 9 q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemK 67 (112)
T PF07439_consen 9 QLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMK 67 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhcc
Confidence 34555555555555553 2222222 1223334444444555555555555555444
No 27
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.36 E-value=0.025 Score=48.66 Aligned_cols=50 Identities=10% Similarity=0.408 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
|++|..++.+|+.++.++.+++..+..++.+|+.+++..+++++.+..++
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555554444444444443
No 28
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=96.33 E-value=0.049 Score=38.40 Aligned_cols=53 Identities=11% Similarity=0.329 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
.-|+++..-+..+++++..++.++..+-..++.+.+||....+.+..+=+.++
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~ 78 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVA 78 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444455555555555555555555555555555555444444444433333
No 29
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=96.30 E-value=0.026 Score=40.81 Aligned_cols=58 Identities=10% Similarity=0.437 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKE---DMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~---DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
...++.|+.+...+...|..++. |+.+|+..+..||+.+.+|.+.+..+.+.+..+=.
T Consensus 42 ~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 42 QQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777765 67777777777777777777777777777766543
No 30
>PRK15396 murein lipoprotein; Provisional
Probab=96.28 E-value=0.029 Score=40.42 Aligned_cols=33 Identities=12% Similarity=0.406 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
|..|.+||..|++.|.+|++|+..++.|+..-|
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~ 59 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAK 59 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334343333333333333333
No 31
>PRK15396 murein lipoprotein; Provisional
Probab=96.22 E-value=0.02 Score=41.23 Aligned_cols=37 Identities=14% Similarity=0.451 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 19 DMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 19 Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
+|..|.+||..|+..|..|+.|+..++.|+...|++-
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA 62 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDA 62 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555443
No 32
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=96.20 E-value=0.063 Score=37.83 Aligned_cols=54 Identities=11% Similarity=0.327 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
..++.-++++..-+..+.+++..++.+++.+-+.+.++.+||....+.++.+=+
T Consensus 22 ~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~ 75 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFE 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344455555555555555555555555555555555555555555555544433
No 33
>PF10349 WWbp: WW-domain ligand protein; InterPro: IPR018826 This entry represents a sequence domain found in WW domain-binding protein that is characterised by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis []. This domain lies just downstream of IPR004182 from INTERPRO in many sequences.
Probab=96.17 E-value=0.067 Score=40.39 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9603 99 GYGVDKRGYGVDKRGYGVDKRGYGVDKRGYGVNKRGYR 136 (150)
Q Consensus 99 gYg~p~~gYg~p~~gYg~p~~gyg~~~~gyg~~~~gY~ 136 (150)
+|+.++..+..++..|..++..+.++...+..++.+|+
T Consensus 75 ~y~~pp~~~~~~~~~~~~~p~~~~~~~~~~~~pPP~Y~ 112 (116)
T PF10349_consen 75 AYGPPPPGYPPPPAAYPPPPPPNSVPMPGPQEPPPPYP 112 (116)
T ss_pred ccCCCCCCCCCCCCcCCCCCCCcCcCCCCCCCCccCCC
Confidence 33433333444444444444444444444444444444
No 34
>PHA02607 wac fibritin; Provisional
Probab=96.04 E-value=0.033 Score=51.23 Aligned_cols=68 Identities=19% Similarity=0.446 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccC
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKED------------MASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVDK 69 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~D------------V~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~~ 69 (150)
+.+....+++.|.++-++|+.+++- |...+.||..||++++++++.++.+-.++.++..||+-|.+..
T Consensus 57 ld~n~~~~~~kine~vd~vn~I~~~L~~~gD~~~i~qv~~n~~dI~~lk~~~~~~~~~l~~~~~~~~~~~~~iG~~~p~~ 136 (454)
T PHA02607 57 LDENTKKTKDKINEVVDDVNTIQENLDVIGDISVIDQINQNVADIEVLKKDVSDTTDKLAGTTNEVDEIEADIGVFNPEA 136 (454)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcCCcCccc
Confidence 3456667777777777777777753 3467899999999999999999999999999999999888653
No 35
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.03 E-value=0.047 Score=47.57 Aligned_cols=54 Identities=6% Similarity=0.311 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
++.++++++.+..++...+.++.+++..+..++.+|.+.++....+.+.++++.
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444433
No 36
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=95.98 E-value=0.053 Score=37.39 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
|+++|..++.++..+.+++..++..-+.+.+++..+-+++++|++...=+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~ 53 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWI 53 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777777777777665433
No 37
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=95.94 E-value=0.042 Score=51.31 Aligned_cols=45 Identities=29% Similarity=0.479 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKE-------DMVSIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~-------Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
|++++++|+.|++|++ |+...|+++.+||.++...|+-+..+|+|
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555553 34455555555555554444444444333
No 38
>KOG2391|consensus
Probab=95.88 E-value=0.053 Score=48.69 Aligned_cols=63 Identities=11% Similarity=0.227 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGG 64 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigG 64 (150)
+++.|+.+..++++||.-=.+|+++..+|+..+++|+..+..|++++.+||+.+.+.-+|...
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 466778888888888888888888888888888888888888888888888888886666544
No 39
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.87 E-value=0.091 Score=41.24 Aligned_cols=64 Identities=14% Similarity=0.395 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccC
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVDK 69 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~~ 69 (150)
|..+++.+..+.++...++.++...+..+..+++++..+|.+-..++.....++..-+-|..|.
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ 142 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPA 142 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH
Confidence 4567777888888888888888888888888888888888888888888888888888877764
No 40
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.83 E-value=0.057 Score=47.02 Aligned_cols=28 Identities=7% Similarity=0.278 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 24 KEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 24 K~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
|+.+++++.++...+.++.++++.+..+
T Consensus 210 k~~l~~~~~ei~~~~~~l~e~~~~l~~l 237 (312)
T smart00787 210 KEKLKKLLQEIMIKVKKLEELEEELQEL 237 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 41
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=95.77 E-value=0.085 Score=35.98 Aligned_cols=36 Identities=14% Similarity=0.422 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDM 41 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV 41 (150)
|++|.++|..|+..|+.+|....+|+.+|..|++.|
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665555555555
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.77 E-value=0.078 Score=43.80 Aligned_cols=58 Identities=5% Similarity=0.235 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIK----VDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK----~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
++-+..++.++++|++.++++.++..+.+ +.++..+.-+++|+++-..|++.++.+++
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777766654433 33333333334444444444444444433
No 43
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.76 E-value=0.42 Score=44.41 Aligned_cols=57 Identities=9% Similarity=0.267 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
-+.+.++..++|+..+..||+++..|+.....+.+.+.+|.+++..||+.+..+++.
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 355566677788888888888888777888888888888888888888888665554
No 44
>PF10349 WWbp: WW-domain ligand protein; InterPro: IPR018826 This entry represents a sequence domain found in WW domain-binding protein that is characterised by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis []. This domain lies just downstream of IPR004182 from INTERPRO in many sequences.
Probab=95.64 E-value=0.15 Score=38.55 Aligned_cols=47 Identities=21% Similarity=0.243 Sum_probs=28.8
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy9603 85 GYGVDK-SGYGVDKSGYGVDKRGYGVDKRGYGVDKRGYGVDKRGYGVN 131 (150)
Q Consensus 85 GYg~~~-~gYg~p~~gYg~p~~gYg~p~~gYg~p~~gyg~~~~gyg~~ 131 (150)
.|++|+ .+|+.++..+..++..|..++..+.++...+..+|.+|..+
T Consensus 67 ~y~~Pp~~~y~~pp~~~~~~~~~~~~~p~~~~~~~~~~~~pPP~Y~~~ 114 (116)
T PF10349_consen 67 PYGAPPPPAYGPPPPGYPPPPAAYPPPPPPNSVPMPGPQEPPPPYPEP 114 (116)
T ss_pred CCCCCCCcccCCCCCCCCCCCCcCCCCCCCcCcCCCCCCCCccCCCCC
Confidence 344454 56666655566666666666666666666666666666554
No 45
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=95.63 E-value=0.1 Score=41.87 Aligned_cols=60 Identities=12% Similarity=0.411 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhcC
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMAS----IKVDMGSIKEDMGSIK-------DDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~----LK~DV~~LK~DV~~LK-------~DV~~LK~Dvs~lK~Dig 63 (150)
+-|+.|+.++...++.+..+-+++.. |..|...||+|+.++. .++..|+.++..+++.|.
T Consensus 110 ~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 110 EIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 34444455555555444444444433 2345555555555443 455666777776666553
No 46
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=95.53 E-value=0.061 Score=36.68 Aligned_cols=37 Identities=14% Similarity=0.403 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMG 49 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~ 49 (150)
|.+|.++|..+++-|+.+|.....|+++|..|++.|.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777776663
No 47
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.50 E-value=0.25 Score=34.89 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
.-|..+-+.|+.|+.++..||+...+|+.....|+.....||++-...++-+..|
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777777777777777777777777776666654
No 48
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.42 E-value=0.13 Score=42.11 Aligned_cols=55 Identities=16% Similarity=0.307 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.|++||++|+++|..-...+..|.++..+...|++-+..+.+++..|+.++....
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666555555555555555555555555444433
No 49
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.41 E-value=0.054 Score=35.13 Aligned_cols=37 Identities=22% Similarity=0.440 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 17 KEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 17 K~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
..|-..||++-..||.|-..|+.+...|+..|..|+.
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443
No 50
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.37 E-value=0.065 Score=47.73 Aligned_cols=50 Identities=12% Similarity=0.336 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 14 ASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 14 ~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
..|++++..|++++..|+.++..+-+.++.++.++..++.++..++.++.
T Consensus 230 ~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 230 KTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333222233344444444444444444433
No 51
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=95.32 E-value=0.1 Score=41.75 Aligned_cols=54 Identities=13% Similarity=0.392 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.|.+.+++-|..|+..|...++.|..+-.++..+|.+ |.+|.+.|++++..+.+
T Consensus 103 ~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~---l~~D~~~l~~~~~~l~~ 156 (184)
T PF05791_consen 103 KDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDK---LQKDSRNLKTDVDELQS 156 (184)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHH
Confidence 4566677777777777777777777777777666542 33445555555544443
No 52
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=95.29 E-value=0.068 Score=49.91 Aligned_cols=8 Identities=13% Similarity=0.513 Sum_probs=3.3
Q ss_pred HHHHhhhh
Q psy9603 54 DMASIKED 61 (150)
Q Consensus 54 Dvs~lK~D 61 (150)
|++.|++.
T Consensus 263 D~~~L~~~ 270 (555)
T TIGR03545 263 DLKRLENK 270 (555)
T ss_pred HHHHHHHH
Confidence 44444433
No 53
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.27 E-value=0.13 Score=42.69 Aligned_cols=64 Identities=6% Similarity=0.276 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGV 67 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~ 67 (150)
..+..|..|+..|+.-++...++...+..++..+......|.++|..|..+|.++-+++..|+.
T Consensus 52 ~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 52 KELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4466666666666666777777777788888888888888888999999999999999888886
No 54
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=95.12 E-value=0.071 Score=39.17 Aligned_cols=33 Identities=9% Similarity=0.372 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 20 MVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 20 v~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
|.+|.+||+.|+.+|..|..||..+|.++..-|
T Consensus 26 vdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk 58 (85)
T PRK09973 26 VNQLASNVQTLNAKIARLEQDMKALRPQIYAAK 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 55
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.09 E-value=0.085 Score=47.01 Aligned_cols=14 Identities=7% Similarity=0.503 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHh
Q psy9603 45 KDDMGSIKEDMASI 58 (150)
Q Consensus 45 K~DV~~LK~Dvs~l 58 (150)
+.++..|++++..+
T Consensus 233 ~~~l~~l~~~i~~l 246 (562)
T PHA02562 233 KAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 56
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=95.09 E-value=0.099 Score=38.40 Aligned_cols=37 Identities=11% Similarity=0.354 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
+|..|.+||..|+++|..+.+||..+|.++..-|++-
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA 61 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEA 61 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666666666666666655555544
No 57
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.08 E-value=0.21 Score=41.97 Aligned_cols=53 Identities=9% Similarity=0.357 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
-++|..|.+||+.|-.-|.+.+++-...++.+..+-+++.-||+.|.++..+.
T Consensus 52 ~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 52 VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666667666677777777777777773
No 58
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=95.06 E-value=0.14 Score=36.39 Aligned_cols=13 Identities=8% Similarity=0.432 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhhh
Q psy9603 49 GSIKEDMASIKED 61 (150)
Q Consensus 49 ~~LK~Dvs~lK~D 61 (150)
..+|.++..|+..
T Consensus 60 ~~i~~~lk~l~~~ 72 (117)
T smart00503 60 KEIRAKLKELEKE 72 (117)
T ss_pred HHHHHHHHHHHHh
Confidence 3444455544443
No 59
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=95.05 E-value=0.13 Score=36.96 Aligned_cols=55 Identities=7% Similarity=0.407 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
|++||+.+.++|..|.+.|..|++.+ .||++|.+-+..+-+-+..|..-|+++-+
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~----~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNL----PDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777776665544 45666666666666666666666665544
No 60
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=94.94 E-value=0.13 Score=41.53 Aligned_cols=57 Identities=12% Similarity=0.317 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhc
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKED--------MGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~D--------V~~LK~DV~~LK~Dvs~lK~Di 62 (150)
+..++++|..|++.|..|++-+..+-+|++.+++. |.+|++.|..||.-++..+.|+
T Consensus 74 ~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~ 138 (157)
T COG3352 74 LQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDL 138 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444444444444444444444444444433332 4445555555555555555554
No 61
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=94.87 E-value=0.18 Score=34.39 Aligned_cols=50 Identities=14% Similarity=0.351 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK-VDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK-~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
|..++.+|.+..+-|.+|.-+|..+- ++-..+++.|...|+++..||.++
T Consensus 27 i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 27 IREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444454444444442 333444445555555555554443
No 62
>KOG1962|consensus
Probab=94.87 E-value=0.14 Score=43.14 Aligned_cols=61 Identities=13% Similarity=0.388 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
++.+..+++|...|++++.+.+.|.....+|+..||.-..++..+-..|.+|-+.|.+.|-
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3556777777788888888888888888888888888888888888888888888877654
No 63
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=94.86 E-value=0.1 Score=34.99 Aligned_cols=39 Identities=15% Similarity=0.430 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
+..++..+..|++.+..++++...|++++..|+.|-..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 344555555555555555555555555555554444443
No 64
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=94.86 E-value=0.22 Score=40.73 Aligned_cols=20 Identities=15% Similarity=0.506 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy9603 40 DMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 40 DV~~LK~DV~~LK~Dvs~lK 59 (150)
+|+.||.++..|++++..++
T Consensus 160 ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 160 EISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 65
>PLN02678 seryl-tRNA synthetase
Probab=94.77 E-value=0.16 Score=46.45 Aligned_cols=64 Identities=9% Similarity=0.255 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccC
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDM----------ASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVDK 69 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV----------~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~~ 69 (150)
.+.++.++..|+.+.+.+...| ++|+..+..||+++..|.+++..+++++..+=..|+=.=.|.
T Consensus 42 ~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~ 115 (448)
T PLN02678 42 WRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDS 115 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 3445555555555555544444 445555556666666666666666666666555555544443
No 66
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=94.74 E-value=0.17 Score=33.76 Aligned_cols=33 Identities=15% Similarity=0.450 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
|..|.+.|..|.++...|+..+..|+..+..|+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444443
No 67
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.65 E-value=0.13 Score=33.32 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 25 EDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 25 ~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.|-..||.+-..||.|-..|+.+...|+..|..++
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 68
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.61 E-value=0.43 Score=36.18 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDM 27 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV 27 (150)
+..+++.++...+.+..++.|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dl 33 (132)
T PF07926_consen 12 LQRLKEQEEDAEEQLQSLREDL 33 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444
No 69
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=94.61 E-value=0.13 Score=34.52 Aligned_cols=39 Identities=15% Similarity=0.392 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~L 44 (150)
+..++.+++.|++.+..+++....|+.++..||.|-+.+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 334444444444444444444444444444443343333
No 70
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=94.58 E-value=0.33 Score=39.70 Aligned_cols=15 Identities=20% Similarity=0.601 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhhh
Q psy9603 47 DMGSIKEDMASIKED 61 (150)
Q Consensus 47 DV~~LK~Dvs~lK~D 61 (150)
++..||.+++.++++
T Consensus 160 ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 160 EISRLKSEAEALKEE 174 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 71
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.58 E-value=0.42 Score=36.70 Aligned_cols=15 Identities=20% Similarity=0.625 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhh
Q psy9603 46 DDMGSIKEDMASIKE 60 (150)
Q Consensus 46 ~DV~~LK~Dvs~lK~ 60 (150)
+.|..||.||..+|.
T Consensus 96 E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 96 EEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666777776664
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.53 E-value=0.34 Score=37.73 Aligned_cols=60 Identities=8% Similarity=0.317 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
||.+-....+.+..++..+..+..+...+-.+|..|..-+..|-.||..+.+.+..+|+.
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666667777777777777766666777777777777777776666666666654
No 73
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=94.53 E-value=0.3 Score=39.51 Aligned_cols=60 Identities=13% Similarity=0.224 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIK--------VDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK--------~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
|++.|+.|++.++.|+.-+..+.+|+.-++ ..|..|++.|.+||.-+...+.|+..++-+
T Consensus 77 ~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l~g~ 144 (157)
T COG3352 77 IKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRELYGV 144 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC
Confidence 577888888888888888888888876443 358889999999999999999999888654
No 74
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=94.49 E-value=0.27 Score=37.88 Aligned_cols=14 Identities=14% Similarity=0.537 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMAS 15 (150)
Q Consensus 2 ik~Di~~Lk~dv~~ 15 (150)
|.++|++|++|+.+
T Consensus 13 l~~~v~~lRed~r~ 26 (112)
T PF07439_consen 13 LNAEVKELREDIRR 26 (112)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666666543
No 75
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.46 E-value=0.25 Score=45.18 Aligned_cols=55 Identities=9% Similarity=0.422 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
.||+.++..|...++....|.+.+..+++||+.|...+.+...|+..++.+++.+
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 3444444444444444444444444444444444444444444444444444443
No 76
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.43 E-value=0.35 Score=36.79 Aligned_cols=54 Identities=7% Similarity=0.323 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+.|=+.|+.|.+.|..|-++|++||++|..|=+.-+.|+-+..-|++-++.+.+
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677888888888888888888888888888888888888888888887644
No 77
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.39 E-value=0.38 Score=36.22 Aligned_cols=54 Identities=7% Similarity=0.316 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+.|=+.|..|.+.+..|-++|.+||..|..|=+.-++|+-...-|++-++.+.+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667778888888888888888888888888888888888888887777655
No 78
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.36 E-value=0.4 Score=39.97 Aligned_cols=8 Identities=25% Similarity=0.767 Sum_probs=2.9
Q ss_pred HHHHHHhh
Q psy9603 52 KEDMASIK 59 (150)
Q Consensus 52 K~Dvs~lK 59 (150)
...++.++
T Consensus 268 e~el~~l~ 275 (312)
T PF00038_consen 268 EEELAELR 275 (312)
T ss_dssp HHHHHHHH
T ss_pred chhHHHHH
Confidence 33333333
No 79
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=94.32 E-value=0.48 Score=32.55 Aligned_cols=56 Identities=11% Similarity=0.388 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMAS-----------IKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~-----------LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.+..|+.-...|..++....+++.. .-.+|..|+.++.+|++-+..|+..+..+.+
T Consensus 20 s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~~ 86 (87)
T PF08700_consen 20 SIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQE 86 (87)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555555566666666665555542 3356677777777777777777777666543
No 80
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=94.32 E-value=0.33 Score=44.29 Aligned_cols=56 Identities=9% Similarity=0.285 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMAS-----IKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~-----LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
.++...|-++|..|++-|..|+.||.. .+..+..+..|++.++.++..|++=|..+
T Consensus 212 ~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 212 SEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777777777777753 33444444444444444444444444333
No 81
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.31 E-value=0.37 Score=37.65 Aligned_cols=42 Identities=12% Similarity=0.548 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
++..+++-++.+.+++..+.+.+.++..+...+|.+...+.+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~ 123 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRE 123 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444444444444444444444444444444333333333
No 82
>KOG3156|consensus
Probab=94.29 E-value=0.36 Score=40.93 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhhh
Q psy9603 46 DDMGSIKEDMASIKED 61 (150)
Q Consensus 46 ~DV~~LK~Dvs~lK~D 61 (150)
++|..||..|.++|..
T Consensus 181 ~Ev~~lk~qi~s~K~q 196 (220)
T KOG3156|consen 181 QEVTNLKTQIESVKTQ 196 (220)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555543
No 83
>KOG0250|consensus
Probab=94.25 E-value=0.18 Score=50.70 Aligned_cols=58 Identities=12% Similarity=0.477 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+++|.++++.+..++.+++..++.+.++++|+..+|..+..+|..+.....+|..+|+
T Consensus 315 r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~ 372 (1074)
T KOG0250|consen 315 RQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKK 372 (1074)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666555555544444444444443
No 84
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.17 E-value=0.47 Score=37.96 Aligned_cols=53 Identities=8% Similarity=0.370 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
|..|+.+++.|++.+..++..|.++...+..|+.++..|.--.+.+.+.+..+
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444443333
No 85
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=94.15 E-value=0.27 Score=44.11 Aligned_cols=68 Identities=12% Similarity=0.331 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCCCCC
Q psy9603 6 MGSIKEDMASIKEDMVSIK---EDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVDKRGYG 73 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK---~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~~~gYg 73 (150)
++.|+.+...+...|..++ +|..+|+..+..||+++.+|++....+++++..+=.-|+=.=-+-.--|
T Consensus 44 ~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~g 114 (425)
T PRK05431 44 LEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVG 114 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 3444444444444443322 1344566666666666666666666666666666655555544444333
No 86
>KOG4603|consensus
Probab=94.07 E-value=0.48 Score=39.48 Aligned_cols=60 Identities=12% Similarity=0.365 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVD--MGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~D--V~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
|+.+|..|.+.+.+|++....+.++|.+|..- +.+|.+.+++||..|+...+.+..+|+-
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666667776666666666655543 3456666777777777776666666653
No 87
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=93.98 E-value=0.43 Score=41.45 Aligned_cols=59 Identities=17% Similarity=0.388 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
.+|+..+.+++.+++++.....++.+++.=|..+|.-+++|+..-+.|...|..+|+.|
T Consensus 200 r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 200 RKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666666666666666666666666666666666654
No 88
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=93.95 E-value=0.34 Score=43.44 Aligned_cols=64 Identities=8% Similarity=0.242 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCC
Q psy9603 7 GSIKEDMASIKEDMVSIKED-----------MASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVDKR 70 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~D-----------V~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~~~ 70 (150)
+.++.++..|+.+.+.+... .++|+..+..||+++.+|++.+..+++++..+=..|+=.=.+-.
T Consensus 40 r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 40 KKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 34444444444444444443 44555555555556666666666666666665555555544433
No 89
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.94 E-value=0.64 Score=35.26 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
..+..|+.++..+++++....+.+..++.|+...
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q 36 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQ 36 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555433
No 90
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.92 E-value=0.56 Score=38.74 Aligned_cols=53 Identities=8% Similarity=0.319 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
++.+.++-..|.+++..|+..+..|+.-+..|+.-|+.+++.+..|++++..+
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555554444444444444444444444444444443
No 91
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.89 E-value=0.6 Score=38.95 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 22 SIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 22 ~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
.+|+++..+|..|..|..++..|+
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~ 236 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLR 236 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccc
Confidence 333333333333333333333333
No 92
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=93.85 E-value=0.31 Score=45.80 Aligned_cols=63 Identities=14% Similarity=0.399 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMG--------SIKEDMGSIKDDMGSIKEDMASIKEDIGG 64 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~--------~LK~DV~~LK~DV~~LK~Dvs~lK~DigG 64 (150)
++..++.|++.|.+|.+||..|..-...+|.|++ ....||..++++++.+=+.++-+|.+-++
T Consensus 410 ~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~ 480 (531)
T PF15450_consen 410 MEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPG 480 (531)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 3456677777777777777777666666666554 34556677777777766666666665543
No 93
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.79 E-value=0.4 Score=43.95 Aligned_cols=59 Identities=12% Similarity=0.406 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
.++.++.|++.++..|+..+.--+.|...+..++++++.|...+.....|+..++.+|.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 36677777777777777777777777778888888888877777777777777777663
No 94
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.75 E-value=0.6 Score=38.14 Aligned_cols=48 Identities=15% Similarity=0.332 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 14 ASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 14 ~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.+||++|..||.--...+..|..+..+...|++-+..+..++.+|+.+
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~ 77 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQ 77 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444444444444444433
No 95
>PLN02678 seryl-tRNA synthetase
Probab=93.74 E-value=0.36 Score=44.10 Aligned_cols=58 Identities=5% Similarity=0.239 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDM----------GSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV----------~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
|-.|-++..+++..+..|+.+...+-..| +.|++.+.+||+++..|..++..+++.+-
T Consensus 35 il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 35 VIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666554433 34445555556666666666666665554
No 96
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=93.65 E-value=1.1 Score=30.62 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhhh
Q psy9603 49 GSIKEDMASIKED 61 (150)
Q Consensus 49 ~~LK~Dvs~lK~D 61 (150)
..++..+..|+++
T Consensus 59 ~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 59 QKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555555
No 97
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=93.64 E-value=0.3 Score=42.24 Aligned_cols=55 Identities=13% Similarity=0.375 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
++-+..+++++..|.++.....++++..+.++..|++++..+++....++.++..
T Consensus 5 ~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 59 (378)
T TIGR01554 5 KEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIAD 59 (378)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555544333333444445555555555555555555555544433
No 98
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=93.62 E-value=0.39 Score=43.53 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDM 27 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV 27 (150)
|+++|.+|++....|.+++..||+++
T Consensus 217 ~~~el~eik~~~~~L~~~~e~Lk~~~ 242 (395)
T PF10267_consen 217 ILEELREIKESQSRLEESIEKLKEQY 242 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666543
No 99
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.60 E-value=0.44 Score=46.20 Aligned_cols=37 Identities=0% Similarity=0.283 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKED 40 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~D 40 (150)
..|..|+.|++.++..++..+++...|.+-...|+++
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~ 70 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKE 70 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444444333333333333
No 100
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.55 E-value=0.43 Score=48.02 Aligned_cols=64 Identities=11% Similarity=0.260 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDM---GSIKEDM---GSIKDDMGSIKEDMASIKEDIGGYGV 67 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV---~~LK~DV---~~LK~DV~~LK~Dvs~lK~DigGyg~ 67 (150)
+.+..+.+++..++.++..++..+..++.++ ..|+.|| ..+..++..++..|..++++...++.
T Consensus 751 ~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~ 820 (1311)
T TIGR00606 751 NKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL 820 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3344444444444444444444444444444 3344444 33367778888888888888877765
No 101
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=93.55 E-value=0.52 Score=39.97 Aligned_cols=55 Identities=9% Similarity=0.280 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
|..|...=..+|+-+.+|.+++..+++.|..|+.+|+.||.|-..|=+.|.-|.+
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566667788888888888888888888888888888888888888877754
No 102
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=93.54 E-value=0.5 Score=37.44 Aligned_cols=34 Identities=9% Similarity=0.357 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 25 EDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 25 ~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
++...++++|..||+++++.+.|+..||+....+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555444
No 103
>PLN02320 seryl-tRNA synthetase
Probab=93.54 E-value=0.36 Score=44.94 Aligned_cols=64 Identities=9% Similarity=0.275 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccC
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDM---------ASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVDK 69 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV---------~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~~ 69 (150)
.+.++.++..|+.+.+.+...| .+|+..+..||+++.+|++++..+++++..+=.-|+=+=-+.
T Consensus 102 ~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~ 174 (502)
T PLN02320 102 MLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPD 174 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 4455555555555555544444 455556666666666666666666666666655555554443
No 104
>KOG2391|consensus
Probab=93.49 E-value=0.4 Score=43.19 Aligned_cols=56 Identities=11% Similarity=0.290 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
..+++|.++...+++||.==.+||.+.+.|++-+.+|++.+.+|+.++..||+.+.
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVR 277 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35667777777777777777788888888888888888888888888888877653
No 105
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=93.49 E-value=0.5 Score=37.45 Aligned_cols=59 Identities=14% Similarity=0.345 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMAS-IKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~-LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
++..++++++.++....+..+.... .+++.+.+++++.+||+++...+.|+..||.-..
T Consensus 126 ~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 126 ELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333332 4567777888888888888888888888876543
No 106
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=93.49 E-value=0.44 Score=42.81 Aligned_cols=62 Identities=6% Similarity=0.367 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIK---VDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGY 65 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK---~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGy 65 (150)
++.+.++.++..|+.+.+.+...|..+| .|.+.|++.+.+||+++..|++.+..+++++--.
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777788888888877787644 2567788888888888888888888888877543
No 107
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.48 E-value=0.67 Score=39.00 Aligned_cols=46 Identities=9% Similarity=0.346 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
|.+||+.|..-|++.+++-...++.+..+-.++.-||..|.+++.+
T Consensus 58 I~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 58 INQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555444
No 108
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.47 E-value=0.49 Score=44.12 Aligned_cols=45 Identities=9% Similarity=0.401 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
++++.|.+++..++.++..++.++..+++.+..+++++..++..+
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444
No 109
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.41 E-value=0.61 Score=38.70 Aligned_cols=55 Identities=9% Similarity=0.287 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
.|++.|+..+.....+...+..+...+.+....|..+|..|...|..|-+++..+
T Consensus 59 ~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l 113 (264)
T PF06008_consen 59 QDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESL 113 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444444444444444444333
No 110
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=93.41 E-value=0.45 Score=32.76 Aligned_cols=52 Identities=6% Similarity=0.299 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 1 MIKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 1 ~ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
|+.+.|..|+..|+-...-|.+|-.=|.....+|..|+..+..|++-+..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666777777777777777777777777777766666666666666655554
No 111
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.37 E-value=0.56 Score=39.57 Aligned_cols=43 Identities=9% Similarity=0.225 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
+|.+-|..|+.||.+|+..|+++.-++.+|++.-..+-.|+..
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444
No 112
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.28 E-value=0.4 Score=44.71 Aligned_cols=35 Identities=9% Similarity=0.340 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 25 EDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 25 ~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
+.+.+++.++..++.++..+++.+..+++++..++
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 462 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEALR 462 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444443333
No 113
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.19 E-value=0.44 Score=38.14 Aligned_cols=49 Identities=4% Similarity=0.346 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
++..+.....-|..|+..++.|+..+..|++.+.++...+..|++++..
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~ 155 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA 155 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444444444333
No 114
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.08 E-value=0.42 Score=40.29 Aligned_cols=44 Identities=11% Similarity=0.275 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
+|...|..|++||..|+..|.++.-++..|++.-.+|-.|+..+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555443
No 115
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=93.05 E-value=0.36 Score=35.89 Aligned_cols=58 Identities=10% Similarity=0.219 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhcCCCCccCC
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI----KEDMASIKEDIGGYGVDKR 70 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L----K~Dvs~lK~DigGyg~~~~ 70 (150)
...+++.+..+++.+..|++....|+++|..||+|-..+ ++++.-+|.+-.-|-..++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy~~~~~ 90 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFYRIVPD 90 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEEEeCCC
Confidence 444555555555555555555555555555555543333 3344445555555544443
No 116
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=92.99 E-value=0.75 Score=32.65 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 10 KEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~ 28 (150)
-+++.+|+.+|..|+++|.
T Consensus 7 ~~~v~~I~~~I~~i~~~v~ 25 (117)
T smart00503 7 FEKVEEIRANIQKISQNVA 25 (117)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 117
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=92.91 E-value=0.73 Score=39.86 Aligned_cols=55 Identities=13% Similarity=0.325 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
++|++.+..+++++..|.++.+....+++.+++++.+|++++..+++....++.+
T Consensus 2 ~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 56 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDA 56 (378)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444444555555555555555555555555555443
No 118
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.90 E-value=0.34 Score=46.56 Aligned_cols=56 Identities=9% Similarity=0.385 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+.||+.|+.||...++-=.+|+..|..|-.+=..+|.++..||.|...|+..+..|
T Consensus 424 E~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 424 EADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555554444444455555555555555555555444
No 119
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.79 E-value=0.73 Score=43.60 Aligned_cols=54 Identities=7% Similarity=0.396 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
.+++.+|++.|..|++++..+.++|..|+..+..|.+.+.+.+.....|.+.+.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777776666666666666666666655554
No 120
>KOG2264|consensus
Probab=92.64 E-value=0.62 Score=45.10 Aligned_cols=48 Identities=6% Similarity=0.228 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
.++.+|+.+-.+|.+||+++.+-|.+||+.|..-|.|.+.||..|..-
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 344444455555555555555555566655555556666666555443
No 121
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=92.63 E-value=0.76 Score=41.19 Aligned_cols=25 Identities=0% Similarity=0.221 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKV 32 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~ 32 (150)
.|-++..++++.+..|+.+-..+-.
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk 58 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSK 58 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544433
No 122
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.59 E-value=0.87 Score=37.60 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy9603 30 IKVDMGSI 37 (150)
Q Consensus 30 LK~DV~~L 37 (150)
+++.++.|
T Consensus 82 q~~el~~L 89 (251)
T PF11932_consen 82 QEQELASL 89 (251)
T ss_pred HHHHHHHH
Confidence 33333333
No 123
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=92.56 E-value=1.2 Score=36.01 Aligned_cols=56 Identities=9% Similarity=0.288 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGS--------IKDDMGSIKEDMASIKED 61 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~--------LK~DV~~LK~Dvs~lK~D 61 (150)
+..++.+++.|++++..|+.-+..|+.....++....+ +++.|..||.....||+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555554444443 344555566655555544
No 124
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=92.48 E-value=0.81 Score=33.26 Aligned_cols=45 Identities=11% Similarity=0.393 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
.+|.+|.++|..|-.-|..|..||+.+.+|+..-|.|-+.-++.+
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rl 69 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 345555555555555555555555555555555555554444433
No 125
>PRK09039 hypothetical protein; Validated
Probab=92.45 E-value=0.89 Score=39.86 Aligned_cols=53 Identities=2% Similarity=0.247 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD----DMGSIKEDM 55 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~----DV~~LK~Dv 55 (150)
+++|..|+..++.|.+.|...++-..+.+.-+..|++.+..+.. ++..+|+++
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44444444445555555544444445555555555555555432 334445555
No 126
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.38 E-value=1.3 Score=35.51 Aligned_cols=48 Identities=8% Similarity=0.290 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
+..+.+.+..++..+..+...+..||..+..|+..+.++|.-...|+.
T Consensus 93 k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 93 KADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666666666666666666655554444443
No 127
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=92.31 E-value=0.94 Score=40.49 Aligned_cols=59 Identities=24% Similarity=0.584 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKV-------------DMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~-------------DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
++.++.|++++.++++.+..|+.-+..++. -...|++...+|++.+..|++.+..|++.
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544333 22334444444444445555444444443
No 128
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=92.30 E-value=0.71 Score=31.47 Aligned_cols=53 Identities=15% Similarity=0.360 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKVDMGSIK-EDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~DV~~LK-~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
+.-|..++.++.+..+-|.+|.-+|..+= ++-..+++.|...|.++..+|.++
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666666666664 555677778888888888887764
No 129
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.17 E-value=1.5 Score=31.94 Aligned_cols=38 Identities=5% Similarity=0.254 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGS 43 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~ 43 (150)
++.|.+.|..--+-|.-|+-.|.+||..-..|.+++.+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555554444
No 130
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=92.04 E-value=0.15 Score=45.07 Aligned_cols=29 Identities=3% Similarity=0.312 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
.|...+..+.+.+..+...+..|++.+.+
T Consensus 155 ~lEd~~~~i~~~~~~~~k~i~~l~~kl~D 183 (370)
T PF02994_consen 155 ELEDRIEEIEQAIKELEKRIKKLEDKLDD 183 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334443333
No 131
>PHA02607 wac fibritin; Provisional
Probab=91.93 E-value=0.46 Score=43.92 Aligned_cols=55 Identities=20% Similarity=0.442 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhhcCCCC
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM-----------GSIKEDMASIKEDIGGYG 66 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV-----------~~LK~Dvs~lK~DigGyg 66 (150)
.|...+.||..||.++.+.+..++.+-..+.++.+|+ ..+..|+.-+|..++-|-
T Consensus 93 qv~~n~~dI~~lk~~~~~~~~~l~~~~~~~~~~~~~iG~~~p~~d~~~rTVr~di~~IK~elG~y~ 158 (454)
T PHA02607 93 QINQNVADIEVLKKDVSDTTDKLAGTTNEVDEIEADIGVFNPEADPVTRTIRNDILWIKTELGAYP 158 (454)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcCCcCcccCCCccchhhhHHHHHHHhccCC
Confidence 4556666777777777777777777777777777777 347889999999999883
No 132
>PLN02320 seryl-tRNA synthetase
Probab=91.80 E-value=0.85 Score=42.52 Aligned_cols=57 Identities=12% Similarity=0.401 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDM---------GSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV---------~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
|-.+-++...+++.+..|+.+-..+-..| ..|++.+.+||+++..|++++..+.+++
T Consensus 95 l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l 160 (502)
T PLN02320 95 VLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDEL 160 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666555443333 3444445555555555555555554444
No 133
>KOG0250|consensus
Probab=91.80 E-value=0.68 Score=46.74 Aligned_cols=56 Identities=11% Similarity=0.408 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
|+.....+.++.+++++++.-+.+++..++..++.+.++++||..+|..++.+|..
T Consensus 304 i~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~ 359 (1074)
T KOG0250|consen 304 IEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEE 359 (1074)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445555555555555555555555555555555555555443
No 134
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.75 E-value=0.62 Score=34.62 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 19 DMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 19 Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
....+++.+.++++.+..||.....|+.+|..||+|
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 344555555555555555555555555555555554
No 135
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.64 E-value=2.6 Score=32.25 Aligned_cols=55 Identities=7% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.+..|...|...|....+|..+=.+|+.=+..|+..-..+-+.++.|+..|+++.
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333333333333333333344444444444443
No 136
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=91.61 E-value=0.93 Score=38.48 Aligned_cols=46 Identities=11% Similarity=0.331 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
+.++..+.+|.+++..+++.|..|+.+|+.||.|-..|=+-|.-|.
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777777777777777777777776653
No 137
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=91.56 E-value=4.5 Score=37.80 Aligned_cols=58 Identities=10% Similarity=0.314 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGV 67 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~ 67 (150)
+..+++-++-.++|+..++.||+++..|+....++.+.+..|+++++.|++-+...+.
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4556777777889999999999999999999999999999999999999999855443
No 138
>PRK02119 hypothetical protein; Provisional
Probab=91.53 E-value=3.4 Score=28.99 Aligned_cols=56 Identities=2% Similarity=0.085 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.++.+.+.|..|..-++....=|.+|..=|.....++..|+..+..|++.+.++..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35556667777777777777777777777777777777777777777777766543
No 139
>KOG1962|consensus
Probab=91.48 E-value=0.9 Score=38.34 Aligned_cols=43 Identities=5% Similarity=0.328 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
|++.|++++.+.+.+.....+|+.+||.-.+.+...-..|.+|
T Consensus 159 ~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 159 DLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 140
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.45 E-value=1.9 Score=37.45 Aligned_cols=40 Identities=5% Similarity=0.401 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~L 44 (150)
++..+++++..|+.+..++.+.+.+|..+-..|.+++.+|
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333333333333333333
No 141
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=91.35 E-value=1.8 Score=36.03 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMV 21 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~ 21 (150)
|.||..+-+-|-.|.+-|.
T Consensus 71 r~DiarvA~lvinlE~kvD 89 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVD 89 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455554444444444333
No 142
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=91.26 E-value=0.48 Score=41.95 Aligned_cols=8 Identities=0% Similarity=0.376 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy9603 48 MGSIKEDM 55 (150)
Q Consensus 48 V~~LK~Dv 55 (150)
+..+...+
T Consensus 167 ~~~~~k~i 174 (370)
T PF02994_consen 167 IKELEKRI 174 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 143
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=91.23 E-value=3.7 Score=28.72 Aligned_cols=33 Identities=3% Similarity=0.349 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.|+.++..++.++..|+.-...+...+.+++..
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666554
No 144
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.15 E-value=1.8 Score=37.55 Aligned_cols=46 Identities=4% Similarity=0.398 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
.++++.|+.+.+++.+++..|..+-.+|.+++..|++...+|++.-
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE 94 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEE 94 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444444444444444444444433
No 145
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.06 E-value=3.1 Score=30.37 Aligned_cols=53 Identities=9% Similarity=0.290 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
|.-|+-+|.+||+.-..|.+++..++.-=..|-+.-..||++-..-++.+..|
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555555555554444443
No 146
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.04 E-value=2.3 Score=30.79 Aligned_cols=52 Identities=6% Similarity=0.256 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.|..+|..--+-|+-|.-+|.+||..-+.|..+++++......|...-..||
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433333333333333
No 147
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=90.99 E-value=1.8 Score=37.70 Aligned_cols=49 Identities=18% Similarity=0.413 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
|+.++++++....++.++++=|.++|.-+..|+..-+.|..-|..+|+.
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333
No 148
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=90.96 E-value=1.5 Score=33.39 Aligned_cols=47 Identities=4% Similarity=0.339 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
-|..|.+.|..|-++|..||.+|.+|=+.-+.|+-...-|++-+..+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666666666666666666666666666666655
No 149
>KOG3850|consensus
Probab=90.93 E-value=1.5 Score=40.46 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
|.++|++||+-...|.+++..||+++.
T Consensus 265 ileeL~eIk~~q~~Leesye~Lke~~k 291 (455)
T KOG3850|consen 265 ILEELREIKETQALLEESYERLKEQIK 291 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888764
No 150
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=90.91 E-value=1.5 Score=34.17 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASI 30 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~L 30 (150)
.+..+|++|.+++..+++||..|
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ai 25 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAI 25 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444
No 151
>PF10874 DUF2746: Protein of unknown function (DUF2746); InterPro: IPR022704 The proteins in this entry are uncharacterised.
Probab=90.86 E-value=0.95 Score=31.13 Aligned_cols=7 Identities=43% Similarity=1.108 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy9603 33 DMGSIKE 39 (150)
Q Consensus 33 DV~~LK~ 39 (150)
||..|.+
T Consensus 34 DigglRe 40 (57)
T PF10874_consen 34 DIGGLRE 40 (57)
T ss_pred HHHHHHH
Confidence 3333333
No 152
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.83 E-value=1.4 Score=40.55 Aligned_cols=63 Identities=8% Similarity=0.306 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy9603 5 DMGSIKEDMASIKEDMV-SIKE---DMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGV 67 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~-~LK~---DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~ 67 (150)
.++.|+..-..+...|. .++. |+.+|+.++..||+++..++.....++.++..+=..++=.-.
T Consensus 44 ~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~ 110 (429)
T COG0172 44 ELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPH 110 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCc
Confidence 33444444444444443 1221 345566666666666666666666666666665555544433
No 153
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.75 E-value=2 Score=36.34 Aligned_cols=25 Identities=4% Similarity=0.331 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCC
Q psy9603 40 DMGSIKDDMGSIKEDMASIKEDIGG 64 (150)
Q Consensus 40 DV~~LK~DV~~LK~Dvs~lK~DigG 64 (150)
++.++++++..++..+..++.++.-
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555556666666666665543
No 154
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.73 E-value=2.4 Score=32.48 Aligned_cols=54 Identities=11% Similarity=0.280 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
+|.+.++.|...|...|+...+|..+=..|+.=+.+|++--.++-..+++|+..
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqak 66 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAK 66 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555555543
No 155
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=90.57 E-value=1.7 Score=32.63 Aligned_cols=49 Identities=4% Similarity=0.339 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
-|..|.+.|..|-++|..||..|.+|-.+-+.|+-....|++=+..+..
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777777777777777777777777777766665544
No 156
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=90.55 E-value=0.19 Score=36.78 Aligned_cols=43 Identities=12% Similarity=0.467 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
|..|..++..|..++..|+..|..|+..+..+++....|+.-+
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 3444555555555555555555555555555555554444433
No 157
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=90.49 E-value=1.9 Score=35.07 Aligned_cols=43 Identities=9% Similarity=0.355 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
.+...|+.++..|++-+..|...+..|+++...+++|-..|-.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433
No 158
>PRK04406 hypothetical protein; Provisional
Probab=90.49 E-value=4.7 Score=28.51 Aligned_cols=57 Identities=5% Similarity=0.202 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.-++.|.+.|..|..-++..-.=|.+|..=|.....+|..|+..+..|++.+.++..
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345566777777777777777777777777777777777777777777777766653
No 159
>smart00338 BRLZ basic region leucin zipper.
Probab=90.47 E-value=1.4 Score=29.36 Aligned_cols=13 Identities=8% Similarity=0.491 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q psy9603 30 IKVDMGSIKEDMG 42 (150)
Q Consensus 30 LK~DV~~LK~DV~ 42 (150)
|+..|+.|+..+.
T Consensus 45 L~~~~~~l~~e~~ 57 (65)
T smart00338 45 LKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 160
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=90.43 E-value=2.3 Score=34.57 Aligned_cols=44 Identities=11% Similarity=0.384 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
.++.+...|+..+.+|++-+..|.+.+..|+++...+++|-..|
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555554444
No 161
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=90.41 E-value=0.59 Score=35.12 Aligned_cols=36 Identities=6% Similarity=0.488 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
+..+.+-|..|+.++..++.+|..+++++....+.|
T Consensus 64 L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i 99 (133)
T PF06148_consen 64 LVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEI 99 (133)
T ss_dssp ----------HHHHHHHHHHHHHHHHHS-STTHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444433
No 162
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=90.39 E-value=2.5 Score=35.68 Aligned_cols=58 Identities=21% Similarity=0.397 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhcCCC
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE---DMASIKEDIGGY 65 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~---Dvs~lK~DigGy 65 (150)
.|++.++.|-.+|..|..-+..++..|...++-+..+|+-+..+++ ++.-+++.++..
T Consensus 19 ~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~hl~~nvP~~ 79 (243)
T PF07160_consen 19 NLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQHLKENVPPH 79 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3455555555556666666666666555555566666666655544 455566666643
No 163
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.38 E-value=1.3 Score=40.61 Aligned_cols=59 Identities=7% Similarity=0.359 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMA-SIKV---DMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~-~LK~---DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
.....++.++.+|+...+.+...|. .++. |+..|++++..||+++..++....+++.++
T Consensus 36 ~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l 98 (429)
T COG0172 36 EERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAEL 98 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3445666666677777777777776 3332 457777777777777777777777777665
No 164
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=90.34 E-value=3.4 Score=28.92 Aligned_cols=37 Identities=5% Similarity=0.347 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
+-+|+.+++.|.++.+--..|.+.|..+.+....+++
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655555555555555544444443
No 165
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=90.28 E-value=2 Score=30.44 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9603 37 IKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 37 LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
||.++.+|+.++..++.-+..
T Consensus 48 LKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 48 LKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333
No 166
>PF10874 DUF2746: Protein of unknown function (DUF2746); InterPro: IPR022704 The proteins in this entry are uncharacterised.
Probab=90.27 E-value=1 Score=30.99 Aligned_cols=18 Identities=11% Similarity=0.652 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9603 31 KVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 31 K~DV~~LK~DV~~LK~DV 48 (150)
.+++..+++||..|.+|+
T Consensus 25 ~~~~~~~~rDigglReel 42 (57)
T PF10874_consen 25 REGFREMRRDIGGLREEL 42 (57)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 167
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=90.14 E-value=1.7 Score=31.66 Aligned_cols=38 Identities=13% Similarity=0.446 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 20 MVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 20 v~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
|.+|.+||.+|-.-|..|-.||..+..|+..-|++-+.
T Consensus 27 ~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaar 64 (78)
T COG4238 27 IDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 34444444444444444444444444444444444433
No 168
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.13 E-value=2.3 Score=37.98 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDM 41 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV 41 (150)
++.+++...++...|+++....++|.++...+|.+|
T Consensus 282 ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 282 LSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444
No 169
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.86 E-value=2.8 Score=33.62 Aligned_cols=41 Identities=10% Similarity=0.329 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
.+..++..+..+...+..|++.+..|+..+..||.-...|+
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444
No 170
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=89.77 E-value=3.2 Score=34.55 Aligned_cols=48 Identities=6% Similarity=0.232 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
.++..+..++.++..+..+..++..++.++..++..+...+.++...+
T Consensus 81 ~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~ 128 (334)
T TIGR00998 81 ALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAE 128 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444444444444444444444444444444444444333333
No 171
>KOG0971|consensus
Probab=89.73 E-value=1.7 Score=43.97 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 28 ASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 28 ~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
..|..||..+|+-+.+|..|+.+||.+|.+-
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3688899999999999999999999999875
No 172
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=89.72 E-value=1.7 Score=29.88 Aligned_cols=33 Identities=0% Similarity=0.277 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
+..+..++..+++.+..++++.+.|+.+++.|.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444444444444444444444444443
No 173
>PRK01156 chromosome segregation protein; Provisional
Probab=89.67 E-value=2.2 Score=40.84 Aligned_cols=29 Identities=3% Similarity=0.295 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
..+..|+.++..++.-+.+++.+|..|++
T Consensus 688 ~~l~~l~~~~~~l~~~i~~l~~~~~~l~e 716 (895)
T PRK01156 688 KALDDAKANRARLESTIEILRTRINELSD 716 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33333333333333333333333333333
No 174
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=89.62 E-value=3.1 Score=28.50 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 22 SIKEDMASIKVDMGS-IKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 22 ~LK~DV~~LK~DV~~-LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.+++.+.++.+++.. +|+-+.+++++ +|+.++++++
T Consensus 37 ~~~~~~~~~~~~~~~~~k~~~~~~~~~---~~e~~~e~~d 73 (74)
T PF12732_consen 37 DLKDKAKDLYEEAKEKVKEKAEETADE---AKEKAKELKD 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhh
Confidence 334444444444443 44444443322 4444444443
No 175
>KOG2264|consensus
Probab=89.57 E-value=1.6 Score=42.42 Aligned_cols=46 Identities=7% Similarity=0.283 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
++.+|..--.+|.+||+++.+-|++||..+-.-++|+..||..|+.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 3444444445555666666666666666666666666666666543
No 176
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=89.55 E-value=0.64 Score=34.92 Aligned_cols=41 Identities=10% Similarity=0.398 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
+..+.+.|..|+.++..++++|..++.++....+.|...-+
T Consensus 64 L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~ 104 (133)
T PF06148_consen 64 LVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLE 104 (133)
T ss_dssp ----------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666666666555555555554433
No 177
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=89.42 E-value=3.2 Score=32.55 Aligned_cols=38 Identities=8% Similarity=0.377 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
+.+..+..=+.+-++|+..++..+..|++.+..|++|+
T Consensus 46 ~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~ 83 (126)
T PF07028_consen 46 EELKNLSKIQESQRSELKELKQELDVLSKELQALRKEY 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333433344444444444444444444444444444
No 178
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=89.42 E-value=2.6 Score=34.32 Aligned_cols=50 Identities=8% Similarity=0.356 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhc
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDD-----MGSIKEDMASIKEDI 62 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D-----V~~LK~Dvs~lK~Di 62 (150)
-.+|+.+++.+.++|..|++=+..-..-..+||.- +..||+|++.-..||
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~v 85 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDV 85 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhh
Confidence 34555555555555555555554444444455544 244555555544444
No 179
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=89.41 E-value=0.64 Score=32.22 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 32 VDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 32 ~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
++|..||+-|++|.+.++.|+.+-+.||+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444443
No 180
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=89.41 E-value=3 Score=38.19 Aligned_cols=18 Identities=11% Similarity=0.422 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9603 42 GSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 42 ~~LK~DV~~LK~Dvs~lK 59 (150)
..+..|+..++.+++.++
T Consensus 249 e~v~kdi~~a~~~L~~m~ 266 (424)
T PF03915_consen 249 ETVAKDISRASKELKKMK 266 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444444
No 181
>PRK02793 phi X174 lysis protein; Provisional
Probab=89.39 E-value=5.6 Score=27.77 Aligned_cols=52 Identities=10% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+.+.|..|..-++....=|.+|..=|.....+|..|+..+..|++.+.++.+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455555555555555555555555566666666666666666666666544
No 182
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=89.39 E-value=2.8 Score=34.14 Aligned_cols=54 Identities=13% Similarity=0.379 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKED-----MGSIKDDMGSIKEDMA 56 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~D-----V~~LK~DV~~LK~Dvs 56 (150)
.++=++|+.+|+.+.++|..|++=+..-..-...||.- ..+||+|++.=..||.
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq 86 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQ 86 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhh
Confidence 34557788888888888888888887777777777776 4677777766555554
No 183
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=89.37 E-value=3 Score=36.63 Aligned_cols=49 Identities=10% Similarity=0.389 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccC
Q psy9603 21 VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVDK 69 (150)
Q Consensus 21 ~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~~ 69 (150)
.+|+.-+..++..|...|++|++|+..|..|+..++..+.-+..++...
T Consensus 70 ~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~ 118 (301)
T PF06120_consen 70 TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITE 118 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 3455555555555666666666666666666555554444434444333
No 184
>PRK04325 hypothetical protein; Provisional
Probab=89.33 E-value=5.3 Score=28.04 Aligned_cols=57 Identities=4% Similarity=0.217 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
+++.+.+.|..|..-++....=|.+|..=|..-..+|..|+.-+..|.+.+.++...
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 59 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANPD 59 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455666777777777777777777777777777777777777777777777776544
No 185
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.25 E-value=2.9 Score=37.29 Aligned_cols=58 Identities=19% Similarity=0.432 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhhhcC
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM-------------GSIKEDMASIKEDIG 63 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV-------------~~LK~Dvs~lK~Dig 63 (150)
.+.++..++++++-..+...-|+++....+.|.++...+|++| ..+|+=|..||++|.
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIK 345 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666666665 244555555555553
No 186
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.23 E-value=2.5 Score=39.14 Aligned_cols=51 Identities=12% Similarity=0.341 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
+++.+..+++.+..++.+..+++..+..|+.|-.+.++.+..++..++.+|
T Consensus 381 l~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 381 LQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444
No 187
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.23 E-value=2.4 Score=39.29 Aligned_cols=42 Identities=12% Similarity=0.294 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
++.|.+.++.|+.+...+++.+..|+.|-...++.+..+++.
T Consensus 385 leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~ 426 (569)
T PRK04778 385 LEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 188
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=89.23 E-value=3.1 Score=33.71 Aligned_cols=27 Identities=7% Similarity=0.380 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 22 SIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 22 ~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
.++..|..|+++...|+.-+..|+...
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~ 150 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKC 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 189
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=89.22 E-value=1.7 Score=37.52 Aligned_cols=23 Identities=4% Similarity=0.463 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 30 IKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 30 LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
.|..|+.|+++|..||.+|..|.
T Consensus 198 ~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 198 FREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 190
>PF07902 Gp58: gp58-like protein; InterPro: IPR012892 Sequences found in this entry are derived from a number of bacteriophage and prophage proteins. They are similar to gp58 (Q38355 from SWISSPROT), a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H [].
Probab=89.18 E-value=1.2 Score=42.51 Aligned_cols=43 Identities=5% Similarity=0.208 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
|..-+.+|+++++++.++...|.+++.+++.|.+-|..|+++|
T Consensus 263 i~~~~gaVS~vqQtads~~~rLq~aE~n~SSL~QTV~GLqs~V 305 (601)
T PF07902_consen 263 ISNREGAVSRVQQTADSYQRRLQDAEGNYSSLTQTVRGLQSTV 305 (601)
T ss_pred hhhhhhHHHHHHHHHHHHHhHHHHhHhHHHHHHHHHHHHHhhh
Confidence 3333344444444444444444444444444444444444433
No 191
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=89.17 E-value=2.9 Score=36.64 Aligned_cols=62 Identities=13% Similarity=0.333 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYG 66 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg 66 (150)
.|..||..|.+|.+.+..++..+.+...|...+|.-...|+.++..||+.+...++=|.--|
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khG 174 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHG 174 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 35566666666666677776666666667777777777777777777777766655554444
No 192
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=89.15 E-value=1.8 Score=29.65 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMAS-IKVDMGSI 37 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~-LK~DV~~L 37 (150)
.|++.+..+++.+..+.+++.+ +|+-+..+
T Consensus 30 ~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 60 (74)
T PF12732_consen 30 KLKDKAEDLKDKAKDLYEEAKEKVKEKAEET 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666655 55555553
No 193
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=89.14 E-value=4.2 Score=30.81 Aligned_cols=46 Identities=4% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
.++.++..+......|-+..-.++..+..+|..+.++.+....|+.
T Consensus 31 ~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~ 76 (150)
T PF07200_consen 31 ELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELES 76 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333333333444444444433333333333
No 194
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=89.04 E-value=3.4 Score=34.88 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
+.+|+.|-.+|..|..-+..++..|...++-+..+|+-+..++++.
T Consensus 21 ~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~ 66 (243)
T PF07160_consen 21 KDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQ 66 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666666665555443
No 195
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=88.99 E-value=5.7 Score=28.74 Aligned_cols=57 Identities=9% Similarity=0.362 Sum_probs=37.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 4 EDMGSIK-EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 4 ~Di~~Lk-~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+|++.+. +.-+.|..++..|+..+..|-.-|..+|++...|+++-..|..=|..|-+
T Consensus 8 ~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 8 EDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555333 33556777777777777777777777777777777777777776666644
No 196
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=88.97 E-value=1.8 Score=37.69 Aligned_cols=61 Identities=13% Similarity=0.417 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy9603 5 DMGSIKEDMASIKEDM--V----SIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGY 65 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv--~----~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGy 65 (150)
.++.++..+..++.|+ . .++.-..++-.+++.|++....|+.+...+|+|+..++.++.-+
T Consensus 176 ~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 176 EISNLTNELSNLRNDIDKFQEREDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred HHHHhhhhHHHhhchhhhhhhhhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3445555555555552 1 12222234444555666666677777777777777777776543
No 197
>PRK02224 chromosome segregation protein; Provisional
Probab=88.92 E-value=2.7 Score=39.96 Aligned_cols=39 Identities=10% Similarity=0.421 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 20 MVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 20 v~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+..++++++.++.++..+...+..+..++..++.++.++
T Consensus 358 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 198
>PHA03395 p10 fibrous body protein; Provisional
Probab=88.87 E-value=3 Score=30.90 Aligned_cols=56 Identities=13% Similarity=0.400 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
|+.||+.+.++|..|.+-|+.+++.+ .||++|.+-+..+-+-+..+-+-|+.+-+-
T Consensus 9 Ir~dIkavd~KVdalQ~~V~~l~~nl----pdv~~l~~kLdaq~~~Ltti~tkv~~I~di 64 (87)
T PHA03395 9 IRQDIKAVSDKVDALQAAVDDVRANL----PDVTEINEKLDAQSASLDTISSAVDNITDI 64 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcC----CcHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence 55666666666666666555554322 356666666666666666666666655443
No 199
>KOG0977|consensus
Probab=88.85 E-value=2.1 Score=40.57 Aligned_cols=37 Identities=8% Similarity=0.484 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
|+.+++.+|.++..|.+|+..||.++..|..++..+|
T Consensus 153 leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 153 LEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3333333333333333333334433333333333333
No 200
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=88.80 E-value=0.61 Score=38.82 Aligned_cols=21 Identities=14% Similarity=0.477 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVS 22 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~ 22 (150)
+|.+|..|.+.|+.+++....
T Consensus 101 LkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566667777766666665544
No 201
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=88.74 E-value=3.1 Score=28.46 Aligned_cols=30 Identities=10% Similarity=0.441 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 23 IKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 23 LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
.-..|..|+.++..|+.-+.+|++.+..|.
T Consensus 56 as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 56 ASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555555555543
No 202
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=88.73 E-value=3.7 Score=28.21 Aligned_cols=54 Identities=4% Similarity=0.239 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
|.+.|..|..-++-.-.-|.+|..=|.....+|..|+..+..|.+.+.++....
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 55 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDPS 55 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 677888999999999999999999999999999999999999999988887543
No 203
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=88.67 E-value=3.8 Score=30.48 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
.+..|+.+|..|.+.|..|+.-...+.
T Consensus 7 ~v~~I~~~i~~i~~~v~~l~~l~~~~~ 33 (151)
T cd00179 7 EVEEIRGNIDKISEDVEELQKLHSQLL 33 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 204
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.67 E-value=2.7 Score=39.89 Aligned_cols=53 Identities=6% Similarity=0.366 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.-+.++.+|++.|..|+++|.++..+|..|+..+..+.+.+..++.....+.+
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~ 377 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE 377 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666655555544
No 205
>PRK14160 heat shock protein GrpE; Provisional
Probab=88.63 E-value=1.9 Score=36.06 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
.++.|+..+..|++.+..|+..+..||....-+..|...+|..+..=++++
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 105 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGI 105 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555554444443
No 206
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=88.47 E-value=2.1 Score=31.92 Aligned_cols=37 Identities=11% Similarity=0.408 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 17 KEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 17 K~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
.+.+..+++.+.++..++..||..+.++++.+..||+
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 79 SSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444
No 207
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=88.37 E-value=4.1 Score=30.87 Aligned_cols=57 Identities=5% Similarity=0.303 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
++.++..+......|-+..-.++..+.++|..|..+.+....|++....++..+..+
T Consensus 32 ~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 32 LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666676777666666667777777777777777777766666666655544
No 208
>KOG2629|consensus
Probab=88.37 E-value=2.6 Score=37.25 Aligned_cols=34 Identities=12% Similarity=0.375 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
+|-.+++.||.=...|+.++..|+.+++.+|+++
T Consensus 158 Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lv 191 (300)
T KOG2629|consen 158 ELSRALASLKNTLVQLSRNIEKLESEINTIKQLV 191 (300)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666666666554
No 209
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=88.28 E-value=3.3 Score=37.04 Aligned_cols=57 Identities=19% Similarity=0.538 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKE-------------DMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~-------------DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+++.++.+++++..|+..+..++. -+..|+.....|++.+++|++....|++.+..+
T Consensus 339 l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 339 LEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466777777777777777766654 345677777788888888888888888877776
No 210
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.23 E-value=7 Score=27.38 Aligned_cols=55 Identities=7% Similarity=0.388 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
|..|.++-..|..-...+.+=|..|+..+..+-..+..|+..+..+-.++..+++
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444444444444444444444444444455555444444444444443
No 211
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=88.22 E-value=2.5 Score=31.47 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKED 26 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~D 26 (150)
|+.+|..|...|..|+.-...+.+-
T Consensus 11 I~~~i~~i~~~v~~l~~l~~~~~t~ 35 (151)
T cd00179 11 IRGNIDKISEDVEELQKLHSQLLTA 35 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666666666655555543
No 212
>KOG0971|consensus
Probab=88.20 E-value=2.7 Score=42.59 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDM 27 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV 27 (150)
|+..+|+.+.+|..|+..||++|
T Consensus 333 eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 333 EVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 213
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.14 E-value=5.2 Score=31.13 Aligned_cols=40 Identities=8% Similarity=0.332 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
++.+..+...+.++|.+|..=+..|..||..+.+.+.++|
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444444333
No 214
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=88.14 E-value=3.3 Score=38.40 Aligned_cols=55 Identities=25% Similarity=0.499 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
|.+.++.+.+.+..+++....+++.+..|..|=..-|+.+..++.++..+|.-|.
T Consensus 377 i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 377 IQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666666666666666665554
No 215
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=88.12 E-value=2.2 Score=33.31 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGS 50 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~ 50 (150)
.+|..|.+++..+++||..|-+-.....+|.+.|..=.+.+=.||+.
T Consensus 6 kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisd 52 (121)
T PF03310_consen 6 KEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISD 52 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777555555555555555555555555543
No 216
>KOG3294|consensus
Probab=88.07 E-value=1.2 Score=38.68 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q psy9603 125 KRGYGVNKR 133 (150)
Q Consensus 125 ~~gyg~~~~ 133 (150)
++++.+++.
T Consensus 227 ~~~~~a~p~ 235 (261)
T KOG3294|consen 227 AAGAAASPA 235 (261)
T ss_pred ccccccCcc
Confidence 334444443
No 217
>KOG0995|consensus
Probab=88.03 E-value=2.9 Score=39.92 Aligned_cols=12 Identities=8% Similarity=0.340 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVS 22 (150)
Q Consensus 11 ~dv~~LK~Dv~~ 22 (150)
+++..|+..+.+
T Consensus 308 eE~e~lq~~~d~ 319 (581)
T KOG0995|consen 308 EEIEKLQKENDE 319 (581)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 218
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=88.02 E-value=2.5 Score=29.02 Aligned_cols=35 Identities=0% Similarity=0.337 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 18 EDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 18 ~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
..+..+..+++.+++.+..++++.+.|+.++..|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444455444444444444444444443
No 219
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.01 E-value=1.4 Score=38.09 Aligned_cols=32 Identities=3% Similarity=0.448 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 30 IKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 30 LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
|+..|...|+.+.+|+++|..||.+|..|..+
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444444444433
No 220
>KOG3433|consensus
Probab=88.00 E-value=3.4 Score=34.68 Aligned_cols=61 Identities=13% Similarity=0.268 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
+.=+.+|.+++++.+++..+|.+-+...|.+-..-+++..+|+....+||.++..+|.++.
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~ 140 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELA 140 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777666666666666666666666666666666665543
No 221
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=87.97 E-value=2.4 Score=31.64 Aligned_cols=39 Identities=10% Similarity=0.430 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 23 IKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 23 LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
|-+-+..|++.+..+.+++..|++.+..+++.+..+|.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555555543
No 222
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=87.95 E-value=5.3 Score=32.38 Aligned_cols=24 Identities=4% Similarity=0.426 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
.++.|+.++..++..+..|+..+.
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 223
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.89 E-value=6.8 Score=30.05 Aligned_cols=9 Identities=11% Similarity=0.660 Sum_probs=3.8
Q ss_pred HHHHhhhhc
Q psy9603 54 DMASIKEDI 62 (150)
Q Consensus 54 Dvs~lK~Di 62 (150)
.|.+|+.||
T Consensus 97 ~veEL~~Dv 105 (120)
T PF12325_consen 97 EVEELRADV 105 (120)
T ss_pred HHHHHHHHH
Confidence 344444443
No 224
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=87.85 E-value=2.9 Score=38.02 Aligned_cols=17 Identities=18% Similarity=0.347 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9603 14 ASIKEDMVSIKEDMASI 30 (150)
Q Consensus 14 ~~LK~Dv~~LK~DV~~L 30 (150)
+.||.+++.||..|..|
T Consensus 42 ~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 42 HSLKKENNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 225
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=87.80 E-value=4.2 Score=35.63 Aligned_cols=62 Identities=11% Similarity=0.260 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
+|..|..+.+.+++++.++..-..|+.-+|.-...|+.++..||+-+....+=|..+--=|.
T Consensus 117 Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv 178 (302)
T PF09738_consen 117 LKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLV 178 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeC
Confidence 56777777777888877777777777777777777777777777777776666655443333
No 226
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=87.77 E-value=2.2 Score=37.77 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMA---SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~---~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.+||+.|+.-|+.|.++|..+|.=|. +-+.|-..+|+-|.+||..+..+.+.+.+|.+.
T Consensus 256 ~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeeh 317 (336)
T PF05055_consen 256 IKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEH 317 (336)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 57888888888888888877776553 222333456666666666666666666655443
No 227
>PF13166 AAA_13: AAA domain
Probab=87.71 E-value=3 Score=38.55 Aligned_cols=63 Identities=13% Similarity=0.400 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYG 66 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg 66 (150)
.++..++.++..++..+..++..+..++..+..++.++.+|++.+...+.-+..+-+...-+|
T Consensus 410 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g 472 (712)
T PF13166_consen 410 EDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLG 472 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 334444444444444455555555555555555555555555544433333333333333443
No 228
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=87.60 E-value=7.7 Score=27.13 Aligned_cols=30 Identities=3% Similarity=0.298 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKV 32 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~ 32 (150)
++-+.++...-..|.+.|..+.+...+++.
T Consensus 20 ~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 20 DQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444
No 229
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=87.47 E-value=3.4 Score=33.06 Aligned_cols=53 Identities=23% Similarity=0.413 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIK-EDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK-~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
..+++.|..++..|..-++.++.||. ++--| +++..|-+.|..||+++..-=+
T Consensus 57 ~~~~~~v~~~~~~i~~k~~El~~L~~-~d~~kv~~~E~L~d~v~eLkeel~~el~ 110 (146)
T PF05852_consen 57 CEIKNKVSSLETEISEKKKELSHLKK-FDRKKVEDLEKLTDRVEELKEELEFELE 110 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666653 22221 2334444444444444443333
No 230
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.44 E-value=3.3 Score=36.72 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9603 42 GSIKDDMGSIKEDMAS 57 (150)
Q Consensus 42 ~~LK~DV~~LK~Dvs~ 57 (150)
..|..|+.++-++-.+
T Consensus 143 ~qLe~d~qs~lDEkeE 158 (319)
T PF09789_consen 143 EQLERDLQSLLDEKEE 158 (319)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 231
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.43 E-value=1.7 Score=41.96 Aligned_cols=57 Identities=9% Similarity=0.412 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
+..|..||+.||.|+...++==.+|+..|..|-.+=..+|.++..||.|...|.+.+
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKL 476 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555666666665555667777777777777776654
No 232
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.38 E-value=2.7 Score=40.50 Aligned_cols=42 Identities=10% Similarity=0.412 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
.+|..+.+.|..|+.++..||..+.+||..|..|++..++++
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555544444444444443
No 233
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.35 E-value=6.4 Score=36.78 Aligned_cols=22 Identities=5% Similarity=0.268 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy9603 40 DMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 40 DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
+...|++++..++.-+..|...
T Consensus 117 ~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 234
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=87.20 E-value=3.4 Score=28.68 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIK 24 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK 24 (150)
++|++.+.+++.++..|+
T Consensus 15 ~eL~~~l~elk~eLf~LR 32 (69)
T PRK14549 15 EEREEKLEELKLELLKER 32 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555555544444
No 235
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=87.20 E-value=6.3 Score=31.91 Aligned_cols=31 Identities=3% Similarity=0.301 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIK 38 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK 38 (150)
.++..+..|+.++..++..+.+|+..+..+|
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 236
>KOG0946|consensus
Probab=87.15 E-value=3.3 Score=41.36 Aligned_cols=56 Identities=13% Similarity=0.317 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
.+|+.+.++..++.++|++..+|+.....|++.|..+-+..+.||+.++.||...+
T Consensus 661 kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 661 KYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555666666666666666666666666666666677777777776544
No 237
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=87.14 E-value=3 Score=29.99 Aligned_cols=49 Identities=6% Similarity=0.395 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.|++||+.+.+-|..|.+.|..|++.+ .+|++|.+-+..+-.-+..+-+
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~~----~~v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESNL----PDVTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333 3566677777666666655544
No 238
>KOG4010|consensus
Probab=87.11 E-value=4.8 Score=33.91 Aligned_cols=21 Identities=5% Similarity=0.484 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMG 35 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~ 35 (150)
+|++++..+.++|..||+=.+
T Consensus 48 elr~EL~kvEeEI~TLrqVLa 68 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLA 68 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 239
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=87.07 E-value=3.8 Score=40.27 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhhcCCCC
Q psy9603 49 GSIKEDMASIKEDIGGYG 66 (150)
Q Consensus 49 ~~LK~Dvs~lK~DigGyg 66 (150)
+.||+-+..||.++.=.|
T Consensus 669 s~LK~k~E~Lk~Evaka~ 686 (762)
T PLN03229 669 SDLKSKIELLKLEVAKAS 686 (762)
T ss_pred hhHHHHHHHHHHHHHhcC
Confidence 567777888887774333
No 240
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=87.00 E-value=4.2 Score=36.25 Aligned_cols=25 Identities=20% Similarity=0.527 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 37 IKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 37 LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
+.+++.++++.+..++..+...+..
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555444443
No 241
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=86.96 E-value=6.4 Score=32.09 Aligned_cols=39 Identities=10% Similarity=0.384 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
..+.+..|+..+..++.-|..|++.+..|+..+.++|.-
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555443
No 242
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=86.96 E-value=3.1 Score=37.89 Aligned_cols=39 Identities=13% Similarity=0.306 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGS--IKDDMGSI 51 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~--LK~DV~~L 51 (150)
...|+++-..||.+.++||..|+.|++++.. +-+||..+
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~ 74 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETN 74 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 3445555555555555555555555555543 33444433
No 243
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.91 E-value=2.7 Score=43.78 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
+++.|++.+.++.+.+.++++.+.++..++..+.+.+.+|++.+
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqL 399 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL 399 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333333333333333333333
No 244
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=86.80 E-value=2.4 Score=38.66 Aligned_cols=63 Identities=13% Similarity=0.339 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMAS---------IKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGV 67 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~---------LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~ 67 (150)
-++.|++.+.+|++.|..+++-+.+ ++.++..|.+.+..|++-+..|+..+..++.....-..
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~ 235 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESSSDQ 235 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 3445555555555555555555554 57788888888888888888888888887776554443
No 245
>PRK00736 hypothetical protein; Provisional
Probab=86.79 E-value=8.2 Score=26.65 Aligned_cols=50 Identities=10% Similarity=0.280 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.+.|..|+..|+....-|.+|-.-|..-..+| ..|+.-+..|.+.+.++.
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i-------~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTV-------EQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 34455555555555555555555555554444 444445555555555443
No 246
>KOG4674|consensus
Probab=86.77 E-value=2.8 Score=44.60 Aligned_cols=55 Identities=9% Similarity=0.314 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
+++.+...+++.+|...|..++.|+..|..+..+||+.+.....++..|+.++..
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~ 1289 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDR 1289 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555444444444444444444444444444433
No 247
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=86.74 E-value=5 Score=37.28 Aligned_cols=57 Identities=16% Similarity=0.387 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
+..|+.+.+.|..+.+++..|.+.+.+|..==..-+..|.+||+.-..||..+....
T Consensus 100 ~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~ 156 (560)
T PF06160_consen 100 KQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHS 156 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666666666666666655555555555555555555555555444
No 248
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.63 E-value=8.7 Score=26.90 Aligned_cols=52 Identities=6% Similarity=0.319 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
....|......+.+=|..|+..+.++-..+..|+..++.+-.++..|++.++
T Consensus 20 EGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 20 EGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555556666666666666666666666666666666665544
No 249
>PRK02793 phi X174 lysis protein; Provisional
Probab=86.62 E-value=5.8 Score=27.69 Aligned_cols=53 Identities=4% Similarity=0.260 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
+.+.|..|+..|+-...-|.+|-.=|.+...+|..|+..+..|++-+..+...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45678888888888888888888888888888888888888887777666543
No 250
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=86.58 E-value=3 Score=29.04 Aligned_cols=19 Identities=16% Similarity=0.443 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIK 24 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK 24 (150)
.++|++.+.+|+.+.-.|+
T Consensus 14 ~~eL~~~l~elk~elf~LR 32 (67)
T CHL00154 14 DSEISEEIIKTKKELFDLR 32 (67)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655555
No 251
>KOG0996|consensus
Probab=86.56 E-value=3.2 Score=42.74 Aligned_cols=49 Identities=12% Similarity=0.443 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.|..++.++..+|..+.+...++..++..+..|+.++..+.+.+.++|+
T Consensus 543 ~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 543 ELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444444444444444444444
No 252
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=86.56 E-value=7.8 Score=27.39 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
+||.++.+|+.++.+++.-+..+..++
T Consensus 47 eLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 47 ELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666666666666666666555544
No 253
>PRK00295 hypothetical protein; Provisional
Probab=86.54 E-value=7.8 Score=26.77 Aligned_cols=44 Identities=7% Similarity=0.179 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
.+.|..|+..++-...-|.+|-.=|.....+|..|+..+..|.+
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666555555555555555555555555544444433
No 254
>KOG4603|consensus
Probab=86.51 E-value=2.7 Score=35.10 Aligned_cols=13 Identities=15% Similarity=0.532 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q psy9603 46 DDMGSIKEDMASI 58 (150)
Q Consensus 46 ~DV~~LK~Dvs~l 58 (150)
+.++.||..|+.+
T Consensus 123 e~i~~L~kev~~~ 135 (201)
T KOG4603|consen 123 EEIQELKKEVAGY 135 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 255
>PF07902 Gp58: gp58-like protein; InterPro: IPR012892 Sequences found in this entry are derived from a number of bacteriophage and prophage proteins. They are similar to gp58 (Q38355 from SWISSPROT), a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H [].
Probab=86.49 E-value=1.3 Score=42.28 Aligned_cols=39 Identities=5% Similarity=0.224 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGS 43 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~ 43 (150)
+++.++.+++++...|..++.+++.|++-|..|+++|..
T Consensus 269 aVS~vqQtads~~~rLq~aE~n~SSL~QTV~GLqs~Vs~ 307 (601)
T PF07902_consen 269 AVSRVQQTADSYQRRLQDAEGNYSSLTQTVRGLQSTVSD 307 (601)
T ss_pred HHHHHHHHHHHHHhHHHHhHhHHHHHHHHHHHHHhhhhc
Confidence 344444444444444444444444444444444444433
No 256
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=86.42 E-value=8.7 Score=27.50 Aligned_cols=14 Identities=7% Similarity=0.370 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHh
Q psy9603 45 KDDMGSIKEDMASI 58 (150)
Q Consensus 45 K~DV~~LK~Dvs~l 58 (150)
|+=|..++..|+.+
T Consensus 83 r~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 83 RQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 33334444444433
No 257
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=86.32 E-value=9.3 Score=28.81 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 27 MASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 27 V~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
+..-.+.-..+...|..+|++|..||..+.
T Consensus 76 ~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~ 105 (139)
T PF05615_consen 76 RENYEQLNEEIEQEIEQAKKEIEELKEELE 105 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444333
No 258
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.25 E-value=7.9 Score=28.09 Aligned_cols=53 Identities=9% Similarity=0.299 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
|.-|+-+|.+||+.-++|..++.++..-...|.+.-..||+.-..-.+.+.+|
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777777777777666666655554
No 259
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=86.20 E-value=9.4 Score=26.71 Aligned_cols=56 Identities=5% Similarity=0.215 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
|+..|.+.|..|-.-...|+++=..|++.+..+..+=+.|++-+..-++.|..+=+
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777887777777777777777777777777777777777666666555433
No 260
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.00 E-value=4.3 Score=42.36 Aligned_cols=45 Identities=9% Similarity=0.214 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
..++.+|...+.+..+.+.+++..+..+.+++..+.+.+..|++.
T Consensus 354 ~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeq 398 (1486)
T PRK04863 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQ 398 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344444444444444333
No 261
>PRK04654 sec-independent translocase; Provisional
Probab=85.91 E-value=5.1 Score=33.95 Aligned_cols=11 Identities=9% Similarity=0.453 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy9603 22 SIKEDMASIKV 32 (150)
Q Consensus 22 ~LK~DV~~LK~ 32 (150)
+||..+..++.
T Consensus 58 ELrk~l~~~~~ 68 (214)
T PRK04654 58 ELKRSLQDVQA 68 (214)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 262
>KOG0018|consensus
Probab=85.90 E-value=2.9 Score=42.54 Aligned_cols=41 Identities=12% Similarity=0.343 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 21 VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 21 ~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
..+-+.|.++.-.++.++.++......|..|++.|..+-+.
T Consensus 714 ~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 714 QRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444555555555555555666655555443
No 263
>KOG0998|consensus
Probab=85.88 E-value=0.74 Score=45.12 Aligned_cols=30 Identities=7% Similarity=0.355 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDM 34 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV 34 (150)
|++.|...+...+.+|++++.++.++++.+
T Consensus 492 ~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~ 521 (847)
T KOG0998|consen 492 DLNLLPLQLSNDNREISSLEKELNELQQQL 521 (847)
T ss_pred hhhhcccccccchhhHHHHHHHHhhhHHHH
Confidence 333333333333333333333333333333
No 264
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.82 E-value=5.2 Score=35.69 Aligned_cols=25 Identities=20% Similarity=0.431 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 31 KVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 31 K~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
.+++..++..+.++++.+..++..+
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444444443
No 265
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=85.62 E-value=3.7 Score=35.13 Aligned_cols=56 Identities=14% Similarity=0.341 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKV-------DMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~-------DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
|++.|.++|.+|+..+..+++.+..... -...|++=+.+..+.+..|+++...+++
T Consensus 275 ~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~ 337 (370)
T PF02181_consen 275 SLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEE 337 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555433322 1233333344444444444444444443
No 266
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=85.61 E-value=3.6 Score=29.76 Aligned_cols=28 Identities=0% Similarity=0.372 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 18 EDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 18 ~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
..+..|+.-+..|..++..+++.+++|+
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 267
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=85.60 E-value=3.8 Score=29.73 Aligned_cols=22 Identities=5% Similarity=0.330 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 33 DMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 33 DV~~LK~DV~~LK~DV~~LK~D 54 (150)
.|..|.+.+..+.+.+..+|..
T Consensus 78 ~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 78 RIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 268
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.52 E-value=6.8 Score=34.17 Aligned_cols=50 Identities=12% Similarity=0.397 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
||+|...+|+.+.++..+-.+|.....+|...++.+.+.+..|.-+.+.|
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777776666666666666666666666665555444443
No 269
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=85.52 E-value=6 Score=34.28 Aligned_cols=52 Identities=10% Similarity=0.356 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
|++-|+.+.+.+..++..+..|+.|-+.|-..|..-|.++.-.+..+++|++
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666666666666666666667777666666666654
No 270
>PRK11020 hypothetical protein; Provisional
Probab=85.45 E-value=7.4 Score=30.31 Aligned_cols=65 Identities=14% Similarity=0.414 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-----------HHHHH----------HHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIK-----EDMASIKVDMGSIKEDMGSIKD-----------DMGSI----------KEDM 55 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK-----~DV~~LK~DV~~LK~DV~~LK~-----------DV~~L----------K~Dv 55 (150)
+|++|..|.+.+..++.-+..++ +=|++++.+++.|-..|+.||. ++..| ..||
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK~EQADM 82 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITKKEQADM 82 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccHHHHHhH
Confidence 57888888888777766554433 2244555555555555555542 22222 4578
Q ss_pred HHhhhhcCCCC
Q psy9603 56 ASIKEDIGGYG 66 (150)
Q Consensus 56 s~lK~DigGyg 66 (150)
-.||..|.|+=
T Consensus 83 GkLKKSVrGLV 93 (118)
T PRK11020 83 GKLKKSVRGLV 93 (118)
T ss_pred HHHhhccccee
Confidence 88888777753
No 271
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=85.30 E-value=3.1 Score=27.47 Aligned_cols=20 Identities=5% Similarity=0.398 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIK 24 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK 24 (150)
+.++|++.+.+++.++..|+
T Consensus 6 s~~EL~~~l~~lr~eLf~Lr 25 (55)
T TIGR00012 6 SKEELAKKLDELKKELFELR 25 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776666
No 272
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=85.28 E-value=5.4 Score=36.27 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVD 33 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~D 33 (150)
.+..|+++|.++|+....|.+++..||.+
T Consensus 213 ~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 213 GLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888888888888777763
No 273
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=85.25 E-value=1.8 Score=30.02 Aligned_cols=29 Identities=14% Similarity=0.392 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 25 EDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 25 ~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
++|..||+-|..|.+.++.|+.+-+.||.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444443
No 274
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.13 E-value=3.9 Score=39.53 Aligned_cols=24 Identities=8% Similarity=0.390 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 36 SIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 36 ~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.|+....+=|+-+..||..++.++
T Consensus 485 ~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 485 RLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444555555555554
No 275
>KOG1760|consensus
Probab=84.75 E-value=10 Score=29.96 Aligned_cols=32 Identities=13% Similarity=0.402 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.|++.=..|-..|++|.+.+..++.+|..||.
T Consensus 85 ~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 85 QLEEKKETLEKEIEELESELESISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667777788888888888888888885
No 276
>PRK14161 heat shock protein GrpE; Provisional
Probab=84.74 E-value=6.6 Score=31.91 Aligned_cols=37 Identities=8% Similarity=0.272 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
++++|+++.+.+..|++.+.++|.....++.|...+|
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 277
>KOG4674|consensus
Probab=84.74 E-value=5.1 Score=42.80 Aligned_cols=56 Identities=11% Similarity=0.437 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIK----EDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK----~DV~~LK~DV~~LK~Dvs~lK 59 (150)
+|++.|++++..||..+...+.-+++|+.+...|| .++.+|+.++..+.+.+..++
T Consensus 1307 ~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~ 1366 (1822)
T KOG4674|consen 1307 NDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLE 1366 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666665555 666666666666655555544
No 278
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=84.73 E-value=10 Score=30.78 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASI----------KVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~L----------K~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
..++.++.++..++..+..++.+...+ +.|+...+..+..++..+..++..+..++.++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 133 (322)
T TIGR01730 64 LALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLR 133 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555555555555555544432 234555556666666666666666666666554
No 279
>PRK04325 hypothetical protein; Provisional
Probab=84.69 E-value=9.8 Score=26.70 Aligned_cols=52 Identities=6% Similarity=0.177 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
|.+.|..|+..|+-...-|.+|-.=|.+-..+|..|+..+..|.+-+..+..
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777777777777777777777777777777777777777666655543
No 280
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=84.63 E-value=0.78 Score=33.58 Aligned_cols=43 Identities=9% Similarity=0.383 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
+=|..|-.++..|...+.+|+..|..|+..+..+++....|+.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~ 67 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQR 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 3344555555555555555555555555555555555444444
No 281
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=84.61 E-value=3.1 Score=38.96 Aligned_cols=25 Identities=4% Similarity=0.450 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
.+|+.|+.+|..|+..|++|+.-++
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~la 49 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLA 49 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888888887775
No 282
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=84.59 E-value=4.3 Score=32.46 Aligned_cols=45 Identities=16% Similarity=0.450 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIK-VDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK-~DV~~LK~DV~~LK~DV 48 (150)
++-|..++..|+.-+.++..|+. +.--| .++..|-+.|.+||+|+
T Consensus 60 ~~~v~~~~~~i~~k~~El~~L~~-~d~~kv~~~E~L~d~v~eLkeel 105 (146)
T PF05852_consen 60 KNKVSSLETEISEKKKELSHLKK-FDRKKVEDLEKLTDRVEELKEEL 105 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555 33333 34444555555555443
No 283
>KOG0239|consensus
Probab=84.53 E-value=4.6 Score=38.86 Aligned_cols=64 Identities=9% Similarity=0.426 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----------HHHHHHHHHHHHhhhhcCCC
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMG-------SIKEDMGSIK----------DDMGSIKEDMASIKEDIGGY 65 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~-------~LK~DV~~LK----------~DV~~LK~Dvs~lK~DigGy 65 (150)
++.|..|+..|..||.....++.++..+..++. .+..+++++. +-...|+.+|.+||--|..|
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~ 319 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVF 319 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEE
Confidence 344555555555555555555555444333333 3333333333 33346677888888877776
Q ss_pred C
Q psy9603 66 G 66 (150)
Q Consensus 66 g 66 (150)
-
T Consensus 320 C 320 (670)
T KOG0239|consen 320 C 320 (670)
T ss_pred E
Confidence 5
No 284
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.46 E-value=5.4 Score=37.26 Aligned_cols=31 Identities=6% Similarity=0.288 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
+|.++...||+++..++.-+..|++.+..++
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444888888888888888888887775543
No 285
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=84.43 E-value=9.5 Score=29.96 Aligned_cols=39 Identities=5% Similarity=0.262 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~L 44 (150)
|+.+..=+.+-+.++..+++-+..|+.++..|+.|+-+.
T Consensus 48 lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~r 86 (126)
T PF07028_consen 48 LKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLER 86 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333344444455555555555555555555555444
No 286
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=84.25 E-value=9 Score=29.54 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKE 25 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~ 25 (150)
|.-.+.+.+...++.+|+..++.
T Consensus 38 K~~~~~~~~~ae~~~~~~~~~a~ 60 (115)
T COG4980 38 KKSGDALFELAEDKGTDILMIAD 60 (115)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 287
>PRK10698 phage shock protein PspA; Provisional
Probab=84.24 E-value=8.5 Score=31.86 Aligned_cols=42 Identities=12% Similarity=0.415 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
.+.++.|++.+...+.-+..|+.++..|+..+.++|.-=..|
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L 139 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQAL 139 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555554433333
No 288
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=84.21 E-value=3.8 Score=36.04 Aligned_cols=38 Identities=16% Similarity=0.463 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYG 66 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg 66 (150)
+|+.-++.+.+.+.+.|.+|..++..|.+++..|..|-
T Consensus 71 ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~ 108 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQ 108 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555554444443
No 289
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=84.21 E-value=3.5 Score=33.61 Aligned_cols=43 Identities=12% Similarity=0.373 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGS---IKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~---LK~DV~~LK~DV~~LK~Dv 55 (150)
+.++++-+..|.+-+..|+.||.. ++++|..+.+++..+++.+
T Consensus 113 L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 113 LEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555433 3344444444444444443
No 290
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=84.20 E-value=6.5 Score=35.02 Aligned_cols=52 Identities=10% Similarity=0.221 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
|.+-+-.+..++.+-|.+-..|+.-|+.||..++++++-++.+|+.+..|++
T Consensus 62 ~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 62 ISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333444444455555555555555555555555555555555555555544
No 291
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=84.16 E-value=6.2 Score=28.27 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSI 23 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~L 23 (150)
++|+..--..+..+-+.-..+
T Consensus 7 ~~ev~~sl~~l~~~~~~~~~~ 27 (97)
T PF09177_consen 7 KDEVQSSLDRLESLYRRWQRL 27 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444333
No 292
>KOG4010|consensus
Probab=84.13 E-value=6.6 Score=33.10 Aligned_cols=52 Identities=13% Similarity=0.406 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDM-----GSIKDDMGSIKEDMA 56 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV-----~~LK~DV~~LK~Dvs 56 (150)
+=++|+.+++.+.++|..||+=.+.-..-..+||+.. .+||+|++.=..||.
T Consensus 45 Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~d~q 101 (208)
T KOG4010|consen 45 EKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNISKSWKDVQ 101 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhh
Confidence 3457888888888888888887777666777777654 677777765555554
No 293
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=84.11 E-value=12 Score=26.11 Aligned_cols=30 Identities=3% Similarity=0.208 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKV 32 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~ 32 (150)
+..+..|++++..+...+.........|..
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544444443
No 294
>PRK00295 hypothetical protein; Provisional
Probab=84.05 E-value=12 Score=25.92 Aligned_cols=52 Identities=6% Similarity=0.141 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
++.+.|..|..-++....=|.+|..=|.....+|..|+..+..|.+.+.++.
T Consensus 2 ~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 2 SLEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677899999999999999999999999999999999999999988888875
No 295
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=84.05 E-value=4.4 Score=27.62 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q psy9603 42 GSIKDDMGSIKEDM 55 (150)
Q Consensus 42 ~~LK~DV~~LK~Dv 55 (150)
..++..+..|+.+.
T Consensus 59 ~~~~~~lk~l~~~~ 72 (103)
T PF00804_consen 59 QKIKKRLKQLSKDN 72 (103)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 44455555565554
No 296
>KOG0239|consensus
Probab=83.97 E-value=6.9 Score=37.72 Aligned_cols=48 Identities=8% Similarity=0.367 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
++.+..|++.|..||.....|+.++..+.+.+.+...-+..+..++++
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 287 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLES 287 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555554444444444444444444433
No 297
>PRK02119 hypothetical protein; Provisional
Probab=83.95 E-value=10 Score=26.61 Aligned_cols=51 Identities=2% Similarity=0.200 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
+.+.|..|+..|+-...-|.+|-.=|.....+|..|+..+..|++-+..+.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566666666666666666666666666666666666666665555544
No 298
>PRK04406 hypothetical protein; Provisional
Probab=83.92 E-value=9.5 Score=26.95 Aligned_cols=51 Identities=6% Similarity=0.270 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
+.+.|..|+..|+-...-|.+|-.=|.....+|..|+..+..|++-+..+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556666666666666666666666666666666666666655544443
No 299
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=83.75 E-value=1.6 Score=40.73 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 26 DMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 26 DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
-|++||..+++||+++.+|++.|
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 44444444444444444444333
No 300
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=83.69 E-value=5.1 Score=33.41 Aligned_cols=21 Identities=14% Similarity=0.466 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
.|+.++++|.+-|..++....
T Consensus 100 rLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555444
No 301
>PRK14127 cell division protein GpsB; Provisional
Probab=83.57 E-value=4.7 Score=30.66 Aligned_cols=31 Identities=6% Similarity=0.367 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 26 DMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 26 DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
|+..|-.++..||+.+..|++-+..++..++
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333333344444444444433333333
No 302
>PRK00736 hypothetical protein; Provisional
Probab=83.54 E-value=9.9 Score=26.26 Aligned_cols=51 Identities=6% Similarity=0.201 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy9603 16 IKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYG 66 (150)
Q Consensus 16 LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg 66 (150)
+.+.|..|.+-++-.-.=|..|-.=|...-.++..|+..+..|.+.+....
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666677777777777777888888888888888888877776543
No 303
>KOG4797|consensus
Probab=83.46 E-value=7.8 Score=30.20 Aligned_cols=45 Identities=18% Similarity=0.409 Sum_probs=24.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKED-MVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 9 Lk~dv~~LK~D-v~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
|..-|.-+|+- |-.++++|..||+-|..|-+-++.|.++-+.||+
T Consensus 50 IeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 50 IEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444 2345556666666666666666666666555554
No 304
>PRK10132 hypothetical protein; Provisional
Probab=83.45 E-value=4.4 Score=30.57 Aligned_cols=22 Identities=14% Similarity=0.457 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMAS 29 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~ 29 (150)
.|..++..|++||..|-+|+.+
T Consensus 9 ~~~~q~e~L~~Dl~~L~~~le~ 30 (108)
T PRK10132 9 DVDDGVQDIQNDVNQLADSLES 30 (108)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555443
No 305
>PRK04654 sec-independent translocase; Provisional
Probab=83.44 E-value=8.1 Score=32.78 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9603 28 ASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 28 ~~LK~DV~~LK~DV~~LK~DV 48 (150)
.+||..+..++..+..++..+
T Consensus 57 ~ELrk~l~~~~~~i~~~~~~l 77 (214)
T PRK04654 57 EELKRSLQDVQASLREAEDQL 77 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655555544443
No 306
>COG3388 Predicted transcriptional regulator [Transcription]
Probab=83.36 E-value=12 Score=28.52 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 33 DMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 33 DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
=+..++.|++++++.+..|++|++.+
T Consensus 74 ~ie~i~~dl~ei~e~~~~i~e~~~~l 99 (101)
T COG3388 74 FIEEIIGDLSEINEEAENIEEDVAKL 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777777777765
No 307
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=83.29 E-value=2 Score=37.88 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKV 32 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~ 32 (150)
+.+...+..|+.+|.+|+++|..+|.
T Consensus 90 Es~~~kl~RL~~Ev~EL~eEl~~~~~ 115 (388)
T PF04912_consen 90 ESPEQKLQRLRREVEELKEELEKRKA 115 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555543
No 308
>PRK14160 heat shock protein GrpE; Provisional
Probab=83.24 E-value=10 Score=31.78 Aligned_cols=41 Identities=10% Similarity=0.291 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
+..+++++..|++.+..|++.+.+||.....++.|...+|.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555543
No 309
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=82.96 E-value=10 Score=27.44 Aligned_cols=39 Identities=8% Similarity=0.362 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~L 44 (150)
+..|++.+..|.+-|..+|++...|+.+-..|+.=|..|
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333333
No 310
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=82.91 E-value=7.3 Score=28.23 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
.|+..+..|...+..|...+..+.+.++++|+.+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555543
No 311
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=82.88 E-value=2.7 Score=34.12 Aligned_cols=48 Identities=8% Similarity=0.378 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMA---SIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~---~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
+.|+..+..--+.-+-|.++|. .|+..+..||.++..||+++ ++++..
T Consensus 3 eD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 3344444444444444444443 46667777777777777777 555443
No 312
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=82.84 E-value=12 Score=31.47 Aligned_cols=48 Identities=8% Similarity=0.327 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
+..+.+.++.+++-+..+.+=+..||..|..|.+.|+++|+-...||.
T Consensus 94 ~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~a 141 (225)
T COG1842 94 KQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKA 141 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666666666666666666655555543
No 313
>KOG3156|consensus
Probab=82.77 E-value=9.3 Score=32.54 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 25 EDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 25 ~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
+++..|..+.+.||.|+..+|++
T Consensus 116 sEF~~lr~e~EklkndlEk~ks~ 138 (220)
T KOG3156|consen 116 SEFANLRAENEKLKNDLEKLKSS 138 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 314
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=82.58 E-value=11 Score=24.39 Aligned_cols=18 Identities=0% Similarity=0.340 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9603 38 KEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 38 K~DV~~LK~DV~~LK~Dv 55 (150)
...+..|.+.+..+.+-+
T Consensus 57 ~~~~~~~~~~L~~~~~~l 74 (86)
T PF06013_consen 57 NQAFRQLNEALEELSQAL 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 315
>KOG4196|consensus
Probab=82.53 E-value=14 Score=29.40 Aligned_cols=59 Identities=12% Similarity=0.356 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 3 KEDMGSIKEDMASIKED-------------MVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~D-------------v~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
++++-.||..-.+||+- -.+|..+=++|.++|..||++++.|..++..+|..-..|-+-
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555543 245555666677777777777777777777777666655543
No 316
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=82.52 E-value=7.8 Score=32.65 Aligned_cols=23 Identities=4% Similarity=0.226 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
++..+.++...+..+...+.++.
T Consensus 147 ~~~~~~~~~~a~~~~~~a~~~~~ 169 (331)
T PRK03598 147 LENARSSRDQAQATLKSAQDKLS 169 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444443333
No 317
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=82.51 E-value=18 Score=29.82 Aligned_cols=61 Identities=7% Similarity=0.289 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGG 64 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigG 64 (150)
.-|..|...+.....-......-|..|-..|..|..++...|.....++.+|...=+++..
T Consensus 176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~ 236 (237)
T PF00261_consen 176 EKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNE 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4456666666666666666666667777777777777777777777777777665555554
No 318
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=82.42 E-value=8.7 Score=31.94 Aligned_cols=35 Identities=9% Similarity=0.341 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
.+..++..+..++.++..+++++..++..+...+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~ 122 (334)
T TIGR00998 88 NLAALVRQTKQLEITVQQLQAKVESLKIKLEQARE 122 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333333333333333
No 319
>KOG4687|consensus
Probab=82.37 E-value=4.1 Score=36.55 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGG 64 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigG 64 (150)
.|-.||.+-|+.-..|++|+..|....++|+.|+..+++-.+.+++.+.+
T Consensus 87 dLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a 136 (389)
T KOG4687|consen 87 DLAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMA 136 (389)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhc
Confidence 34445555555555566666666666666666666666666666666544
No 320
>KOG0995|consensus
Probab=82.24 E-value=8.3 Score=36.92 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASI 30 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~L 30 (150)
++.|++..+.|+.|++-+++=|++|
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~ 285 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQM 285 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 321
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=82.17 E-value=7.5 Score=28.10 Aligned_cols=33 Identities=6% Similarity=0.449 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDM 41 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV 41 (150)
|+..++.|+..+..|..++..+++.++.|+..+
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 322
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=82.11 E-value=3.7 Score=38.47 Aligned_cols=51 Identities=4% Similarity=0.382 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSI------------------------------KEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~L------------------------------K~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
++|+.|+..|..||..|.+|+.-++.- .+|++++|++|+.....|..|++
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l~d 104 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESLED 104 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHHhh
Confidence 467788888888888888888765431 56778888888777666777765
Q ss_pred h
Q psy9603 61 D 61 (150)
Q Consensus 61 D 61 (150)
.
T Consensus 105 a 105 (514)
T PF11336_consen 105 A 105 (514)
T ss_pred H
Confidence 4
No 323
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=82.10 E-value=7.9 Score=34.40 Aligned_cols=37 Identities=14% Similarity=0.380 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 23 IKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 23 LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.|+....|+.||..|+.-+.+++.|+..|++-++..+
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 3333344444444444444444445555544444443
No 324
>PF14282 FlxA: FlxA-like protein
Probab=81.96 E-value=12 Score=27.65 Aligned_cols=52 Identities=4% Similarity=0.312 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKED----MASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~D----V~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
..|+.|+..|..|++.|..|+.| -.+-+.=+..|...|..|..-+..|....
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777773 23334444555555555555555554433
No 325
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=81.96 E-value=13 Score=25.61 Aligned_cols=45 Identities=11% Similarity=0.370 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 16 IKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 16 LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
|.++++.+|++--.++.-...--.-..+|.+.|..|+..|.++++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444445555555544444444444455555555555555555543
No 326
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=81.93 E-value=3.3 Score=30.42 Aligned_cols=51 Identities=12% Similarity=0.493 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Q psy9603 8 SIKEDMASIKEDMVSIKE---DMASIKVDMGSIKEDMGSIK------DDMGSIKEDMASI 58 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~---DV~~LK~DV~~LK~DV~~LK------~DV~~LK~Dvs~l 58 (150)
.+++++.+|++++...+. .+..+++++..++....+++ .|+..|-.+++.+
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~~~~~~ll~~l~~~ 62 (144)
T PF04350_consen 3 TLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAEEEIPSLLEDLNRL 62 (144)
T ss_dssp ---------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 344444455554444433 33344444444444444443 2444444444443
No 327
>KOG0933|consensus
Probab=81.87 E-value=8.1 Score=39.50 Aligned_cols=47 Identities=13% Similarity=0.496 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
.|+-++.+|+..+...|+-+.+++.-+..||+++..|+..|.....|
T Consensus 819 ~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~ 865 (1174)
T KOG0933|consen 819 RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD 865 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 33333344444443333333334444444444443333333333333
No 328
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=81.76 E-value=5.6 Score=35.30 Aligned_cols=55 Identities=15% Similarity=0.370 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
++-++.|++++..|+.++..|++.+.+-+ ..+.-+.++++-+.++...++++++-
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777766554 33333444444455555555554443
No 329
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.64 E-value=12 Score=31.46 Aligned_cols=51 Identities=8% Similarity=0.315 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.-+.+..|.+.+..+++-+.++.+=+..||..+..|.+.|..+|.-+..++
T Consensus 90 al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 90 ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555554444
No 330
>PHA01750 hypothetical protein
Probab=81.64 E-value=10 Score=27.31 Aligned_cols=32 Identities=13% Similarity=0.378 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 24 KEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 24 K~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
+++...|+.+++.+|..+.+|.+-|..||..+
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444444433
No 331
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.56 E-value=12 Score=32.25 Aligned_cols=67 Identities=13% Similarity=0.414 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCccCCCC--CCCCCCCCC
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDMGSIK----DDMGSIKEDMASIKEDIGGYGVDKRGY--GVDKRGYGV 81 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK----~DV~~LK~Dvs~lK~DigGyg~~~~gY--g~p~~gYg~ 81 (150)
.|.+++.++.+++.+|++.|..+-+-++..+ ++-+.|.+.+..|+--++--++..+|- ....++|.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~V~G~Gl~ITi~d~~~~~ 126 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVPVTGPGLVITIDDPGYSP 126 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcCCcEEEEecCCCCCc
Confidence 4444444455555555555555555555555 666777778888888777777666653 224444443
No 332
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=81.47 E-value=5.1 Score=28.82 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
+.|+.+-+.|..|.++...|.+||..+-.+...--=|+..|++=|..-|.
T Consensus 4 ~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~lRk~ 53 (74)
T PF10073_consen 4 EQLRQFIERIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRLRKK 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcC
Confidence 34555556666666666666666665555544444455555554444333
No 333
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=81.45 E-value=17 Score=26.02 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 28 ASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 28 ~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
..++.|...=...+.++|.|+..+...|..||.
T Consensus 46 ~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~ 78 (88)
T PF10241_consen 46 AEARERFARHTKLLKEMKKDLDYIFKRIRSLKA 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 334
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=81.38 E-value=17 Score=26.04 Aligned_cols=61 Identities=13% Similarity=0.345 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhc
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE----DMASIKEDI 62 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~----Dvs~lK~Di 62 (150)
||.+++.+..++..+|.--..+...|+.==++|..|+.-|.+|-.--..||+ +|+.||..+
T Consensus 9 ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 9 IRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 335
>PRK00846 hypothetical protein; Provisional
Probab=81.28 E-value=18 Score=26.06 Aligned_cols=54 Identities=4% Similarity=0.190 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.+.+.|..|..-++....=|.+|..=|......|..|+.-+..|++.+.++.+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345566666666666666666677777777777777777777777777776643
No 336
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.16 E-value=17 Score=27.85 Aligned_cols=8 Identities=50% Similarity=0.717 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy9603 9 IKEDMASI 16 (150)
Q Consensus 9 Lk~dv~~L 16 (150)
++.++...
T Consensus 122 ~~~~l~~k 129 (218)
T cd07596 122 LKKDLASK 129 (218)
T ss_pred HHHHHHHH
Confidence 33333333
No 337
>KOG4797|consensus
Probab=81.13 E-value=9.7 Score=29.70 Aligned_cols=43 Identities=12% Similarity=0.335 Sum_probs=21.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 18 EDMVSIKEDM-ASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 18 ~Dv~~LK~DV-~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+-|.-+|+-. =.++++|+.||+.|.+|-+-++.|.++-+-||+
T Consensus 52 QAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 52 QAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444432 245555555555555555555555555555554
No 338
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=81.08 E-value=11 Score=28.73 Aligned_cols=53 Identities=8% Similarity=0.393 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVD--MGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~D--V~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
|+.+-+++..++.++.++.+.+.+++.. +..+++.+..+.+-+..+-+.+.++
T Consensus 15 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 69 (120)
T PF09969_consen 15 LRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEEL 69 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444555555555555555555555443 3334444444333333333334433
No 339
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=81.05 E-value=15 Score=25.24 Aligned_cols=45 Identities=11% Similarity=0.392 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
.|++++..+|++--.++.-..+-..=...|...|..|+..|..++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666666665555555555555555555554444
No 340
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=81.05 E-value=6.5 Score=38.07 Aligned_cols=23 Identities=22% Similarity=0.562 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 19 DMVSIKEDMASIKVDMGSIKEDM 41 (150)
Q Consensus 19 Dv~~LK~DV~~LK~DV~~LK~DV 41 (150)
||..|+.|+..||++|..+++++
T Consensus 71 ev~~l~~ea~~L~~~~~~v~~~~ 93 (766)
T PF10191_consen 71 EVDRLRQEAASLQEQMASVQEEI 93 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 341
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=80.93 E-value=21 Score=27.93 Aligned_cols=61 Identities=15% Similarity=0.315 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH-----HHHHHHH---------------HHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIK-------------VDM-----GSIKEDM---------------GSIKDDM 48 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK-------------~DV-----~~LK~DV---------------~~LK~DV 48 (150)
++.||+.|+..|.++.+--++.++=|..|+ +-+ ..|++=+ ..|+.-+
T Consensus 34 v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~ 113 (146)
T PF08702_consen 34 VDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQPSNIRVLQNIL 113 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhc
Q psy9603 49 GSIKEDMASIKEDI 62 (150)
Q Consensus 49 ~~LK~Dvs~lK~Di 62 (150)
..+..+|..||+||
T Consensus 114 ~~~~~ki~~Le~~i 127 (146)
T PF08702_consen 114 RSNRQKIQRLEQDI 127 (146)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 342
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=80.88 E-value=17 Score=30.15 Aligned_cols=32 Identities=9% Similarity=0.361 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhh
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMG---SIKEDMASIKE 60 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~---~LK~Dvs~lK~ 60 (150)
+|+++...||+.+++|+..+. .++++...||+
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333 33444444444
No 343
>PF13166 AAA_13: AAA domain
Probab=80.75 E-value=9.7 Score=35.25 Aligned_cols=26 Identities=12% Similarity=0.479 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 34 MGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 34 V~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
+..++..+..+++.+..++.++.+++
T Consensus 426 i~~~~~~~~~~~~~~~~~~~~i~~l~ 451 (712)
T PF13166_consen 426 INSLEKKLKKAKEEIKKIEKEIKELE 451 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444443
No 344
>KOG3433|consensus
Probab=80.72 E-value=13 Score=31.37 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
..++...+.+.++|.+-+...|.+-.+-+.+-++|+.....||.+...||.+++.
T Consensus 87 e~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k 141 (203)
T KOG3433|consen 87 ESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAK 141 (203)
T ss_pred HHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666655555555554444444444444444444444444444443
No 345
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=80.66 E-value=14 Score=33.07 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMAS 29 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~ 29 (150)
+.+|.++|++|-.+|++--...|+-.++
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKlee 29 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEE 29 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777665555544443
No 346
>smart00150 SPEC Spectrin repeats.
Probab=80.59 E-value=12 Score=24.58 Aligned_cols=20 Identities=5% Similarity=0.295 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK 31 (150)
+...|+.||...+..|..+.
T Consensus 39 ~~~~~~~e~~~~~~~v~~~~ 58 (101)
T smart00150 39 KHEALEAELEAHEERVEALN 58 (101)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 33333334333333333333
No 347
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=80.54 E-value=9.1 Score=25.04 Aligned_cols=32 Identities=6% Similarity=0.186 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKED 40 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~D 40 (150)
|-..|.+|.+-+.+||+||..--.+++-||.=
T Consensus 6 l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRnt 37 (45)
T PF11598_consen 6 LIKQLSELNQMLQELKELLRQQIKETRFLRNT 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555556666655555555555543
No 348
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=80.52 E-value=5 Score=29.76 Aligned_cols=42 Identities=7% Similarity=0.127 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
..+-+.+.++++.|..++++|..|+..+..--.+..+|+.-|
T Consensus 4 ~l~~~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~v 45 (116)
T PF10552_consen 4 KLLMQATEEHNEKIEEVENRVDDLEENMPIDPGQQKEIQKAV 45 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 334444555555555555555555555544444444444433
No 349
>PF13514 AAA_27: AAA domain
Probab=80.49 E-value=9.2 Score=38.06 Aligned_cols=34 Identities=6% Similarity=0.490 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDM 41 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV 41 (150)
.|+.++..+++++..+...+.+|...+..++..+
T Consensus 893 ~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l 926 (1111)
T PF13514_consen 893 ELEAELEELEEELEELEEELEELQEERAELEQEL 926 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 350
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=80.45 E-value=6.5 Score=35.83 Aligned_cols=56 Identities=18% Similarity=0.414 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVS---------IKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~---------LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
|++-++.|++.|+.+++.+.. ++.++..|...+..||+-+.-|...+..|+.....
T Consensus 168 ~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 232 (475)
T PF10359_consen 168 IQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESS 232 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 456667777777777766665 46677777777777777777777777777665443
No 351
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.28 E-value=11 Score=27.90 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
|+.+-+.|..|.++...|-.||.++=.|....==||..+|+-|..-|.|
T Consensus 16 LrafIerIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D 64 (85)
T COG3750 16 LRAFIERIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLD 64 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhh
Confidence 4444445555555555555555444333333333444444444333333
No 352
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=80.13 E-value=17 Score=25.39 Aligned_cols=40 Identities=5% Similarity=0.256 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMG 42 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~ 42 (150)
..-|..++..+..+..-+..|.+-+..|+.-+...|++|.
T Consensus 6 ~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~ 45 (127)
T smart00502 6 EELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIK 45 (127)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666655553
No 353
>KOG0946|consensus
Probab=80.05 E-value=11 Score=37.88 Aligned_cols=51 Identities=8% Similarity=0.220 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
.-|.++..+++.+|++..+|+-...+|++.|..+-+..+.||..+..||..
T Consensus 664 ~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~q 714 (970)
T KOG0946|consen 664 GLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQ 714 (970)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555544444444444444444443
No 354
>KOG0964|consensus
Probab=80.03 E-value=9.6 Score=38.98 Aligned_cols=53 Identities=13% Similarity=0.448 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+..|++.+++++.+|..+-+.|..|..+|..+-.|....+.++..|++.+..+
T Consensus 680 ~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~ 732 (1200)
T KOG0964|consen 680 LKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTI 732 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444444444433333333333333333333333
No 355
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=80.02 E-value=12 Score=24.88 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
+.++|++.+.+++.++..|+---+
T Consensus 8 s~~eL~~~l~elk~eL~~Lr~q~~ 31 (58)
T PF00831_consen 8 SDEELQEKLEELKKELFNLRFQKA 31 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666655443
No 356
>KOG2629|consensus
Probab=79.87 E-value=8.6 Score=34.11 Aligned_cols=58 Identities=10% Similarity=0.317 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 6 MGSIKEDMASIKEDMV----SIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~----~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
++.|.++++.+.+-+. +|-.++..||.-...|+.++..|+.+++.||.+|-..++=+.
T Consensus 138 ~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~f~~ 199 (300)
T KOG2629|consen 138 LNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSNFAP 199 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccCC
Confidence 4455555555555443 455566677777777888888888888888877777666443
No 357
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=79.86 E-value=13 Score=34.95 Aligned_cols=54 Identities=6% Similarity=0.323 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+...+.+.+..|.++|..|.+-..+|+.-+..-|++...|-+++..|+++...+
T Consensus 39 ~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~ 92 (618)
T PF06419_consen 39 EFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEEL 92 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666555555555555555555555555555444433
No 358
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=79.71 E-value=7.9 Score=25.61 Aligned_cols=19 Identities=11% Similarity=0.469 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIK 24 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK 24 (150)
.++|++.+.+++.++..|+
T Consensus 8 ~~eL~~~l~~l~~elf~Lr 26 (57)
T cd00427 8 DEELQEKLDELKKELFNLR 26 (57)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665
No 359
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=79.66 E-value=16 Score=29.01 Aligned_cols=36 Identities=3% Similarity=0.297 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy9603 30 IKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGY 65 (150)
Q Consensus 30 LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGy 65 (150)
++.+++.+-+++..|...|.-+..-++.+=+.+.++
T Consensus 83 ~rneLtnlnsil~nL~ssvTNin~tLnnLl~aln~l 118 (140)
T PF04513_consen 83 LRNELTNLNSILNNLTSSVTNINATLNNLLQALNNL 118 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 445666666666666666666666555555555444
No 360
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=79.63 E-value=18 Score=29.43 Aligned_cols=14 Identities=0% Similarity=0.351 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q psy9603 32 VDMGSIKEDMGSIK 45 (150)
Q Consensus 32 ~DV~~LK~DV~~LK 45 (150)
..|..||...++||
T Consensus 148 r~v~~lRr~f~elr 161 (182)
T PF15035_consen 148 REVVALRRQFAELR 161 (182)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555554
No 361
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=79.57 E-value=16 Score=29.97 Aligned_cols=57 Identities=7% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK----------------------------VDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK----------------------------~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
|..|+++|..+...+..++.+...|| .||..||+.....++....++..+..
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhc
Q psy9603 58 IKEDI 62 (150)
Q Consensus 58 lK~Di 62 (150)
...++
T Consensus 94 ~~~el 98 (194)
T PF15619_consen 94 KDEEL 98 (194)
T ss_pred HHHHH
No 362
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=79.57 E-value=11 Score=36.48 Aligned_cols=49 Identities=16% Similarity=0.380 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
|.+|-+.|.+.++.+..++.-+..|++-.++|+..++.+|+|++..-++
T Consensus 241 i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 241 ILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333336666666666666666666666666666666666666655544
No 363
>PF06193 Orthopox_A5L: Orthopoxvirus A5L protein-like; InterPro: IPR010396 This family consists of several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion [].
Probab=79.57 E-value=14 Score=30.30 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
+..|+.+++.+++++..|..+-..|=+||+.-|+
T Consensus 109 ~~~IikEl~dik~~t~~LQ~es~~Lv~DIs~AKe 142 (166)
T PF06193_consen 109 KDNIIKELNDIKDETSSLQAESNSLVTDISDAKE 142 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 364
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=79.44 E-value=10 Score=29.74 Aligned_cols=15 Identities=13% Similarity=0.647 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDM 20 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv 20 (150)
|+.+++.+..+.+++
T Consensus 108 l~~~~~~~~~~~~~~ 122 (204)
T PF04740_consen 108 LNQLKEQIEDLQDEI 122 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334333333
No 365
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=79.29 E-value=6.9 Score=27.34 Aligned_cols=36 Identities=6% Similarity=0.333 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 21 VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 21 ~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
..|++++..++.+|..|+.-...+.+.+..+|..+.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555543
No 366
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=79.22 E-value=7.6 Score=28.42 Aligned_cols=46 Identities=11% Similarity=0.301 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKED--MASIK--VDMGSIKEDMGSIKDDMGS 50 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~D--V~~LK--~DV~~LK~DV~~LK~DV~~ 50 (150)
..++|++.+.+|+.++..|+-- +..+. ..+..+|.||+-|++-+..
T Consensus 9 S~eEL~e~L~elkkELf~LR~q~atgql~n~~~ir~iRR~IARilTvl~E 58 (87)
T PRK00461 9 SVEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILNE 58 (87)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777766621 11121 2455555555555555444
No 367
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=79.13 E-value=22 Score=28.99 Aligned_cols=43 Identities=12% Similarity=0.370 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
+..|+..+..++.-|..|++.+..|+..+..+|.-=.+|+.-+
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555444333
No 368
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=79.02 E-value=8.7 Score=31.34 Aligned_cols=36 Identities=11% Similarity=0.380 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q psy9603 26 DMASIKVDMGSIKEDMG---SIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 26 DV~~LK~DV~~LK~DV~---~LK~DV~~LK~Dvs~lK~D 61 (150)
-+.+|.+-+..|++||. +++++|..+.++++.+++.
T Consensus 119 ki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~ 157 (163)
T PF03233_consen 119 KIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDK 157 (163)
T ss_pred HHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444442 2334444444444444443
No 369
>PHA03161 hypothetical protein; Provisional
Probab=78.98 E-value=10 Score=30.64 Aligned_cols=43 Identities=14% Similarity=0.308 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIK-------VDMGSIKEDMGSIKDDMG 49 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK-------~DV~~LK~DV~~LK~DV~ 49 (150)
..|+..|..|.+.|.+.+.+++.|+ .++..|-.-|.+||+|+.
T Consensus 57 ~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~ 106 (150)
T PHA03161 57 KSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIH 106 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777777666 345555555555555543
No 370
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=78.91 E-value=10 Score=33.05 Aligned_cols=15 Identities=20% Similarity=0.618 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy9603 42 GSIKDDMGSIKEDMA 56 (150)
Q Consensus 42 ~~LK~DV~~LK~Dvs 56 (150)
.+|.++++.||+.++
T Consensus 238 ~~~~~~f~~L~~~L~ 252 (276)
T PF05929_consen 238 EALTEDFAALKEKLS 252 (276)
T ss_pred HHHHHHHHHHHHHhh
Confidence 444444444444444
No 371
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=78.84 E-value=18 Score=25.52 Aligned_cols=17 Identities=12% Similarity=0.489 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKED 19 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~D 19 (150)
++||+.|.+|++.|..+
T Consensus 4 ~~~l~~l~~d~~~l~~~ 20 (94)
T PF05957_consen 4 KAELEQLRADLEDLARS 20 (94)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 372
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=78.78 E-value=8 Score=37.16 Aligned_cols=42 Identities=2% Similarity=0.276 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
+|..+|..|+.+|.+|+++|..+..+|+.-...+..+.++++
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~ 124 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKIS 124 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444433333
No 373
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=78.71 E-value=18 Score=31.59 Aligned_cols=61 Identities=13% Similarity=0.351 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 2 IKEDMGSIKEDMASIKE-------DMVSIKEDMASIKVDMGS--------IKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~-------Dv~~LK~DV~~LK~DV~~--------LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
++..+..++.++++|.. +|..++..+++|+..+.. ++.++..++.....|+..++.+++.+
T Consensus 259 l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 334 (444)
T TIGR03017 259 LKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKV 334 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 374
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=78.50 E-value=12 Score=31.97 Aligned_cols=25 Identities=12% Similarity=0.375 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDM 27 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV 27 (150)
|+|++.+..++..++-.++.+|.++
T Consensus 45 k~dve~l~~e~E~~~k~l~de~~E~ 69 (231)
T COG5493 45 KQDVEELRKETEQRQKELADEKLEV 69 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655555433333
No 375
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=78.45 E-value=14 Score=31.70 Aligned_cols=53 Identities=11% Similarity=0.258 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMA----SIKVDMGSIKEDM---GSIKDDMGSIKEDMA 56 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~----~LK~DV~~LK~DV---~~LK~DV~~LK~Dvs 56 (150)
+=++.|++.+..+++.|.++.++.. .|++.+..|++-- .+|.+++..|+.=+.
T Consensus 6 ~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 6 QLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3455566666666666665554443 3555554444333 555555555544443
No 376
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=78.41 E-value=16 Score=23.92 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
++..+......|+.+|...+..|..|.
T Consensus 35 ~~~~~~~~~~~~~~ei~~~~~~l~~l~ 61 (105)
T PF00435_consen 35 ELEEQLKKHKELQEEIESRQERLESLN 61 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 344444455555555555555554444
No 377
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=78.23 E-value=13 Score=34.50 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
.+-..|-+.|..|.+=|..|+.||.
T Consensus 217 ~~Sd~lltkVDDLQD~vE~LRkDV~ 241 (426)
T smart00806 217 EDSDSLLTKVDDLQDIIEALRKDVA 241 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777775
No 378
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=78.22 E-value=2 Score=40.16 Aligned_cols=38 Identities=8% Similarity=0.410 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 21 VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 21 ~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
..+-+|+..|| -|++||..+++||+.+..|++.|+.++
T Consensus 21 ~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 21 AAMADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred hhhhhhhHHHH-HHHHHHHHHHHHHHhhcccccccchhh
Confidence 34455555555 666666666666666666666555544
No 379
>KOG0652|consensus
Probab=78.11 E-value=6.9 Score=35.36 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDM 41 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV 41 (150)
...-|.++|..||++|..++.+++.+|+.|
T Consensus 28 rtrlldnEirI~~sev~ri~he~~~~~ekI 57 (424)
T KOG0652|consen 28 RTRLLDNEIRIMKSEVQRINHELQAMKEKI 57 (424)
T ss_pred HHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333333344444444444444444433333
No 380
>KOG3251|consensus
Probab=78.05 E-value=13 Score=31.51 Aligned_cols=43 Identities=9% Similarity=0.240 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMA----------SIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~----------~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
.+|+.+|..+.+-+..++.+++ -|+ +..||.|+..|+.++...
T Consensus 36 ~~i~~sI~~~~s~~~rl~~~~~~epp~~rq~~rlr--~dQl~~d~~~l~~~l~~~ 88 (213)
T KOG3251|consen 36 NSIQRSIDQYASRCQRLDVLVSKEPPKSRQAARLR--VDQLLEDVEHLQTSLRTS 88 (213)
T ss_pred HHHHHhHHHHHHHHHHHHhHhhcCCCCcHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666664 233 566666666666665444
No 381
>PRK14161 heat shock protein GrpE; Provisional
Probab=78.03 E-value=7.9 Score=31.46 Aligned_cols=42 Identities=7% Similarity=0.296 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 16 IKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 16 LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
+..|+.++.+.+..|+..+..||+...-+..|...+|..+..
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~k 58 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEK 58 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333
No 382
>PHA01750 hypothetical protein
Probab=77.99 E-value=11 Score=27.13 Aligned_cols=31 Identities=13% Similarity=0.402 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 17 KEDMVSIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 17 K~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
++++..|+..++++|--+..|.+.|.++|.-
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444443
No 383
>KOG4687|consensus
Probab=77.93 E-value=8.7 Score=34.50 Aligned_cols=49 Identities=10% Similarity=0.260 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
..|-++|.+-|++--.|++|+.+|.+--+.|+.|+..+++-.++.+..+
T Consensus 86 qdLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~ 134 (389)
T KOG4687|consen 86 QDLAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEK 134 (389)
T ss_pred hHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666665544
No 384
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=77.77 E-value=13 Score=27.46 Aligned_cols=15 Identities=0% Similarity=0.324 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy9603 21 VSIKEDMASIKVDMG 35 (150)
Q Consensus 21 ~~LK~DV~~LK~DV~ 35 (150)
..|++-+.+|+.++.
T Consensus 97 ~~l~~~~~~l~~~l~ 111 (129)
T cd00584 97 EELTKQIEKLQKELA 111 (129)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 385
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=77.67 E-value=10 Score=33.85 Aligned_cols=40 Identities=13% Similarity=0.279 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
.+.+.+..++..+..|+.....|+.....++.++..+|++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (398)
T PTZ00454 19 DLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEE 58 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333333333333
No 386
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=77.63 E-value=12 Score=35.47 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9603 29 SIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK 45 (150)
+|++||..|..-...+|
T Consensus 423 ~LpqqI~~vs~Kc~~~K 439 (531)
T PF15450_consen 423 SLPQQIEEVSDKCDLHK 439 (531)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 33333333333333333
No 387
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=77.57 E-value=8.9 Score=34.17 Aligned_cols=55 Identities=11% Similarity=0.194 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGV 67 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~ 67 (150)
+.-|.+-+-.+..++..-|.+-..|.+.|+.||.-+..++..++++|..+-|..-
T Consensus 59 lh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 59 LHIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444455555566666666666666666666666666666666666666666543
No 388
>PRK00846 hypothetical protein; Provisional
Probab=77.57 E-value=21 Score=25.68 Aligned_cols=51 Identities=10% Similarity=0.298 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
+.+.|..|+..++-...=|.+|-.-|......|..|++-+.-|++-+..+.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777777777777777777777777777777666665
No 389
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=77.53 E-value=11 Score=28.23 Aligned_cols=36 Identities=8% Similarity=0.389 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 19 DMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 19 Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
++..+..|++.++.+.+.|+.....|++.|..|+++
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333344444444444444444444444444444333
No 390
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=77.40 E-value=4.4 Score=31.10 Aligned_cols=39 Identities=10% Similarity=0.378 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 23 IKEDMASIKVDMG-SIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 23 LK~DV~~LK~DV~-~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
++.+|.+|=+|-. .=+++|.+|+++|..|++.|+.|++.
T Consensus 66 ~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 66 IPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred hhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443 22355555556666666666555543
No 391
>PF13514 AAA_27: AAA domain
Probab=77.16 E-value=11 Score=37.64 Aligned_cols=33 Identities=12% Similarity=0.528 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
++..++.++..|..++..+.+.+..++..+..|
T Consensus 897 ~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l 929 (1111)
T PF13514_consen 897 ELEELEEELEELEEELEELQEERAELEQELEAL 929 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333333333
No 392
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=77.00 E-value=28 Score=26.25 Aligned_cols=27 Identities=4% Similarity=0.332 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
++..-++.||.-|..|..-+.-||.+|
T Consensus 69 ~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 69 ELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 393
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=76.73 E-value=17 Score=24.17 Aligned_cols=19 Identities=11% Similarity=0.413 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK 31 (150)
..+|.+.+.++|.+.-.|+
T Consensus 9 ~~eL~~~l~elk~eL~~Lr 27 (58)
T PF00831_consen 9 DEELQEKLEELKKELFNLR 27 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666665
No 394
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=76.73 E-value=20 Score=32.86 Aligned_cols=57 Identities=7% Similarity=0.157 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+..|...++.|+..++.|+..|..-|..||+....+-+--.++-+-+..+=.++.++
T Consensus 328 ~nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLqavgdt 384 (400)
T COG5613 328 LNAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQAVGDT 384 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666655555555555555444444444433
No 395
>KOG0018|consensus
Probab=76.70 E-value=9.9 Score=38.93 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy9603 40 DMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 40 DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.+++++.++...+..|.+|+.
T Consensus 726 ~i~~i~r~l~~~e~~~~~L~~ 746 (1141)
T KOG0018|consen 726 EISEIKRKLQNREGEMKELEE 746 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 396
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=76.70 E-value=25 Score=30.62 Aligned_cols=58 Identities=17% Similarity=0.358 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMA-SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGG 64 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~-~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigG 64 (150)
..|.+-|..|-+.+..+.+=+. .|.+-...+.+...+|++++..+.++++.||+.+..
T Consensus 195 ~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~~ 253 (276)
T PF05929_consen 195 ADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAALKEKLSS 253 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhC
Confidence 3344444444444443332222 133333333334445555668999999999998875
No 397
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=76.59 E-value=23 Score=29.56 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIK 24 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK 24 (150)
|++..+.++..++.++..++
T Consensus 136 ~~d~~~~~~~~a~~~l~~~~ 155 (327)
T TIGR02971 136 DLDSKALKLRTAEEELEEAL 155 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 398
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.48 E-value=15 Score=31.96 Aligned_cols=10 Identities=10% Similarity=0.431 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy9603 8 SIKEDMASIK 17 (150)
Q Consensus 8 ~Lk~dv~~LK 17 (150)
.|+.++..++
T Consensus 19 ~m~~~L~~~~ 28 (344)
T PF12777_consen 19 EMQEELEEKQ 28 (344)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 399
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=76.36 E-value=9.5 Score=29.31 Aligned_cols=24 Identities=8% Similarity=0.410 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 31 KVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 31 K~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
++||.+|+++|..|++-|+.|+..
T Consensus 82 ~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 82 QSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555543
No 400
>PRK10698 phage shock protein PspA; Provisional
Probab=76.32 E-value=29 Score=28.69 Aligned_cols=45 Identities=4% Similarity=0.265 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
+-+..|+..+...+.-+..|++++..|+.-|..+|.--.+|+.=.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777777666665443
No 401
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=76.31 E-value=20 Score=33.84 Aligned_cols=52 Identities=6% Similarity=0.316 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
|.+.|+.|.++|+.|.+-...|++-+..-|.+...|-+++++|+++...++.
T Consensus 43 v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~ 94 (618)
T PF06419_consen 43 VNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELEL 94 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666666666555544433
No 402
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=76.24 E-value=13 Score=31.88 Aligned_cols=17 Identities=18% Similarity=0.591 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDM 20 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv 20 (150)
+||..|+..+..++..+
T Consensus 281 ~~i~~l~~~~~~~~~~l 297 (370)
T PF02181_consen 281 QDIKELEKGLEKIKKEL 297 (370)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 403
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=76.20 E-value=11 Score=31.34 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy9603 32 VDMGSIKEDM 41 (150)
Q Consensus 32 ~DV~~LK~DV 41 (150)
.||+.||+|+
T Consensus 114 ~~v~~~~q~~ 123 (189)
T TIGR02132 114 KDVTKLKQDI 123 (189)
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 404
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=75.97 E-value=15 Score=27.02 Aligned_cols=33 Identities=6% Similarity=0.362 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
+.|+..++.|++-+..|+.++..++++++.+-.
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 90 EFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 405
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=75.89 E-value=12 Score=29.53 Aligned_cols=20 Identities=5% Similarity=0.439 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
...+..+|+.++.+||+++.
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~ 57 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELN 57 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555553
No 406
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=75.80 E-value=24 Score=26.64 Aligned_cols=31 Identities=3% Similarity=0.340 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 32 VDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 32 ~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
..+..+..-+.+|+.-|..|..-+..|+++|
T Consensus 65 ~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 65 SSIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544
No 407
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=75.79 E-value=19 Score=29.17 Aligned_cols=55 Identities=9% Similarity=0.217 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIK----------EDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK----------~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
+.++..++..+..++.++..++ +|+...+..+..++..+..++..+..++.++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 134 (322)
T TIGR01730 70 LAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRY 134 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455556666665555554432 355666666666666666666666666665544
No 408
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=75.71 E-value=22 Score=29.31 Aligned_cols=51 Identities=6% Similarity=0.320 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKE---------DMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~---------DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
+..++..++.++.....|.+ ||-++.+.++.++.++..++..+..|.+.|+
T Consensus 134 y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 134 YVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444455555555444443 3444555555555555555555555554444
No 409
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=75.71 E-value=9.3 Score=35.91 Aligned_cols=26 Identities=19% Similarity=0.585 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDM 27 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV 27 (150)
|.+||+.+.+-|+.|+++|++|.+=|
T Consensus 433 ~~~d~~~~~~~i~~l~~~~~sl~~~v 458 (561)
T PF00429_consen 433 LEEDLQALEDSISALQEQLTSLAEVV 458 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555656555666666665555544
No 410
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=75.52 E-value=9.4 Score=30.40 Aligned_cols=47 Identities=15% Similarity=0.431 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 15 SIKEDMVSIKEDMA----SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~----~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.|+.|+..||+..+ ..+.+|..|.+.-..+.+-|++|+..+...++|
T Consensus 59 qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQe 109 (138)
T PF03954_consen 59 QLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQE 109 (138)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHH
Confidence 34444444444443 344444444444444444444444444444433
No 411
>PHA03041 virion core protein; Provisional
Probab=75.29 E-value=15 Score=29.71 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIK 38 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK 38 (150)
++|+.++..+|++..+|+.|-..|=.||+.-|
T Consensus 96 ~ei~kE~esIKdeT~sLQ~es~~LV~DIs~Ak 127 (153)
T PHA03041 96 EEIIKELESIKDETSSLQNESDSLVDDISTAK 127 (153)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555555555555554444
No 412
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.29 E-value=18 Score=26.65 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
+-|+.|.++.++|.+||..+=.+....==|+..||+=|.--|.|-...
T Consensus 21 erIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er 68 (85)
T COG3750 21 ERIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAER 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHH
Confidence 345666666666666666555544444444444444444444444333
No 413
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=75.21 E-value=28 Score=27.69 Aligned_cols=58 Identities=7% Similarity=0.207 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASI----------KVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~L----------K~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
++...+.+++..+..+...+.+.... +.++...+.++..++..+..++..++.++...
T Consensus 17 ~~~~~~a~l~~a~~~l~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (265)
T TIGR00999 17 ELAKMAAELKVAQKRVELARKTYEREKKLFEQGVIPRQEFESAEYALEEAQAEVQAAKSELRSAREAK 84 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 34444555555555555555554432 35666777777777777777777776665543
No 414
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=75.10 E-value=16 Score=23.59 Aligned_cols=36 Identities=14% Similarity=0.518 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy9603 4 EDMGSIKED-MASIKEDMVSIKEDM-ASIKVDMGSIKE 39 (150)
Q Consensus 4 ~Di~~Lk~d-v~~LK~Dv~~LK~DV-~~LK~DV~~LK~ 39 (150)
.|++.+|++ |.+++.++..+|.+| ..+++..+...+
T Consensus 3 ~dle~~KqEIL~EvrkEl~K~K~EIIeA~~~eL~r~~~ 40 (40)
T PF08776_consen 3 SDLERLKQEILEEVRKELQKVKEEIIEAIRQELSRRST 40 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
No 415
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=75.04 E-value=20 Score=31.15 Aligned_cols=34 Identities=6% Similarity=0.315 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 21 VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 21 ~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
..+.+.+..++..++.|+.|.+.|..-|.--|.+
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~E 205 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQE 205 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333333333333333
No 416
>PF12296 HsbA: Hydrophobic surface binding protein A; InterPro: IPR021054 Hydrophobic surface binding proteins are typically between 171 to 275 amino acids in length. Although the HsbA amino acid sequence suggests that HsbA may be hydrophilic, HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) surfaces in the presence of NaCl or CaCl2. When HsbA was adsorbed on the hydrophobic PBSA surfaces, it promoted PBSA degradation via the CutL1 polyesterase. CutL1 interacts directly with HsbA attached to the hydrophobic QCM electrode surface. These results suggest that when HsbA is adsorbed onto the PBSA surface, it recruits CutL1, and that when CutL1 is accumulated on the PBSA surface, it stimulates PBSA degradation []. This entry is also characterised by a antigenic cell wall galactomannoprotein in Aspergillus fumigatus, which is a protein of 284 amino acid residues. It contains a serine- and threonine-rich region for O glycosylation, a signal peptide, and a putative glycosylphosphatidyl inositol attachment signal sequence. Ultrastructural analysis showed that the protein is present in the cell walls of hyphae and conidia []. ; PDB: 3L1N_A.
Probab=74.95 E-value=13 Score=26.85 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
|+..++.+|..|.++|..|.+.|.
T Consensus 2 d~~~v~~~i~~I~~~v~~l~~~i~ 25 (124)
T PF12296_consen 2 DAATVISDINNISTAVTKLDTAIK 25 (124)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555554
No 417
>KOG1924|consensus
Probab=74.90 E-value=66 Score=32.78 Aligned_cols=10 Identities=0% Similarity=0.312 Sum_probs=3.6
Q ss_pred HHHHHHHhhh
Q psy9603 51 IKEDMASIKE 60 (150)
Q Consensus 51 LK~Dvs~lK~ 60 (150)
|......+++
T Consensus 507 l~ae~~al~s 516 (1102)
T KOG1924|consen 507 LEAEKQALSS 516 (1102)
T ss_pred CchhhhhccC
Confidence 3333333333
No 418
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=74.89 E-value=24 Score=26.84 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
|..=|+.|..++..+...+......+.+...-+..+.+.+.++-+.+..+...+..+-+
T Consensus 98 I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~ 156 (213)
T PF00015_consen 98 ISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISE 156 (213)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHh
No 419
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=74.77 E-value=25 Score=31.40 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIK 17 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK 17 (150)
.+|-++|++.-+..+
T Consensus 10 ~~efq~Lqethr~Y~ 24 (330)
T PF07851_consen 10 QKEFQELQETHRSYK 24 (330)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444433333
No 420
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=74.51 E-value=14 Score=32.57 Aligned_cols=47 Identities=9% Similarity=0.379 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
+..|.+.+..++..+..|++...+|......++..+..|++.+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566666666666666666666666666666666555555443
No 421
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=74.47 E-value=28 Score=30.20 Aligned_cols=16 Identities=6% Similarity=0.343 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKED 19 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~D 19 (150)
.+|..++-.+.+-+.+
T Consensus 22 ~~L~~~~~~L~~k~~e 37 (344)
T PF12777_consen 22 EELEEKQPELEEKQKE 37 (344)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 422
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.42 E-value=22 Score=29.79 Aligned_cols=64 Identities=11% Similarity=0.443 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDM----------------------------GSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV----------------------------~~LK~DV~~LK~DV~~LK~ 53 (150)
+|+.+++.+.+|+.=-.+|.+||+.+.+++..+ ...|.+...|++-+..|+.
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~ 94 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEA 94 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHH
Confidence 455555555555555555555555554444333 2333344444555566666
Q ss_pred HHHHhhhhcCCC
Q psy9603 54 DMASIKEDIGGY 65 (150)
Q Consensus 54 Dvs~lK~DigGy 65 (150)
+++.|++.....
T Consensus 95 El~~Lr~~l~~~ 106 (202)
T PF06818_consen 95 ELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHhh
Confidence 777777666554
No 423
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=74.26 E-value=15 Score=32.76 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy9603 38 KEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 38 K~DV~~LK~DV~~LK~Dvs~l 58 (150)
+.++..|.+++..++.....+
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~~ 343 (432)
T smart00498 323 KEKYDKLQKDLSDLKTRFEKL 343 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555554444443
No 424
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=74.25 E-value=24 Score=33.76 Aligned_cols=49 Identities=12% Similarity=0.322 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
.||.+...++.-|.+|...|..||+.-.....-|..|...++.||+-+.
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555555555555555555555555555555555555555444
No 425
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=74.24 E-value=15 Score=24.98 Aligned_cols=19 Identities=11% Similarity=0.522 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIK 24 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK 24 (150)
.++|++.+.+++.++..|+
T Consensus 11 ~~eL~~~l~~lkkeL~~lR 29 (66)
T PRK00306 11 VEELNEKLLELKKELFNLR 29 (66)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655
No 426
>PF14282 FlxA: FlxA-like protein
Probab=74.14 E-value=22 Score=26.20 Aligned_cols=51 Identities=6% Similarity=0.334 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKV----DMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~----DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
...|+.|+.-|..|.+.|.+|+. |-..-++-+..|..-|..|..-|+.+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666665 3344455555556666666665555543
No 427
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=74.03 E-value=21 Score=29.19 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMG 49 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~ 49 (150)
|++++..|++.+..|...+..|+.+...+.+|-.+|..-|.
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~ 149 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMN 149 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555553
No 428
>PRK11546 zraP zinc resistance protein; Provisional
Probab=74.00 E-value=39 Score=26.88 Aligned_cols=56 Identities=5% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSI-------KEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L-------K~DV~~LK~DV~~LK~Dvs~lK 59 (150)
|....++.=..+...++..|++++-.-+.+++.| .+.|..|.++|+.|+..+.+..
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
No 429
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=73.96 E-value=17 Score=30.42 Aligned_cols=12 Identities=17% Similarity=0.648 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMA 14 (150)
Q Consensus 3 k~Di~~Lk~dv~ 14 (150)
|++++++.+++.
T Consensus 53 kNeLREVREELk 64 (205)
T PF15079_consen 53 KNELREVREELK 64 (205)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 430
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=73.88 E-value=19 Score=29.93 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDM 27 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV 27 (150)
+.+++.+|..|...|..|...+
T Consensus 107 L~s~~~ei~~L~~kI~~L~~~i 128 (181)
T PF04645_consen 107 LKSIKKEIEILRLKISSLQKEI 128 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444443
No 431
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=73.88 E-value=10 Score=33.03 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9603 33 DMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 33 DV~~LK~DV~~LK~DV~~LK~ 53 (150)
....|+.+....|+|+..++.
T Consensus 217 ~~~~l~~el~~aK~~~~~~~~ 237 (264)
T PF07246_consen 217 ESKWLEHELSDAKEDMIRLRN 237 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333
No 432
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=73.74 E-value=16 Score=28.77 Aligned_cols=45 Identities=7% Similarity=0.389 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGS------------IKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~------------LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
....+..+|+.++.+||++++. |.+.++.+++|+..+++..+.-+
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555443 44445555555555555544443
No 433
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=73.65 E-value=20 Score=35.29 Aligned_cols=29 Identities=10% Similarity=0.373 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 30 IKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 30 LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+|.+|..||+++....+.-..|..||..|
T Consensus 320 ~r~hi~~lkesl~~ke~~~~~Lqsdve~L 348 (775)
T PF10174_consen 320 MRQHIEVLKESLRAKEQEAEMLQSDVEAL 348 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444444444444444444444444433
No 434
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.64 E-value=26 Score=29.38 Aligned_cols=33 Identities=15% Similarity=0.491 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 26 DMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 26 DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
.+...|.++..|++.+..|.+++..|++..+.+
T Consensus 74 ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 74 ELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 334555666667677777777777776666665
No 435
>KOG0994|consensus
Probab=73.57 E-value=11 Score=39.55 Aligned_cols=61 Identities=15% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 3 KEDMGSIKEDMASIKEDM---VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv---~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
.+++..++++|.++|.=+ +.-++||++|-.-+.+||..|..+.+++..+.++++.+-+.+.
T Consensus 1200 ~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~ 1263 (1758)
T KOG0994|consen 1200 ASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLP 1263 (1758)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccc
No 436
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=73.49 E-value=32 Score=29.20 Aligned_cols=20 Identities=0% Similarity=-0.095 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy9603 41 MGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 41 V~~LK~DV~~LK~Dvs~lK~ 60 (150)
....+.++..++...+.+++
T Consensus 161 ~~~a~~~l~~a~~~~~~~~~ 180 (346)
T PRK10476 161 QRDAEVSLNQALLQAQAAAA 180 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444433
No 437
>PRK14148 heat shock protein GrpE; Provisional
Probab=73.43 E-value=22 Score=29.35 Aligned_cols=36 Identities=17% Similarity=0.393 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
.+++.|++.+..|++.+..+|....-++.|...+|.
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rK 75 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRK 75 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444444444443
No 438
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=73.32 E-value=21 Score=27.67 Aligned_cols=51 Identities=14% Similarity=0.361 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
++|=+.|..|.+-|.++-++++.||+-+.+|=+.-..|.-+..-|++.++.
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 455666777777777777777777777777777666666666666665554
No 439
>KOG0964|consensus
Probab=73.31 E-value=19 Score=36.94 Aligned_cols=47 Identities=15% Similarity=0.463 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
+..+..+|..+-+.|..+-.+|..+..|...++.++..|++.+..+|
T Consensus 687 L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k 733 (1200)
T KOG0964|consen 687 LDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIK 733 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444444444444444443333
No 440
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=73.22 E-value=21 Score=27.18 Aligned_cols=61 Identities=10% Similarity=0.370 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKED--MGSIKDDMGSIKEDMASIKEDIGGYGV 67 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~D--V~~LK~DV~~LK~Dvs~lK~DigGyg~ 67 (150)
+.|.-.|..+-.++..++.++.++.+.+..++.. +..+++.+..+.+.+..+-+.|-..|+
T Consensus 9 ~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~Gv 71 (120)
T PF09969_consen 9 NALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEELGV 71 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4455556666667777777777777777776663 345555555555555555555544443
No 441
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=73.10 E-value=33 Score=26.39 Aligned_cols=43 Identities=5% Similarity=0.170 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 19 DMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 19 Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
-+..|++++..+........+-+.+|+..+..+...+.....+
T Consensus 42 ~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 42 QLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334555444444444444444445555555554444444333
No 442
>KOG4196|consensus
Probab=73.07 E-value=14 Score=29.35 Aligned_cols=38 Identities=11% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~L 44 (150)
.+|+.+=.+|.++|..||++++.|+.+...+|.--..|
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 443
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=73.03 E-value=23 Score=32.24 Aligned_cols=61 Identities=3% Similarity=0.202 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKE-------------------------DMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~-------------------------DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
++..|+.|+.+++.+.+.+..++. ++++|++=...+.+.+.+|.+.+..+...+.
T Consensus 76 l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
T TIGR02231 76 LRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIR 155 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhc
Q psy9603 57 SIKEDI 62 (150)
Q Consensus 57 ~lK~Di 62 (150)
+++..+
T Consensus 156 ~~~~~l 161 (525)
T TIGR02231 156 ELEKQL 161 (525)
T ss_pred HHHHHH
No 444
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=72.99 E-value=29 Score=30.25 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 5 DMGSIKEDMASIKEDM-VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv-~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+|..++..++.|++.+ .+++.=...++.++..++...++|+..+..+++++..+..
T Consensus 283 ~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~ 339 (444)
T TIGR03017 283 QYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNR 339 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 445
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=72.88 E-value=21 Score=26.33 Aligned_cols=42 Identities=7% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 10 KEDMASIK--------EDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 10 k~dv~~LK--------~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
...|+.|| ..|..|..++..|+.+|..|+..+.....+...|
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 446
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=72.86 E-value=21 Score=27.32 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
..|...|.+-++.|..||+.+.+-|..+..-+.++.+|-.+-...|+=+..|.+
T Consensus 75 ~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~ 128 (142)
T PF04048_consen 75 SQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQ 128 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
No 447
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.79 E-value=21 Score=36.85 Aligned_cols=58 Identities=3% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.++...+.++..++.++..+..++.....++..+++++.+|++....++..+..|++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~ 326 (1353)
T TIGR02680 269 TRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGS 326 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 448
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=72.63 E-value=29 Score=26.75 Aligned_cols=53 Identities=25% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhc
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM-GSIKEDMASIKEDI 62 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV-~~LK~Dvs~lK~Di 62 (150)
..+|+....+.+.+..+.+|+..++. .++++.+++=.|+ ..||+-|+.+|+|+
T Consensus 35 ~~~K~~~~~~~~~ae~~~~~~~~~a~---~~s~~~a~~~~~~~~~ik~~v~~~~e~~ 88 (115)
T COG4980 35 KKLKKSGDALFELAEDKGTDILMIAD---KLSKESAETLKDQGGEIKESVKKWKEDI 88 (115)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH---HHhHHHHHHHHHhhHHHHHHHHHhHhhc
No 449
>PHA03395 p10 fibrous body protein; Provisional
Probab=72.45 E-value=35 Score=25.27 Aligned_cols=60 Identities=13% Similarity=0.356 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 1 MIKEDMGSIKEDMASIKEDMVSIKEDMASIK---VDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 1 ~ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK---~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
|--+=+-.|.+||+.+.+-|..|.+-|..++ .||++|.+-+..+-+-+..+-+-|+.+-+
T Consensus 1 msqNILl~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~d 63 (87)
T PHA03395 1 MSQNILLLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITD 63 (87)
T ss_pred CCchHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 450
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=72.40 E-value=6.6 Score=31.86 Aligned_cols=51 Identities=10% Similarity=0.403 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
|+.-++.--|.-+-|.++| .+-..|+..+..||.++..||+++ ++++....
T Consensus 5 ~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 5 FESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHCH-----------------------
T ss_pred HHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
No 451
>KOG0921|consensus
Probab=72.32 E-value=11 Score=38.51 Aligned_cols=66 Identities=24% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy9603 63 GGYGVDKRGYGVDKRGYGVDKRGYGVDKSGYGVDKSGYGVDKRGYGVDKRGYGVDKRGYGVDKRGYG 129 (150)
Q Consensus 63 gGyg~~~~gYg~p~~gYg~~~~GYg~~~~gYg~p~~gYg~p~~gYg~p~~gYg~p~~gyg~~~~gyg 129 (150)
+|||-.-.++|--..|||.+..+|++--+.+.-- +.+|++.+||.---+||.--|+|+.--.+|++
T Consensus 1192 GGYGggys~gGygsGGYGgsa~~~~~~~Gagvg~-GyrGvsrgGfrnnggGdyrnpgggyrgsGGfg 1257 (1282)
T KOG0921|consen 1192 GGYGGGYSGGGYGSGGYGGSAPSARANYGAGVGN-GYRGVSRGGFRNNGGGDYRNPGGGYRGSGGFG 1257 (1282)
T ss_pred CCcCCCCCCCCcCCCCCCCCCCCCCCCccccccC-CCccccCCccccCCCCCCCCCCCCccCCCCcC
No 452
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=72.24 E-value=25 Score=29.02 Aligned_cols=55 Identities=7% Similarity=0.311 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSI--KEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~L--K~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
+...|+.++...+.|.+=+..- -+||-++.+.++.++.++..++..+..|.+.|+
T Consensus 137 ~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 137 LEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 453
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=72.19 E-value=38 Score=28.53 Aligned_cols=57 Identities=11% Similarity=0.275 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+......++.++..++.|+..++..+..|..-+..+++.++.+-+++..+=+.++.+
T Consensus 235 ~~i~~A~~~~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 291 (306)
T PF04888_consen 235 IQIASADLQKEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQI 291 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 454
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=72.12 E-value=46 Score=27.95 Aligned_cols=70 Identities=13% Similarity=0.414 Sum_probs=0.0
Q ss_pred hHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCCC
Q psy9603 2 IKEDMGSIKE-DMASIKEDMVS-IKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVDKRG 71 (150)
Q Consensus 2 ik~Di~~Lk~-dv~~LK~Dv~~-LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~~~g 71 (150)
|.+.|.+.+. +..++++-+.. +.+.+..+.++++.|+..+.++.+++..+..++..--+-..+=|.+..|
T Consensus 110 I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~G 181 (301)
T PF14362_consen 110 IDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKG 181 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
No 455
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=72.09 E-value=20 Score=30.48 Aligned_cols=51 Identities=18% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.++.++..+.+..+..|+|=.+++++|..+.+.|.+..++ ||.||.--+..
T Consensus 160 ~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~---~k~e~~Rf~~~ 210 (243)
T cd07666 160 QIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNA---LKADWERWKQN 210 (243)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 456
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=72.08 E-value=10 Score=33.69 Aligned_cols=38 Identities=8% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGS 43 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~ 43 (150)
|+.|+..+.+-|+-|.+|+.++++|++.|..+++.+..
T Consensus 140 f~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~ 177 (308)
T PF06717_consen 140 FNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDR 177 (308)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
No 457
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=72.05 E-value=41 Score=27.50 Aligned_cols=57 Identities=11% Similarity=0.383 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKED-MASI-KVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~D-V~~L-K~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
|+.=++.|+.++..++...+.+-++ |.+| |++.+.|..-+.++.+....|..-|.+|
T Consensus 46 itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el 104 (165)
T PF09602_consen 46 ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQEL 104 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 458
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=72.02 E-value=9 Score=24.72 Aligned_cols=24 Identities=17% Similarity=0.591 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
Q psy9603 18 EDMVSIKEDM-ASIKVDMGSIKEDM 41 (150)
Q Consensus 18 ~Dv~~LK~DV-~~LK~DV~~LK~DV 41 (150)
.|+..||++| .+++.++..+|+++
T Consensus 3 ~dle~~KqEIL~EvrkEl~K~K~EI 27 (40)
T PF08776_consen 3 SDLERLKQEILEEVRKELQKVKEEI 27 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
No 459
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=72.01 E-value=24 Score=26.45 Aligned_cols=45 Identities=4% Similarity=0.325 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
+.+=++.|+..++.|..-+..|+.++..++..++.+..-+.+|..
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 460
>PRK13694 hypothetical protein; Provisional
Probab=71.97 E-value=17 Score=26.82 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
...|+.+-+.|..|.++...|.+||..+-.+-..-==|+..|++=|..-|.|-.+..+
T Consensus 11 ~~~Lr~fIERIERLEeEkk~i~~dikdVyaEAK~~GfD~K~~r~ii~lRK~d~~er~E 68 (83)
T PRK13694 11 KEQLRAFIERIERLEEEKKTISDDIKDVYAEAKGNGFDVKALKTIIRLRKKDDDERAE 68 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCHhHHHH
No 461
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=71.95 E-value=6.6 Score=28.77 Aligned_cols=41 Identities=7% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKV---DMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~---DV~~LK~DV~~LK~DV~~LK~ 53 (150)
|+++++.+.++++++...+. .+..+++++.++++....++.
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 44 (144)
T PF04350_consen 1 LKTLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLK 44 (144)
T ss_dssp -----------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 462
>PF12296 HsbA: Hydrophobic surface binding protein A; InterPro: IPR021054 Hydrophobic surface binding proteins are typically between 171 to 275 amino acids in length. Although the HsbA amino acid sequence suggests that HsbA may be hydrophilic, HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) surfaces in the presence of NaCl or CaCl2. When HsbA was adsorbed on the hydrophobic PBSA surfaces, it promoted PBSA degradation via the CutL1 polyesterase. CutL1 interacts directly with HsbA attached to the hydrophobic QCM electrode surface. These results suggest that when HsbA is adsorbed onto the PBSA surface, it recruits CutL1, and that when CutL1 is accumulated on the PBSA surface, it stimulates PBSA degradation []. This entry is also characterised by a antigenic cell wall galactomannoprotein in Aspergillus fumigatus, which is a protein of 284 amino acid residues. It contains a serine- and threonine-rich region for O glycosylation, a signal peptide, and a putative glycosylphosphatidyl inositol attachment signal sequence. Ultrastructural analysis showed that the protein is present in the cell walls of hyphae and conidia []. ; PDB: 3L1N_A.
Probab=71.91 E-value=18 Score=26.08 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhcCC
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDM---GSIKDDMGSIKEDMASIKEDIGG 64 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV---~~LK~DV~~LK~Dvs~lK~DigG 64 (150)
|++.++.+|+.+.++|..|.+.|......+ ..|..+...|...+..-..++..
T Consensus 2 d~~~v~~~i~~I~~~v~~l~~~i~~~~gg~~~~~~i~~~~~~l~~~i~~~~~~~~~ 57 (124)
T PF12296_consen 2 DAATVISDINNISTAVTKLDTAIKAYNGGDLGALPILSASDALVSAIKQATTDVQA 57 (124)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH--SS----HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHc
No 463
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=71.90 E-value=33 Score=25.22 Aligned_cols=59 Identities=10% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKE----DMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~----DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
.+++.+.+.+..|+.||...+.-|..|..--..|.+ +...+++-+..|...-..|...+
T Consensus 33 ~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~ 95 (213)
T cd00176 33 ESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELA 95 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
No 464
>KOG0979|consensus
Probab=71.88 E-value=24 Score=36.05 Aligned_cols=65 Identities=15% Similarity=0.351 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKED-MGSIKDDMGSIKEDMASIKEDIGGYG 66 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~D-V~~LK~DV~~LK~Dvs~lK~DigGyg 66 (150)
+-+..+..++||.+|++++..+++|++.+|..+..+|++ +..|++-|..|-+.-+.+=+.+++=|
T Consensus 861 ~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~mg~aG 926 (1072)
T KOG0979|consen 861 AVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSSMGCAG 926 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
No 465
>PRK09343 prefoldin subunit beta; Provisional
Probab=71.87 E-value=20 Score=27.07 Aligned_cols=48 Identities=10% Similarity=0.278 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 1 MIKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 1 ~ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
+|++|..+++++|..=.+-+. .+|..|..-...|++.+.++.+.+..|
T Consensus 64 lv~qd~~e~~~~l~~r~E~ie---~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 64 LVKVDKTKVEKELKERKELLE---LRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HhhccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.84 E-value=31 Score=24.03 Aligned_cols=59 Identities=8% Similarity=0.312 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+++++..+...++........|..+=...-.=+...-.++..||+++..|+.+......
T Consensus 10 Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 10 LRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 467
>KOG1853|consensus
Probab=71.76 E-value=29 Score=30.87 Aligned_cols=60 Identities=3% Similarity=0.170 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 1 MIKEDMGSIKEDMASIKEDMVSIKEDMASIK-----------VDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 1 ~ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK-----------~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
||...|..|+.....|.+++..|+.++..+| +-++.|..|.+.++.--..|.+-|.+|.+
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=71.76 E-value=24 Score=34.34 Aligned_cols=60 Identities=12% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
++=+...+.++..|-+++...+.++.+.+..+..+++++.++++.....++++..-|..+
T Consensus 503 ~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 503 KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>PRK11546 zraP zinc resistance protein; Provisional
Probab=71.69 E-value=49 Score=26.31 Aligned_cols=66 Identities=15% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhcC-----CCCccCCC
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK-------VDMGSIKEDMGSIKDDMGSIKE--DMASIKEDIG-----GYGVDKRG 71 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK-------~DV~~LK~DV~~LK~DV~~LK~--Dvs~lK~Dig-----Gyg~~~~g 71 (150)
.+....++..|++++..-++++..|= +-|..|..+|+.|++.+.++.. |+.--|.-|+ ||+--..|
T Consensus 56 ~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k~Gv~~g~~~g~~g~~gg 135 (143)
T PRK11546 56 HNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAEAGIPRGAGMGYGGCGGG 135 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCcCCCCCC
No 470
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=71.62 E-value=24 Score=28.87 Aligned_cols=48 Identities=15% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
++| |++.+..|+..+..|...+..|+.+.+.+.+|...|..-|...+.
T Consensus 106 ~~v--~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark 153 (170)
T PRK13923 106 EDV--LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARR 153 (170)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=71.59 E-value=29 Score=34.41 Aligned_cols=74 Identities=20% Similarity=0.452 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHH-----------HHHHHHHHHHHHH----------HHHHHHHHHHHHHH----------------HH
Q psy9603 2 IKEDMGSIKEDMAS-----------IKEDMVSIKEDMA----------SIKVDMGSIKEDMG----------------SI 44 (150)
Q Consensus 2 ik~Di~~Lk~dv~~-----------LK~Dv~~LK~DV~----------~LK~DV~~LK~DV~----------------~L 44 (150)
+++-+.-|+++++. |++-+..||+++. +||.=+..||+-+. +|
T Consensus 484 Lk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei 563 (762)
T PLN03229 484 LQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEI 563 (762)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHH
Q ss_pred HHHHHH------HHHHHHHhhhhcCCCCccCCCCCCCC
Q psy9603 45 KDDMGS------IKEDMASIKEDIGGYGVDKRGYGVDK 76 (150)
Q Consensus 45 K~DV~~------LK~Dvs~lK~DigGyg~~~~gYg~p~ 76 (150)
|+.+.. +|+.|..+|..|---|..... ..++
T Consensus 564 ~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~-~~~~ 600 (762)
T PLN03229 564 NKKFKEVMDRPEIKEKMEALKAEVASSGASSGD-ELDD 600 (762)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcCccccC-CCCH
No 472
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=71.53 E-value=20 Score=30.82 Aligned_cols=59 Identities=10% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 3 KEDMGSIKEDMAS-IKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 3 k~Di~~Lk~dv~~-LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
++.++.|+..+.+ -+..+...+.+...+++-+..|.+|..+.++-+...++-++..|+.
T Consensus 30 ~~ei~~L~~~i~~~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~ 89 (298)
T PF11262_consen 30 DEEIERLEKEISQMSRATISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDS 89 (298)
T ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 473
>KOG0972|consensus
Probab=71.52 E-value=23 Score=32.11 Aligned_cols=61 Identities=13% Similarity=0.341 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhhhc
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM-------------GSIKEDMASIKEDI 62 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV-------------~~LK~Dvs~lK~Di 62 (150)
+-+..+.+...+++|++--.++..+|++--...+++-.|+..+|+.| ..||.-|+.||++.
T Consensus 278 l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et 351 (384)
T KOG0972|consen 278 LMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEET 351 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHH
No 474
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=71.49 E-value=18 Score=30.07 Aligned_cols=48 Identities=15% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGS-----IKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~-----LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
+++.++++|..|...|..|...++. +++++..||-....++..-+..+
T Consensus 106 eL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~e 158 (181)
T PF04645_consen 106 ELKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIRE 158 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
No 475
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.32 E-value=27 Score=29.70 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
+-.|++.+.+.++..++|-..++++|.++...|...-++ ||.||.-.+.....
T Consensus 161 ~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~---~k~e~~Rf~~~k~~ 213 (243)
T cd07666 161 IQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNA---LKADWERWKQNMQT 213 (243)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
No 476
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=71.28 E-value=17 Score=34.81 Aligned_cols=64 Identities=13% Similarity=0.293 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGY 65 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGy 65 (150)
|.+-|+.|.+.-.+|+.|.+.+..=|..||+-+..--.-+..||.++..-.+.+..|++.+.++
T Consensus 293 ~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L 356 (622)
T COG5185 293 ISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDEL 356 (622)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHH
No 477
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=71.28 E-value=22 Score=33.60 Aligned_cols=59 Identities=10% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 2 IKEDMGSIKEDMAS-IKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 2 ik~Di~~Lk~dv~~-LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
++..|+.|+..++. ++.-+..++.++..++...+.|+..++++++.+..+-....++.+
T Consensus 321 l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~ 380 (754)
T TIGR01005 321 AKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDA 380 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHH
No 478
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=71.16 E-value=20 Score=32.03 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
....+.+....++..+..|+..+..|+.....+++++..+|+++..+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 16 TERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 479
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=71.13 E-value=18 Score=34.66 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
..||++.+.+++-|..|.+.|..||.+-...-..|.+|...+..||..+..
T Consensus 18 ~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 18 QQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 480
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=71.12 E-value=36 Score=28.09 Aligned_cols=62 Identities=10% Similarity=0.314 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhhc
Q psy9603 1 MIKEDMGSIKEDMASIKED-MVSIKEDMASIKVDMGSIKEDMGSIKDDM--------GSIKEDMASIKEDI 62 (150)
Q Consensus 1 ~ik~Di~~Lk~dv~~LK~D-v~~LK~DV~~LK~DV~~LK~DV~~LK~DV--------~~LK~Dvs~lK~Di 62 (150)
++.+.|..|.+.|...-.+ ..+++.-+..|-.++..|...|.+.+.+. ..|..+|..+++.+
T Consensus 67 ~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~ 137 (247)
T PF06705_consen 67 KFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAF 137 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
No 481
>KOG2991|consensus
Probab=71.07 E-value=24 Score=31.37 Aligned_cols=63 Identities=13% Similarity=0.343 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 1 MIKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 1 ~ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
|-|.--++||.--.+|-.=|.+|-+||..|.+-|-.|.+...+-+..|..||.....+++-|+
T Consensus 247 mQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~ 309 (330)
T KOG2991|consen 247 MQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVG 309 (330)
T ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 482
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=71.05 E-value=37 Score=24.65 Aligned_cols=58 Identities=14% Similarity=0.370 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMA----------------------------SIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~----------------------------~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
++.-+..++..-..|+..-..|+.++. +...+|..|+.+++.|+.++..+.+
T Consensus 23 ~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 23 IERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhh
Q psy9603 54 DMASIK 59 (150)
Q Consensus 54 Dvs~lK 59 (150)
.|..++
T Consensus 103 ~l~~~~ 108 (126)
T PF13863_consen 103 KLEEYK 108 (126)
T ss_pred HHHHHH
No 483
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=71.04 E-value=29 Score=30.92 Aligned_cols=58 Identities=10% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMAS-----IKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~-----LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
+..+-+.+..++.+..++-+++-. -+.||.++-+-+.+||..|..||..+.+++..++
T Consensus 258 ~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~~~ 320 (320)
T TIGR01834 258 HGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEANPG 320 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
No 484
>COG1422 Predicted membrane protein [Function unknown]
Probab=71.02 E-value=24 Score=29.66 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKV--DMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~--DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
.++|+++|..+.++++.+.+.+. |...||+ +.+.+.++.....++..+
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkk-Lq~~qmem~~~Q~elmk~ 120 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESGDMKKLKK-LQEKQMEMMDDQRELMKM 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHHHHHH
No 485
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=70.83 E-value=26 Score=33.83 Aligned_cols=54 Identities=4% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
..|+.+|+.|+.+|..++++|..+..+|+.-..-+....+++...+..-.-|+.
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~A 135 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEA 135 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=70.80 E-value=12 Score=32.27 Aligned_cols=40 Identities=3% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
|..++..+..|++.+..++.+...++.++..+++.+..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 1 ISELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 487
>PRK14154 heat shock protein GrpE; Provisional
Probab=70.77 E-value=22 Score=29.81 Aligned_cols=45 Identities=9% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGS 50 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~ 50 (150)
+..|+++++.++..+.+++....-++.|...+|.-+..-++++..
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~ 98 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIK 98 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=70.72 E-value=12 Score=27.78 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
+-+..+-+-+.++++.|.+++.+|..|++.+.---.+-..|+.-|+.
T Consensus 1 ~~i~l~~~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~v~~ 47 (116)
T PF10552_consen 1 QQIKLLMQATEEHNEKIEEVENRVDDLEENMPIDPGQQKEIQKAVKS 47 (116)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
No 489
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=70.66 E-value=11 Score=31.63 Aligned_cols=43 Identities=16% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGS 50 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~ 50 (150)
+..|++.|--||.+++. ..|..||.....|+.||+.|=.+|..
T Consensus 146 L~~~~D~vL~LKHNLNA--~AI~sL~~e~~~~~~di~~Li~~m~~ 188 (201)
T PF11172_consen 146 LAAFRDQVLYLKHNLNA--QAIASLQGEFSSIESDISQLIKEMER 188 (201)
T ss_pred HHHHHHHHHHHhccccH--HHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=70.63 E-value=31 Score=24.41 Aligned_cols=58 Identities=12% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMAS---IKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~---LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
|.+.+...+..||.-+...|+=|.+ +-..+++-...|.+|++.+...++=++.+|+-+
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 491
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=70.53 E-value=30 Score=29.71 Aligned_cols=54 Identities=7% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHhhh
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGS----IKEDMGSIKDDM---GSIKEDMASIKE 60 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~----LK~DV~~LK~DV---~~LK~Dvs~lK~ 60 (150)
+.|.+-+..|++.+..++.-|.++..+... |++.+..|++-- ..|.+++..|.+
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~ 62 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTS 62 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
No 492
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=70.51 E-value=32 Score=27.30 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Q psy9603 4 EDMGSIKEDMASIKEDM---------VSIKEDMASIKVDMGSI-----KEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv---------~~LK~DV~~LK~DV~~L-----K~DV~~LK~DV~~LK~Dvs~l 58 (150)
++|...++.+.+||.-| +.|..=+++|+.||..| ++|-.++++=-..|++++..|
T Consensus 43 ~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~L 111 (142)
T TIGR03042 43 EGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKL 111 (142)
T ss_pred HHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHH
No 493
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=70.45 E-value=37 Score=24.35 Aligned_cols=59 Identities=14% Similarity=0.310 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+.+=|+.|+.+...+.++++.+|.-=.++...|+.==.+|..+++-|..|..--..+|+
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~ 60 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>KOG0994|consensus
Probab=70.41 E-value=21 Score=37.52 Aligned_cols=58 Identities=17% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMG--------------SIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~--------------~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
++||+.|-+.+.+|+..|..+.+++.++.++++ .|.+++..|-+-+..|++....||+
T Consensus 1224 ~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1224 AEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 495
>KOG0627|consensus
Probab=70.40 E-value=12 Score=31.74 Aligned_cols=61 Identities=8% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGG 64 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigG 64 (150)
.++..+...+..++.....+++.+..|+.+.+.|..++.+|++.-..++..+..+++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~~~~~~~~~~~ 180 (304)
T KOG0627|consen 120 KSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRATIQTSKRVVKS 180 (304)
T ss_pred chhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccCc
No 496
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=70.27 E-value=24 Score=36.42 Aligned_cols=60 Identities=7% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhhhc
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK--------EDMASIKEDI 62 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK--------~Dvs~lK~Di 62 (150)
+.++..+++++..+.+++....+++..+++++..|++...+|++.+..|+ ++...+++.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql 342 (1353)
T TIGR02680 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADA 342 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
No 497
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=70.22 E-value=28 Score=24.09 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIK-----EDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK-----~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.++|++.+.++|.+.-.|+-.-+.-. ..+..+|.||+-|++-+++-+.+
T Consensus 14 ~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ek~~~ 67 (69)
T PRK14549 14 PEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQREKKRE 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHHHHHhc
No 498
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=69.98 E-value=33 Score=23.96 Aligned_cols=51 Identities=6% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
++..|.+-|..|=.=...||.+-..|+..+..+.++=+.|++.+..-.+.|
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>KOG4657|consensus
Probab=69.98 E-value=33 Score=29.75 Aligned_cols=62 Identities=15% Similarity=0.309 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
+++|+.+-++++....+=+.+=+.--..+.+||..+++....|..-...+|+.+...|.-|+
T Consensus 63 l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs 124 (246)
T KOG4657|consen 63 LKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIIS 124 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
No 500
>KOG0652|consensus
Probab=69.87 E-value=13 Score=33.57 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
|-+-++.-..++++-..-|-.+|..||++|..++-++..+|+.+.++++.|
T Consensus 14 ~~e~~~mste~i~~rtrlldnEirI~~sev~ri~he~~~~~ekIkeN~EkI 64 (424)
T KOG0652|consen 14 DQEILSMSTEEIISRTRLLDNEIRIMKSEVQRINHELQAMKEKIKENTEKI 64 (424)
T ss_pred hhhhhhccHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHhhHHHh
Done!