Query psy9603
Match_columns 150
No_of_seqs 146 out of 187
Neff 3.9
Searched_HMMs 29240
Date Sat Aug 17 00:02:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qih_A Protein USPA1; trimeric 97.7 0.00024 8E-09 55.7 9.1 59 4-62 33-91 (157)
2 2qih_A Protein USPA1; trimeric 97.5 0.00047 1.6E-08 54.0 9.1 62 2-63 38-99 (157)
3 1jcd_A Major outer membrane li 97.4 0.00049 1.7E-08 45.3 6.1 36 12-47 5-40 (52)
4 3htk_A Structural maintenance 97.2 0.0027 9.3E-08 41.0 8.6 56 3-58 4-59 (60)
5 1jcd_A Major outer membrane li 97.2 0.00091 3.1E-08 44.0 6.1 35 20-54 6-40 (52)
6 4dzn_A Coiled-coil peptide CC- 97.0 0.0011 3.8E-08 39.6 4.5 26 27-52 4-29 (33)
7 1c1g_A Tropomyosin; contractIl 96.9 0.0063 2.2E-07 45.2 9.2 53 2-54 4-56 (284)
8 2z73_A Rhodopsin; visual pigme 96.9 0.00014 4.9E-09 59.4 0.0 11 69-79 390-400 (448)
9 1c1g_A Tropomyosin; contractIl 96.8 0.0056 1.9E-07 45.5 7.9 45 3-47 12-56 (284)
10 3hnw_A Uncharacterized protein 96.7 0.011 3.7E-07 45.0 9.4 53 5-57 76-128 (138)
11 3hnw_A Uncharacterized protein 96.7 0.012 4.2E-07 44.7 9.2 59 4-62 68-126 (138)
12 3htk_A Structural maintenance 96.6 0.01 3.5E-07 38.2 7.3 55 9-63 3-57 (60)
13 3v86_A De novo design helix; c 96.5 0.0036 1.2E-07 36.0 4.0 22 37-58 5-26 (27)
14 3oja_B Anopheles plasmodium-re 96.2 0.028 9.7E-07 48.6 9.6 51 13-63 532-582 (597)
15 3na7_A HP0958; flagellar bioge 96.1 0.026 8.8E-07 45.6 8.7 45 9-53 30-74 (256)
16 3na7_A HP0958; flagellar bioge 96.1 0.035 1.2E-06 44.8 9.3 55 6-60 20-74 (256)
17 2jee_A YIIU; FTSZ, septum, coi 96.1 0.046 1.6E-06 38.8 8.8 38 6-43 8-45 (81)
18 3tq2_A KE1; parallel three hel 96.1 0.013 4.5E-07 35.5 5.0 32 28-59 4-35 (36)
19 3oja_B Anopheles plasmodium-re 95.9 0.036 1.2E-06 47.9 9.2 46 17-62 529-574 (597)
20 1avy_A Fibritin, gpwac M; bact 95.6 0.016 5.3E-07 40.7 4.6 20 25-44 15-34 (74)
21 2jee_A YIIU; FTSZ, septum, coi 95.6 0.11 3.6E-06 36.9 8.9 53 6-58 22-74 (81)
22 1ic2_A Tropomyosin alpha chain 95.4 0.071 2.4E-06 36.6 7.4 46 12-57 21-66 (81)
23 1wle_A Seryl-tRNA synthetase; 95.3 0.081 2.8E-06 47.4 9.2 55 7-61 80-145 (501)
24 3he4_A Synzip6; heterodimeric 95.3 0.045 1.5E-06 35.9 5.6 30 26-55 25-54 (56)
25 1avy_A Fibritin, gpwac M; bact 95.2 0.044 1.5E-06 38.3 5.7 34 12-45 9-42 (74)
26 4etp_A Kinesin-like protein KA 95.2 0.051 1.8E-06 47.1 7.4 63 4-66 3-65 (403)
27 4h22_A Leucine-rich repeat fli 95.2 0.12 4.2E-06 38.1 8.3 50 6-55 32-81 (103)
28 3qne_A Seryl-tRNA synthetase, 95.1 0.074 2.5E-06 47.7 8.3 57 6-62 42-101 (485)
29 1wle_A Seryl-tRNA synthetase; 95.0 0.13 4.5E-06 46.0 9.6 67 2-68 82-159 (501)
30 3tq2_A KE1; parallel three hel 94.9 0.048 1.6E-06 33.1 4.5 31 15-45 5-35 (36)
31 2nrj_A HBL B protein; enteroto 94.9 0.088 3E-06 44.8 7.9 61 3-63 122-193 (346)
32 3he4_A Synzip6; heterodimeric 94.9 0.0089 3E-07 39.3 1.3 33 9-41 22-54 (56)
33 2v66_B Nuclear distribution pr 94.8 0.2 7E-06 37.2 8.8 53 6-58 5-61 (111)
34 2dq0_A Seryl-tRNA synthetase; 94.8 0.088 3E-06 46.3 7.9 57 6-62 40-99 (455)
35 1t2k_D Cyclic-AMP-dependent tr 94.7 0.11 3.8E-06 33.8 6.4 33 13-45 24-56 (61)
36 2v71_A Nuclear distribution pr 94.6 0.22 7.5E-06 39.9 9.2 53 4-56 49-112 (189)
37 1ez3_A Syntaxin-1A; three heli 94.5 0.18 6.2E-06 35.8 7.6 27 5-31 6-32 (127)
38 3qne_A Seryl-tRNA synthetase, 94.4 0.094 3.2E-06 47.0 7.3 64 2-65 45-111 (485)
39 3u1c_A Tropomyosin alpha-1 cha 94.2 0.35 1.2E-05 34.6 8.7 28 30-57 42-69 (101)
40 4h22_A Leucine-rich repeat fli 94.2 0.42 1.4E-05 35.2 9.2 59 4-62 23-81 (103)
41 1ic2_A Tropomyosin alpha chain 94.2 0.41 1.4E-05 32.7 8.6 55 7-61 2-56 (81)
42 2dq0_A Seryl-tRNA synthetase; 94.1 0.14 4.8E-06 45.1 7.6 67 2-68 43-112 (455)
43 2wt7_B Transcription factor MA 94.1 0.39 1.3E-05 34.5 8.6 56 3-58 20-88 (90)
44 1ci6_A Transcription factor AT 94.0 0.2 6.7E-06 33.2 6.5 34 6-39 25-58 (63)
45 3u59_A Tropomyosin beta chain; 94.0 0.41 1.4E-05 34.0 8.7 22 32-53 44-65 (101)
46 3f6n_A Virion-associated prote 94.0 0.098 3.3E-06 39.9 5.6 31 6-36 4-34 (129)
47 3swk_A Vimentin; cytoskeleton, 94.0 0.39 1.3E-05 33.6 8.3 29 32-60 49-84 (86)
48 3swk_A Vimentin; cytoskeleton, 93.9 0.5 1.7E-05 33.0 8.8 34 6-39 2-35 (86)
49 3ol1_A Vimentin; structural ge 93.9 0.53 1.8E-05 34.5 9.4 8 33-40 70-77 (119)
50 2v71_A Nuclear distribution pr 93.9 0.41 1.4E-05 38.4 9.3 22 20-41 58-79 (189)
51 2xdj_A Uncharacterized protein 93.8 0.63 2.2E-05 32.7 9.2 41 15-55 24-64 (83)
52 2nrj_A HBL B protein; enteroto 93.8 0.13 4.4E-06 43.7 6.6 54 3-56 129-193 (346)
53 3i00_A HIP-I, huntingtin-inter 93.8 0.45 1.5E-05 35.5 8.8 53 6-58 17-80 (120)
54 2wt7_A Proto-oncogene protein 93.7 0.23 7.8E-06 32.7 6.4 32 21-52 26-57 (63)
55 3okq_A BUD site selection prot 93.7 0.44 1.5E-05 36.9 8.8 26 3-28 20-45 (141)
56 2bsg_A Fibritin; viral protein 93.6 0.12 4E-06 46.8 6.2 66 3-68 60-137 (487)
57 1lwu_C Fibrinogen gamma chain; 93.6 0.22 7.7E-06 42.5 7.7 53 4-56 5-57 (323)
58 3jsv_C NF-kappa-B essential mo 93.5 0.53 1.8E-05 34.2 8.5 8 51-58 73-80 (94)
59 3f6n_A Virion-associated prote 93.5 0.21 7.1E-06 38.1 6.5 31 13-43 4-34 (129)
60 3trt_A Vimentin; cytoskeleton, 93.4 0.6 2.1E-05 31.1 8.2 39 21-59 38-76 (77)
61 1aa0_A Fibritin, gpwac E; bact 93.4 0.15 5.1E-06 38.1 5.5 32 28-59 53-84 (113)
62 2wt7_A Proto-oncogene protein 93.3 0.31 1.1E-05 32.0 6.5 32 14-45 26-57 (63)
63 3ghg_A Fibrinogen alpha chain; 93.3 0.2 6.9E-06 46.0 7.3 19 44-62 136-154 (562)
64 1gd2_E Transcription factor PA 93.3 0.21 7.1E-06 34.2 5.7 34 6-39 31-64 (70)
65 1l8d_A DNA double-strand break 93.3 0.19 6.7E-06 35.3 5.8 27 5-31 4-30 (112)
66 3he5_B Synzip2; heterodimeric 93.1 0.34 1.2E-05 31.3 6.2 16 40-55 32-47 (52)
67 2yy0_A C-MYC-binding protein; 93.0 0.19 6.7E-06 32.6 5.1 29 25-53 19-47 (53)
68 3he5_B Synzip2; heterodimeric 93.0 0.38 1.3E-05 31.1 6.3 40 10-49 9-48 (52)
69 3a7p_A Autophagy protein 16; c 93.0 0.63 2.2E-05 36.3 8.8 56 5-60 69-124 (152)
70 1jnm_A Proto-oncogene C-JUN; B 93.0 0.17 5.8E-06 33.1 4.8 33 13-45 24-56 (62)
71 3c9i_A Tail needle protein GP2 93.0 0.69 2.4E-05 38.3 9.4 55 11-65 98-152 (242)
72 3a7o_A Autophagy protein 16; c 92.9 0.61 2.1E-05 32.6 7.6 57 4-60 18-74 (75)
73 2v4h_A NF-kappa-B essential mo 92.8 0.71 2.4E-05 34.4 8.5 34 6-39 26-59 (110)
74 3u1c_A Tropomyosin alpha-1 cha 92.7 0.86 3E-05 32.5 8.6 47 6-52 4-50 (101)
75 3iv1_A Tumor susceptibility ge 92.7 1.4 4.7E-05 31.0 9.4 60 2-61 16-75 (78)
76 3tnu_B Keratin, type II cytosk 92.5 1.1 3.6E-05 32.9 9.1 19 5-23 37-55 (129)
77 2yy0_A C-MYC-binding protein; 92.5 0.2 6.9E-06 32.5 4.6 29 32-60 19-47 (53)
78 3lss_A Seryl-tRNA synthetase; 92.4 0.47 1.6E-05 42.5 8.4 25 34-58 113-137 (484)
79 3oja_A Leucine-rich immune mol 92.4 0.61 2.1E-05 39.6 8.8 49 10-58 420-468 (487)
80 1lwu_C Fibrinogen gamma chain; 92.4 0.35 1.2E-05 41.3 7.2 52 11-62 5-56 (323)
81 1aa0_A Fibritin, gpwac E; bact 92.4 0.32 1.1E-05 36.3 6.1 32 33-64 51-82 (113)
82 1ses_A Seryl-tRNA synthetase; 92.4 0.26 8.9E-06 42.8 6.6 59 6-64 37-103 (421)
83 2dq3_A Seryl-tRNA synthetase; 92.4 0.098 3.4E-06 45.5 3.9 58 6-63 39-106 (425)
84 3u59_A Tropomyosin beta chain; 92.4 1 3.5E-05 31.8 8.6 51 6-56 4-54 (101)
85 3jsv_C NF-kappa-B essential mo 92.1 0.99 3.4E-05 32.8 8.3 19 42-60 71-89 (94)
86 2v66_B Nuclear distribution pr 92.1 1.4 4.7E-05 32.7 9.3 49 3-51 9-61 (111)
87 1go4_E MAD1 (mitotic arrest de 92.1 0.85 2.9E-05 33.3 8.0 30 3-32 11-40 (100)
88 1ses_A Seryl-tRNA synthetase; 91.9 0.35 1.2E-05 42.0 6.8 59 5-63 29-95 (421)
89 3i00_A HIP-I, huntingtin-inter 91.9 1.1 3.9E-05 33.3 8.7 17 15-31 19-35 (120)
90 3trt_A Vimentin; cytoskeleton, 91.9 0.62 2.1E-05 31.1 6.6 33 29-61 39-71 (77)
91 3c9i_A Tail needle protein GP2 91.7 0.91 3.1E-05 37.6 8.6 51 6-56 100-150 (242)
92 1gd2_E Transcription factor PA 91.6 0.35 1.2E-05 33.1 5.1 41 11-51 29-69 (70)
93 3lss_A Seryl-tRNA synthetase; 91.4 0.82 2.8E-05 40.9 8.8 58 6-63 46-135 (484)
94 3tnu_A Keratin, type I cytoske 91.4 1 3.6E-05 33.1 8.0 13 43-55 88-100 (131)
95 2v4h_A NF-kappa-B essential mo 91.3 1.1 3.9E-05 33.3 8.0 15 46-60 90-104 (110)
96 4dnd_A Syntaxin-10, SYN10; str 91.1 0.78 2.7E-05 34.3 7.1 22 41-62 107-128 (130)
97 4emc_A Monopolin complex subun 90.8 0.72 2.5E-05 37.2 7.1 35 8-42 24-58 (190)
98 3ol1_A Vimentin; structural ge 90.7 1.8 6E-05 31.6 8.6 30 23-52 67-103 (119)
99 2dq3_A Seryl-tRNA synthetase; 90.6 0.15 5.2E-06 44.3 3.2 58 5-62 31-98 (425)
100 3mq7_A Bone marrow stromal ant 90.5 1.2 4.1E-05 33.7 7.6 39 27-65 73-111 (121)
101 2wt7_B Transcription factor MA 90.4 0.73 2.5E-05 33.0 6.1 32 29-60 52-83 (90)
102 1fxk_A Prefoldin; archaeal pro 90.4 2.7 9.2E-05 28.9 9.0 34 29-62 69-102 (107)
103 4dnd_A Syntaxin-10, SYN10; str 90.4 1.6 5.4E-05 32.6 8.2 22 34-55 107-128 (130)
104 3hhm_B NISH2 P85alpha; PI3KCA, 90.3 1.4 4.9E-05 37.9 9.0 54 6-59 200-253 (373)
105 2c5k_T Syntaxin TLG1, T-snare 90.2 0.48 1.6E-05 33.8 5.0 20 36-55 72-91 (95)
106 3tnu_B Keratin, type II cytosk 90.1 0.49 1.7E-05 34.7 5.2 33 5-37 30-62 (129)
107 3o0z_A RHO-associated protein 89.9 2.2 7.4E-05 33.7 9.0 49 6-54 92-140 (168)
108 2zqm_A Prefoldin beta subunit 89.8 3.1 0.00011 28.9 9.0 34 29-62 74-107 (117)
109 3tnu_A Keratin, type I cytoske 89.8 3.2 0.00011 30.4 9.4 13 49-61 87-99 (131)
110 1ez3_A Syntaxin-1A; three heli 89.6 4 0.00014 28.6 9.5 23 4-26 12-34 (127)
111 3oja_A Leucine-rich immune mol 89.5 2.1 7.3E-05 36.3 9.4 52 7-58 424-475 (487)
112 2xdj_A Uncharacterized protein 89.4 3.6 0.00012 28.7 9.0 47 16-62 18-64 (83)
113 4emc_A Monopolin complex subun 89.3 2.3 8E-05 34.2 8.9 41 12-52 21-61 (190)
114 3ghg_A Fibrinogen alpha chain; 89.2 1.2 4E-05 41.0 7.9 41 15-55 114-154 (562)
115 3ghg_C Fibrinogen gamma chain; 89.2 2.4 8.1E-05 37.5 9.6 19 2-20 36-54 (411)
116 3m9b_A Proteasome-associated A 89.0 0.51 1.7E-05 39.4 5.0 48 19-66 55-102 (251)
117 3u06_A Protein claret segregat 88.9 1.3 4.6E-05 38.4 7.8 62 5-66 4-65 (412)
118 3a7p_A Autophagy protein 16; c 88.8 3.4 0.00012 32.2 9.3 50 10-59 67-116 (152)
119 1l8d_A DNA double-strand break 88.7 1.2 4.1E-05 31.1 6.2 32 6-37 12-43 (112)
120 3hhm_B NISH2 P85alpha; PI3KCA, 88.6 1.9 6.5E-05 37.2 8.5 51 3-53 204-254 (373)
121 1m1j_C Fibrinogen gamma chain; 88.5 2.1 7.3E-05 37.5 8.9 29 33-61 106-134 (409)
122 3mq7_A Bone marrow stromal ant 88.3 1.9 6.5E-05 32.6 7.2 40 20-59 73-112 (121)
123 1g6u_A Domain swapped dimer; d 88.1 2.1 7.1E-05 27.2 6.3 26 34-59 22-47 (48)
124 1fio_A SSO1 protein; four heli 87.8 2.6 9E-05 31.6 7.9 26 6-31 4-29 (196)
125 1gmj_A ATPase inhibitor; coile 87.5 2.2 7.7E-05 30.3 6.9 20 24-43 57-76 (84)
126 3l4q_C Phosphatidylinositol 3- 87.5 2.9 0.0001 32.9 8.2 46 6-51 98-143 (170)
127 1bb1_B Designed, thermostable 87.4 1.1 3.9E-05 27.0 4.5 25 7-31 5-29 (36)
128 4e61_A Protein BIM1; EB1-like 87.1 3 0.0001 30.7 7.6 33 6-38 6-38 (106)
129 1kd8_B GABH BLL, GCN4 acid bas 87.1 1.8 6E-05 26.5 5.2 22 15-36 5-26 (36)
130 4etp_A Kinesin-like protein KA 87.0 2.5 8.5E-05 36.5 8.3 53 2-54 8-60 (403)
131 2bsg_A Fibritin; viral protein 87.0 0.46 1.6E-05 43.0 3.7 53 13-65 96-159 (487)
132 1gk4_A Vimentin; intermediate 86.9 5.7 0.00019 27.2 8.9 45 5-49 2-50 (84)
133 4e61_A Protein BIM1; EB1-like 86.9 3.3 0.00011 30.5 7.7 34 13-46 6-39 (106)
134 1x8y_A Lamin A/C; structural p 86.7 1.4 4.8E-05 30.6 5.4 13 6-18 5-17 (86)
135 1joc_A EEA1, early endosomal a 86.6 5.3 0.00018 29.2 8.8 51 5-55 5-55 (125)
136 4i0x_B ESAT-6-like protein MAB 86.6 6 0.0002 27.1 8.9 39 2-40 9-47 (103)
137 3kqg_A Langerin, C-type lectin 86.4 1.2 4E-05 32.6 5.1 34 9-46 4-37 (182)
138 3o0z_A RHO-associated protein 86.3 4.3 0.00015 32.0 8.6 11 5-15 70-80 (168)
139 3he5_A Synzip1; heterodimeric 86.2 3.1 0.00011 26.5 6.3 11 49-59 34-44 (49)
140 3l4q_C Phosphatidylinositol 3- 86.1 1.7 5.7E-05 34.3 6.1 52 7-58 92-143 (170)
141 3m9b_A Proteasome-associated A 86.0 0.85 2.9E-05 38.1 4.6 49 26-74 55-103 (251)
142 1fzc_C Fibrin; blood coagulati 85.9 0.41 1.4E-05 40.8 2.7 45 11-55 4-48 (319)
143 2vrs_A Sigma-C capsid protein; 85.9 0.82 2.8E-05 37.4 4.3 37 24-60 3-39 (211)
144 1dx0_A Prion protein; brain, r 85.8 0.15 5.1E-06 42.0 0.0 6 114-119 70-75 (219)
145 3s84_A Apolipoprotein A-IV; fo 85.6 5.2 0.00018 32.9 9.2 7 5-11 45-51 (273)
146 1s94_A S-syntaxin; three helix 85.2 2 6.9E-05 32.4 6.1 26 6-31 38-63 (180)
147 1wt6_A Myotonin-protein kinase 85.2 3.8 0.00013 29.0 7.0 47 15-61 28-74 (81)
148 1wt6_A Myotonin-protein kinase 85.1 3.5 0.00012 29.2 6.8 47 8-54 28-74 (81)
149 2c5k_T Syntaxin TLG1, T-snare 85.1 2.4 8.3E-05 30.0 6.1 23 40-62 69-91 (95)
150 2ve7_C Kinetochore protein NUF 85.1 0.3 1E-05 40.0 1.4 57 6-62 143-206 (250)
151 1s94_A S-syntaxin; three helix 84.8 2.2 7.6E-05 32.2 6.1 23 4-26 43-65 (180)
152 3iv1_A Tumor susceptibility ge 84.5 8.3 0.00028 26.9 8.7 54 8-61 15-68 (78)
153 3s4r_A Vimentin; alpha-helix, 84.5 6.5 0.00022 27.7 8.1 35 26-60 57-91 (93)
154 3okq_A BUD site selection prot 84.5 4.9 0.00017 31.0 7.9 22 13-34 23-44 (141)
155 2wps_A Trimeric autotransporte 84.4 10 0.00036 28.0 9.5 23 2-24 4-26 (107)
156 3he5_A Synzip1; heterodimeric 84.2 4.9 0.00017 25.6 6.5 41 14-54 6-46 (49)
157 2ynz_A General control protein 84.2 7.1 0.00024 30.5 8.8 52 2-53 4-55 (154)
158 2eqb_B RAB guanine nucleotide 84.1 6.8 0.00023 28.4 8.1 29 6-34 7-35 (97)
159 3qh9_A Liprin-beta-2; coiled-c 84.1 9.1 0.00031 27.0 8.8 20 12-31 20-39 (81)
160 1fzc_C Fibrin; blood coagulati 83.8 0.63 2.1E-05 39.7 2.9 47 2-48 2-48 (319)
161 1hjb_A Ccaat/enhancer binding 83.8 3.3 0.00011 29.3 6.2 36 22-57 40-75 (87)
162 3efg_A Protein SLYX homolog; x 83.6 4.1 0.00014 28.0 6.5 53 8-60 11-63 (78)
163 1m1j_C Fibrinogen gamma chain; 83.5 4.6 0.00016 35.4 8.4 23 41-63 107-129 (409)
164 1g6u_A Domain swapped dimer; d 83.4 4 0.00014 25.9 5.8 19 30-48 25-43 (48)
165 2ynz_A General control protein 83.4 5.3 0.00018 31.2 7.8 64 6-69 1-64 (154)
166 3kqg_A Langerin, C-type lectin 83.3 1.3 4.5E-05 32.3 4.2 19 35-53 19-37 (182)
167 3m48_A General control protein 83.1 1.8 6.1E-05 26.0 3.9 26 6-31 2-27 (33)
168 3vkg_A Dynein heavy chain, cyt 82.8 4.3 0.00015 43.8 9.2 56 3-58 2013-2068(3245)
169 1deq_A Fibrinogen (alpha chain 82.8 4.1 0.00014 36.0 7.7 23 33-55 135-157 (390)
170 1go4_E MAD1 (mitotic arrest de 82.8 7.7 0.00026 28.2 8.0 25 3-27 18-42 (100)
171 1dip_A Delta-sleep-inducing pe 82.5 0.86 2.9E-05 32.1 2.7 32 31-62 14-45 (78)
172 3ghg_B Fibrinogen beta chain; 82.4 5.2 0.00018 36.0 8.3 24 2-25 93-116 (461)
173 2j1d_G DAAM1, disheveled-assoc 82.4 3.9 0.00013 35.8 7.5 28 4-31 292-319 (483)
174 1use_A VAsp, vasodilator-stimu 82.3 1.9 6.6E-05 27.5 4.1 8 5-12 8-15 (45)
175 1hjb_A Ccaat/enhancer binding 82.0 4.2 0.00015 28.7 6.2 29 18-46 43-71 (87)
176 2f1m_A Acriflavine resistance 81.9 11 0.00036 29.3 9.2 58 4-61 60-127 (277)
177 1m1j_B Fibrinogen beta chain; 81.9 7.5 0.00025 34.8 9.2 17 2-18 98-114 (464)
178 1v9d_A Diaphanous protein homo 81.7 6.5 0.00022 32.6 8.3 25 4-28 210-234 (340)
179 1dx0_A Prion protein; brain, r 81.6 0.29 9.8E-06 40.3 0.0 8 120-127 69-76 (219)
180 3uul_A Utrophin; spectrin repe 81.3 9.8 0.00033 25.4 9.2 24 10-33 42-65 (118)
181 2yny_A General control protein 81.2 3.5 0.00012 30.4 5.7 31 8-38 73-103 (106)
182 1fio_A SSO1 protein; four heli 80.7 6.2 0.00021 29.5 7.2 58 4-61 9-75 (196)
183 2k48_A Nucleoprotein; viral pr 80.6 13 0.00046 27.4 8.7 57 2-58 33-101 (107)
184 1gmj_A ATPase inhibitor; coile 80.3 7.3 0.00025 27.6 6.9 29 25-53 51-79 (84)
185 3uun_A Dystrophin; triple heli 80.1 11 0.00036 25.1 9.2 21 11-31 43-63 (119)
186 2vrs_A Sigma-C capsid protein; 79.9 2 7E-05 35.1 4.5 35 18-52 4-38 (211)
187 1m1j_B Fibrinogen beta chain; 79.7 7.9 0.00027 34.6 8.6 29 33-61 169-197 (464)
188 4gkw_A Spindle assembly abnorm 79.7 16 0.00056 28.4 9.3 18 3-20 17-34 (167)
189 3efg_A Protein SLYX homolog; x 79.5 7 0.00024 26.8 6.5 53 2-54 12-64 (78)
190 3k4t_A Virion-associated prote 79.4 3.7 0.00013 29.8 5.3 26 5-30 3-28 (95)
191 3c3f_A Alpha/beta peptide with 79.4 3.4 0.00012 25.0 4.2 26 6-31 3-28 (34)
192 1nkp_B MAX protein, MYC proto- 79.3 2.5 8.4E-05 28.6 4.1 30 29-58 51-80 (83)
193 3lay_A Zinc resistance-associa 79.3 15 0.00051 28.6 9.2 44 10-53 84-134 (175)
194 1nkp_B MAX protein, MYC proto- 78.9 2.8 9.4E-05 28.3 4.3 23 24-46 53-75 (83)
195 2js5_A Uncharacterized protein 78.8 13 0.00046 25.5 7.8 30 4-33 3-32 (71)
196 3pev_B Nucleoporin GLE1; RECA, 78.7 3.8 0.00013 34.4 5.9 23 5-27 4-26 (297)
197 1x8y_A Lamin A/C; structural p 78.5 8.1 0.00028 26.6 6.6 23 22-44 32-54 (86)
198 4dk0_A Putative MACA; alpha-ha 78.2 15 0.00051 29.5 9.2 32 31-62 121-152 (369)
199 2oxj_A Hybrid alpha/beta pepti 78.0 3.9 0.00013 24.7 4.2 26 6-31 3-28 (34)
200 3k4t_A Virion-associated prote 78.0 6.2 0.00021 28.6 6.0 30 12-41 3-32 (95)
201 2zqm_A Prefoldin beta subunit 77.8 10 0.00035 26.2 7.1 38 21-58 73-110 (117)
202 1gu4_A CAAT/enhancer binding p 77.5 6.2 0.00021 27.2 5.8 28 32-59 43-70 (78)
203 1dip_A Delta-sleep-inducing pe 77.5 2 6.8E-05 30.2 3.2 32 24-55 14-45 (78)
204 3s84_A Apolipoprotein A-IV; fo 77.3 13 0.00043 30.6 8.6 14 4-17 66-79 (273)
205 1dn1_B Syntaxin 1A, syntaxin b 77.2 11 0.00038 30.4 8.2 26 6-31 30-55 (267)
206 3c3g_A Alpha/beta peptide with 77.2 5.3 0.00018 24.0 4.6 26 6-31 2-27 (33)
207 1kd8_A GABH AIV, GCN4 acid bas 77.0 3.9 0.00013 25.0 4.0 22 7-28 4-25 (36)
208 3lay_A Zinc resistance-associa 77.0 19 0.00065 28.0 9.1 53 8-60 75-134 (175)
209 2efr_A General control protein 76.7 14 0.0005 28.4 8.3 51 9-59 103-153 (155)
210 3fx0_A NF-kappa-B essential mo 76.7 0.57 1.9E-05 34.2 0.3 11 37-47 60-70 (96)
211 3c98_B Syntaxin-1A; protein co 76.6 14 0.00048 28.0 8.2 22 8-29 44-65 (279)
212 2lf0_A Uncharacterized protein 76.3 5.7 0.00019 30.1 5.7 64 2-65 8-97 (123)
213 2wq1_A General control protein 76.3 5.8 0.0002 23.8 4.6 25 6-30 2-26 (33)
214 3fav_B ESAT-6, 6 kDa early sec 76.2 13 0.00046 24.3 7.1 36 2-37 3-38 (94)
215 4b4t_M 26S protease regulatory 76.1 2.2 7.5E-05 37.3 3.9 36 24-59 38-73 (434)
216 3q8t_A Beclin-1; autophagy, AT 76.1 18 0.00061 25.5 9.2 41 5-45 5-45 (96)
217 3m91_A Proteasome-associated A 76.0 13 0.00044 23.9 6.9 41 4-44 9-49 (51)
218 2no2_A HIP-I, huntingtin-inter 75.9 20 0.00067 25.9 9.4 31 23-53 59-89 (107)
219 4ioe_A Secreted protein ESXB; 75.9 14 0.00047 24.0 7.2 36 2-37 7-42 (93)
220 1qoy_A Hemolysin E; toxin, mem 75.9 12 0.00041 32.2 8.3 53 5-57 222-274 (318)
221 1a93_B MAX protein, coiled coi 75.7 4.3 0.00015 24.5 3.9 23 26-48 8-30 (34)
222 1joc_A EEA1, early endosomal a 75.7 13 0.00044 27.1 7.4 39 21-59 14-52 (125)
223 3l1n_A MP1P, cell WALL antigen 75.5 2.2 7.6E-05 33.7 3.4 30 2-31 44-73 (194)
224 3pev_B Nucleoporin GLE1; RECA, 75.3 5.6 0.00019 33.3 6.0 39 2-41 8-48 (297)
225 1uo4_A General control protein 74.9 4.4 0.00015 24.5 3.8 26 6-31 3-28 (34)
226 3gwk_C SAG1039, putative uncha 74.9 15 0.00052 24.2 7.8 28 5-32 9-36 (98)
227 4b4t_M 26S protease regulatory 74.8 2.9 9.8E-05 36.5 4.3 43 9-51 30-72 (434)
228 2iw5_B Protein corest, REST co 74.8 2.9 9.8E-05 34.7 4.0 29 28-56 89-117 (235)
229 1fxk_C Protein (prefoldin); ar 74.8 13 0.00046 26.5 7.2 39 6-44 90-128 (133)
230 4dyl_A Tyrosine-protein kinase 74.8 26 0.0009 29.6 10.2 34 8-41 306-339 (406)
231 3fpp_A Macrolide-specific effl 74.8 16 0.00054 29.1 8.3 23 5-27 70-92 (341)
232 2xv5_A Lamin-A/C; structural p 74.5 18 0.0006 24.7 8.6 32 2-33 3-34 (74)
233 2yo3_A General control protein 74.5 16 0.00056 30.6 8.6 43 19-61 217-259 (268)
234 3u06_A Protein claret segregat 74.4 11 0.00037 32.7 7.8 54 2-55 8-61 (412)
235 3zbh_A ESXA; unknown function, 74.1 15 0.00053 23.8 8.0 35 2-36 7-41 (99)
236 3cve_A Homer protein homolog 1 74.1 18 0.00063 24.7 8.6 51 9-59 12-69 (72)
237 1fxk_A Prefoldin; archaeal pro 74.0 9.7 0.00033 26.0 6.1 35 21-55 68-102 (107)
238 1ux5_A BNI1 protein; structura 73.9 13 0.00044 31.5 8.0 24 5-28 292-315 (411)
239 3mtu_A Tropomyosin alpha-1 cha 73.9 18 0.0006 24.5 7.2 29 4-32 2-30 (75)
240 2aze_B Transcription factor E2 73.4 9.4 0.00032 27.5 6.1 38 6-43 8-45 (106)
241 4g2k_A General control protein 73.3 21 0.00071 27.0 8.1 32 6-37 16-47 (125)
242 3s4r_A Vimentin; alpha-helix, 73.1 8.3 0.00028 27.1 5.6 30 32-61 56-85 (93)
243 3uux_B Mitochondrial division 72.9 10 0.00034 31.6 6.8 28 32-59 198-225 (242)
244 3j21_W 50S ribosomal protein L 72.9 19 0.00064 24.3 7.4 45 6-50 11-60 (72)
245 3m48_A General control protein 72.6 4.7 0.00016 24.2 3.6 22 16-37 5-26 (33)
246 3q8t_A Beclin-1; autophagy, AT 72.4 22 0.00076 25.0 9.3 54 3-56 10-63 (96)
247 3a5t_A Transcription factor MA 72.4 0.93 3.2E-05 33.4 0.5 58 4-61 31-94 (107)
248 1kd8_A GABH AIV, GCN4 acid bas 72.1 5.3 0.00018 24.4 3.8 27 13-39 3-29 (36)
249 3vkg_A Dynein heavy chain, cyt 72.1 14 0.00047 40.1 9.2 30 32-61 1969-1998(3245)
250 4ani_A Protein GRPE; chaperone 72.0 13 0.00044 30.0 7.2 38 5-42 60-97 (213)
251 2js5_A Uncharacterized protein 71.9 4.2 0.00014 28.1 3.7 29 12-40 4-32 (71)
252 2xv5_A Lamin-A/C; structural p 71.5 21 0.00072 24.3 8.1 49 9-57 3-51 (74)
253 1vcs_A Vesicle transport throu 71.4 11 0.00036 26.7 5.9 26 36-61 71-96 (102)
254 1nlw_A MAD protein, MAX dimeri 71.3 6.7 0.00023 26.8 4.7 21 32-52 54-74 (80)
255 2yny_A General control protein 71.3 10 0.00036 27.9 5.9 33 13-45 71-103 (106)
256 1x79_B RAB GTPase binding effe 71.2 28 0.00097 25.6 9.2 26 3-28 5-30 (112)
257 2xhe_B Syntaxin1; exocytosis, 71.2 18 0.00063 28.9 8.0 13 49-61 102-114 (279)
258 1vcs_A Vesicle transport throu 71.2 12 0.0004 26.4 6.1 14 48-61 76-89 (102)
259 2bni_A General control protein 71.0 6.1 0.00021 23.8 3.8 26 6-31 3-28 (34)
260 3mov_A Lamin-B1; LMNB1, B-type 71.0 7.5 0.00026 27.6 5.0 16 27-42 46-61 (95)
261 1nlw_A MAD protein, MAX dimeri 70.5 7 0.00024 26.7 4.6 26 22-47 51-76 (80)
262 3viq_B Mating-type switching p 70.3 15 0.00052 25.9 6.4 40 6-45 3-48 (85)
263 2j1d_G DAAM1, disheveled-assoc 70.2 17 0.00057 31.8 8.0 25 13-37 294-318 (483)
264 3cvf_A Homer-3, homer protein 70.2 24 0.00084 24.5 8.7 56 6-61 15-77 (79)
265 4eah_A Formin-like protein 3, 69.7 11 0.00038 32.3 6.7 50 4-55 287-336 (402)
266 2eqb_B RAB guanine nucleotide 69.3 29 0.001 25.0 8.1 28 2-29 10-37 (97)
267 3fpp_A Macrolide-specific effl 69.2 24 0.00081 28.1 8.2 20 5-24 77-96 (341)
268 4b4t_K 26S protease regulatory 68.9 8.3 0.00029 33.5 5.8 41 20-60 51-91 (428)
269 1uii_A Geminin; human, DNA rep 68.7 19 0.00066 25.4 6.6 17 25-41 53-69 (83)
270 2f1m_A Acriflavine resistance 68.2 35 0.0012 26.3 8.8 62 3-64 66-139 (277)
271 2l7b_A Apolipoprotein E, APO-E 68.0 9 0.00031 32.1 5.7 12 52-63 179-190 (307)
272 2vs0_A Virulence factor ESXA; 67.9 10 0.00035 24.6 4.9 36 2-37 4-39 (97)
273 3c98_B Syntaxin-1A; protein co 67.7 37 0.0013 25.6 9.2 22 4-25 47-68 (279)
274 2oqq_A Transcription factor HY 67.7 19 0.00065 22.6 5.7 30 6-35 5-34 (42)
275 3r2p_A Apolipoprotein A-I; amp 67.6 25 0.00084 26.7 7.7 13 4-16 89-101 (185)
276 1gk4_A Vimentin; intermediate 67.5 26 0.00089 23.8 8.1 27 20-46 28-54 (84)
277 3qh9_A Liprin-beta-2; coiled-c 67.4 30 0.001 24.4 7.9 52 4-55 26-77 (81)
278 3nmd_A CGMP dependent protein 67.3 21 0.0007 24.6 6.4 48 13-60 21-68 (72)
279 2wuj_A Septum site-determining 67.3 7.1 0.00024 25.1 3.9 24 15-38 31-54 (57)
280 2aze_B Transcription factor E2 67.1 15 0.00051 26.4 6.0 44 9-52 4-47 (106)
281 4gkw_A Spindle assembly abnorm 67.1 21 0.00071 27.8 7.1 60 7-66 101-160 (167)
282 3onj_A T-snare VTI1; helix, HA 67.0 29 0.00099 24.1 7.6 25 35-59 68-93 (97)
283 1nkp_A C-MYC, MYC proto-oncoge 67.0 10 0.00035 26.2 4.9 32 28-59 55-86 (88)
284 1uii_A Geminin; human, DNA rep 67.0 22 0.00074 25.2 6.6 25 29-53 50-74 (83)
285 3obv_E Protein diaphanous homo 66.7 22 0.00074 31.1 8.0 26 4-29 281-306 (457)
286 2odv_A Plectin 1, HD1; plakin 66.5 29 0.001 27.8 8.2 55 6-60 167-225 (235)
287 1gk6_A Vimentin; intermediate 66.2 20 0.00067 23.1 5.9 24 8-31 4-27 (59)
288 2xnx_M M protein, M1-BC1; cell 66.1 35 0.0012 26.4 8.2 41 23-63 71-111 (146)
289 3nmd_A CGMP dependent protein 66.0 29 0.001 23.8 7.5 44 6-49 21-64 (72)
290 3ghg_C Fibrinogen gamma chain; 65.8 18 0.0006 32.0 7.3 47 16-62 89-135 (411)
291 3onj_A T-snare VTI1; helix, HA 65.6 31 0.0011 23.9 8.8 19 43-61 69-88 (97)
292 4b4t_K 26S protease regulatory 65.4 12 0.00041 32.5 6.1 46 8-53 46-91 (428)
293 2zvf_A Alanyl-tRNA synthetase; 65.3 5.6 0.00019 29.3 3.5 30 22-51 29-58 (171)
294 3v2d_2 50S ribosomal protein L 65.2 21 0.0007 24.1 6.0 11 36-46 52-62 (72)
295 3rrk_A V-type ATPase 116 kDa s 65.1 17 0.00057 29.7 6.6 27 28-54 102-128 (357)
296 1v9d_A Diaphanous protein homo 64.9 19 0.00066 29.7 7.1 23 12-34 211-233 (340)
297 1fxk_C Protein (prefoldin); ar 64.9 29 0.00099 24.7 7.2 41 11-51 88-128 (133)
298 1nkp_A C-MYC, MYC proto-oncoge 64.8 11 0.00038 26.0 4.8 30 22-51 56-85 (88)
299 1dn1_B Syntaxin 1A, syntaxin b 64.7 40 0.0014 27.0 8.8 24 5-28 36-59 (267)
300 4dyl_A Tyrosine-protein kinase 64.2 17 0.0006 30.7 6.8 34 2-35 307-340 (406)
301 3ilw_A DNA gyrase subunit A; D 63.9 14 0.00049 33.1 6.4 42 20-61 418-459 (470)
302 1r73_A TM1492, 50S ribosomal p 63.8 23 0.00077 23.4 6.0 19 7-25 12-30 (66)
303 1m1j_A Fibrinogen alpha subuni 63.6 32 0.0011 31.2 8.6 19 44-62 137-155 (491)
304 3r8s_Y 50S ribosomal protein L 63.1 18 0.00062 23.6 5.3 20 6-25 11-30 (63)
305 3a7o_A Autophagy protein 16; c 63.1 35 0.0012 23.7 8.4 55 8-62 15-69 (75)
306 3uul_A Utrophin; spectrin repe 62.8 30 0.001 22.9 9.0 16 23-38 48-63 (118)
307 3csx_A Putative uncharacterize 62.7 6.3 0.00021 27.8 3.1 18 17-34 21-38 (81)
308 2yo3_A General control protein 62.4 16 0.00056 30.6 6.2 43 12-54 217-259 (268)
309 2wq1_A General control protein 62.1 17 0.00059 21.7 4.5 25 14-38 3-27 (33)
310 1hs7_A Syntaxin VAM3; UP-and-D 62.0 19 0.00064 25.8 5.6 56 7-62 36-94 (97)
311 2zxx_A Geminin; coiled-coil, c 61.9 37 0.0013 23.6 7.1 23 16-38 39-61 (79)
312 1a93_B MAX protein, coiled coi 61.9 15 0.00053 22.0 4.3 16 36-51 11-26 (34)
313 3sja_C Golgi to ER traffic pro 61.9 28 0.00095 23.5 6.1 18 11-28 6-23 (65)
314 2zdi_C Prefoldin subunit alpha 61.7 30 0.001 25.4 7.0 29 9-37 103-131 (151)
315 1ik9_A DNA repair protein XRCC 61.7 50 0.0017 26.3 8.7 41 8-48 136-176 (213)
316 1gk6_A Vimentin; intermediate 61.4 29 0.001 22.2 6.7 30 15-44 4-33 (59)
317 1lwu_B Fibrinogen beta chain; 61.4 14 0.00047 31.4 5.6 28 26-53 29-56 (323)
318 4ani_A Protein GRPE; chaperone 61.1 34 0.0012 27.5 7.6 33 13-45 61-93 (213)
319 3viq_B Mating-type switching p 61.1 26 0.0009 24.7 6.2 21 4-24 8-28 (85)
320 2iw5_B Protein corest, REST co 60.7 6.4 0.00022 32.6 3.3 30 13-42 88-117 (235)
321 2l7b_A Apolipoprotein E, APO-E 60.7 19 0.00066 30.1 6.4 29 32-60 136-165 (307)
322 3h6p_C ESAT-6-like protein ESX 60.7 20 0.0007 23.7 5.4 36 2-37 4-39 (96)
323 2qyw_A Vesicle transport throu 60.6 40 0.0014 23.6 7.2 15 47-61 86-100 (102)
324 4b4t_J 26S protease regulatory 60.5 12 0.00042 32.5 5.2 43 19-61 26-68 (405)
325 3c3f_A Alpha/beta peptide with 60.5 14 0.00047 22.3 3.9 24 14-37 4-27 (34)
326 4aj5_1 SKA3, spindle and kinet 60.4 18 0.00063 26.4 5.4 9 52-60 87-95 (101)
327 3iz5_c 60S ribosomal protein L 60.3 22 0.00075 26.6 6.0 44 6-49 16-63 (124)
328 1cii_A Colicin IA; bacteriocin 60.2 49 0.0017 30.5 9.2 23 6-28 358-380 (602)
329 2wvr_A Geminin; DNA replicatio 59.9 42 0.0014 27.3 8.0 24 15-38 119-142 (209)
330 1m1j_A Fibrinogen alpha subuni 59.7 51 0.0018 29.9 9.2 27 32-58 132-158 (491)
331 3mq9_A Bone marrow stromal ant 59.5 62 0.0021 27.0 9.3 15 41-55 452-466 (471)
332 4a17_U RPL35, 60S ribosomal pr 59.4 40 0.0014 25.1 7.2 44 7-50 16-64 (124)
333 3csx_A Putative uncharacterize 59.1 5.1 0.00017 28.3 2.1 22 6-27 17-38 (81)
334 3fav_A ESAT-6-like protein ESX 58.9 37 0.0013 22.6 7.6 33 2-34 5-37 (101)
335 2pms_C Pneumococcal surface pr 58.5 33 0.0011 25.8 6.6 20 9-28 66-85 (125)
336 3lnn_A Membrane fusion protein 58.3 43 0.0015 26.7 7.8 55 5-59 92-156 (359)
337 2zjr_V 50S ribosomal protein L 58.3 25 0.00087 23.2 5.4 21 6-26 11-31 (67)
338 3v2d_2 50S ribosomal protein L 58.2 30 0.001 23.2 5.9 14 43-56 52-65 (72)
339 1rtm_1 Mannose-binding protein 58.0 11 0.00039 26.4 3.9 25 2-26 2-26 (149)
340 3kpe_A Fusion glycoprotein F0; 57.9 35 0.0012 22.0 6.9 38 19-56 5-42 (51)
341 2hy6_A General control protein 57.7 16 0.00053 22.0 3.8 25 6-30 3-27 (34)
342 3azd_A Short alpha-tropomyosin 57.7 3.9 0.00013 24.6 1.2 22 23-44 9-30 (37)
343 4b4t_J 26S protease regulatory 57.6 17 0.00058 31.6 5.6 43 11-53 25-67 (405)
344 3fav_A ESAT-6-like protein ESX 57.6 12 0.00039 25.2 3.7 20 36-55 58-77 (101)
345 2zkr_v 60S ribosomal protein L 57.5 29 0.001 25.8 6.2 43 6-48 14-61 (123)
346 3lnn_A Membrane fusion protein 57.3 26 0.00088 28.0 6.4 55 3-57 97-161 (359)
347 2w83_C C-JUN-amino-terminal ki 56.8 47 0.0016 23.2 6.8 47 15-61 23-73 (77)
348 2oto_A M protein; helical coil 56.8 57 0.0019 24.1 8.7 10 15-24 33-42 (155)
349 1r73_A TM1492, 50S ribosomal p 56.7 39 0.0013 22.2 6.3 19 13-31 11-29 (66)
350 2p22_A Suppressor protein STP2 56.7 24 0.00082 27.7 5.9 36 23-58 54-89 (174)
351 2inr_A DNA topoisomerase 4 sub 56.6 19 0.00067 32.6 6.0 43 19-61 455-497 (514)
352 2nov_A DNA topoisomerase 4 sub 56.5 16 0.00055 32.9 5.4 43 19-61 431-473 (496)
353 3uun_A Dystrophin; triple heli 56.4 40 0.0014 22.2 9.0 17 22-38 47-63 (119)
354 3ig3_A Plxna3 protein; plexin 56.4 10 0.00036 35.3 4.3 28 43-70 26-53 (627)
355 1wlq_A Geminin; coiled-coil; 2 56.3 24 0.00083 24.9 5.3 34 13-46 33-66 (83)
356 3ls0_A SLL1638 protein, PSBQ; 56.2 58 0.002 24.6 7.8 48 11-58 30-99 (133)
357 2fxo_A Myosin heavy chain, car 56.1 55 0.0019 23.7 9.3 15 44-58 109-123 (129)
358 2r2v_A GCN4 leucine zipper; co 55.7 26 0.00089 21.0 4.6 26 6-31 3-28 (34)
359 1lwu_B Fibrinogen beta chain; 55.3 12 0.00039 31.8 4.1 32 30-61 26-57 (323)
360 1t3j_A Mitofusin 1; coiled coi 55.2 21 0.00072 25.7 4.9 6 35-40 57-62 (96)
361 2d8d_A Aroag, phospho-2-dehydr 55.2 33 0.0011 23.0 5.7 37 4-40 3-39 (90)
362 1am9_A Srebp-1A, protein (ster 55.1 20 0.00067 24.3 4.6 20 29-48 54-73 (82)
363 3ilw_A DNA gyrase subunit A; D 54.8 25 0.00086 31.5 6.4 22 5-26 417-438 (470)
364 2oqq_A Transcription factor HY 54.1 38 0.0013 21.2 5.6 33 13-45 5-37 (42)
365 1fmh_B General control protein 53.8 21 0.00071 21.0 3.9 25 34-58 3-27 (33)
366 1lrz_A FEMA, factor essential 53.8 47 0.0016 27.9 7.6 55 4-59 247-301 (426)
367 2wpq_A Trimeric autotransporte 53.7 61 0.0021 23.5 9.2 6 53-58 90-95 (99)
368 2zdi_C Prefoldin subunit alpha 53.6 46 0.0016 24.3 6.8 41 11-51 98-138 (151)
369 1uo4_A General control protein 53.6 19 0.00066 21.6 3.7 22 15-36 5-26 (34)
370 2xu6_A MDV1 coiled coil; prote 53.5 40 0.0014 23.2 5.9 55 5-61 10-64 (72)
371 2fxo_A Myosin heavy chain, car 53.3 61 0.0021 23.4 9.1 33 30-62 88-120 (129)
372 1am9_A Srebp-1A, protein (ster 53.2 18 0.00062 24.4 4.1 26 34-59 52-77 (82)
373 1vq8_V 50S ribosomal protein L 53.0 45 0.0015 22.3 6.0 18 7-24 15-32 (71)
374 2j69_A Bacterial dynamin-like 53.0 24 0.00082 32.0 6.0 9 30-38 371-379 (695)
375 2p22_A Suppressor protein STP2 52.8 29 0.00098 27.2 5.7 26 21-46 59-84 (174)
376 1zvu_A Topoisomerase IV subuni 52.8 27 0.00091 32.9 6.4 14 48-61 432-445 (716)
377 3l1n_A MP1P, cell WALL antigen 52.7 9.8 0.00033 30.0 3.1 21 2-22 51-71 (194)
378 2zjr_V 50S ribosomal protein L 52.5 41 0.0014 22.1 5.7 18 14-31 12-29 (67)
379 3mov_A Lamin-B1; LMNB1, B-type 52.2 58 0.002 22.8 8.5 20 29-48 41-60 (95)
380 3iz5_c 60S ribosomal protein L 51.8 41 0.0014 25.1 6.2 45 13-57 16-64 (124)
381 4dk0_A Putative MACA; alpha-ha 51.3 45 0.0015 26.6 6.9 32 24-55 121-152 (369)
382 2wvr_A Geminin; DNA replicatio 50.8 51 0.0017 26.8 7.0 27 20-46 117-143 (209)
383 3zx6_A HAMP, methyl-accepting 50.2 1E+02 0.0035 25.1 9.5 30 42-71 279-308 (341)
384 1t3j_A Mitofusin 1; coiled coi 50.2 30 0.001 24.9 5.1 15 23-37 52-66 (96)
385 3uux_B Mitochondrial division 49.9 99 0.0034 25.6 8.8 46 3-48 176-221 (242)
386 1ux5_A BNI1 protein; structura 49.7 48 0.0016 28.0 7.1 19 15-33 295-313 (411)
387 2bni_A General control protein 49.6 24 0.00083 21.2 3.7 23 15-37 5-27 (34)
388 3rrk_A V-type ATPase 116 kDa s 49.6 43 0.0015 27.2 6.6 32 9-40 97-128 (357)
389 4eah_A Formin-like protein 3, 49.2 31 0.0011 29.5 5.9 18 3-20 293-310 (402)
390 2w83_C C-JUN-amino-terminal ki 49.1 35 0.0012 23.8 5.1 25 24-48 43-67 (77)
391 3bbo_Z Ribosomal protein L29; 49.0 26 0.00088 27.8 4.9 18 7-24 76-93 (173)
392 2j69_A Bacterial dynamin-like 49.0 27 0.00091 31.7 5.7 30 15-44 363-392 (695)
393 2w6b_A RHO guanine nucleotide 48.9 55 0.0019 21.6 7.2 22 11-32 10-31 (56)
394 3lnr_A Aerotaxis transducer AE 48.9 6 0.00021 29.9 1.3 20 38-57 141-160 (175)
395 2y3a_B Phosphatidylinositol 3- 48.8 89 0.003 26.0 8.5 56 5-60 91-146 (302)
396 1rtm_1 Mannose-binding protein 48.7 21 0.00072 25.0 4.1 24 9-32 2-25 (149)
397 3err_A Fusion protein of micro 48.5 41 0.0014 30.1 6.8 50 8-60 32-82 (536)
398 2xcs_B DNA gyrase subunit B, D 48.4 30 0.001 32.5 6.0 43 19-61 638-680 (692)
399 2ve7_A Kinetochore protein HEC 48.3 15 0.0005 30.6 3.6 19 26-44 186-204 (315)
400 2qyw_A Vesicle transport throu 47.7 57 0.002 22.8 6.2 16 39-54 85-100 (102)
401 3r8s_Y 50S ribosomal protein L 47.7 35 0.0012 22.2 4.7 18 14-31 12-29 (63)
402 3gwk_C SAG1039, putative uncha 47.6 56 0.0019 21.3 8.8 20 30-49 60-79 (98)
403 2ic6_A Nucleocapsid protein; h 47.2 69 0.0024 22.3 8.7 55 4-58 5-71 (78)
404 2lw1_A ABC transporter ATP-bin 47.1 64 0.0022 21.8 7.0 49 3-51 21-75 (89)
405 1qoy_A Hemolysin E; toxin, mem 46.8 74 0.0025 27.3 7.8 45 3-47 227-271 (318)
406 3zcc_A HAMP, osmolarity sensor 46.7 51 0.0017 20.6 7.1 9 30-38 71-79 (114)
407 1gs9_A Apolipoprotein E, APOE4 46.4 84 0.0029 23.8 7.4 6 54-59 151-156 (165)
408 2lw1_A ABC transporter ATP-bin 46.1 66 0.0023 21.7 8.0 48 10-57 21-74 (89)
409 4fi5_A Nucleoprotein; structur 45.3 91 0.0031 23.1 8.5 18 5-22 23-40 (113)
410 3q0x_A Centriole protein; cent 45.3 74 0.0025 25.8 7.3 43 11-53 171-213 (228)
411 2a01_A Apolipoprotein A-I; fou 45.2 75 0.0026 25.1 7.2 60 1-60 107-183 (243)
412 3sjb_C Golgi to ER traffic pro 44.9 83 0.0028 22.5 7.1 16 12-27 24-39 (93)
413 3ghg_B Fibrinogen beta chain; 44.7 48 0.0016 29.7 6.5 26 27-52 165-190 (461)
414 1nog_A Conserved hypothetical 44.6 16 0.00055 28.5 3.1 20 9-28 51-70 (177)
415 3h6p_C ESAT-6-like protein ESX 44.6 18 0.00061 24.0 3.0 34 11-44 6-39 (96)
416 2nov_A DNA topoisomerase 4 sub 44.5 28 0.00096 31.3 5.0 42 4-45 430-471 (496)
417 3obv_E Protein diaphanous homo 43.9 62 0.0021 28.2 7.1 22 13-34 283-304 (457)
418 2gtv_X CM, chorismate mutase; 43.9 22 0.00076 25.4 3.5 36 4-39 3-46 (104)
419 3kpe_A Fusion glycoprotein F0; 43.7 63 0.0021 20.8 6.9 36 11-46 4-39 (51)
420 3u5e_h 60S ribosomal protein L 43.4 48 0.0017 24.5 5.4 39 5-43 13-60 (120)
421 3ou5_A Serine hydroxymethyltra 43.4 58 0.002 29.4 6.9 62 3-68 424-488 (490)
422 2dnx_A Syntaxin-12; snare, HAB 43.3 42 0.0015 24.3 5.1 42 10-51 20-63 (130)
423 1ysm_A Calcyclin-binding prote 43.2 24 0.00081 24.3 3.5 8 16-23 8-15 (77)
424 3q0x_A Centriole protein; cent 43.2 1E+02 0.0035 25.0 7.8 41 6-46 173-213 (228)
425 2ic9_A Nucleocapsid protein; h 43.0 91 0.0031 22.5 8.4 20 3-22 4-23 (96)
426 2pms_C Pneumococcal surface pr 43.0 57 0.002 24.5 5.8 22 14-35 64-85 (125)
427 3bbo_Z Ribosomal protein L29; 42.8 41 0.0014 26.6 5.2 19 13-31 75-93 (173)
428 1qu7_A Methyl-accepting chemot 42.7 1.2E+02 0.0041 23.7 8.6 17 49-65 206-222 (227)
429 3sjb_C Golgi to ER traffic pro 42.6 91 0.0031 22.3 7.6 43 18-60 23-77 (93)
430 2l5g_A GPS2 protein, G protein 42.6 32 0.0011 21.1 3.6 22 2-23 13-34 (38)
431 2odv_A Plectin 1, HD1; plakin 42.5 93 0.0032 24.8 7.4 47 15-61 169-219 (235)
432 1mof_A Moloney murine leukemia 41.8 58 0.002 21.3 5.0 21 5-25 3-23 (55)
433 4i0x_B ESAT-6-like protein MAB 41.8 78 0.0027 21.3 9.3 50 8-57 22-85 (103)
434 1lq7_A Alpha3W; three helix bu 41.2 77 0.0026 21.1 6.4 39 6-44 4-44 (67)
435 2w6b_A RHO guanine nucleotide 41.0 75 0.0026 20.9 7.4 27 15-41 7-33 (56)
436 3rmi_A Chorismate mutase prote 40.9 86 0.0029 22.3 6.4 34 5-38 13-46 (114)
437 2r32_A GCN4-PII/tumor necrosis 40.9 33 0.0011 27.0 4.3 34 6-39 9-42 (166)
438 3nym_A Uncharacterized protein 40.7 99 0.0034 23.3 6.8 52 7-58 55-111 (128)
439 3gn4_A Myosin-VI; unconvention 40.7 15 0.00053 28.2 2.4 43 6-48 74-116 (148)
440 2lf0_A Uncharacterized protein 40.6 77 0.0026 23.8 6.2 45 9-53 8-57 (123)
441 3h0g_A DNA-directed RNA polyme 40.5 5.9 0.0002 40.6 0.0 72 63-135 1549-1620(1752)
442 2l5g_A GPS2 protein, G protein 40.3 52 0.0018 20.1 4.3 25 6-30 10-34 (38)
443 1zvu_A Topoisomerase IV subuni 40.1 54 0.0019 30.9 6.4 47 17-63 401-447 (716)
444 3cvf_A Homer-3, homer protein 39.9 91 0.0031 21.5 8.3 58 6-63 15-72 (79)
445 4ad8_A DNA repair protein RECN 39.7 1.4E+02 0.0049 25.4 8.6 57 4-60 179-241 (517)
446 3zsu_A TLL2057 protein, cyanoq 39.5 68 0.0023 24.1 5.8 55 4-58 21-96 (130)
447 3bvo_A CO-chaperone protein HS 39.2 1.2E+02 0.0042 23.5 7.5 52 3-57 150-202 (207)
448 3gp4_A Transcriptional regulat 38.7 1.1E+02 0.0038 22.2 7.8 53 2-54 79-131 (142)
449 3lpx_A GYRA, DNA gyrase, A sub 38.5 65 0.0022 29.2 6.4 44 3-46 438-481 (500)
450 4fla_A Regulation of nuclear P 38.4 1.3E+02 0.0043 22.8 8.6 57 2-58 91-147 (152)
451 1woz_A 177AA long conserved hy 38.0 23 0.00078 27.5 3.0 44 2-45 50-100 (177)
452 1fmh_A General control protein 37.9 61 0.0021 19.0 4.3 29 5-33 2-30 (33)
453 2zxx_A Geminin; coiled-coil, c 37.7 1E+02 0.0034 21.4 7.0 48 13-60 29-76 (79)
454 2hy6_A General control protein 37.6 48 0.0016 19.9 3.7 27 13-39 3-29 (34)
455 1nog_A Conserved hypothetical 37.6 60 0.002 25.2 5.4 42 7-48 49-97 (177)
456 2y3a_B Phosphatidylinositol 3- 37.5 1.5E+02 0.0051 24.6 8.1 52 2-53 95-146 (302)
457 3kin_B Kinesin heavy chain; mo 37.3 49 0.0017 23.8 4.6 35 26-60 83-117 (117)
458 3gp4_A Transcriptional regulat 37.3 1.2E+02 0.004 22.0 8.9 63 2-64 65-134 (142)
459 1wlq_A Geminin; coiled-coil; 2 37.1 1.1E+02 0.0037 21.6 7.4 48 6-53 33-80 (83)
460 3u5e_h 60S ribosomal protein L 37.1 60 0.0021 24.0 5.1 54 1-54 1-64 (120)
461 2xhe_B Syntaxin1; exocytosis, 36.5 1.6E+02 0.0054 23.3 8.5 60 2-61 90-160 (279)
462 2lem_A Apolipoprotein A-I; lip 36.4 31 0.0011 26.9 3.6 65 1-65 51-121 (216)
463 1dkg_A Nucleotide exchange fac 36.2 89 0.003 24.4 6.3 51 4-57 35-85 (197)
464 2xkj_E Topoisomerase IV; type 36.1 50 0.0017 31.3 5.5 44 3-46 695-738 (767)
465 2xcs_B DNA gyrase subunit B, D 36.0 48 0.0017 31.1 5.3 47 17-63 636-682 (692)
466 3m0d_C TNF receptor-associated 36.0 88 0.003 20.2 8.8 53 6-58 8-60 (65)
467 1rty_A YVQK protein; all alpha 35.7 1.6E+02 0.0054 23.1 7.7 59 5-63 32-105 (193)
468 1d2d_A TRNA synthetase, tRNA l 35.7 53 0.0018 21.2 4.1 40 1-44 1-43 (59)
469 3ajw_A Flagellar FLIJ protein; 35.6 1.1E+02 0.0038 21.3 8.3 50 4-53 67-116 (150)
470 2ibl_A Fibritin; foldon, trime 35.6 59 0.002 24.6 4.9 32 8-39 61-92 (130)
471 3bvo_A CO-chaperone protein HS 35.5 1.1E+02 0.0038 23.8 6.7 53 5-59 136-191 (207)
472 2p2u_A HOST-nuclease inhibitor 35.3 1.4E+02 0.0049 22.5 9.1 55 3-57 15-70 (171)
473 2bbh_A Divalent cation transpo 35.0 72 0.0025 24.5 5.5 54 6-61 188-241 (269)
474 2xz3_A Maltose ABC transporter 34.9 1.4E+02 0.0049 24.7 7.7 56 2-59 358-413 (463)
475 4hpq_C ATG17, KLTH0D15642P; au 34.8 2.2E+02 0.0076 24.8 9.1 60 3-62 234-293 (413)
476 2ocy_A RAB guanine nucleotide 34.8 1.5E+02 0.0053 22.7 7.8 55 6-60 15-72 (154)
477 2yko_A LINE-1 ORF1P; RNA-bindi 34.4 1E+02 0.0035 25.2 6.5 50 6-55 1-50 (233)
478 1p9i_A Cortexillin I/GCN4 hybr 34.4 63 0.0022 18.7 3.8 29 6-34 1-29 (31)
479 2xu6_A MDV1 coiled coil; prote 34.3 1.1E+02 0.0038 20.9 8.8 58 3-62 8-65 (72)
480 1mof_A Moloney murine leukemia 33.6 54 0.0019 21.4 3.9 28 32-59 2-29 (55)
481 3j21_W 50S ribosomal protein L 33.5 1.1E+02 0.0036 20.4 6.4 52 6-57 3-60 (72)
482 3pxg_A Negative regulator of g 33.5 1.2E+02 0.0041 25.6 7.1 60 5-64 395-468 (468)
483 2cly_A ATP synthase B chain, m 33.3 1.6E+02 0.0056 23.5 7.5 60 1-60 81-143 (214)
484 3vbb_A Seryl-tRNA synthetase, 33.1 79 0.0027 28.5 6.1 62 2-63 39-136 (522)
485 1gk7_A Vimentin; intermediate 33.1 80 0.0027 18.9 4.4 35 3-37 5-39 (39)
486 1twf_A B220, DNA-directed RNA 32.8 9.2 0.00032 39.2 0.0 78 63-140 1645-1722(1733)
487 4g2k_A General control protein 32.4 1.6E+02 0.0055 22.1 9.3 58 2-59 19-80 (125)
488 1htn_A Tetranectin; plasminoge 32.4 23 0.00079 25.8 2.2 36 10-46 8-43 (182)
489 4a17_U RPL35, 60S ribosomal pr 32.3 1.5E+02 0.0052 21.9 7.2 52 6-57 7-64 (124)
490 1tqg_A Chemotaxis protein CHEA 32.3 1.1E+02 0.0036 20.4 5.4 48 4-52 1-49 (105)
491 1u4q_A Spectrin alpha chain, b 32.3 1.2E+02 0.0041 23.4 6.4 57 4-60 36-96 (322)
492 3sja_C Golgi to ER traffic pro 32.2 1.1E+02 0.0039 20.4 6.6 40 4-43 6-57 (65)
493 3cve_A Homer protein homolog 1 31.9 1.2E+02 0.0041 20.6 8.8 62 2-63 5-66 (72)
494 1rv3_A Serine hydroxymethyltra 31.8 1.5E+02 0.0051 24.8 7.3 51 1-51 412-471 (483)
495 4egw_A Magnesium transport pro 31.7 1.8E+02 0.0062 22.7 7.4 48 6-53 173-225 (280)
496 1wlx_A Alpha-actinin 4; three- 31.7 1E+02 0.0036 22.9 5.7 48 25-72 45-95 (129)
497 2ke4_A CDC42-interacting prote 31.7 1.4E+02 0.0046 21.1 6.7 58 3-60 14-83 (98)
498 1fgj_A Hydroxylamine oxidoredu 31.7 45 0.0015 29.8 4.3 53 14-67 472-525 (546)
499 2oie_A RS21-C6; helix, hydrola 31.6 1.1E+02 0.0036 21.0 5.4 54 5-58 15-84 (111)
500 1j1d_B Troponin T, TNT; THIN f 31.6 1.3E+02 0.0043 21.7 6.0 47 5-51 43-89 (106)
No 1
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=97.68 E-value=0.00024 Score=55.67 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
.|-...+.+|.+++.+|..-+.||.+|+.||..|-..|..+-.||.+|-.||..++.||
T Consensus 33 ~~~~i~~~qi~en~~~iakNqadI~~L~~dI~dLd~~v~l~~RdIgsL~ddVa~NqaDI 91 (157)
T 2qih_A 33 KDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADI 91 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhcchhhHHHhhHHHH
Confidence 34444455555555555555555555555555555544444455555544444444443
No 2
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=97.55 E-value=0.00047 Score=53.96 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
.|.+|.+++.+|+.-+.||..|+.||..|-..|..+-+||..|-.||..=+.|+..++.||.
T Consensus 38 ~~~qi~en~~~iakNqadI~~L~~dI~dLd~~v~l~~RdIgsL~ddVa~NqaDIakNqADId 99 (157)
T 2qih_A 38 AKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIA 99 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhcchhhHHHhhHHHHHHhHHHHH
Confidence 36789999999999999999999999999999999999999999999888888888888763
No 3
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=97.37 E-value=0.00049 Score=45.28 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
.|.+|.++|.+|...|..|+.||..||.||..-|++
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 4
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0027 Score=41.02 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
.+.+..++.++.++++.+..+++-+.++|+.+..+.+++..+.++|..+|..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 4 ANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666667777666666777777777777777777777777766666665543
No 5
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=97.21 E-value=0.00091 Score=43.98 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 20 MVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 20 v~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
|.+|.++|.+|...|..|+.||..|+.||...|++
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544444444444444444444
No 6
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=97.02 E-value=0.0011 Score=39.63 Aligned_cols=26 Identities=19% Similarity=0.585 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 27 MASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 27 V~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
|+.||++|+.||.+++.||-+++.||
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.93 E-value=0.0063 Score=45.24 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
||..|..|+.++..+...+..++.++..++..+..+...+..++..+..++..
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 56 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDE 56 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444444444444444444444444433333
No 8
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=96.90 E-value=0.00014 Score=59.38 Aligned_cols=11 Identities=36% Similarity=0.866 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q psy9603 69 KRGYGVDKRGY 79 (150)
Q Consensus 69 ~~gYg~p~~gY 79 (150)
+++|..|+++|
T Consensus 390 ~~~~~~~~~~~ 400 (448)
T 2z73_A 390 PQGYAPPPQGY 400 (448)
T ss_dssp -----------
T ss_pred CCCCCCCcCCC
Confidence 33444444443
No 9
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.78 E-value=0.0056 Score=45.52 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
+.++..+...+..|..++..++..+..+...+..++..+..++..
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 56 (284)
T 1c1g_A 12 KLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDE 56 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433333333333
No 10
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.75 E-value=0.011 Score=44.98 Aligned_cols=53 Identities=9% Similarity=0.320 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
....|+.++..++.++..||.+..+++.....++..+.+|++++..|...+..
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444433
No 11
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.67 E-value=0.012 Score=44.66 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
.|+-.++.+...|++++..++..+..||.+...++....++++.+..|++++..|...+
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666677777777666665543
No 12
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.01 Score=38.25 Aligned_cols=55 Identities=11% Similarity=0.230 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
|.+.+..+.+++.++++.+..++.-+..+|+.+..+.+++..+.++|..+|+.|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 3 FANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777777788887878888888888877776653
No 13
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=96.51 E-value=0.0036 Score=35.96 Aligned_cols=22 Identities=18% Similarity=0.700 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy9603 37 IKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 37 LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
||.+|.+||-+|..||++|..|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4444444444444444444444
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.16 E-value=0.028 Score=48.57 Aligned_cols=51 Identities=0% Similarity=0.195 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
+...+++...++.++.+|+..+...|+.+.+||++++.++.++..+.+.+.
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333344444555555555566666666666677777777766666554
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.14 E-value=0.026 Score=45.60 Aligned_cols=45 Identities=7% Similarity=0.147 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
|..+|..|.+++..+++.+..+++.+..++.++..++.|+..++.
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ 74 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444433333
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.11 E-value=0.035 Score=44.81 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
|..|+..+..|...|..|..++..+++.+..+++.+..++.++..++.|+..+++
T Consensus 20 i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ 74 (256)
T 3na7_A 20 IDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74 (256)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444555555555555555555555554443
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.10 E-value=0.046 Score=38.78 Aligned_cols=38 Identities=5% Similarity=0.254 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGS 43 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~ 43 (150)
++.|.+.|..+-+-|.-|+..|.+||..-+.|.+++.+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444444444444444444444
No 18
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=96.09 E-value=0.013 Score=35.55 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 28 ASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 28 ~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
+.||+-|+.||+..--|.-.|+.||+.|+.||
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsalk 35 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSALK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444445555555555554
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.93 E-value=0.036 Score=47.91 Aligned_cols=46 Identities=0% Similarity=0.221 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 17 KEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 17 K~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
++++...++....+++++..|+..+.+.|+-+..||++++.+++++
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3333333333344445555555555555556666666666665554
No 20
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=95.63 E-value=0.016 Score=40.65 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 25 EDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 25 ~DV~~LK~DV~~LK~DV~~L 44 (150)
++|+.++++|+.+|.+++++
T Consensus 15 T~iaa~~~ev~t~~~~l~~~ 34 (74)
T 1avy_A 15 TDIASVRQEVNTAKGNISSL 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhheeeccccchhhhh
Confidence 33333333333333333333
No 21
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.60 E-value=0.11 Score=36.92 Aligned_cols=53 Identities=9% Similarity=0.290 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
|..|+.+|.+||+.-..|.+++.+++.....|..+...||++-...++.+..|
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555556666666666666666655554
No 22
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=95.42 E-value=0.071 Score=36.63 Aligned_cols=46 Identities=9% Similarity=0.250 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
.+..+.+++.....-...+-.+|..|+.-|..|.+|+....+.+..
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344455555555555555555444444433
No 23
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=95.28 E-value=0.081 Score=47.40 Aligned_cols=55 Identities=15% Similarity=0.302 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIK-----------VDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK-----------~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
+.++.++.+|+...+.+...|..+| .|++.|++.+.+||+++..|++.+.++++.
T Consensus 80 r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 80 RQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455544444444444433 134444555555555554444444444443
No 24
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=95.28 E-value=0.045 Score=35.95 Aligned_cols=30 Identities=17% Similarity=0.482 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 26 DMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 26 DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
-|+.|..|-+.|..||+.|..|++.|..||
T Consensus 25 ivarlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 25 IVARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444444443
No 25
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=95.19 E-value=0.044 Score=38.34 Aligned_cols=34 Identities=18% Similarity=0.510 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
.|+.+.++|+.++..|..+|.+++++..||+.|+
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 3444444444444444444444444444444443
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.051 Score=47.06 Aligned_cols=63 Identities=17% Similarity=0.368 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYG 66 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg 66 (150)
.+|..|+++|..|++++.+|+++|.+++..+..|++...+..+--..|-.++.++|..|..|=
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~v 65 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYL 65 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 467889999999999999999999999999999998888877788889999999999988874
No 27
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=95.16 E-value=0.12 Score=38.12 Aligned_cols=50 Identities=10% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
|..||+.+.++.+.+.+++.+-.+...|+..+|...+.|+.++..||.-+
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555555555555555555544433
No 28
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=95.05 E-value=0.074 Score=47.68 Aligned_cols=57 Identities=11% Similarity=0.204 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK---VDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK---~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
-+.++.++.+|+...+.+...|..+| +|++.|++.+.+||+++..|++.+.++.+.+
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665544 2445555555555555555555555444443
No 29
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=94.97 E-value=0.13 Score=46.04 Aligned_cols=67 Identities=10% Similarity=0.195 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIK-----------EDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVD 68 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK-----------~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~ 68 (150)
+...++.|+.+...+...|..+| +|+++|+..+..||+++.+|++.+..+++.+..+=.-|+=.=-+
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~ 159 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHP 159 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 45678888888888888888876 47889999999999999999999999999998877666555433
No 30
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=94.91 E-value=0.048 Score=33.05 Aligned_cols=31 Identities=23% Similarity=0.503 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
.||+.|+.||+..-.|---|+.||+.|+.||
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsalk 35 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSALK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444333334444444444443
No 31
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=94.89 E-value=0.088 Score=44.78 Aligned_cols=61 Identities=8% Similarity=0.272 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhcC
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIK----VDMGSIKEDMGSIK-------DDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK----~DV~~LK~DV~~LK-------~DV~~LK~Dvs~lK~Dig 63 (150)
++.|+.|+.++...++.+..+.+++..+| .|...||+++..|. .|+..|+.++..++.+|.
T Consensus 122 ~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 122 KEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 44556666666666666665555555433 33445555555443 356788888888888876
No 32
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=94.85 E-value=0.0089 Score=39.32 Aligned_cols=33 Identities=18% Similarity=0.512 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDM 41 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV 41 (150)
|.+-|+.|.+|-+.|..||+.|..||+.|..||
T Consensus 22 lenivarlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 333444455555554444444444444444444
No 33
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.80 E-value=0.2 Score=37.15 Aligned_cols=53 Identities=9% Similarity=0.240 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVD----MGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~D----V~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
.+.|+..+..|+.++.++|+-....+++ ++.|..++++|++.-..|+..+..|
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReL 61 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777666666654 6666666666666666666665554
No 34
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=94.80 E-value=0.088 Score=46.33 Aligned_cols=57 Identities=9% Similarity=0.265 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK---VDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK---~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
-+.++.++.+|+...+.+...|..+| +|.+.|++.+.+||+++..|++.+.++.+.+
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666665543 3345555555555555555555555544443
No 35
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=94.73 E-value=0.11 Score=33.85 Aligned_cols=33 Identities=6% Similarity=0.270 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
+.+|...+..|.++-..|+..|+.|++.+..||
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444
No 36
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.63 E-value=0.22 Score=39.94 Aligned_cols=53 Identities=8% Similarity=0.225 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIK-------VD----MGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK-------~D----V~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
.+|..+....+.|++.+..|+.++..+| ++ |+.|..+++.|++....|+..+.
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333 33 44444444444444444444443
No 37
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=94.45 E-value=0.18 Score=35.78 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
.|..+-++|.+|+.+|..|+.+|.+|+
T Consensus 6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~ 32 (127)
T 1ez3_A 6 FMDEFFEQVEEIRGFIDKIAENVEEVK 32 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666555443
No 38
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=94.44 E-value=0.094 Score=47.04 Aligned_cols=64 Identities=11% Similarity=0.252 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIK---EDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGY 65 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK---~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGy 65 (150)
+...++.|+.+...+...|..+| +|+.+|+..+..||+++.+|++.+..+.+++..+=.-|+=.
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 111 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNI 111 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45778889999999999998886 46889999999999999999999999999998776665544
No 39
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.24 E-value=0.35 Score=34.57 Aligned_cols=28 Identities=11% Similarity=0.310 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 30 IKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 30 LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
+-.+|..|..-+..|..|+..+++.+..
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 40
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=94.21 E-value=0.42 Score=35.24 Aligned_cols=59 Identities=12% Similarity=0.256 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
+|=+.|.=.|..||+.+.++.+.+++++.+-.....|+..+|-....|+.+++.++.-+
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556688888888888888888888888888888888888888888888887643
No 41
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=94.16 E-value=0.41 Score=32.73 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
..||..|..|+.|.....+....+..++.....-...+-++|.+|+..|+.+..|
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3556666666666666555555555555555555555555555555555554443
No 42
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=94.08 E-value=0.14 Score=45.05 Aligned_cols=67 Identities=7% Similarity=0.185 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIK---EDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVD 68 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK---~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~ 68 (150)
+...++.|+.+...+...|..+| +|..+|+..+..||+++.+|++.+..+.+++..+=.-|+=.=-+
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 112 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHP 112 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 45678888888888888888775 56889999999999999999999999999998877666655433
No 43
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=94.06 E-value=0.39 Score=34.47 Aligned_cols=56 Identities=9% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 3 KEDMGSIKEDMASIKED-------------MVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~D-------------v~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
++++..||..=-+||+- +..|..++..|..++..|+.+.+.++.++..+|.....|
T Consensus 20 ~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 20 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666665555554 355566666666666666666666666666666655544
No 44
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.05 E-value=0.2 Score=33.21 Aligned_cols=34 Identities=12% Similarity=0.275 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
+..|...+..|+++...|+..|+.|+.++..||+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 45
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.04 E-value=0.41 Score=33.96 Aligned_cols=22 Identities=9% Similarity=0.293 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 32 VDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 32 ~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
.+|..|+.-+..|..|+....+
T Consensus 44 ~ei~sL~kKiq~lE~eld~~~e 65 (101)
T 3u59_A 44 EEQQGLQKKLKGTEDEVEKYSE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333
No 46
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=94.04 E-value=0.098 Score=39.95 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGS 36 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~ 36 (150)
|+.|+.+|+++++++.+|++||..|..|+..
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5566666666666666666666666665554
No 47
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=93.99 E-value=0.39 Score=33.61 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHhhh
Q psy9603 32 VDMGSIKEDMGS-------IKDDMGSIKEDMASIKE 60 (150)
Q Consensus 32 ~DV~~LK~DV~~-------LK~DV~~LK~Dvs~lK~ 60 (150)
.|+..||.||.. |..-|.+|++++.-||.
T Consensus 49 ~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 49 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555533 34445566666666553
No 48
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=93.93 E-value=0.5 Score=33.05 Aligned_cols=34 Identities=12% Similarity=0.353 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
|+.|+..|..+..|-+.|-.++..++.++..+|.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~ 35 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 35 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667766666666666666666666553
No 49
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.93 E-value=0.53 Score=34.45 Aligned_cols=8 Identities=25% Similarity=0.588 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy9603 33 DMGSIKED 40 (150)
Q Consensus 33 DV~~LK~D 40 (150)
|+..||.|
T Consensus 70 di~~lrK~ 77 (119)
T 3ol1_A 70 TLQSFRQD 77 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhc
Confidence 33333333
No 50
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.86 E-value=0.41 Score=38.36 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 20 MVSIKEDMASIKVDMGSIKEDM 41 (150)
Q Consensus 20 v~~LK~DV~~LK~DV~~LK~DV 41 (150)
...|++.+..|+.++..+|+-.
T Consensus 58 ~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 58 NRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 51
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=93.84 E-value=0.63 Score=32.66 Aligned_cols=41 Identities=7% Similarity=0.221 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
.|.+-+..|+.||..|+..|..+--++..|++--..+=.|+
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333333333
No 52
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=93.79 E-value=0.13 Score=43.75 Aligned_cols=54 Identities=4% Similarity=0.219 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDM----ASIKVDMGSIKE-------DMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV----~~LK~DV~~LK~-------DV~~LK~DV~~LK~Dvs 56 (150)
+.+|..++.++..+.+++..+|..+ ..|+++++.|.. |+..|++++..++.+++
T Consensus 129 ~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 129 RGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 4455555555555555544433332 244444443332 44455555555555555
No 53
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=93.79 E-value=0.45 Score=35.48 Aligned_cols=53 Identities=11% Similarity=0.395 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Q psy9603 6 MGSIKEDMASIKEDMVSIKED----MASIKVDMGSIKEDMGSIK-------DDMGSIKEDMASI 58 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~D----V~~LK~DV~~LK~DV~~LK-------~DV~~LK~Dvs~l 58 (150)
|..|+.+|..|+.++..||.+ |..||.=|+.|..+.++-+ .|...|+.++..+
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666655544 3455555555555555443 3444555555544
No 54
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=93.74 E-value=0.23 Score=32.72 Aligned_cols=32 Identities=0% Similarity=0.266 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 21 VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 21 ~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
..|...|..|+.+-..|+..|+.|++.+..||
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444443
No 55
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=93.69 E-value=0.44 Score=36.86 Aligned_cols=26 Identities=8% Similarity=0.245 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
..+...|-+.|..|.+=|..||.||.
T Consensus 20 ~~~sd~LvtkVDDLQD~VE~LRkDV~ 45 (141)
T 3okq_A 20 GDLSDTLLSKVDDLQDVIEIMRKDVA 45 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666777777777777777777776
No 56
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=93.57 E-value=0.12 Score=46.83 Aligned_cols=66 Identities=18% Similarity=0.350 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDM------------ASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVD 68 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV------------~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~ 68 (150)
.+.+..+++.+.++-++|+.+++.+ ..-+.||..||++++++++++..+-.++.++-.|++-|-+.
T Consensus 60 d~N~~~~~~~~ne~~~~Vn~I~~~L~~~GD~~vi~qI~~n~~dI~~Lk~~~~~~~~~l~~~~~~~~ei~~diG~~~~~ 137 (487)
T 2bsg_A 60 DKNIGILKTSLETANSDIKTIQGILDVSGDIEALAQIGINKKDISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAE 137 (487)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHhhHHHHHHHhcchhhhhhhhhhhccchHHHHhhcCccCcc
Confidence 4455666666666666666666533 35567888888888888888877777777777777766644
No 57
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=93.56 E-value=0.22 Score=42.53 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
+.++.|++++..|+..|....+-|..|++.+..+++.|.+|++.|..|++.+.
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777777777777777777777777777777766544
No 58
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=93.52 E-value=0.53 Score=34.19 Aligned_cols=8 Identities=13% Similarity=0.609 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q psy9603 51 IKEDMASI 58 (150)
Q Consensus 51 LK~Dvs~l 58 (150)
|+.++..+
T Consensus 73 L~~ql~~l 80 (94)
T 3jsv_C 73 LQEQLEQL 80 (94)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 59
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=93.46 E-value=0.21 Score=38.14 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGS 43 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~ 43 (150)
|++|+..|.+++++|.+|++||..|.+|...
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455555555555555555555444433
No 60
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=93.42 E-value=0.6 Score=31.13 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 21 VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 21 ~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.+|+.-+..--.++...|+++++|+.-|..|..++..+|
T Consensus 38 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 38 ADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444445566666666666666666666666665
No 61
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=93.41 E-value=0.15 Score=38.10 Aligned_cols=32 Identities=13% Similarity=0.443 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 28 ASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 28 ~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
..+.++|..++..|.++|.++++|..+|+.|+
T Consensus 53 k~~et~i~~~t~~v~t~k~~i~~~e~~vqalq 84 (113)
T 1aa0_A 53 KANETNIASVTQEVNTAKGNISSLQGDVQALQ 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchhhhheeecccccchhhhhhhhHHHH
Confidence 34556666666666666666666666666665
No 62
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=93.35 E-value=0.31 Score=32.05 Aligned_cols=32 Identities=0% Similarity=0.340 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 14 ASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 14 ~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
.+|.+.+..|+.+-..|+..|..|++.+..||
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443
No 63
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.29 E-value=0.2 Score=45.97 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q psy9603 44 IKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 44 LK~DV~~LK~Dvs~lK~Di 62 (150)
|+.-|..+..+|+.|..||
T Consensus 136 LQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 136 LQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444333
No 64
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=93.29 E-value=0.21 Score=34.23 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
|+.|...|..|......|..+...|+..|..|..
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333333333333333
No 65
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=93.26 E-value=0.19 Score=35.31 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
.+..+++.+.+++..+..|+++...++
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~ 30 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELK 30 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333333333
No 66
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=93.14 E-value=0.34 Score=31.30 Aligned_cols=16 Identities=6% Similarity=0.522 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9603 40 DMGSIKDDMGSIKEDM 55 (150)
Q Consensus 40 DV~~LK~DV~~LK~Dv 55 (150)
=|+.|+.+++.|..+|
T Consensus 32 iianlrdeiarlenev 47 (52)
T 3he5_B 32 IIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 67
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.04 E-value=0.19 Score=32.58 Aligned_cols=29 Identities=14% Similarity=0.421 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 25 EDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 25 ~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
+||..||.+++.||..+.+|++-+..|+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 68
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=93.04 E-value=0.38 Score=31.09 Aligned_cols=40 Identities=10% Similarity=0.465 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMG 49 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~ 49 (150)
...|+.||.|--+|..|-..|..=|+.|+.+|+.|..+|+
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444443
No 69
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.00 E-value=0.63 Score=36.34 Aligned_cols=56 Identities=11% Similarity=0.233 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
-|+.|+.+++.+++.|..+++++.+-...+..|+.++..|.-....+.+.+..++.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666666666555555555666666666666555555555555543
No 70
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=93.00 E-value=0.17 Score=33.14 Aligned_cols=33 Identities=15% Similarity=0.387 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
+.+|...+..|.++-..|+..|+.|++.+..||
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444433
No 71
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=92.95 E-value=0.69 Score=38.28 Aligned_cols=55 Identities=4% Similarity=0.257 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGY 65 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGy 65 (150)
+.|..-...++.++.-|.+...||..|+.+|+.|-..|....++|+.|..|-.-.
T Consensus 98 ~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS~ 152 (242)
T 3c9i_A 98 SRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSK 152 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCBS
T ss_pred HHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhhh
Confidence 3344444555666666667777777888888888888888888888888886533
No 72
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=92.85 E-value=0.61 Score=32.63 Aligned_cols=57 Identities=11% Similarity=0.267 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.-+..|++++.+-..+|..||+-+.-=-.|...|-.++-+|.=+-..|.+.++.+|+
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666555566677777766666666777777766664
No 73
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.85 E-value=0.71 Score=34.38 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
|+.|+..|....+-+.....||.+||+.+..+++
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333333344444433333333
No 74
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.70 E-value=0.86 Score=32.48 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
|..||..|..||.|.......+..++.++..+...-..+-++|.+|.
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~ 50 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLE 50 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444444444444433333333333333333333333333333
No 75
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=92.69 E-value=1.4 Score=30.95 Aligned_cols=60 Identities=10% Similarity=0.308 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
+++-|..-+.+|.+|+.==.+|++==..|+.=|+.|+.+.++|.+.|..||..-++|.+-
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777766666766667777778888888888888888888887777653
No 76
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.50 E-value=1.1 Score=32.90 Aligned_cols=19 Identities=0% Similarity=0.359 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSI 23 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~L 23 (150)
+|.+++..|..|..++..+
T Consensus 37 Ei~elrr~iq~L~~el~~l 55 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNV 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=92.49 E-value=0.2 Score=32.49 Aligned_cols=29 Identities=14% Similarity=0.352 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 32 VDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 32 ~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.||..||.++++||+-+..|+..++++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 78
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=92.45 E-value=0.47 Score=42.47 Aligned_cols=25 Identities=4% Similarity=0.299 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 34 MGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 34 V~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+..||+++.+|++.+..+.+.+..+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.44 E-value=0.61 Score=39.62 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
++-.+++..+...+++|+..+++++..||+.-+.+|..+..+...+++.
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 3334444444444555555555555555555555555555544444443
No 80
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=92.42 E-value=0.35 Score=41.33 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
.+++.|.+++..|...|....+-|..|++.+.++++.|..|+..|..|++..
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666566666666666666666666666665555543
No 81
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=92.41 E-value=0.32 Score=36.32 Aligned_cols=32 Identities=13% Similarity=0.412 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy9603 33 DMGSIKEDMGSIKDDMGSIKEDMASIKEDIGG 64 (150)
Q Consensus 33 DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigG 64 (150)
-|..+-++|+.+.+.|..+|.+++++..+|..
T Consensus 51 sVk~~et~i~~~t~~v~t~k~~i~~~e~~vqa 82 (113)
T 1aa0_A 51 SIKANETNIASVTQEVNTAKGNISSLQGDVQA 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccchhhhheeecccccchhhhhhhhHH
Confidence 34444444444455555555555555444443
No 82
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=92.41 E-value=0.26 Score=42.79 Aligned_cols=59 Identities=5% Similarity=0.187 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy9603 6 MGSIKEDMASIKEDMVSIK--------EDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGG 64 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK--------~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigG 64 (150)
-+.++.++.+|+...+.+. +|..+|+..+..||+++.+|++.+..+++++..+=.-|+=
T Consensus 37 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 103 (421)
T 1ses_A 37 VQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444555555555555544 4445566666666666666666666666666555444433
No 83
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=92.40 E-value=0.098 Score=45.46 Aligned_cols=58 Identities=10% Similarity=0.312 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMAS----------IKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~----------LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
-+.++.++.+|+...+.+...|.. |+..+..||+++.+|++.+..+.+++..+=.-|+
T Consensus 39 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 106 (425)
T 2dq3_A 39 RREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIP 106 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345555666666666666655554 3444555555555555555555555554444443
No 84
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.37 E-value=1 Score=31.85 Aligned_cols=51 Identities=14% Similarity=0.268 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
|..||..|..||.+......-+..+..++..+...-..+-++|.+|+..+.
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444555555555544444444444444444444333333333333333333
No 85
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=92.13 E-value=0.99 Score=32.76 Aligned_cols=19 Identities=5% Similarity=0.357 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy9603 42 GSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 42 ~~LK~DV~~LK~Dvs~lK~ 60 (150)
.+|.+++..|+..++.|++
T Consensus 71 e~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 71 EYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp SHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 86
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.13 E-value=1.4 Score=32.68 Aligned_cols=49 Identities=10% Similarity=0.213 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKED----MASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~D----V~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
+.....|+.++.++|+-....+++ ++.|..+++.|+..-.+|+..+..|
T Consensus 9 ~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReL 61 (111)
T 2v66_B 9 QADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554443 4445555555555555555555444
No 87
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=92.12 E-value=0.85 Score=33.29 Aligned_cols=30 Identities=7% Similarity=0.323 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKV 32 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~ 32 (150)
.+.+..|+.+|++|..+...|++.+..|..
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888876653
No 88
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=91.94 E-value=0.35 Score=42.02 Aligned_cols=59 Identities=3% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIK--------VDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK--------~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
.|-.|-++-..++..+..|+..-.++. +|.+.|++.+.+||+++..|++.+..+.+.+-
T Consensus 29 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777777776554 45567777777777777777777777777664
No 89
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=91.90 E-value=1.1 Score=33.27 Aligned_cols=17 Identities=12% Similarity=0.429 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIK 31 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK 31 (150)
.|+.+|..||..+..||
T Consensus 19 ~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 19 RLYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444443333333
No 90
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=91.90 E-value=0.62 Score=31.08 Aligned_cols=33 Identities=6% Similarity=0.177 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
+|++-+..=-+++...|++++.|+..|+.|..+
T Consensus 39 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~e 71 (77)
T 3trt_A 39 DLSEAANRNNDALRQAKQESTEYRRQVQSLTME 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444433
No 91
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=91.67 E-value=0.91 Score=37.58 Aligned_cols=51 Identities=6% Similarity=0.330 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
|..-.+.|+.++.-|.....||..|+.+|..|-.+|+.+.+.|+.|+.|--
T Consensus 100 It~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyV 150 (242)
T 3c9i_A 100 ITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYV 150 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBC
T ss_pred hhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhh
Confidence 344455666666666666666666666666666666666666666666643
No 92
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=91.56 E-value=0.35 Score=33.06 Aligned_cols=41 Identities=10% Similarity=0.394 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
.-|.+|.+-|..|......|..++..|+.+|..|...+..+
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566666666666555555555555555555555544433
No 93
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=91.44 E-value=0.82 Score=40.91 Aligned_cols=58 Identities=7% Similarity=0.107 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHH----HHH-HHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKV---------------------------DMGSI----KED-MGSIKDDMGSIKE 53 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~---------------------------DV~~L----K~D-V~~LK~DV~~LK~ 53 (150)
-+.++.++.+|+...+.+...|..+|. |.+.| ++. +.+||+++..|++
T Consensus 46 ~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~ 125 (484)
T 3lss_A 46 WRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAK 125 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666544 56667 777 8888888888888
Q ss_pred HHHHhhhhcC
Q psy9603 54 DMASIKEDIG 63 (150)
Q Consensus 54 Dvs~lK~Dig 63 (150)
.+..+.+.+-
T Consensus 126 ~~~~~~~~~~ 135 (484)
T 3lss_A 126 EAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777763
No 94
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.38 E-value=1 Score=33.09 Aligned_cols=13 Identities=15% Similarity=0.593 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy9603 43 SIKDDMGSIKEDM 55 (150)
Q Consensus 43 ~LK~DV~~LK~Dv 55 (150)
.|...+..+|.||
T Consensus 88 ~lE~eL~~~r~em 100 (131)
T 3tnu_A 88 SVEEQLAQLRCEM 100 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 95
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.26 E-value=1.1 Score=33.29 Aligned_cols=15 Identities=7% Similarity=0.348 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhh
Q psy9603 46 DDMGSIKEDMASIKE 60 (150)
Q Consensus 46 ~DV~~LK~Dvs~lK~ 60 (150)
++...|+.+++.|+.
T Consensus 90 ~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 333444444444443
No 96
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=91.05 E-value=0.78 Score=34.31 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q psy9603 41 MGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 41 V~~LK~DV~~LK~Dvs~lK~Di 62 (150)
++.-|+=|+.++..|..+|+.+
T Consensus 107 i~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 107 LQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555666666666666654
No 97
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=90.84 E-value=0.72 Score=37.21 Aligned_cols=35 Identities=6% Similarity=0.232 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMG 42 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~ 42 (150)
.|..++..|.+.+....+.|..||+-++.+|+++.
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444444444433444444444444444443
No 98
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.71 E-value=1.8 Score=31.63 Aligned_cols=30 Identities=13% Similarity=0.439 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q psy9603 23 IKEDMASIKVDMGS-------IKEDMGSIKDDMGSIK 52 (150)
Q Consensus 23 LK~DV~~LK~DV~~-------LK~DV~~LK~DV~~LK 52 (150)
+..|+..||.||.. |-..|..|++++.-||
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455544432 3444555555555554
No 99
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=90.63 E-value=0.15 Score=44.25 Aligned_cols=58 Identities=9% Similarity=0.402 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSI----------KEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L----------K~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
.|-.|-++-.+++..+.+|+..-.++...|..+ ++.+.+||+++..|++.+..+.+.+
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777777777777776666644 3344445555555555555554444
No 100
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=90.53 E-value=1.2 Score=33.67 Aligned_cols=39 Identities=3% Similarity=0.221 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy9603 27 MASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGY 65 (150)
Q Consensus 27 V~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGy 65 (150)
|.+|+.+|..|+..+.....+|..|+.+...++.+|.--
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 666777777777777777777777777777777666543
No 101
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=90.44 E-value=0.73 Score=33.03 Aligned_cols=32 Identities=6% Similarity=0.240 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+|..++..|..++..|+++.+.++.++..+|+
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 102
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=90.43 E-value=2.7 Score=28.86 Aligned_cols=34 Identities=6% Similarity=0.232 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
.|+..+..|+..|..|...+..+.+.+.++|..+
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666543
No 103
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=90.38 E-value=1.6 Score=32.62 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 34 MGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 34 V~~LK~DV~~LK~DV~~LK~Dv 55 (150)
|+.=|.=|++++..|..||+.|
T Consensus 107 i~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 107 LQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444443
No 104
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=90.29 E-value=1.4 Score=37.92 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
+..|.+.-..||+-|.+|++-...|.+|+..-+.|.-+|..+|+.||-|+-.|+
T Consensus 200 ~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~ 253 (373)
T 3hhm_B 200 IQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLR 253 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 344444445555555555554455555555544444444444444444444443
No 105
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=90.18 E-value=0.48 Score=33.75 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 36 SIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 36 ~LK~DV~~LK~DV~~LK~Dv 55 (150)
.=|.=|++|+..+..||.++
T Consensus 72 ~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 72 GREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 106
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.14 E-value=0.49 Score=34.71 Aligned_cols=33 Identities=9% Similarity=0.390 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
++...|++|.+++.-|..|..++..||.=.+.|
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344445555555555555555555554433333
No 107
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.93 E-value=2.2 Score=33.73 Aligned_cols=49 Identities=10% Similarity=0.367 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
+.+|+..|..|.+|+..+|+=.+.+..|...|-+.|+.|...-++|..|
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid 140 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEID 140 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444445555555555555555555555555555555555544444444
No 108
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=89.78 E-value=3.1 Score=28.89 Aligned_cols=34 Identities=9% Similarity=0.333 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
.|+..+..|...+..|...+..+.+.+.++|..+
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666666554
No 109
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.77 E-value=3.2 Score=30.44 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhhh
Q psy9603 49 GSIKEDMASIKED 61 (150)
Q Consensus 49 ~~LK~Dvs~lK~D 61 (150)
..|...++.+|.|
T Consensus 87 ~~lE~eL~~~r~e 99 (131)
T 3tnu_A 87 GSVEEQLAQLRCE 99 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 110
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=89.61 E-value=4 Score=28.65 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKED 26 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~D 26 (150)
.+++.|+.+|..|+++|..|+.-
T Consensus 12 ~~v~~I~~~i~~i~~~v~~l~~~ 34 (127)
T 1ez3_A 12 EQVEEIRGFIDKIAENVEEVKRK 34 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777766666543
No 111
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.54 E-value=2.1 Score=36.26 Aligned_cols=52 Identities=8% Similarity=0.044 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
.+++.+...+++|+..+++++..||++-+.+|..+.++...+...+....++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 3444455555566666666666666666666666666666665555544444
No 112
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=89.44 E-value=3.6 Score=28.71 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 16 IKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 16 LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
...-+..|-.-+..|+.||..|+-.|.++--++..|++...++=.|+
T Consensus 18 ~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 18 HSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666667777777777777777777777766666555544
No 113
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=89.30 E-value=2.3 Score=34.24 Aligned_cols=41 Identities=10% Similarity=0.306 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
-|+.|..++..|.+.+....+.|..||+.++.||+++...+
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 35555555555555555555555555555555555554443
No 114
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.21 E-value=1.2 Score=40.98 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
+|+.-|..||..|.+..+-|..|+.-|.++..+|.-|..||
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433444444444444444444444443
No 115
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=89.20 E-value=2.4 Score=37.49 Aligned_cols=19 Identities=11% Similarity=0.417 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDM 20 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv 20 (150)
|+.||.+|+..|.+|.+--
T Consensus 36 V~~~l~~L~~~l~~isn~T 54 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKT 54 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhh
Confidence 5677777777777774443
No 116
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=89.03 E-value=0.51 Score=39.42 Aligned_cols=48 Identities=15% Similarity=0.407 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy9603 19 DMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYG 66 (150)
Q Consensus 19 Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg 66 (150)
++.+|+..+..|..-...|++...++++.+..||+++..|++-...||
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iG 102 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYG 102 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 355666666666666666777777777777777777777776554444
No 117
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=88.92 E-value=1.3 Score=38.44 Aligned_cols=62 Identities=5% Similarity=0.154 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYG 66 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg 66 (150)
....|++++.+|++.+.+|++.+.+++.++..+++.+.+....-..|-..+.++|.-|..|=
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~v 65 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFC 65 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34678888888888888888888888888888888877666666788889999998887774
No 118
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.83 E-value=3.4 Score=32.19 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
...|..|+.+++.++..|..|+.++..-...+..|+.++.+|....+.+.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE 116 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQ 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555555555555554443
No 119
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=88.74 E-value=1.2 Score=31.14 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
+..+++++..|+++...+++.+.+++.-+..|
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444333333
No 120
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=88.58 E-value=1.9 Score=37.16 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
.+.-+.||..|++|++-...|.+|+..-+.|.-+|..+|..||-|+..|+.
T Consensus 204 ~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 204 MHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 344455666666666666666666665555555555555555555555544
No 121
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=88.54 E-value=2.1 Score=37.55 Aligned_cols=29 Identities=7% Similarity=0.193 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 33 DMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 33 DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
-|..|++.+.++++-|..|+..|..|.+-
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555555543
No 122
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.33 E-value=1.9 Score=32.58 Aligned_cols=40 Identities=5% Similarity=0.238 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 20 MVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 20 v~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
|.+|+.+|..|++-+...-.+|..|+.+...|+.++..-|
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 5555555555555555555555555555555555555444
No 123
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=88.14 E-value=2.1 Score=27.21 Aligned_cols=26 Identities=8% Similarity=0.514 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 34 MGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 34 V~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.+.|.++...|...++.||+.++.+|
T Consensus 22 laaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444444443
No 124
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=87.78 E-value=2.6 Score=31.65 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
+..+-+.+.+|+.+|..|++.|.+|+
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~ 29 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVD 29 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 125
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=87.49 E-value=2.2 Score=30.29 Aligned_cols=20 Identities=5% Similarity=0.290 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 24 KEDMASIKVDMGSIKEDMGS 43 (150)
Q Consensus 24 K~DV~~LK~DV~~LK~DV~~ 43 (150)
+..|..|..-|..+|.-|.+
T Consensus 57 ~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 57 AKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 126
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=87.47 E-value=2.9 Score=32.92 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
.+.|+.-|.+|.+-...|.+|+...+.|.-+|-..|..||-|+..|
T Consensus 98 ~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL 143 (170)
T 3l4q_C 98 SERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQL 143 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3344555555555555555555555555444444444444444444
No 127
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=87.40 E-value=1.1 Score=26.97 Aligned_cols=25 Identities=48% Similarity=0.772 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
..||++-+.+.+++..+|++|+.+|
T Consensus 5 aaikeeqaaieeeiqaikeeiaaik 29 (36)
T 1bb1_B 5 AAIKEEQAAIEEEIQAIKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 128
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=87.12 E-value=3 Score=30.71 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIK 38 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK 38 (150)
+..++.+++..++.+..|++.|.+||.-|..|.
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554444
No 129
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=87.05 E-value=1.8 Score=26.52 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGS 36 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~ 36 (150)
+|++-|.+|...-++|+..|+.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~R 26 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVAR 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3333333333333333333333
No 130
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=87.04 E-value=2.5 Score=36.47 Aligned_cols=53 Identities=15% Similarity=0.325 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
+++.|+.|++++.+|++++..++..+.+|++-......--..|-.++..||..
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35566666666666666666666666666655544444444455555555443
No 131
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=87.01 E-value=0.46 Score=43.03 Aligned_cols=53 Identities=25% Similarity=0.422 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhcCCC
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMG-----------SIKEDMASIKEDIGGY 65 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~-----------~LK~Dvs~lK~DigGy 65 (150)
|..-+.||..||+++++++++++.+-.++.+|-.|+. .+..|+.-+|..++-|
T Consensus 96 I~~n~~dI~~Lk~~~~~~~~~l~~~~~~~~ei~~diG~~~~~~d~~~rTV~~DI~~IK~elG~Y 159 (487)
T 2bsg_A 96 IGINKKDISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQY 159 (487)
T ss_pred HHhhHHHHHHHhcchhhhhhhhhhhccchHHHHhhcCccCcccCCCccccchhHHHHHHHhccC
Confidence 3344445555555555555555555555556655552 4577888888888877
No 132
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=86.94 E-value=5.7 Score=27.20 Aligned_cols=45 Identities=18% Similarity=0.485 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKED----MASIKVDMGSIKEDMGSIKDDMG 49 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~D----V~~LK~DV~~LK~DV~~LK~DV~ 49 (150)
+|.+++...+.|..-+..+..- +..++.-|..|...+..+|+||.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666555555555444332 23334444444444444444443
No 133
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=86.87 E-value=3.3 Score=30.47 Aligned_cols=34 Identities=12% Similarity=0.347 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
+..+..+++..|+.|.+|++.|+.||.-|..|..
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEk 39 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEI 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666653
No 134
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=86.66 E-value=1.4 Score=30.58 Aligned_cols=13 Identities=8% Similarity=0.284 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKE 18 (150)
Q Consensus 6 i~~Lk~dv~~LK~ 18 (150)
|+.|+...+.|..
T Consensus 5 ie~L~~q~~~Le~ 17 (86)
T 1x8y_A 5 LSQLQCQLAAKEA 17 (86)
T ss_dssp -------CTTHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 135
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=86.64 E-value=5.3 Score=29.18 Aligned_cols=51 Identities=4% Similarity=0.121 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
|-..|.+.....++||..|++.+.+|+..+...-.=+.+|......|+.+.
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~ 55 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKH 55 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 344555555566667777777777777666554444445544444555443
No 136
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=86.57 E-value=6 Score=27.09 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKED 40 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~D 40 (150)
|+.|...|..-...|..-...|.+.+..|+..|+.|..-
T Consensus 9 i~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 9 FSFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566777777777777777777777777777777777665
No 137
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=86.36 E-value=1.2 Score=32.62 Aligned_cols=34 Identities=6% Similarity=0.374 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
|+.+|..||+|+. .++.|++.|..|++++..|++
T Consensus 4 l~~~~~~l~~~~~----~~~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 4 LNAQIPELKSDLE----KASALNTKIRALQGSLENMSK 37 (182)
T ss_dssp ---------CHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544 334455555555555555554
No 138
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.29 E-value=4.3 Score=31.98 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy9603 5 DMGSIKEDMAS 15 (150)
Q Consensus 5 Di~~Lk~dv~~ 15 (150)
|+..|+..+.+
T Consensus 70 e~~~LQa~L~q 80 (168)
T 3o0z_A 70 DYYQLQAILEA 80 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334433333
No 139
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=86.15 E-value=3.1 Score=26.48 Aligned_cols=11 Identities=9% Similarity=0.540 Sum_probs=4.6
Q ss_pred HHHHHHHHHhh
Q psy9603 49 GSIKEDMASIK 59 (150)
Q Consensus 49 ~~LK~Dvs~lK 59 (150)
+-|..+++.|+
T Consensus 34 aylekeianlr 44 (49)
T 3he5_A 34 AYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 140
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=86.11 E-value=1.7 Score=34.33 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
..|.+.-..|++-+.+|++=...|.+|+...+.|.-+|-..|++||-|+..|
T Consensus 92 ~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL 143 (170)
T 3l4q_C 92 QRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQL 143 (170)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3344444455555555555555555555555555555555555555555444
No 141
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=86.01 E-value=0.85 Score=38.06 Aligned_cols=49 Identities=16% Similarity=0.483 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCCCCCC
Q psy9603 26 DMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVDKRGYGV 74 (150)
Q Consensus 26 DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~~~gYg~ 74 (150)
++.+|+..+..|.+...-|++....+++++..||+.+--+..||-.||.
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGt 103 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGV 103 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 4667777777887777778888888888888888888888888877764
No 142
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=85.91 E-value=0.41 Score=40.82 Aligned_cols=45 Identities=7% Similarity=0.230 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
++|..|+.-|..+.+-|..|++.+..+++.|.+|++.|..|...+
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444555555555555554443
No 143
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=85.85 E-value=0.82 Score=37.43 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 24 KEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 24 K~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
...++.|-+||..||.||+.+---|+.|.+.|+.|.+
T Consensus 3 ~~~v~~~st~v~NlkssVS~~~l~ls~L~~Rv~~le~ 39 (211)
T 2vrs_A 3 QTTVDGNSTAISNLKSDISSNGLAITDLQDRVKSLES 39 (211)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eehhhhchhhhhhhhhhhhhhhhhhhhHHHHHHHHhc
Confidence 3445555566666666666666666666666666653
No 144
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A
Probab=85.84 E-value=0.15 Score=41.97 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=0.0
Q ss_pred CCCCCC
Q psy9603 114 YGVDKR 119 (150)
Q Consensus 114 Yg~p~~ 119 (150)
||.|..
T Consensus 70 yg~p~~ 75 (219)
T 1dx0_A 70 WGQPHG 75 (219)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 443333
No 145
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=85.58 E-value=5.2 Score=32.89 Aligned_cols=7 Identities=0% Similarity=0.487 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy9603 5 DMGSIKE 11 (150)
Q Consensus 5 Di~~Lk~ 11 (150)
||+.++.
T Consensus 45 ~le~lr~ 51 (273)
T 3s84_A 45 NLRELQQ 51 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 146
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=85.23 E-value=2 Score=32.40 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
|..+-++|..|+++|..|+++|..|+
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~ 63 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVK 63 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 147
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=85.20 E-value=3.8 Score=28.97 Aligned_cols=47 Identities=13% Similarity=0.307 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.|.++++.+|++--.+......-+.-..+|-.+|..||+.|.+|+++
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35555566666665555555555666666667777777777776654
No 148
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=85.10 E-value=3.5 Score=29.19 Aligned_cols=47 Identities=11% Similarity=0.314 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
.|.++++.++++.-.+.+.+.+-+.-...|-.+|..|++.+..|+.+
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45666666666666666666555555555555555555555555443
No 149
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=85.08 E-value=2.4 Score=30.04 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 40 DMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 40 DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
||+.=|.=|+.++..+..||++.
T Consensus 69 EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 69 DVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666777777776653
No 150
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=85.08 E-value=0.3 Score=39.97 Aligned_cols=57 Identities=5% Similarity=0.083 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhc
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDD-------MGSIKEDMASIKEDI 62 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D-------V~~LK~Dvs~lK~Di 62 (150)
++++.++.+++++.+..+.++..+|++.++.||+++.+..++ +.+|...|+.+|=++
T Consensus 143 ~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~w~~ 206 (250)
T 2ve7_C 143 YMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWEY 206 (250)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhceeec
Confidence 444445555555555555555555555555555555555444 466777777776554
No 151
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=84.79 E-value=2.2 Score=32.16 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKED 26 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~D 26 (150)
++++.|+++|..|++.|..|+.=
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l~~~ 65 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAVKKK 65 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555443
No 152
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=84.54 E-value=8.3 Score=26.93 Aligned_cols=54 Identities=13% Similarity=0.353 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.|++.+..-+.+|..||.==.+||.-=+-|++=|+.|+++.+.|...|..+|..
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777788888888888888888888877753
No 153
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.52 E-value=6.5 Score=27.65 Aligned_cols=35 Identities=14% Similarity=0.431 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 26 DMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 26 DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.|..|+.-|..+..|-+.|.-++..|..|+..+|.
T Consensus 57 ~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 57 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555666655554
No 154
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=84.49 E-value=4.9 Score=30.98 Aligned_cols=22 Identities=5% Similarity=0.229 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDM 34 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV 34 (150)
...|=+.|.-|..=|..||.||
T Consensus 23 sd~LvtkVDDLQD~VE~LRkDV 44 (141)
T 3okq_A 23 SDTLLSKVDDLQDVIEIMRKDV 44 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333444444444444443
No 155
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=84.38 E-value=10 Score=27.96 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIK 24 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK 24 (150)
|+.-|++|...+--+..+|++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~sQLk 26 (107)
T 2wps_A 4 IEDKIEEILSKIYHIENEIARIK 26 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666665555
No 156
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=84.21 E-value=4.9 Score=25.58 Aligned_cols=41 Identities=10% Similarity=0.312 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 14 ASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 14 ~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
++|.++|++|..+-..||.-----|.=|+-|..+++.|+..
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433322233334444444444443
No 157
>2ynz_A General control protein GCN4, putative inner MEMB protein; membrane protein, DALL domain, DALL2, trimeric autotransport adhesin, TAA; 1.40A {Saccharomyces cerevisiae} PDB: 1uo2_A 1gcl_A 2ccn_A 1uo0_A 1unz_A 1uny_A 2bni_A* 1u9h_A*
Probab=84.17 E-value=7.1 Score=30.52 Aligned_cols=52 Identities=12% Similarity=0.259 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
|+.-|++|..+|--|...|..+.+-+-....-|+..-.+++.+.+.|..|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~i~~~GSQL~~tn~~Va~nt~~ia~vn~~i~~l~~ 55 (154)
T 2ynz_A 4 IEDKIEEILSKIYHIENEIARIKKLIYETNQKVDQNTSAIADINTSITNLGT 55 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHhccchhhhhhhhhcccC
Confidence 4555666666666666666666666666666666666666666555555543
No 158
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.11 E-value=6.8 Score=28.41 Aligned_cols=29 Identities=17% Similarity=0.488 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDM 34 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV 34 (150)
++.+++.+..|+..+..+...+..|+.+.
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44455555555555555555444444333
No 159
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=84.09 E-value=9.1 Score=27.04 Aligned_cols=20 Identities=5% Similarity=0.257 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK 31 (150)
|-..|.++|+.||--|++|-
T Consensus 20 ~~E~L~qEi~~Lr~kv~elE 39 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELE 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 160
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=83.79 E-value=0.63 Score=39.70 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
|-++|..|++.|..+.+.|..|++.+.++++.|..|++.|.+|..-+
T Consensus 2 ~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp --------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566667777777777777777777777777777777777666543
No 161
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=83.78 E-value=3.3 Score=29.26 Aligned_cols=36 Identities=0% Similarity=0.242 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 22 SIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 22 ~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
++..-+.+|..+-..|+..|..|+.++..||.=+..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555544443
No 162
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.63 E-value=4.1 Score=28.03 Aligned_cols=53 Identities=4% Similarity=0.188 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.|.+.|..|..-++..-.-|.+|..=|..-...|..|+.-+..|.+.+.++..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555555555555555555555555555555555555555555555543
No 163
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=83.52 E-value=4.6 Score=35.44 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 41 MGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 41 V~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
|..|.+.+..++..|..|++.|.
T Consensus 107 i~~l~~~~~~~~~~i~~l~~~i~ 129 (409)
T 1m1j_C 107 IQQLTDMHIMNSNKITQLKQKIA 129 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444445555555443
No 164
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=83.42 E-value=4 Score=25.91 Aligned_cols=19 Identities=5% Similarity=0.501 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 30 IKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 30 LK~DV~~LK~DV~~LK~DV 48 (150)
|..+...|....+.||..+
T Consensus 25 leselqalekklaalkskl 43 (48)
T 1g6u_A 25 LESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 165
>2ynz_A General control protein GCN4, putative inner MEMB protein; membrane protein, DALL domain, DALL2, trimeric autotransport adhesin, TAA; 1.40A {Saccharomyces cerevisiae} PDB: 1uo2_A 1gcl_A 2ccn_A 1uo0_A 1unz_A 1uny_A 2bni_A* 1u9h_A*
Probab=83.37 E-value=5.3 Score=31.23 Aligned_cols=64 Identities=14% Similarity=0.279 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccC
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGVDK 69 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~~~ 69 (150)
|+.|+++|++|-..|--+...|+.+..-+-....-|+..-++++.+...|..|.+|---|--..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~~~GSQL~~tn~~Va~nt~~ia~vn~~i~~l~~dAL~wd~~~ 64 (154)
T 2ynz_A 1 MKQIEDKIEEILSKIYHIENEIARIKKLIYETNQKVDQNTSAIADINTSITNLGTDALSWDDEE 64 (154)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCEEETTT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHhccchhhhhhhhhcccCCceEeeCCC
Confidence 5678889999999999999999999999999999999999999999999999988876665443
No 166
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=83.33 E-value=1.3 Score=32.32 Aligned_cols=19 Identities=0% Similarity=0.347 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 35 GSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 35 ~~LK~DV~~LK~DV~~LK~ 53 (150)
..|+..|..|+..+..|+.
T Consensus 19 ~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 19 SALNTKIRALQGSLENMSK 37 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444
No 167
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=83.05 E-value=1.8 Score=26.04 Aligned_cols=26 Identities=12% Similarity=0.337 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
|+.|.+.|.+|-..-+.|..+|..||
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444444433
No 168
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.80 E-value=4.3 Score=43.83 Aligned_cols=56 Identities=13% Similarity=0.316 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
|+.++.++++++..++.+..+++.+.+|..-++.||++-+++.++...||.++...
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555443
No 169
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=82.79 E-value=4.1 Score=36.01 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 33 DMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 33 DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
+|..|+.+|..+..+|.-|..||
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 170
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=82.76 E-value=7.7 Score=28.16 Aligned_cols=25 Identities=4% Similarity=0.264 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDM 27 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV 27 (150)
+..|+.|..+-..|++.+..|...+
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 171
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=82.47 E-value=0.86 Score=32.08 Aligned_cols=32 Identities=9% Similarity=0.230 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 31 KVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 31 K~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
+++|..||+-|.+|-+.++.|+.+-+.||+-.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45555666666666666666666666666543
No 172
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=82.39 E-value=5.2 Score=35.97 Aligned_cols=24 Identities=8% Similarity=0.289 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKE 25 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~ 25 (150)
|+.||++|+..|.+|.+--++.++
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~ 116 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQ 116 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHH
Confidence 577888888888877555443333
No 173
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=82.37 E-value=3.9 Score=35.81 Aligned_cols=28 Identities=7% Similarity=0.395 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
.+++.|..||..|+..+..++.++...+
T Consensus 292 v~~~~l~~~~~~L~~~l~~v~~~l~~~~ 319 (483)
T 2j1d_G 292 VNMTELDKEISTLRSGLKAVETELEYQK 319 (483)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666666655544
No 174
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=82.33 E-value=1.9 Score=27.50 Aligned_cols=8 Identities=25% Similarity=0.709 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy9603 5 DMGSIKED 12 (150)
Q Consensus 5 Di~~Lk~d 12 (150)
||+.+|++
T Consensus 8 dle~~KqE 15 (45)
T 1use_A 8 DLQRVKQE 15 (45)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34433333
No 175
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=81.99 E-value=4.2 Score=28.67 Aligned_cols=29 Identities=0% Similarity=0.349 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 18 EDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 18 ~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
..+..|..+=..|+..|..|+.++..||+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444443
No 176
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=81.92 E-value=11 Score=29.26 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIK----------VDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK----------~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.++..++.++...+.++...+.+...++ +++...+.++...+..+..++..+..++.+
T Consensus 60 ~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~ 127 (277)
T 2f1m_A 60 ATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARIN 127 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555443322 344444555555555555555555444443
No 177
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=81.88 E-value=7.5 Score=34.77 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKE 18 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~ 18 (150)
|+.||++|+..|.+|.+
T Consensus 98 V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhh
Confidence 56667777776666653
No 178
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=81.66 E-value=6.5 Score=32.63 Aligned_cols=25 Identities=8% Similarity=0.380 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
.+++.|..+|..|+.++..++.++.
T Consensus 210 vs~~~l~~~l~~l~~~~~~~~~~l~ 234 (340)
T 1v9d_A 210 VSAENLQKSLDQMKKQIADVERDVQ 234 (340)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666654
No 179
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A
Probab=81.63 E-value=0.29 Score=40.30 Aligned_cols=8 Identities=38% Similarity=0.887 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q psy9603 120 GYGVDKRG 127 (150)
Q Consensus 120 gyg~~~~g 127 (150)
|||-|..|
T Consensus 69 Gyg~p~~G 76 (219)
T 1dx0_A 69 GWGQPHGG 76 (219)
T ss_dssp --------
T ss_pred CCCCCCCC
Confidence 44444433
No 180
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=81.30 E-value=9.8 Score=25.41 Aligned_cols=24 Identities=4% Similarity=0.052 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKVD 33 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~D 33 (150)
..+...|..||..-+..|..+..-
T Consensus 42 l~~h~~l~~ei~~~~~~v~~v~~~ 65 (118)
T 3uul_A 42 FATHETFMMELSAHQSSVGSVLQA 65 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555544433
No 181
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=81.18 E-value=3.5 Score=30.45 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIK 38 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK 38 (150)
.|...|..+.++|+.|..+|..++.+++.+|
T Consensus 73 ald~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 73 ALNTSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333
No 182
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=80.65 E-value=6.2 Score=29.55 Aligned_cols=58 Identities=9% Similarity=0.236 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHhhhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKV-----DMGSIKEDMGSIKDDM----GSIKEDMASIKED 61 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~-----DV~~LK~DV~~LK~DV----~~LK~Dvs~lK~D 61 (150)
..++.|+.+|..|++.|..|+.=...+.. |...++.++..|-+++ ..++..+..|++.
T Consensus 9 ~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~ 75 (196)
T 1fio_A 9 NKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD 75 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666666666666666655554332 2234444444443333 4445555655554
No 183
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=80.57 E-value=13 Score=27.39 Aligned_cols=57 Identities=11% Similarity=0.427 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDM----ASI--------KVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV----~~L--------K~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+.+||++|+++++....-+..-+.-+ ... |+=+..=+..|+.|++-++.||.-|++.
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889888887777665433332 222 2222333444555555555555555443
No 184
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=80.32 E-value=7.3 Score=27.63 Aligned_cols=29 Identities=7% Similarity=0.326 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 25 EDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 25 ~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
++|..-+..|..|.+-|..+|.-|..||.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444444444
No 185
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=80.10 E-value=11 Score=25.09 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK 31 (150)
.+...|..||..-+..|..+.
T Consensus 43 ~~h~~l~~ei~~~~~~v~~~~ 63 (119)
T 3uun_A 43 HTHEGYMMDLTAHQGRVGNIL 63 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 333444444444444444443
No 186
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=79.92 E-value=2 Score=35.09 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 18 EDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 18 ~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
..++.+.+||+.||.||+.+---|+.|.+-|..|+
T Consensus 4 ~~v~~~st~v~NlkssVS~~~l~ls~L~~Rv~~le 38 (211)
T 2vrs_A 4 TTVDGNSTAISNLKSDISSNGLAITDLQDRVKSLE 38 (211)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhchhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34444455555555555555555555555555554
No 187
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=79.74 E-value=7.9 Score=34.60 Aligned_cols=29 Identities=7% Similarity=0.275 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 33 DMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 33 DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.|..|+..+..|++-|..|+..+..+.+.
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555566666666666666655443
No 188
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=79.67 E-value=16 Score=28.38 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDM 20 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv 20 (150)
++|+++++.++.+.+.++
T Consensus 17 ~~D~~s~~~eleEnqeEL 34 (167)
T 4gkw_A 17 KQDTESLQKQLEENQEEL 34 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555444443
No 189
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=79.45 E-value=7 Score=26.80 Aligned_cols=53 Identities=9% Similarity=0.288 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
+.+.|..|+..++-...-|.+|-.=|......|..|+..+..|.+-+..+...
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34567777777777777777777777777777777777777777766666643
No 190
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=79.43 E-value=3.7 Score=29.79 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASI 30 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~L 30 (150)
.++.|+.+|+++++++..++.|+..+
T Consensus 3 nl~~i~~Ei~~~~~~~~~~~~~i~ai 28 (95)
T 3k4t_A 3 NLNQIQKEVSEILSDQKSMKADIKAI 28 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666543
No 191
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=79.36 E-value=3.4 Score=24.95 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
|+.|.+.|.+|-..-..|..+|+.||
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55555555555555555555554444
No 192
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=79.35 E-value=2.5 Score=28.59 Aligned_cols=30 Identities=7% Similarity=0.255 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
.|+..+..|+.++..|+..+..|+..++.|
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555443
No 193
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=79.28 E-value=15 Score=28.61 Aligned_cols=44 Identities=7% Similarity=0.308 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 10 KEDMASIKEDMVSIKEDMASIK-------VDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK-------~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
..++..|++++...+.++..|- .-|..|-++|++|++++.....
T Consensus 84 r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 84 YTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555443 2344555555555555544443
No 194
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=78.86 E-value=2.8 Score=28.33 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 24 KEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 24 K~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
+..+..|+.++..||..+..|++
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 195
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=78.75 E-value=13 Score=25.49 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVD 33 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~D 33 (150)
+|+++||.+|+.|+.--.++|.|+--|-+|
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEd 32 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAED 32 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 566666666666666666666655544433
No 196
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=78.71 E-value=3.8 Score=34.36 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDM 27 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV 27 (150)
|.+.|+..-..-|+++..||+||
T Consensus 4 ~~~~~~~~~~~y~~~i~~ik~~v 26 (297)
T 3pev_B 4 NFDKISKMFWHYKDKIAQIKQDI 26 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655556666666666665
No 197
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=78.48 E-value=8.1 Score=26.63 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 22 SIKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 22 ~LK~DV~~LK~DV~~LK~DV~~L 44 (150)
.+..-|+.|...+..+|.|++..
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333
No 198
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=78.21 E-value=15 Score=29.49 Aligned_cols=32 Identities=9% Similarity=0.371 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 31 KVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 31 K~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
+.+....+.++..++..+..++..+..++..+
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAETNL 152 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555556666666666666655554
No 199
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=78.03 E-value=3.9 Score=24.68 Aligned_cols=26 Identities=8% Similarity=0.302 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
|+.|.+.|.+|-..-..|...|..||
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44455555554444444444444433
No 200
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=77.97 E-value=6.2 Score=28.65 Aligned_cols=30 Identities=27% Similarity=0.446 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDM 41 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV 41 (150)
.++++..+|.+++++...||.||..+=+-+
T Consensus 3 nl~~i~~Ei~~~~~~~~~~~~~i~aiL~~~ 32 (95)
T 3k4t_A 3 NLNQIQKEVSEILSDQKSMKADIKAILELL 32 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666666666666555444
No 201
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=77.75 E-value=10 Score=26.18 Aligned_cols=38 Identities=11% Similarity=0.390 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 21 VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 21 ~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
..|++.+..++..|..|.+.+..+.+.+..+|..+..+
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666666666666554
No 202
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=77.54 E-value=6.2 Score=27.24 Aligned_cols=28 Identities=0% Similarity=0.258 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 32 VDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 32 ~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.-+..|..+-..|+..|..|+.++..||
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 203
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=77.54 E-value=2 Score=30.21 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 24 KEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 24 K~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
+++|..||+-|.+|-+.++.|..+-+.||.-.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555555555555555555555665543
No 204
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=77.28 E-value=13 Score=30.57 Aligned_cols=14 Identities=0% Similarity=0.216 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIK 17 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK 17 (150)
++++.|+..|+.+-
T Consensus 66 ~~~eelr~kL~p~~ 79 (273)
T 3s84_A 66 TQAEQLRRQLTPYA 79 (273)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 34444444444333
No 205
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=77.23 E-value=11 Score=30.36 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
|..+-++|.+++.+|..|++.|.+|+
T Consensus 30 m~~F~~~v~~I~~~I~~I~~~v~~l~ 55 (267)
T 1dn1_B 30 MDEFFEQVEEIRGFIDKIAENVEEVK 55 (267)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554443
No 206
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=77.18 E-value=5.3 Score=23.97 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
|+.|.+.|.+|-+.-..|..+|+.||
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555555555554444444444
No 207
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=77.04 E-value=3.9 Score=24.97 Aligned_cols=22 Identities=9% Similarity=0.397 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
+.|.++|.+|-.....|...|.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~ 25 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVA 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444433333333333
No 208
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=76.96 E-value=19 Score=28.02 Aligned_cols=53 Identities=6% Similarity=0.223 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIK-------EDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK-------~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.|++=+++.+.++..|++++...+.++..|- +.|..|-++|..|+.++.....
T Consensus 75 ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 75 TAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666677777777777766664 3556666777777777766543
No 209
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=76.75 E-value=14 Score=28.41 Aligned_cols=51 Identities=10% Similarity=0.324 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
|+.+|..|.+++..-|.-...+..++...=.++..|..+.-.|...|+.||
T Consensus 103 LEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 103 LEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 333333343333333333334444444333444444444444444444443
No 210
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=76.74 E-value=0.57 Score=34.20 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy9603 37 IKEDMGSIKDD 47 (150)
Q Consensus 37 LK~DV~~LK~D 47 (150)
||.-|..-++|
T Consensus 60 L~aQ~~iY~~D 70 (96)
T 3fx0_A 60 LKAQADIYKAD 70 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 211
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=76.58 E-value=14 Score=27.96 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMAS 29 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~ 29 (150)
.+.++|.+|+.+|..|.+.|.+
T Consensus 44 ef~~~ve~i~~~i~~i~~~v~e 65 (279)
T 3c98_B 44 EFFEQVEEIRGFIDKIAENVEE 65 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 212
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=76.31 E-value=5.7 Score=30.05 Aligned_cols=64 Identities=11% Similarity=0.427 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-----------HHHHHH----------HHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIK-----EDMASIKVDMGSIKEDMGSIK-----------DDMGSI----------KEDM 55 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK-----~DV~~LK~DV~~LK~DV~~LK-----------~DV~~L----------K~Dv 55 (150)
+|++|..|.+.+..++.-+..++ +=|++++.+++.|-..|+.|| +++..| ..||
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l~~lpFsR~iTK~EQADm 87 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADM 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHSCSEEEECCHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCccccccHHHHHhH
Confidence 37788888887777765543321 123344444444444444444 233222 4577
Q ss_pred HHhhhhcCCC
Q psy9603 56 ASIKEDIGGY 65 (150)
Q Consensus 56 s~lK~DigGy 65 (150)
-.||..|.|+
T Consensus 88 GkLKKSVrGL 97 (123)
T 2lf0_A 88 GKLKKSVRGL 97 (123)
T ss_dssp HHHHHHTTSC
T ss_pred HHHhhcccce
Confidence 7788777765
No 213
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=76.26 E-value=5.8 Score=23.79 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASI 30 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~L 30 (150)
|+.|.+.|.+|-.....|..+|..|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444444444444433
No 214
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=76.16 E-value=13 Score=24.28 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
|+.|...|..-...|..-...|.+.+..|+..|+.|
T Consensus 3 i~v~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l 38 (94)
T 3fav_B 3 QQWNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKL 38 (94)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555544
No 215
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.12 E-value=2.2 Score=37.29 Aligned_cols=36 Identities=6% Similarity=0.255 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 24 KEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 24 K~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
..++..||.++..|+.+...+++.+..+++.+..+|
T Consensus 38 e~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~ 73 (434)
T 4b4t_M 38 DNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNR 73 (434)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444444444444444444444444444433
No 216
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=76.10 E-value=18 Score=25.49 Aligned_cols=41 Identities=5% Similarity=0.290 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
|+..++.++..|+.+=+.|...+..|...-..|-.++..++
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le 45 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQ 45 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555555555555544444444444433333333333333
No 217
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=75.98 E-value=13 Score=23.87 Aligned_cols=41 Identities=10% Similarity=0.310 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~L 44 (150)
..+.+|+..+..|..--..|-+-...-++.|..||+.|..|
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555555555443
No 218
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=75.87 E-value=20 Score=25.87 Aligned_cols=31 Identities=6% Similarity=0.241 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 23 IKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 23 LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
||.++..=+.||..||.++..+.+.-..|.+
T Consensus 59 lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~ 89 (107)
T 2no2_A 59 LKQELATSQRELQVLQGSLETSAQSEANWAA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444433333333
No 219
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=75.86 E-value=14 Score=24.04 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
|+.|.+.|..--..|++-..+|.+.+..|+..|..|
T Consensus 7 i~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 7 IKITPEELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555444443
No 220
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=75.86 E-value=12 Score=32.23 Aligned_cols=53 Identities=13% Similarity=0.272 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
+|.++|+.|+.++.=...|+.-|.+-.+||...|...++.|+-+..+|.+...
T Consensus 222 ~i~s~k~~ikaI~~FF~~L~~kI~eA~~~~D~v~~~L~~e~~~i~~~~~~~~~ 274 (318)
T 1qoy_A 222 LIPELKNKLKSVQNFFTTLSNTVKQANKDIDAAKLKLTTEIAAIGEIKTETET 274 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccccccC
Confidence 56777777777777777777777777777777777777777666677766443
No 221
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=75.67 E-value=4.3 Score=24.47 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 26 DMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 26 DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
-..+..+||+.||..-+.|.+-|
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 222
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=75.65 E-value=13 Score=27.05 Aligned_cols=39 Identities=3% Similarity=0.198 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 21 VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 21 ~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.....||..||..+.+||..+.+.-.-+..|.....+|+
T Consensus 14 ~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 14 LKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 334445555555555555555444333334433333333
No 223
>3l1n_A MP1P, cell WALL antigen; helix-turn-helix, protein-ligand complex, lipid binding PROT; HET: PLM; 1.30A {Penicillium marneffei}
Probab=75.48 E-value=2.2 Score=33.72 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
.+.|+..++..|..|.+.|..|.++|....
T Consensus 44 ~~RDla~i~~vi~~I~~~v~~Ld~~I~~y~ 73 (194)
T 3l1n_A 44 VQRDISAFKKVMQNISLAVNKFNVDIERYV 73 (194)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 356677777777777777777777776533
No 224
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=75.31 E-value=5.6 Score=33.33 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDM-VSIKE-DMASIKVDMGSIKEDM 41 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv-~~LK~-DV~~LK~DV~~LK~DV 41 (150)
|+.....-++++..||+|| ..+|+ | .+||+-+..+|.-|
T Consensus 8 ~~~~~~~y~~~i~~ik~~v~~~~~~~n-~~lK~~~~~~kR~I 48 (297)
T 3pev_B 8 ISKMFWHYKDKIAQIKQDIVLPIKKAD-VNVRNLLSRHKRKI 48 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC-HHHHHHHHHHhhhc
Confidence 4455555666666666666 45554 5 56666666666655
No 225
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=74.86 E-value=4.4 Score=24.48 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
|+.|.+.|.+|-+.-..|..+|+.||
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555555555555555555544444
No 226
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=74.86 E-value=15 Score=24.17 Aligned_cols=28 Identities=4% Similarity=0.061 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKV 32 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~ 32 (150)
+-+.|..--+.+++-..+|.+.+..|+.
T Consensus 9 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~ 36 (98)
T 3gwk_C 9 TPEELRSSAQKYTAGSQQVTEVLNLLTQ 36 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 227
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.83 E-value=2.9 Score=36.54 Aligned_cols=43 Identities=5% Similarity=0.200 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
|+..+..|.+++..||+++..++.+...+++.+.++++.+..+
T Consensus 30 l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~ 72 (434)
T 4b4t_M 30 LQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNN 72 (434)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444555555555555555555555555555555555443
No 228
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=74.83 E-value=2.9 Score=34.68 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 28 ASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 28 ~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
.+|-.++..||++|...|+.+..||.++.
T Consensus 89 ~~lD~ei~sLkrqIq~~kQ~~~~L~~~~~ 117 (235)
T 2iw5_B 89 RQLDMELVSVKRQIQNIKQTNSALKEKLD 117 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555554
No 229
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=74.80 E-value=13 Score=26.49 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~L 44 (150)
++.|+..++.|+..+..|..++..++.-++.+.+-+.++
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555544444444443
No 230
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=74.77 E-value=26 Score=29.58 Aligned_cols=34 Identities=9% Similarity=0.283 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDM 41 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV 41 (150)
.|+..+..+++++.+++.++..-+.+|..|+..+
T Consensus 306 ~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~ 339 (406)
T 4dyl_A 306 SVQHTLTSVTDELAVATEMVFRRQEMVTQLQQEL 339 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666555555555555555555444
No 231
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=74.77 E-value=16 Score=29.12 Aligned_cols=23 Identities=0% Similarity=0.268 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDM 27 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV 27 (150)
.+..++.+++.++..+...+.+.
T Consensus 70 ~~~~~~a~l~~~~a~l~~a~~~~ 92 (341)
T 3fpp_A 70 QIKEVEATLMELRAQRQQAEAEL 92 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 232
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=74.50 E-value=18 Score=24.66 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVD 33 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~D 33 (150)
+..++..++..|..|..++..+|.||.....+
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~E 34 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDE 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544333
No 233
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=74.49 E-value=16 Score=30.63 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 19 DMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 19 Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
-+.+|..+|..+..++..|-.+|.++-+-+..|..+|+.+|.=
T Consensus 217 k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (268)
T 2yo3_A 217 KMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKL 259 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666666666666666666666666666666643
No 234
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.44 E-value=11 Score=32.73 Aligned_cols=54 Identities=2% Similarity=0.137 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
+++++.++++.+.+|++.+..++.++.++++-....-..-..|-..+..||..|
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 466777777777777777777777777777665554444445556666665433
No 235
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=74.12 E-value=15 Score=23.83 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGS 36 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~ 36 (150)
|+.|-+.|..--..|.+-..+|++.+..|+..|..
T Consensus 7 i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~ 41 (99)
T 3zbh_A 7 IRLTPEELRGVARQYNVESSNVTELIARLDQMSHT 41 (99)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 236
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=74.10 E-value=18 Score=24.73 Aligned_cols=51 Identities=2% Similarity=0.272 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSI-------KDDMGSIKEDMASIK 59 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~L-------K~DV~~LK~Dvs~lK 59 (150)
+...=.+|+.-|..+++++..=|..=..+|..+..+ =.|+..|..-++.|=
T Consensus 12 ~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~ 69 (72)
T 3cve_A 12 VEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 333333344444444444443333333333333333 345566666666553
No 237
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=73.97 E-value=9.7 Score=25.96 Aligned_cols=35 Identities=6% Similarity=0.289 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 21 VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 21 ~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
..|++.+..++..|..|.+....+.+.+..+|..+
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555444
No 238
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=73.94 E-value=13 Score=31.47 Aligned_cols=24 Identities=8% Similarity=0.351 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
+++.|..||..|+..+..++.++.
T Consensus 292 ~~~~l~~d~~~L~~~l~~v~~~l~ 315 (411)
T 1ux5_A 292 SIEQLVNDCKDFSQSIVNVERSVE 315 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 239
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=73.87 E-value=18 Score=24.49 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKV 32 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~ 32 (150)
..|+.||..|..||.+...++.-+..|..
T Consensus 2 ~~m~aiKkkmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 2 ASMDAIKKKMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777777777777776665
No 240
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=73.35 E-value=9.4 Score=27.50 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGS 43 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~ 43 (150)
+..||.+|+.|.+.=..|-+=|..+.+.+..|.+|...
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n 45 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDS 45 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44455555555555444444444444444444444433
No 241
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=73.31 E-value=21 Score=27.04 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
|+.|.+.|.++-+-+--+..+|+.||.=|..|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L 47 (125)
T 4g2k_A 16 MKQIEDKIEEILSKIYHIENEIARIKKLIGNL 47 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333
No 242
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=73.12 E-value=8.3 Score=27.08 Aligned_cols=30 Identities=13% Similarity=0.406 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 32 VDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 32 ~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
..|..|+..|..+..|-+.|..++..+..+
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~ 85 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAED 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444443
No 243
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=72.90 E-value=10 Score=31.57 Aligned_cols=28 Identities=11% Similarity=0.312 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 32 VDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 32 ~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
+.++.|-+|=..|..++..+++.+..+.
T Consensus 198 ~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 198 GKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 244
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.86 E-value=19 Score=24.26 Aligned_cols=45 Identities=4% Similarity=0.132 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK-----VDMGSIKEDMGSIKDDMGS 50 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK-----~DV~~LK~DV~~LK~DV~~ 50 (150)
.++|.+.+.+||.++..|+---+.=. .-|..+|.||+-+++-+..
T Consensus 11 ~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~e 60 (72)
T 3j21_W 11 IEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666554443211 3455555666666655544
No 245
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=72.64 E-value=4.7 Score=24.17 Aligned_cols=22 Identities=0% Similarity=0.155 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 16 IKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 16 LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
|.+-|.+|-..-++|..+|+.|
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333333333333333333
No 246
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=72.42 E-value=22 Score=24.95 Aligned_cols=54 Identities=0% Similarity=0.241 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
...+..|+.+=+.|.+.+..|...=..|..+|..++.....|.+.=...+.+-+
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn 63 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYS 63 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445566666666666666666666666666666555555555544444433333
No 247
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=72.41 E-value=0.93 Score=33.36 Aligned_cols=58 Identities=9% Similarity=0.260 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSI------KEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~L------K~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
+++..||..=-.+|+-+..- .+.+.+|..++..|+.++..|+++...|+.++..+|+.
T Consensus 31 ~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k 94 (107)
T 3a5t_A 31 EEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555543211 12344555555666666666666666666665555554
No 248
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=72.14 E-value=5.3 Score=24.37 Aligned_cols=27 Identities=4% Similarity=0.316 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
|.+|.+.|.+|-...+.|..+|+.||+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 249
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=72.05 E-value=14 Score=40.14 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 32 VDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 32 ~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
++++.-|+.|.++++.+....+.++..|.+
T Consensus 1969 ~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~ 1998 (3245)
T 3vkg_A 1969 QAAEIKQKDARELQVQLDVRNKEIAVQKVK 1998 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 250
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=72.01 E-value=13 Score=30.01 Aligned_cols=38 Identities=8% Similarity=0.296 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMG 42 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~ 42 (150)
++..|++.++.|+..+..++....-++.|+..+|.-+.
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665555555555554443
No 251
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=71.90 E-value=4.2 Score=28.06 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKED 40 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~D 40 (150)
|+++||..|..|++=.+++|.|+-.|-+|
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEd 32 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAED 32 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 44445555555555445555444444444
No 252
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=71.48 E-value=21 Score=24.25 Aligned_cols=49 Identities=8% Similarity=0.155 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
|..+...+..-|..|.+.+..+|.||+....+-.+|-.-=..|-.+|+.
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIat 51 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777777777777777766665555554333344444444
No 253
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=71.43 E-value=11 Score=26.67 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 36 SIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 36 ~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.++.-|..-|+|+..||.++..++.+
T Consensus 71 ~~~~klr~Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566677777777778777777766
No 254
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=71.34 E-value=6.7 Score=26.81 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9603 32 VDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 32 ~DV~~LK~DV~~LK~DV~~LK 52 (150)
+....|..++..|+.....|+
T Consensus 54 ~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 54 DSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 255
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=71.26 E-value=10 Score=27.86 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
++.|.+.|+.+..+|+.|..+|..++.+++.+|
T Consensus 71 l~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 71 LSALNTSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544444444
No 256
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=71.23 E-value=28 Score=25.63 Aligned_cols=26 Identities=4% Similarity=0.190 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
+.+.+.|+..+.+|+.++..+..|-.
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~ 30 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQ 30 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555544443
No 257
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=71.19 E-value=18 Score=28.90 Aligned_cols=13 Identities=23% Similarity=0.606 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhhh
Q psy9603 49 GSIKEDMASIKED 61 (150)
Q Consensus 49 ~~LK~Dvs~lK~D 61 (150)
..++..+..|++.
T Consensus 102 ~~i~~~lk~l~~~ 114 (279)
T 2xhe_B 102 NKIRADLKQIEKE 114 (279)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 258
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=71.17 E-value=12 Score=26.41 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhhh
Q psy9603 48 MGSIKEDMASIKED 61 (150)
Q Consensus 48 V~~LK~Dvs~lK~D 61 (150)
|..-|.|+..||.+
T Consensus 76 lr~Yk~dL~~lk~e 89 (102)
T 1vcs_A 76 MRSYKQEMGKLETD 89 (102)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 259
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=71.04 E-value=6.1 Score=23.84 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
|+.|.+.|.+|-+.-..|..+|+.||
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 45555555555555555555544444
No 260
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=71.04 E-value=7.5 Score=27.56 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9603 27 MASIKVDMGSIKEDMG 42 (150)
Q Consensus 27 V~~LK~DV~~LK~DV~ 42 (150)
|..|...+..+|.|++
T Consensus 46 i~~lE~eL~~~r~e~~ 61 (95)
T 3mov_A 46 LTDKEREMAEIRDQMQ 61 (95)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 261
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=70.46 E-value=7 Score=26.70 Aligned_cols=26 Identities=4% Similarity=0.192 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 22 SIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 22 ~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
.|++....|..++..|+..+..|++.
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 262
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=70.31 E-value=15 Score=25.95 Aligned_cols=40 Identities=0% Similarity=0.169 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVD------MGSIKEDMGSIK 45 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~D------V~~LK~DV~~LK 45 (150)
.+.|+.+|+.|++.+..|...+++++.. ...+|+=|..|+
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh 48 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLH 48 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 4566677777777777777777666542 233455554444
No 263
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=70.21 E-value=17 Score=31.79 Aligned_cols=25 Identities=4% Similarity=0.399 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
+.+|.+||..|+..+..++.++...
T Consensus 294 ~~~l~~~~~~L~~~l~~v~~~l~~~ 318 (483)
T 2j1d_G 294 MTELDKEISTLRSGLKAVETELEYQ 318 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555554443
No 264
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.18 E-value=24 Score=24.48 Aligned_cols=56 Identities=9% Similarity=0.318 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSI-------KDDMGSIKEDMASIKED 61 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~L-------K~DV~~LK~Dvs~lK~D 61 (150)
|..+...=.+|+.-|..++.++..=|..=..+|..+..+ =.|+..|..-++.|=+|
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~~ 77 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAEA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccc
Confidence 333334444444444444444444443333444433333 34566666666665443
No 265
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=69.69 E-value=11 Score=32.29 Aligned_cols=50 Identities=10% Similarity=0.226 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
.+++.|..||.+|+.++..++.++.. +|-..|++=+...++.+..|+.+.
T Consensus 287 v~~~~l~~d~~~L~~~l~~~~~e~~~--~d~~~l~~Fl~~a~~~~~~L~~~~ 336 (402)
T 4eah_A 287 VSLENVLLDVKELGRGMELIRRECSI--HDNSVLRNFLSTNEGKLDKLQRDA 336 (402)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHT--TCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777666655431 222233333333344444444443
No 266
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.32 E-value=29 Score=25.03 Aligned_cols=28 Identities=25% Similarity=0.614 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMAS 29 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~ 29 (150)
+|+.|..|+.+++.+..++..|+.++..
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3566666777777777776666666553
No 267
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=69.20 E-value=24 Score=28.07 Aligned_cols=20 Identities=0% Similarity=0.139 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIK 24 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK 24 (150)
.+..++.+++..+.++...+
T Consensus 77 ~l~~~~a~l~~a~~~~~~a~ 96 (341)
T 3fpp_A 77 TLMELRAQRQQAEAELKLAR 96 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 268
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.91 E-value=8.3 Score=33.49 Aligned_cols=41 Identities=12% Similarity=0.348 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 20 MVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 20 v~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+..|...+..|+.+-..||..+..++.++..+++++..+++
T Consensus 51 lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444445555555555666666666666666654
No 269
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=68.68 E-value=19 Score=25.42 Aligned_cols=17 Identities=6% Similarity=0.315 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9603 25 EDMASIKVDMGSIKEDM 41 (150)
Q Consensus 25 ~DV~~LK~DV~~LK~DV 41 (150)
..|..|+.+|+.||+..
T Consensus 53 ~~ie~l~eEi~~lk~en 69 (83)
T 1uii_A 53 KEIEQKDNEIARLKKEN 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 270
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=68.18 E-value=35 Score=26.28 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhcCC
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIK----------EDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS--IKEDIGG 64 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK----------~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~--lK~DigG 64 (150)
+.++...+.++...+.+....+ +++.+.+.++...+.++..++..+..++.+++. +++-+.|
T Consensus 66 ~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G 139 (277)
T 2f1m_A 66 KGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISG 139 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCe
Confidence 4556666666666666665543 566667777777777777777777777666543 3444443
No 271
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=68.02 E-value=9 Score=32.12 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=5.6
Q ss_pred HHHHHHhhhhcC
Q psy9603 52 KEDMASIKEDIG 63 (150)
Q Consensus 52 K~Dvs~lK~Dig 63 (150)
..+|.++|+.+.
T Consensus 179 ~~~veelr~~L~ 190 (307)
T 2l7b_A 179 ERGLSAIRERLG 190 (307)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHHhh
Confidence 444455554443
No 272
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=67.89 E-value=10 Score=24.61 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
|+.|...|..-...+++-...|.+.+..|+..|..|
T Consensus 4 i~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L 39 (97)
T 2vs0_A 4 IKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEI 39 (97)
T ss_dssp BCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444555555444444444
No 273
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=67.72 E-value=37 Score=25.57 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKE 25 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~ 25 (150)
++++.|+..|..|.+.+.+|..
T Consensus 47 ~~ve~i~~~i~~i~~~v~el~~ 68 (279)
T 3c98_B 47 EQVEEIRGFIDKIAENVEEVKR 68 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666655543
No 274
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=67.66 E-value=19 Score=22.58 Aligned_cols=30 Identities=3% Similarity=0.295 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMG 35 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~ 35 (150)
|.+|.+.+++|..-+++|.+-|+.|..+-.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444444444444444444444443333
No 275
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=67.61 E-value=25 Score=26.71 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASI 16 (150)
Q Consensus 4 ~Di~~Lk~dv~~L 16 (150)
.||+.++..|+..
T Consensus 89 kdlee~r~~l~P~ 101 (185)
T 3r2p_A 89 KDLEEVKAKVQPY 101 (185)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 3344444443333
No 276
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=67.53 E-value=26 Score=23.78 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 20 MVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 20 v~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
+..+..-|+.|...+..+|.|++....
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~ 54 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLR 54 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554443
No 277
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=67.36 E-value=30 Score=24.37 Aligned_cols=52 Identities=6% Similarity=0.270 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
++|+.|+-.|.+|.++-.+-.--+..-|..++.|+.-+.+=-.+|.-|++.+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555555555555444555555666666655555555555555443
No 278
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.31 E-value=21 Score=24.60 Aligned_cols=48 Identities=2% Similarity=0.168 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
|-+|+..+..--+++.....=|..|...+.+.-..|..|++.+..++|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555555555555666666666666666666666666655
No 279
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=67.27 E-value=7.1 Score=25.10 Aligned_cols=24 Identities=4% Similarity=0.271 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIK 38 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK 38 (150)
.+.+|+..|..++.+||..+..|+
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 280
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=67.08 E-value=15 Score=26.40 Aligned_cols=44 Identities=11% Similarity=0.250 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
+...+..||.++..|...=..|-+=|..+.+.+..|.+|....|
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~ 47 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQR 47 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 44556667777777766666666666666666666666665544
No 281
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=67.08 E-value=21 Score=27.81 Aligned_cols=60 Identities=17% Similarity=0.308 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYG 66 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg 66 (150)
.+|..|+++--+-|.+|-+-|..|+.+...=|-.+.+...-...||-+-..+|+.+.=|.
T Consensus 101 rELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 101 GELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 455666666666677777777777777777777777777777788888888888887776
No 282
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=67.05 E-value=29 Score=24.12 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhh
Q psy9603 35 GSIKEDMGSIKDDMGS-IKEDMASIK 59 (150)
Q Consensus 35 ~~LK~DV~~LK~DV~~-LK~Dvs~lK 59 (150)
+.++.-|..-|.|+.. ||.++..|-
T Consensus 68 ~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 68 ATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555566666666 666665553
No 283
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=67.03 E-value=10 Score=26.21 Aligned_cols=32 Identities=6% Similarity=0.211 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 28 ASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 28 ~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
..|+.....|..++..|+.....|+..++.|+
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555555555555555554
No 284
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=66.97 E-value=22 Score=25.16 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 29 SIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
.|...|..|++.++.||+....||+
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444
No 285
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=66.75 E-value=22 Score=31.08 Aligned_cols=26 Identities=8% Similarity=0.377 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMAS 29 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~ 29 (150)
.+++.|..||..|+.++..++.++..
T Consensus 281 vs~~~l~~dl~~L~~~l~~v~~~l~~ 306 (457)
T 3obv_E 281 VSAENLQKSLDQMKKQIADVERDVQN 306 (457)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666666666666666543
No 286
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=66.50 E-value=29 Score=27.77 Aligned_cols=55 Identities=9% Similarity=0.171 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK----VDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK----~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.+.|..||..+.+-|..|-+|+.+|+ .|+..|-..|..|.+-...|+........
T Consensus 167 ~e~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~r~~~l~~~w~~L~~~~~~r~~ 225 (235)
T 2odv_A 167 AGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLK 225 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777776 46777777777777777777766655443
No 287
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=66.22 E-value=20 Score=23.08 Aligned_cols=24 Identities=8% Similarity=0.342 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
.++..|..|.+++..+|.||+...
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~ 27 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLK 27 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554433
No 288
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=66.06 E-value=35 Score=26.38 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 23 IKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 23 LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
++.|+...+.....++.|++.|+.....|..+.+.|+++..
T Consensus 71 l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQ 111 (146)
T 2xnx_M 71 ITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQ 111 (146)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444445555555555443
No 289
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.02 E-value=29 Score=23.81 Aligned_cols=44 Identities=5% Similarity=0.212 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMG 49 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~ 49 (150)
|..|+..+..--+++....+=|.+|...+.+.-+.|.+|+..+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444444544444455555555555555555554443
No 290
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=65.81 E-value=18 Score=31.96 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 16 IKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 16 LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
+.+++..+.+-|....+-|..|++-+....+-|..|++.|..|.+..
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444445555555555555566666666665544
No 291
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=65.55 E-value=31 Score=23.95 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH-hhhh
Q psy9603 43 SIKDDMGSIKEDMAS-IKED 61 (150)
Q Consensus 43 ~LK~DV~~LK~Dvs~-lK~D 61 (150)
.+++-|..-|.|+.. +|.+
T Consensus 69 ~~~~klr~Yk~dl~~~lk~~ 88 (97)
T 3onj_A 69 TYKAKLREWKKTIQSDIKRP 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 334444444455554 4443
No 292
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.42 E-value=12 Score=32.50 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
.|...+..|...+..|+.+-..||..+..+|+++..+++++..|++
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444455555555555555555666666666666666666555543
No 293
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=65.32 E-value=5.6 Score=29.28 Aligned_cols=30 Identities=3% Similarity=0.201 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 22 SIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 22 ~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
+|.+=|..|++++..|+..+.+|++.+...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554443
No 294
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=65.20 E-value=21 Score=24.06 Aligned_cols=11 Identities=9% Similarity=0.344 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy9603 36 SIKEDMGSIKD 46 (150)
Q Consensus 36 ~LK~DV~~LK~ 46 (150)
.+|.||+-+++
T Consensus 52 ~vRr~IARi~T 62 (72)
T 3v2d_2 52 DLKRQIARLLT 62 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 295
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=65.05 E-value=17 Score=29.67 Aligned_cols=27 Identities=4% Similarity=0.181 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 28 ASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 28 ~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
.++-.++..|.+..++|++.+..|++.
T Consensus 102 ~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 102 RPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333334444444444444444444444
No 296
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=64.90 E-value=19 Score=29.72 Aligned_cols=23 Identities=13% Similarity=0.416 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDM 34 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV 34 (150)
++.+|.+|+..|+.++..++.++
T Consensus 211 s~~~l~~~l~~l~~~~~~~~~~l 233 (340)
T 1v9d_A 211 SAENLQKSLDQMKKQIADVERDV 233 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655554
No 297
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=64.89 E-value=29 Score=24.67 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
+-++.|+.-+..++.-+..|..++..+++-+..+.+.+..+
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555554444433
No 298
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=64.77 E-value=11 Score=26.01 Aligned_cols=30 Identities=7% Similarity=0.244 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 22 SIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 22 ~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
.|++....+..++..|+.....|+.-+..|
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444433
No 299
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=64.66 E-value=40 Score=27.03 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
.++.|+.+|..|++.|.+|+.=..
T Consensus 36 ~v~~I~~~I~~I~~~v~~l~~l~~ 59 (267)
T 1dn1_B 36 QVEEIRGFIDKIAENVEEVKRKHS 59 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655554443
No 300
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=64.18 E-value=17 Score=30.69 Aligned_cols=34 Identities=12% Similarity=0.320 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMG 35 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~ 35 (150)
|+.-|..++++|.+++.++..-+++|.+|+..+.
T Consensus 307 lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~ 340 (406)
T 4dyl_A 307 VQHTLTSVTDELAVATEMVFRRQEMVTQLQQELR 340 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777665554
No 301
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=63.93 E-value=14 Score=33.07 Aligned_cols=42 Identities=17% Similarity=0.419 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 20 MVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 20 v~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
+..|.++..+|+.+++.|++-.+.-+.=...+|+++.++|..
T Consensus 418 ~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~ 459 (470)
T 3ilw_A 418 RQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDR 459 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444455566666666654
No 302
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=63.83 E-value=23 Score=23.38 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKE 25 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~ 25 (150)
++|.+.+.+||.++..|+-
T Consensus 12 ~EL~~~l~elk~ELf~LR~ 30 (66)
T 1r73_A 12 EELKNLLEEKKRQLMELRF 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666553
No 303
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=63.57 E-value=32 Score=31.17 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q psy9603 44 IKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 44 LK~DV~~LK~Dvs~lK~Di 62 (150)
|+..|..+..+|+.|..||
T Consensus 137 Lq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 137 LQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443
No 304
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=63.09 E-value=18 Score=23.64 Aligned_cols=20 Identities=0% Similarity=0.285 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKE 25 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~ 25 (150)
.++|.+.+.+||.++..|+-
T Consensus 11 ~~EL~~~l~elk~Elf~LR~ 30 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRM 30 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544
No 305
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=63.08 E-value=35 Score=23.68 Aligned_cols=55 Identities=9% Similarity=0.234 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
.+..-++.|++++.+-...|..||.-+..=-.|...|..++-+|-.+-+.|.+..
T Consensus 15 ~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl 69 (75)
T 3a7o_A 15 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKL 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHH
Confidence 3445777888888888888888887777777788888888888777766665543
No 306
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=62.83 E-value=30 Score=22.88 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9603 23 IKEDMASIKVDMGSIK 38 (150)
Q Consensus 23 LK~DV~~LK~DV~~LK 38 (150)
|..||..-+..|..|.
T Consensus 48 l~~ei~~~~~~v~~v~ 63 (118)
T 3uul_A 48 FMMELSAHQSSVGSVL 63 (118)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333433333333333
No 307
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=62.73 E-value=6.3 Score=27.80 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9603 17 KEDMVSIKEDMASIKVDM 34 (150)
Q Consensus 17 K~Dv~~LK~DV~~LK~DV 34 (150)
|..|..|++=-.++|.|+
T Consensus 21 kkevkKL~~~A~q~kmdL 38 (81)
T 3csx_A 21 KKKVRKLNSKAGQMKMDL 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 308
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=62.45 E-value=16 Score=30.64 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
.+.+|..+|..+..+++.+-.+|+++-..|..|..+|..+|.=
T Consensus 217 k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (268)
T 2yo3_A 217 KMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKL 259 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777777777777777777777777777777777766643
No 309
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=62.05 E-value=17 Score=21.71 Aligned_cols=25 Identities=0% Similarity=0.053 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 14 ASIKEDMVSIKEDMASIKVDMGSIK 38 (150)
Q Consensus 14 ~~LK~Dv~~LK~DV~~LK~DV~~LK 38 (150)
.+|.+-|.+|-...++|..+|+.||
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444444444444444444333
No 310
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=62.03 E-value=19 Score=25.79 Aligned_cols=56 Identities=13% Similarity=0.272 Sum_probs=32.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 7 GSIKEDMA-SIKEDMVSIKEDMASIKV--DMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 7 ~~Lk~dv~-~LK~Dv~~LK~DV~~LK~--DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
..|...|. +|....+.|..++..|.. =-..|..|-++|+.....++...++-|.++
T Consensus 36 ~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ek~~e~ 94 (97)
T 1hs7_A 36 KELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYNQRKSLF 94 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555555 555555555555552222 234566677777777777777777766654
No 311
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=61.95 E-value=37 Score=23.63 Aligned_cols=23 Identities=4% Similarity=0.294 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 16 IKEDMVSIKEDMASIKVDMGSIK 38 (150)
Q Consensus 16 LK~Dv~~LK~DV~~LK~DV~~LK 38 (150)
|-..|.++++.|+.||+....||
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333
No 312
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=61.92 E-value=15 Score=22.02 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9603 36 SIKEDMGSIKDDMGSI 51 (150)
Q Consensus 36 ~LK~DV~~LK~DV~~L 51 (150)
+...||.+||.-.+.|
T Consensus 11 a~qqDIddlkrQN~~L 26 (34)
T 1a93_B 11 THQQDIDDLKRQNALL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHH
Confidence 3333333333333333
No 313
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=61.91 E-value=28 Score=23.49 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~ 28 (150)
.+...|+.++-.|+.++.
T Consensus 6 ~~~~~l~~E~~~lk~E~~ 23 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNN 23 (65)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455555555555553
No 314
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=61.70 E-value=30 Score=25.35 Aligned_cols=29 Identities=10% Similarity=0.359 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
|+..++.|+..+..|..++..++.-++.+
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~ 131 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEV 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 315
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=61.68 E-value=50 Score=26.28 Aligned_cols=41 Identities=5% Similarity=0.129 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
.++..+..|.+....+.+++..|+.....+-.+=.++-+|+
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555444444444
No 316
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=61.41 E-value=29 Score=22.24 Aligned_cols=30 Identities=7% Similarity=0.282 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~L 44 (150)
.++.-|..|.+.+..+|.||+..-.+-.+|
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~L 33 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDL 33 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666665555444444
No 317
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=61.37 E-value=14 Score=31.37 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 26 DMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 26 DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
-|..|..-++.|++.|..|+++|..+++
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555444444433
No 318
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=61.12 E-value=34 Score=27.51 Aligned_cols=33 Identities=9% Similarity=0.288 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
+..|+..+..|+..+.++|...-.++.|...+|
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~R 93 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFR 93 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 319
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=61.10 E-value=26 Score=24.70 Aligned_cols=21 Identities=0% Similarity=0.113 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIK 24 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK 24 (150)
..|..|++.+..|...+.+++
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 320
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=60.73 E-value=6.4 Score=32.59 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMG 42 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~ 42 (150)
+.+|..++..||.+|...|+.+..||.++.
T Consensus 88 l~~lD~ei~sLkrqIq~~kQ~~~~L~~~~~ 117 (235)
T 2iw5_B 88 LRQLDMELVSVKRQIQNIKQTNSALKEKLD 117 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554443
No 321
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=60.72 E-value=19 Score=30.07 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhh
Q psy9603 32 VDMGSIKEDMGSIKDDM-GSIKEDMASIKE 60 (150)
Q Consensus 32 ~DV~~LK~DV~~LK~DV-~~LK~Dvs~lK~ 60 (150)
.+|..|++.++-+-+++ ..+..++.+|+.
T Consensus 136 ~~~eelr~kL~Py~~EL~~~~~~~~eeLr~ 165 (307)
T 2l7b_A 136 QSTEELRVRLASHLRKLRKRLLRDADDLQK 165 (307)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34455555444443333 233334444443
No 322
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=60.70 E-value=20 Score=23.72 Aligned_cols=36 Identities=8% Similarity=0.055 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
|+.|...|..-...|..-...|.+.+.+|+..|+.|
T Consensus 4 i~v~~~~~~~~a~~i~~~~~~i~~~l~~l~~~v~~L 39 (96)
T 3h6p_C 4 IMYNYPAMMAHAGDMAGYAGTLQSLGADIASEQAVL 39 (96)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHT
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555544
No 323
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=60.64 E-value=40 Score=23.61 Aligned_cols=15 Identities=13% Similarity=0.510 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhhh
Q psy9603 47 DMGSIKEDMASIKED 61 (150)
Q Consensus 47 DV~~LK~Dvs~lK~D 61 (150)
-|..-|.|+..||.+
T Consensus 86 klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 86 KLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 334445555555544
No 324
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.54 E-value=12 Score=32.50 Aligned_cols=43 Identities=12% Similarity=0.265 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 19 DMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 19 Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.|.+++.++.++.+++..|......|+..+..+|+++..|++.
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~ 68 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEP 68 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4455555555555666666666666666677777777777664
No 325
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=60.47 E-value=14 Score=22.26 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 14 ASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 14 ~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
++|.+-|.+|-..-++|..+|+.|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 333333333333333333333333
No 326
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=60.44 E-value=18 Score=26.40 Aligned_cols=9 Identities=33% Similarity=0.556 Sum_probs=4.3
Q ss_pred HHHHHHhhh
Q psy9603 52 KEDMASIKE 60 (150)
Q Consensus 52 K~Dvs~lK~ 60 (150)
+.||..||+
T Consensus 87 s~DI~~ire 95 (101)
T 4aj5_1 87 SMDIMKIRE 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555544
No 327
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=60.27 E-value=22 Score=26.57 Aligned_cols=44 Identities=7% Similarity=0.216 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMAS--IK--VDMGSIKEDMGSIKDDMG 49 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~--LK--~DV~~LK~DV~~LK~DV~ 49 (150)
.++|.+.+.+|+.++..|+---+. |. .-|..++.||+-+++-+.
T Consensus 16 ~eEL~~~L~eLK~ELf~LRfq~atgqlen~~rIr~vRRdIARi~Tvl~ 63 (124)
T 3iz5_c 16 KDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVIN 63 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHH
Confidence 345555566666665555433321 11 344555555555555444
No 328
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=60.23 E-value=49 Score=30.45 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
+...+++++.+..||+++..-++
T Consensus 358 lddArNEItsaeSaInslqaqvS 380 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLS 380 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 329
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=59.95 E-value=42 Score=27.31 Aligned_cols=24 Identities=8% Similarity=0.296 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIK 38 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK 38 (150)
.|...|..++++|+.||.....||
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 330
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=59.69 E-value=51 Score=29.88 Aligned_cols=27 Identities=7% Similarity=0.147 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 32 VDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 32 ~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+-|..||.-|..+..+|.-|..||..-
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666543
No 331
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.47 E-value=62 Score=27.04 Aligned_cols=15 Identities=0% Similarity=0.297 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy9603 41 MGSIKDDMGSIKEDM 55 (150)
Q Consensus 41 V~~LK~DV~~LK~Dv 55 (150)
|.+|...+..+...|
T Consensus 452 ~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 452 ITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 332
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=59.36 E-value=40 Score=25.14 Aligned_cols=44 Identities=2% Similarity=0.200 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMAS---IK--VDMGSIKEDMGSIKDDMGS 50 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~---LK--~DV~~LK~DV~~LK~DV~~ 50 (150)
++|.+.+.+|+.++..|+---+. |. .-|..++.||+-+++-+++
T Consensus 16 eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~e 64 (124)
T 4a17_U 16 EQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINE 64 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555433321 11 3455555666666655543
No 333
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=59.06 E-value=5.1 Score=28.27 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDM 27 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV 27 (150)
+++||.+|+.|+.--.++|.|+
T Consensus 17 i~eLkkevkKL~~~A~q~kmdL 38 (81)
T 3csx_A 17 VADLKKKVRKLNSKAGQMKMDL 38 (81)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333343333
No 334
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=58.94 E-value=37 Score=22.57 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDM 34 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV 34 (150)
|+.|...|..-...|.+-..+|.+.+..|+..|
T Consensus 5 i~v~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~ 37 (101)
T 3fav_A 5 MKTDAATLAQEAGNFERISGDLKTQIDQVESTA 37 (101)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 335
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=58.45 E-value=33 Score=25.83 Aligned_cols=20 Identities=0% Similarity=0.454 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
|+..|.+|+..|+.|+.+|+
T Consensus 66 L~~ki~eL~~kvA~le~e~~ 85 (125)
T 2pms_C 66 LSDKIDELDAEIAKLEDQLK 85 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 336
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=58.33 E-value=43 Score=26.75 Aligned_cols=55 Identities=13% Similarity=0.258 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIK----------VDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK----------~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
|+...+.+++..+..+...+.+...++ .++...+.++...+.++..++..++.++
T Consensus 92 ~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~l~~a~~~l~~~~ 156 (359)
T 3lnn_A 92 DLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLG 156 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455556666666666666655554332 3445555555555555555555555444
No 337
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=58.27 E-value=25 Score=23.20 Aligned_cols=21 Identities=5% Similarity=0.292 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKED 26 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~D 26 (150)
.++|.+.+.+||.++..|+--
T Consensus 11 ~~EL~~~l~elk~ELf~LR~q 31 (67)
T 2zjr_V 11 ATDFAKEIDARKKELMELRFQ 31 (67)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777776666643
No 338
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=58.22 E-value=30 Score=23.24 Aligned_cols=14 Identities=7% Similarity=0.242 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy9603 43 SIKDDMGSIKEDMA 56 (150)
Q Consensus 43 ~LK~DV~~LK~Dvs 56 (150)
.+|.||+-+++-+.
T Consensus 52 ~vRr~IARi~Tvl~ 65 (72)
T 3v2d_2 52 DLKRQIARLLTVLN 65 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 339
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=57.96 E-value=11 Score=26.45 Aligned_cols=25 Identities=8% Similarity=0.282 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKED 26 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~D 26 (150)
||+.|+.|+..+..|++.+..|+..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566666666666666666666653
No 340
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=57.89 E-value=35 Score=22.00 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 19 DMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMA 56 (150)
Q Consensus 19 Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs 56 (150)
+|..||+=+.+--+-|.+|+.=++.|=.-|..|++-|+
T Consensus 5 ~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN 42 (51)
T 3kpe_A 5 EVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYID 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444333
No 341
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=57.72 E-value=16 Score=22.04 Aligned_cols=25 Identities=4% Similarity=0.211 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASI 30 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~L 30 (150)
|+.|.+.|.+|-..-..|...|..|
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444444444443333
No 342
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=57.69 E-value=3.9 Score=24.56 Aligned_cols=22 Identities=5% Similarity=0.305 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 23 IKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 23 LK~DV~~LK~DV~~LK~DV~~L 44 (150)
||.-|..|+.|...+.+.+..+
T Consensus 9 vKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 9 VRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 343
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.64 E-value=17 Score=31.61 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
+.|.+++.++..+.+.+..|+.....|++.+..+++++..|++
T Consensus 25 ~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~ 67 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQE 67 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555555555555555655556666666666666655554
No 344
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=57.62 E-value=12 Score=25.16 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 36 SIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 36 ~LK~DV~~LK~DV~~LK~Dv 55 (150)
..+..+.+|.+-+..|.+-+
T Consensus 58 ~w~~~~~~l~~~L~~i~~~l 77 (101)
T 3fav_A 58 RFQEAANKQKQELDEISTNI 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 345
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=57.55 E-value=29 Score=25.81 Aligned_cols=43 Identities=2% Similarity=0.177 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASI---K--VDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~L---K--~DV~~LK~DV~~LK~DV 48 (150)
.++|.+.+.+|+.++..|+---+.= . .-|..++.||+-+++-+
T Consensus 14 ~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl 61 (123)
T 2zkr_v 14 KEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVI 61 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH
Confidence 3556666666666666655433321 0 33445555555555543
No 346
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=57.31 E-value=26 Score=28.05 Aligned_cols=55 Identities=7% Similarity=0.174 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIK----------EDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK----------~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
+.++...+..+...+.+...++ .++.+.+.++...+.++..++..+..++.+.+.
T Consensus 97 ~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~ 161 (359)
T 3lnn_A 97 NSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGG 161 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 5677777888888887777665 467788888888888888888888888877763
No 347
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=56.85 E-value=47 Score=23.16 Aligned_cols=47 Identities=13% Similarity=0.322 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 15 SIKEDMVSIKED----MASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 15 ~LK~Dv~~LK~D----V~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.-|+-++.+|.| |.+|-.+-..||..+..+++-.+-++..+.++-++
T Consensus 23 ~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 23 ETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555544 34555555556666555555555555555554443
No 348
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=56.75 E-value=57 Score=24.09 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy9603 15 SIKEDMVSIK 24 (150)
Q Consensus 15 ~LK~Dv~~LK 24 (150)
.|+.....++
T Consensus 33 ~Lk~e~e~l~ 42 (155)
T 2oto_A 33 DLKARLENAM 42 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 349
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=56.71 E-value=39 Score=22.19 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK 31 (150)
.++|.+.+.++|.+.-.|+
T Consensus 11 ~~EL~~~l~elk~ELf~LR 29 (66)
T 1r73_A 11 DEELKNLLEEKKRQLMELR 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777666
No 350
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=56.67 E-value=24 Score=27.68 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 23 IKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 23 LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
|+.+...|+.-+..|+++...|...+..|+..+..+
T Consensus 54 l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 54 IAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666666666666666644444
No 351
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=56.56 E-value=19 Score=32.55 Aligned_cols=43 Identities=16% Similarity=0.350 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 19 DMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 19 Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
++..|.++..+|+.+++.|+.-.+.-+.=...+|+++.++|..
T Consensus 455 e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~ 497 (514)
T 2inr_A 455 DIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKK 497 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333345566666666665
No 352
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=56.52 E-value=16 Score=32.94 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 19 DMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 19 Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
++..|.++..+|+.+++.|+.-.+.-+.=...+|+++.++|..
T Consensus 431 e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~ 473 (496)
T 2nov_A 431 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 473 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333345556666666654
No 353
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=56.40 E-value=40 Score=22.17 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9603 22 SIKEDMASIKVDMGSIK 38 (150)
Q Consensus 22 ~LK~DV~~LK~DV~~LK 38 (150)
.|..||..-+..|..|.
T Consensus 47 ~l~~ei~~~~~~v~~~~ 63 (119)
T 3uun_A 47 GYMMDLTAHQGRVGNIL 63 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 33333333333333333
No 354
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=56.39 E-value=10 Score=35.26 Aligned_cols=28 Identities=11% Similarity=0.317 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCccCC
Q psy9603 43 SIKDDMGSIKEDMASIKEDIGGYGVDKR 70 (150)
Q Consensus 43 ~LK~DV~~LK~Dvs~lK~DigGyg~~~~ 70 (150)
+.|+.-++|.+||.++.+|+.+-|.|--
T Consensus 26 ecK~aFaELqt~m~dlt~dl~~~giPfL 53 (627)
T 3ig3_A 26 ECKEAFAELQTDINELTNHMDGVQIPFL 53 (627)
T ss_dssp HHHHHHHHHHHHHHHHSCC---CCCCBC
T ss_pred HHHHHHHHHccchhhhhhccccCCCCCc
Confidence 3444455555555566666665555533
No 355
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=56.25 E-value=24 Score=24.90 Aligned_cols=34 Identities=0% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
+..--++-..|...|..++.+|+.||+...+|++
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 356
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=56.23 E-value=58 Score=24.57 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHH-HHHHHH----------------HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Q psy9603 11 EDMASIKEDMVS-IKEDMA----------------SIKVDMGS-----IKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 11 ~dv~~LK~Dv~~-LK~DV~----------------~LK~DV~~-----LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
++|...++-+.+ |++-|+ +|..||+. |..|-.+-++=-..|++++..|
T Consensus 30 ~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~L 99 (133)
T 3ls0_A 30 NPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERL 99 (133)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence 445555555666 555554 56666665 3445555554455555555544
No 357
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=56.08 E-value=55 Score=23.67 Aligned_cols=15 Identities=20% Similarity=0.616 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHh
Q psy9603 44 IKDDMGSIKEDMASI 58 (150)
Q Consensus 44 LK~DV~~LK~Dvs~l 58 (150)
|.+++..||.++..+
T Consensus 109 le~e~~~Lk~~led~ 123 (129)
T 2fxo_A 109 LEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 358
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=55.73 E-value=26 Score=21.04 Aligned_cols=26 Identities=4% Similarity=0.307 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK 31 (150)
|+.|.++|.+|-+.-..|..+|..||
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45555555555555544444444443
No 359
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=55.34 E-value=12 Score=31.82 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 30 IKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 30 LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
+.+-|..|.+-+..|++-|..|+.+|..+.+.
T Consensus 26 ~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 26 VAGSLRSMKSVLEHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp THHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666666665554
No 360
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=55.24 E-value=21 Score=25.70 Aligned_cols=6 Identities=0% Similarity=0.396 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy9603 35 GSIKED 40 (150)
Q Consensus 35 ~~LK~D 40 (150)
..|.++
T Consensus 57 ~~L~~e 62 (96)
T 1t3j_A 57 ARLSKE 62 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 361
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=55.21 E-value=33 Score=23.02 Aligned_cols=37 Identities=5% Similarity=0.432 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKED 40 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~D 40 (150)
++|..|...|..|-..|-.|=..=..+=.+|..+|.+
T Consensus 3 ~~L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~ 39 (90)
T 2d8d_A 3 ERIQALRKEVDRVNREILRLLSERGRLVQEIGRLQTE 39 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555555555556555543
No 362
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=55.08 E-value=20 Score=24.25 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 29 SIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV 48 (150)
.|+..+..|++++..|+..+
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 363
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=54.80 E-value=25 Score=31.51 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKED 26 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~D 26 (150)
++..|+++.++|+.++..|++-
T Consensus 417 e~~kl~~E~~~l~~~i~~l~~i 438 (470)
T 3ilw_A 417 ERQRIIDDLAKIEAEIADLEDI 438 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333
No 364
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=54.10 E-value=38 Score=21.20 Aligned_cols=33 Identities=0% Similarity=0.294 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
|.+|.+.+..|..-+++|.+-|++|..+-..|+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344444444444444444444444444444443
No 365
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=53.82 E-value=21 Score=21.02 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 34 MGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 34 V~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
|..||.-|..||.---..|..|+.|
T Consensus 3 vqalkkrvqalkarnyaakqkvqal 27 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQAL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444444444444444444443
No 366
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=53.78 E-value=47 Score=27.86 Aligned_cols=55 Identities=9% Similarity=0.204 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
+=++.|+++++.|++++..+++++++-. +-.-.|.-+.++++-+.++...+.+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEKRP-ENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665554221 112234445555555555555555543
No 367
>2wpq_A Trimeric autotransporter adhesin fragment; hydrophobic core, ION coordination, protein export, TAA, membrane protein, polar core; 1.85A {Salmonella enterica subsp}
Probab=53.67 E-value=61 Score=23.54 Aligned_cols=6 Identities=33% Similarity=0.684 Sum_probs=2.2
Q ss_pred HHHHHh
Q psy9603 53 EDMASI 58 (150)
Q Consensus 53 ~Dvs~l 58 (150)
.+|+.+
T Consensus 90 ~~~~~~ 95 (99)
T 2wpq_A 90 NEIARI 95 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 368
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=53.65 E-value=46 Score=24.32 Aligned_cols=41 Identities=7% Similarity=0.287 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
+-++.|+.-+..|+.-+..|..++..+++-+..+..-+..+
T Consensus 98 eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 98 EAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555444444433
No 369
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=53.63 E-value=19 Score=21.63 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGS 36 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~ 36 (150)
+|.+-|.+|-..-++|..+|+.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~R 26 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333333333333333333
No 370
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=53.48 E-value=40 Score=23.23 Aligned_cols=55 Identities=7% Similarity=0.283 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
||=.|+..|+ .++|.++..-|+.|+.==..+=.-++.|.+|-..|..++..++..
T Consensus 10 eml~IrKnma--~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~r 64 (72)
T 2xu6_A 10 EFLNIQKNST--MSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDR 64 (72)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4444444443 245555555555555444444445666666666666666666543
No 371
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=53.27 E-value=61 Score=23.40 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 30 IKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 30 LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
|..++....+-.+.|-..=.-|..+++.||.++
T Consensus 88 l~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 88 MNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444555666666654
No 372
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=53.15 E-value=18 Score=24.42 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 34 MGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 34 V~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
|..|+..+..|++++..|+..+.+.+
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45567777777777777777776655
No 373
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=53.01 E-value=45 Score=22.25 Aligned_cols=18 Identities=6% Similarity=0.394 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIK 24 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK 24 (150)
++|.+.+.+||.++..|+
T Consensus 15 ~EL~~~l~elk~ELf~LR 32 (71)
T 1vq8_V 15 AEREAELDDLKTELLNAR 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555544
No 374
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=52.98 E-value=24 Score=32.02 Aligned_cols=9 Identities=0% Similarity=0.379 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy9603 30 IKVDMGSIK 38 (150)
Q Consensus 30 LK~DV~~LK 38 (150)
++..+..|+
T Consensus 371 ~~~~~~~l~ 379 (695)
T 2j69_A 371 VEPEFNKLT 379 (695)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 375
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=52.85 E-value=29 Score=27.24 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 21 VSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 21 ~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
..|+.-+..|+++...|.+.+..|++
T Consensus 59 ~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 59 NHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 376
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=52.84 E-value=27 Score=32.94 Aligned_cols=14 Identities=7% Similarity=0.166 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhhh
Q psy9603 48 MGSIKEDMASIKED 61 (150)
Q Consensus 48 V~~LK~Dvs~lK~D 61 (150)
...+|+++.++|..
T Consensus 432 ~~~i~~EL~~i~~k 445 (716)
T 1zvu_A 432 NNLLKKELQADAQA 445 (716)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 377
>3l1n_A MP1P, cell WALL antigen; helix-turn-helix, protein-ligand complex, lipid binding PROT; HET: PLM; 1.30A {Penicillium marneffei}
Probab=52.68 E-value=9.8 Score=29.98 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVS 22 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~ 22 (150)
|+..|..|.+.|..|.++|..
T Consensus 51 i~~vi~~I~~~v~~Ld~~I~~ 71 (194)
T 3l1n_A 51 FKKVMQNISLAVNKFNVDIER 71 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 455666666666666666655
No 378
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=52.49 E-value=41 Score=22.14 Aligned_cols=18 Identities=6% Similarity=0.350 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9603 14 ASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 14 ~~LK~Dv~~LK~DV~~LK 31 (150)
++|.+.+.++|.+.-.|+
T Consensus 12 ~EL~~~l~elk~ELf~LR 29 (67)
T 2zjr_V 12 TDFAKEIDARKKELMELR 29 (67)
T ss_dssp HHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666666665
No 379
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=52.17 E-value=58 Score=22.84 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 29 SIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 29 ~LK~DV~~LK~DV~~LK~DV 48 (150)
.+..-|..|...+..+|+||
T Consensus 41 ~~q~~i~~lE~eL~~~r~e~ 60 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQM 60 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 380
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=51.76 E-value=41 Score=25.06 Aligned_cols=45 Identities=7% Similarity=0.265 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMG--SIK--EDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~--~LK--~DV~~LK~DV~~LK~Dvs~ 57 (150)
.++|.+.+.+||.+...|+---+ .|. .-|.+++.||+-|++-+++
T Consensus 16 ~eEL~~~L~eLK~ELf~LRfq~atgqlen~~rIr~vRRdIARi~Tvl~e 64 (124)
T 3iz5_c 16 KDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINA 64 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666554332 221 3345555666666665543
No 381
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=51.25 E-value=45 Score=26.64 Aligned_cols=32 Identities=13% Similarity=0.369 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 24 KEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 24 K~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
+.++...+.++..++..+..++..+..++.++
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAETNL 152 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555544
No 382
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=50.82 E-value=51 Score=26.82 Aligned_cols=27 Identities=4% Similarity=0.244 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 20 MVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 20 v~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
-..|...|..|+.+|+.||+...+||+
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554443
No 383
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=50.20 E-value=1e+02 Score=25.12 Aligned_cols=30 Identities=7% Similarity=0.255 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCccCCC
Q psy9603 42 GSIKDDMGSIKEDMASIKEDIGGYGVDKRG 71 (150)
Q Consensus 42 ~~LK~DV~~LK~Dvs~lK~DigGyg~~~~g 71 (150)
.++..-...|.+-...|++-+..|-.+...
T Consensus 279 ~~~~~~~~~l~~~a~~L~~~v~~Fki~~~~ 308 (341)
T 3zx6_A 279 EESAAAAAALEEQASRLTEAVAVFRIQQQQ 308 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCBCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 334444566777788888888888876643
No 384
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=50.17 E-value=30 Score=24.89 Aligned_cols=15 Identities=13% Similarity=0.545 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy9603 23 IKEDMASIKVDMGSI 37 (150)
Q Consensus 23 LK~DV~~LK~DV~~L 37 (150)
|+++|..|..+|..|
T Consensus 52 L~~EI~~L~~eI~~L 66 (96)
T 1t3j_A 52 LEEEIARLSKEIDQL 66 (96)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 385
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=49.86 E-value=99 Score=25.58 Aligned_cols=46 Identities=11% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
..+|.+|...|+.|+.--..+-..++.|.+|=..|..++..++.-+
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Ri 221 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRL 221 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3445555555555555444444445544444444444444444433
No 386
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=49.68 E-value=48 Score=27.97 Aligned_cols=19 Identities=5% Similarity=0.254 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVD 33 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~D 33 (150)
+|.+||..|+..+..++.+
T Consensus 295 ~l~~d~~~L~~~l~~v~~~ 313 (411)
T 1ux5_A 295 QLVNDCKDFSQSIVNVERS 313 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333
No 387
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=49.57 E-value=24 Score=21.18 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
+|.+-|.+|-..=++|..+|+.|
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHH
Confidence 33333333333333333333333
No 388
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=49.56 E-value=43 Score=27.17 Aligned_cols=32 Identities=6% Similarity=0.129 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKVDMGSIKED 40 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~D 40 (150)
+.+.+..+-+++..+.+.+.+|++.+..|++.
T Consensus 97 ~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 97 AEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33334444444444444444444444444433
No 389
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=49.23 E-value=31 Score=29.46 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDM 20 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv 20 (150)
..||+.|+..+..++.++
T Consensus 293 ~~d~~~L~~~l~~~~~e~ 310 (402)
T 4eah_A 293 LLDVKELGRGMELIRREC 310 (402)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555555554444443
No 390
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=49.13 E-value=35 Score=23.82 Aligned_cols=25 Identities=4% Similarity=0.147 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 24 KEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 24 K~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
-.+-..|+.++..+++=.+.+++-+
T Consensus 43 t~E~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 43 TCEKDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 391
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=49.02 E-value=26 Score=27.79 Aligned_cols=18 Identities=11% Similarity=0.503 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIK 24 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK 24 (150)
++|++.+.+||.++..|+
T Consensus 76 eEL~ekL~eLKkELFnLR 93 (173)
T 3bbo_Z 76 EQLQEEVVDLKGELFMLR 93 (173)
T ss_dssp HHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555544
No 392
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=49.02 E-value=27 Score=31.72 Aligned_cols=30 Identities=7% Similarity=0.179 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~L 44 (150)
++++.+..++..+.+|+.....+++.+..+
T Consensus 363 ~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~ 392 (695)
T 2j69_A 363 ELKKRIDSVEPEFNKLTGIRDEFQKEIINT 392 (695)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 393
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=48.93 E-value=55 Score=21.58 Aligned_cols=22 Identities=14% Similarity=0.430 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKV 32 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~ 32 (150)
+-|-.||+.|.+||.|...||.
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k 31 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKK 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 394
>3lnr_A Aerotaxis transducer AER2; HAMP domain, poly-HAMP domains, signaling protein; 2.64A {Pseudomonas aeruginosa}
Probab=48.88 E-value=6 Score=29.92 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 38 KEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 38 K~DV~~LK~DV~~LK~Dvs~ 57 (150)
+-|..+||+.+..+++.++.
T Consensus 141 ~G~~~~lk~~lN~~~~~L~~ 160 (175)
T 3lnr_A 141 PGKKAQITEAIDGVRERLRG 160 (175)
T ss_dssp CGGGHHHHHHHHHHHHHHCC
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 33444555555555555444
No 395
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=48.79 E-value=89 Score=26.00 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
++..|++.-..|++-|..|..=.+.+.+|+..-|.|+-++-..+..+|-|+-.+++
T Consensus 91 e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln~~~pdw~~l~k 146 (302)
T 2y3a_B 91 EMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRK 146 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhHHhhhccCChHHHHHhh
Confidence 34455555555555555555555555555555555555554445555555544444
No 396
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=48.71 E-value=21 Score=25.01 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIKV 32 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK~ 32 (150)
|+++|..|++.+..|++.+..|+.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444443
No 397
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=48.47 E-value=41 Score=30.10 Aligned_cols=50 Identities=12% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhh
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI-KEDMASIKE 60 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L-K~Dvs~lK~ 60 (150)
.|+++++....+|+..|+++. .|.+...--+.+-++-+.+| |.|++++|+
T Consensus 32 ~~~~~l~~~~~~i~~~k~~~e---~dLa~A~PaL~~A~~AL~~L~k~di~Elks 82 (536)
T 3err_A 32 AVDEQLHKQQEVIADKQMSVK---EDLDKVEPAVIEAQNAVKSIKKQHLVEVRS 82 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCHHHHHHHHh
No 398
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=48.44 E-value=30 Score=32.49 Aligned_cols=43 Identities=5% Similarity=0.186 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 19 DMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 19 Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
++..|.++..+|+.+|+.|++-.+.-+.=...+++++.++|..
T Consensus 638 e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~ 680 (692)
T 2xcs_B 638 ERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDR 680 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544444333444566666666665
No 399
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=48.26 E-value=15 Score=30.64 Aligned_cols=19 Identities=11% Similarity=0.382 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 26 DMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 26 DV~~LK~DV~~LK~DV~~L 44 (150)
++.+|++.+..|++.+++|
T Consensus 186 eie~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 400
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=47.72 E-value=57 Score=22.80 Aligned_cols=16 Identities=6% Similarity=0.428 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9603 39 EDMGSIKDDMGSIKED 54 (150)
Q Consensus 39 ~DV~~LK~DV~~LK~D 54 (150)
.-|.+-|+|+..||.+
T Consensus 85 ~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 85 SKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444444444444
No 401
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=47.67 E-value=35 Score=22.23 Aligned_cols=18 Identities=0% Similarity=0.349 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9603 14 ASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 14 ~~LK~Dv~~LK~DV~~LK 31 (150)
++|.+.+.++|.+...|+
T Consensus 12 ~EL~~~l~elk~Elf~LR 29 (63)
T 3r8s_Y 12 EELNTELLNLLREQFNLR 29 (63)
T ss_dssp HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555544
No 402
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=47.63 E-value=56 Score=21.31 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 30 IKVDMGSIKEDMGSIKDDMG 49 (150)
Q Consensus 30 LK~DV~~LK~DV~~LK~DV~ 49 (150)
++..+..+.+-+.++.+.+.
T Consensus 60 ~~~~~~~~~~~L~~i~~~L~ 79 (98)
T 3gwk_C 60 LSPKITEFAQLLEDINQQLL 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 403
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=47.24 E-value=69 Score=22.27 Aligned_cols=55 Identities=13% Similarity=0.415 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 4 EDMGSIKEDMASIKEDMVSI----KEDMASI--------KVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~L----K~DV~~L--------K~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
.||+.|++++.....-+..- |.-.... |+=+..=+..|+.|.+-++.||.-|++.
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888877766655433 3222222 2223333444555555555555555443
No 404
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=47.07 E-value=64 Score=21.81 Aligned_cols=49 Identities=6% Similarity=0.288 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HH---HHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMAS--I-KV---DMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~--L-K~---DV~~LK~DV~~LK~DV~~L 51 (150)
+.+++.|..+|..|.+.+..|.+.|+. + .+ .+..|-...+.+++.+..+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777777777753 1 22 3445555555555555444
No 405
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=46.76 E-value=74 Score=27.33 Aligned_cols=45 Identities=16% Similarity=0.359 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDD 47 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~D 47 (150)
|+.|+.|+.=...|++-|.+-.+|+.+.|....+.|+=+..+|++
T Consensus 227 k~~ikaI~~FF~~L~~kI~eA~~~~D~v~~~L~~e~~~i~~~~~~ 271 (318)
T 1qoy_A 227 KNKLKSVQNFFTTLSNTVKQANKDIDAAKLKLTTEIAAIGEIKTE 271 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccc
Confidence 445555555555555555555555555555555555555555555
No 406
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=46.67 E-value=51 Score=20.59 Aligned_cols=9 Identities=11% Similarity=0.482 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy9603 30 IKVDMGSIK 38 (150)
Q Consensus 30 LK~DV~~LK 38 (150)
||+=++.++
T Consensus 71 l~tpl~~i~ 79 (114)
T 3zcc_A 71 LRTPLTRIR 79 (114)
T ss_dssp HHHHHHHHH
T ss_pred HcChHHHHH
Confidence 333333333
No 407
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=46.43 E-value=84 Score=23.84 Aligned_cols=6 Identities=17% Similarity=0.473 Sum_probs=2.4
Q ss_pred HHHHhh
Q psy9603 54 DMASIK 59 (150)
Q Consensus 54 Dvs~lK 59 (150)
++.+|+
T Consensus 151 ~~eeLr 156 (165)
T 1gs9_A 151 DADDLQ 156 (165)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 333443
No 408
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.06 E-value=66 Score=21.72 Aligned_cols=48 Identities=6% Similarity=0.340 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHH
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKVDMGS---I---KEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~DV~~---L---K~DV~~LK~DV~~LK~Dvs~ 57 (150)
+.++..|-..|..|-+.|+.|...|+. . ...++.|-+....++..+..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666655542 1 12334444455555544443
No 409
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=45.34 E-value=91 Score=23.11 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVS 22 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~ 22 (150)
||+.|++++.....-+..
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ 40 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVI 40 (113)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 577777777766665543
No 410
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=45.27 E-value=74 Score=25.83 Aligned_cols=43 Identities=12% Similarity=0.332 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
..+..+|.++..|.+.+..++.+.+++..-+++.++-.+.+++
T Consensus 171 ~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 171 FRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555555544
No 411
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=45.20 E-value=75 Score=25.12 Aligned_cols=60 Identities=8% Similarity=0.385 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH-HHHHHHHHHhhh
Q psy9603 1 MIKEDMGSIKEDMASIKEDM-VSIKEDMASIK---------------VDMGSIKEDMGSIKDDM-GSIKEDMASIKE 60 (150)
Q Consensus 1 ~ik~Di~~Lk~dv~~LK~Dv-~~LK~DV~~LK---------------~DV~~LK~DV~~LK~DV-~~LK~Dvs~lK~ 60 (150)
++..+++.|+..|..+-+++ ..+++++.+|+ +-|..||+-+.-+=+++ ..|..-+.++|+
T Consensus 107 ~~~~~~eelr~~L~P~~eel~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~ 183 (243)
T 2a01_A 107 KWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKE 183 (243)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
No 412
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=44.87 E-value=83 Score=22.50 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9603 12 DMASIKEDMVSIKEDM 27 (150)
Q Consensus 12 dv~~LK~Dv~~LK~DV 27 (150)
+...|+.++-.|+.++
T Consensus 24 ~~~~lk~E~~~lk~E~ 39 (93)
T 3sjb_C 24 KYLAKVKERHELKEFN 39 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555444
No 413
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=44.69 E-value=48 Score=29.74 Aligned_cols=26 Identities=4% Similarity=0.279 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 27 MASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 27 V~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
|..|+.-+..+.+.|..|+++|..++
T Consensus 165 i~~l~~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 165 LRVLRSILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444443
No 414
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=44.63 E-value=16 Score=28.47 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMA 28 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~ 28 (150)
+++.+..|+.++-.|-.|++
T Consensus 51 ~~~~L~~IQ~~Lf~lga~la 70 (177)
T 1nog_A 51 IRNDLFRIQNDLFVLGEDVS 70 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444444444
No 415
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=44.57 E-value=18 Score=24.03 Aligned_cols=34 Identities=3% Similarity=0.033 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~L 44 (150)
=+...|.+-...|..-...|...+..|+.+|..|
T Consensus 6 v~~~~~~~~a~~i~~~~~~i~~~l~~l~~~v~~L 39 (96)
T 3h6p_C 6 YNYPAMMAHAGDMAGYAGTLQSLGADIASEQAVL 39 (96)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHT
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444433
No 416
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=44.45 E-value=28 Score=31.35 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK 45 (150)
.++..|+++.++|+.++..|+.-.+.-+.=...+|+++.++|
T Consensus 430 ~e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~ 471 (496)
T 2nov_A 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVK 471 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344445555555555554444444332222334444444443
No 417
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=43.94 E-value=62 Score=28.16 Aligned_cols=22 Identities=14% Similarity=0.427 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDM 34 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV 34 (150)
+.+|..|+..|+.++..++.++
T Consensus 283 ~~~l~~dl~~L~~~l~~v~~~l 304 (457)
T 3obv_E 283 AENLQKSLDQMKKQIADVERDV 304 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 418
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=43.88 E-value=22 Score=25.38 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMV--------SIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~--------~LK~DV~~LK~DV~~LK~ 39 (150)
++|..|...|.+|-..|- .|=..=..+=.+|..+|.
T Consensus 3 ~~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~ 46 (104)
T 2gtv_X 3 EKLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKN 46 (104)
T ss_dssp THHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666 444444444455555554
No 419
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=43.70 E-value=63 Score=20.78 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 11 ~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
.+|..||+-+..--+-|.+|+.-+..|=.=|..|+.
T Consensus 4 ~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~ 39 (51)
T 3kpe_A 4 GEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKN 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 420
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=43.43 E-value=48 Score=24.51 Aligned_cols=39 Identities=5% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIK---------EDMASIKVDMGSIKEDMGS 43 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK---------~DV~~LK~DV~~LK~DV~~ 43 (150)
+.++|.+.+.+|+.++..|+ .-|.+++.||+.+++=+.+
T Consensus 13 s~eEL~~~L~eLK~ELf~LRfq~atgql~~~Ir~vRR~IARi~Tvl~e 60 (120)
T 3u5e_h 13 SKEQLASQLVDLKKELAELKVQKLSRPSLPKIKTVRKSIACVLTVINE 60 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSSCCTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHHHHHHHHHHHHHH
No 421
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=43.43 E-value=58 Score=29.39 Aligned_cols=62 Identities=11% Similarity=0.250 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhcCCCCcc
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDM---GSIKDDMGSIKEDMASIKEDIGGYGVD 68 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV---~~LK~DV~~LK~Dvs~lK~DigGyg~~ 68 (150)
++||+.| ++|-.++-.+..|+.+....+..+|.-+ .+-.+++..||++|.++-+..+-||.+
T Consensus 424 e~dm~~I----A~~I~~~l~~~~~~~~~~~kl~~f~~~~~~~~~~~~~i~~lr~~V~~l~~~FP~pg~d 488 (490)
T 3ou5_A 424 EDDFRRV----VDFIDEGVNIGLEVKSKTAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFD 488 (490)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSCCSSCS
T ss_pred HHHHHHH----HHHHHHHHHhhhhhhhhhhhhHHHHHHHhcCcccHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 4555543 3444444444444433332333333322 123456788899999998888777754
No 422
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.28 E-value=42 Score=24.29 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy9603 10 KEDMASIKEDMVSIKEDMASI--KVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~L--K~DV~~LK~DV~~LK~DV~~L 51 (150)
...|-.|.+.|..|+..|..| +.|...|++-+..+.+.+..|
T Consensus 20 s~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l 63 (130)
T 2dnx_A 20 SGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQL 63 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 333444455555555554432 234444555554444444443
No 423
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=43.20 E-value=24 Score=24.28 Aligned_cols=8 Identities=13% Similarity=0.601 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy9603 16 IKEDMVSI 23 (150)
Q Consensus 16 LK~Dv~~L 23 (150)
|+.|+.+|
T Consensus 8 L~~DLeEl 15 (77)
T 1ysm_A 8 LQKDLEEV 15 (77)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 424
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=43.16 E-value=1e+02 Score=25.02 Aligned_cols=41 Identities=10% Similarity=0.412 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
++.+|+++..|.+.+..++.+...+..-++..+.-.+++++
T Consensus 173 ~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 173 LSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666654
No 425
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=43.01 E-value=91 Score=22.46 Aligned_cols=20 Identities=5% Similarity=0.323 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVS 22 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~ 22 (150)
..||+.|++++.....-+..
T Consensus 4 M~~i~eLq~e~~~~E~QL~~ 23 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVT 23 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35788888888777666544
No 426
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=42.96 E-value=57 Score=24.48 Aligned_cols=22 Identities=5% Similarity=0.317 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 14 ASIKEDMVSIKEDMASIKVDMG 35 (150)
Q Consensus 14 ~~LK~Dv~~LK~DV~~LK~DV~ 35 (150)
..|+.-|.+|+.-|+.|+.+|.
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~ 85 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLK 85 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 427
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=42.83 E-value=41 Score=26.61 Aligned_cols=19 Identities=16% Similarity=0.496 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIK 31 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK 31 (150)
.++|.+.+.+||.+.-.|+
T Consensus 75 ~eEL~ekL~eLKkELFnLR 93 (173)
T 3bbo_Z 75 TEQLQEEVVDLKGELFMLR 93 (173)
T ss_dssp HHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776665
No 428
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=42.71 E-value=1.2e+02 Score=23.68 Aligned_cols=17 Identities=12% Similarity=0.431 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhhcCCC
Q psy9603 49 GSIKEDMASIKEDIGGY 65 (150)
Q Consensus 49 ~~LK~Dvs~lK~DigGy 65 (150)
..|.+-...|+.-+.-|
T Consensus 206 ~~L~~~a~~L~~~v~~F 222 (227)
T 1qu7_A 206 AALEEQASRLTEAVAVF 222 (227)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444433
No 429
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=42.60 E-value=91 Score=22.29 Aligned_cols=43 Identities=9% Similarity=0.231 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 18 EDMVSIKEDMASIKVDMG------------SIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 18 ~Dv~~LK~DV~~LK~DV~------------~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.....|+.++-.||.++. -|..-+..|.+|+..+++.++..|+
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~ 77 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENK 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554442 2444455555555555555555443
No 430
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.57 E-value=32 Score=21.09 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSI 23 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~L 23 (150)
+|+.|..|++.+.+|+++=.+|
T Consensus 13 tkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 431
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=42.54 E-value=93 Score=24.78 Aligned_cols=47 Identities=9% Similarity=0.220 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhh
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKE----DMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~----DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
.|..|+..+.+-|..|-.|+..|++ |+..|...+..|.+....|++.
T Consensus 169 ~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~r~~~l~~~w~~L~~~ 219 (235)
T 2odv_A 169 EVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTE 219 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444432 3334444555555555444443
No 432
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=41.82 E-value=58 Score=21.29 Aligned_cols=21 Identities=14% Similarity=0.547 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKE 25 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~ 25 (150)
||+.+.+.|..|++.+++|.+
T Consensus 3 dl~~~~~si~~l~~ql~sla~ 23 (55)
T 1mof_A 3 DLREVEKSISNLEKSLTSLSE 23 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333
No 433
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=41.79 E-value=78 Score=21.29 Aligned_cols=50 Identities=4% Similarity=0.099 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVD--------------MGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~D--------------V~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
.|..-...|.+.+..|++.|..|..- .......+.+|++-+..|..-|..
T Consensus 22 ~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~ 85 (103)
T 4i0x_B 22 RARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAART 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433 334444444444444444444433
No 434
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=41.19 E-value=77 Score=21.09 Aligned_cols=39 Identities=10% Similarity=0.343 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIK--EDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK--~DV~~LK~DV~~LK~DV~~L 44 (150)
++.|.+.|..|.+.|..|- .-|.+||.--.+||..|.+|
T Consensus 4 vkaleekvkaleekvkalggggrieelkkkweelkkkieel 44 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHh
Confidence 4556666666665543331 12345555555555555544
No 435
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=41.01 E-value=75 Score=20.91 Aligned_cols=27 Identities=15% Similarity=0.449 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 15 SIKEDMVSIKEDMASIKVDMGSIKEDM 41 (150)
Q Consensus 15 ~LK~Dv~~LK~DV~~LK~DV~~LK~DV 41 (150)
+|=+-|-.||..|.+||+|...||.=+
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~l 33 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSL 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666555555444
No 436
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=40.89 E-value=86 Score=22.30 Aligned_cols=34 Identities=9% Similarity=0.314 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIK 38 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK 38 (150)
+|..|.++|..|-..|-.|=..=..+=.+|..+|
T Consensus 13 ~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K 46 (114)
T 3rmi_A 13 ELAYLRQSIDNFDITLIHILAERFRCTQAIGRLK 46 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333334444444
No 437
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=40.88 E-value=33 Score=26.98 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
|+.|++.++++-+.|--+..+|+.+|.=|.+||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 42 (166)
T 2r32_A 9 MKQIEDKIEEILSKIYHIENEIARIKKLIGERET 42 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
No 438
>3nym_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MLY; 1.90A {Neisseria meningitidis serogroup B}
Probab=40.70 E-value=99 Score=23.29 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 7 GSIKEDMASIKEDM-----VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv-----~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
++|++|++.+-+.| +-..+|+..-+.-.-.-.-=+-.|+.=-..||+||..|
T Consensus 55 ~el~eDl~sf~~~M~~~q~Al~~ed~~ta~~sL~~Amvyagnl~nfFd~ik~Di~kl 111 (128)
T 3nym_A 55 NEFKEDLXNFLDYMEVCQLALNDXNFXIASNSLFMAMIYAGNLSLIFDSIKTDISTL 111 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
No 439
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=40.69 E-value=15 Score=28.24 Aligned_cols=43 Identities=9% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV 48 (150)
+..|++.+.++.+=++.||+|-.++-.-|..+++++..+...+
T Consensus 74 v~~L~~~~~~~~~i~~~Lk~~k~k~~~~v~~~~~~i~~~i~kI 116 (148)
T 3gn4_A 74 VGTLKKRLDKFNEVVSALKDGKQEMSKQVKDLEISIDALMAKI 116 (148)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
No 440
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=40.60 E-value=77 Score=23.83 Aligned_cols=45 Identities=9% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q psy9603 9 IKEDMASIKEDMVSIKEDMASIK-----VDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 9 Lk~dv~~LK~Dv~~LK~DV~~LK-----~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
+|++|..|.+-+..++.-.+.++ .=|+.++.++..|-..|+.||.
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
No 441
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=40.49 E-value=5.9 Score=40.64 Aligned_cols=72 Identities=19% Similarity=0.434 Sum_probs=0.0
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy9603 63 GGYGVDKRGYGVDKRGYGVDKRGYGVDKSGYGVDKSGYGVDKRGYGVDKRGYGVDKRGYGVDKRGYGVNKRGY 135 (150)
Q Consensus 63 gGyg~~~~gYg~p~~gYg~~~~GYg~~~~gYg~p~~gYg~p~~gYg~p~~gYg~p~~gyg~~~~gyg~~~~gY 135 (150)
+||++..++|..+.++|..++ .|.++.+.|.++.+.|.++...|..+...|..+...|-++.+.|..+-.+|
T Consensus 1549 pg~~~~sp~~s~s~P~~s~sp-~~~p~sP~ysptSP~~s~tsP~ysptspaysptsps~s~tsp~yspts~~y 1620 (1752)
T 3h0g_A 1549 PGYGLTSPSYSPSSPGYSTSP-AYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSY 1620 (1752)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 442
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.28 E-value=52 Score=20.14 Aligned_cols=25 Identities=16% Similarity=0.480 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASI 30 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~L 30 (150)
+.++|+.|..|++.+.+||++=-+|
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 443
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=40.12 E-value=54 Score=30.88 Aligned_cols=47 Identities=11% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 17 KEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 17 K~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
+.|+..|.++..+|+.+|+.|++-.+.-+.=...+|+++.++|...+
T Consensus 401 ~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kyg 447 (716)
T 1zvu_A 401 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 447 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
No 444
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=39.93 E-value=91 Score=21.54 Aligned_cols=58 Identities=5% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
|..+...=.+|+.-|..++.++..=|..=..+|..+..+-+-+..==.|++++..-++
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 445
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=39.65 E-value=1.4e+02 Score=25.41 Aligned_cols=57 Identities=2% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD------DMGSIKEDMASIKE 60 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~------DV~~LK~Dvs~lK~ 60 (150)
.+......+...+...++.+..+..+....+..+...+.++.+ +...|.+.+..|++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~ 241 (517)
T 4ad8_A 179 QAYAAAHAAWREAVSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLSN 241 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
No 446
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=39.51 E-value=68 Score=24.09 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMA----------------SIKVDMGS-----IKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~----------------~LK~DV~~-----LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
+-|..-.++|...++-+.+|++-|+ +|..||+. |..|-.+-++=-..|++++..|
T Consensus 21 ~~iq~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~L 96 (130)
T 3zsu_A 21 TRIQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKI 96 (130)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHH
No 447
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=39.19 E-value=1.2e+02 Score=23.52 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDM-VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv-~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
.+||..|+.++....+++ ..|++-.. +.|+...++-|..||= +..|++.|..
T Consensus 150 ~~~l~~l~~~~~~~~~~~~~~l~~~~~--~~d~~~A~~~v~kL~y-~~kl~~~i~~ 202 (207)
T 3bvo_A 150 EAAMKEIESIVKAKQKEFTDNVSSAFE--QDDFEEAKEILTKMRY-FSNIEEKIKL 202 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH-HHHHHHHHHH
No 448
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=38.69 E-value=1.1e+02 Score=22.16 Aligned_cols=53 Identities=6% Similarity=0.240 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
+.+-+..|++.++.|.+.|..|+.=...|..-++..++.+....++...+..|
T Consensus 79 ~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~ 131 (142)
T 3gp4_A 79 LEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVE 131 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
No 449
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=38.46 E-value=65 Score=29.17 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
+.+...|+++.++|...++.|++-++.=+.=...+|+++.++|+
T Consensus 438 ~le~~ki~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~ 481 (500)
T 3lpx_A 438 GMEHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAIRD 481 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
No 450
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=38.35 E-value=1.3e+02 Score=22.76 Aligned_cols=57 Identities=9% Similarity=0.173 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
++..|+.=+.-+..|.+=+...++-+++.|...++-|+-...+++--..|++-|++|
T Consensus 91 L~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 91 LAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 451
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=37.97 E-value=23 Score=27.53 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH------HH-HHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVS------IK-EDMASIKVDMGSIKEDMGSIK 45 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~------LK-~DV~~LK~DV~~LK~DV~~LK 45 (150)
++++|..||.++-.|-.|++. +. ++|..|.+.|..+-+....|+
T Consensus 50 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~~l~~l~ 100 (177)
T 1woz_A 50 MKKDLERVQVELFEIGEDLSTQSSKKKIDEKYVKWLEERTVEYRKESGPVK 100 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCCCCHHHHHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCHHHHHHHHHHHHHHHhhCCCCC
No 452
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=37.88 E-value=61 Score=18.98 Aligned_cols=29 Identities=7% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVD 33 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~D 33 (150)
++..|..+|++-..+--+|.++|++|..+
T Consensus 2 evaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHh
No 453
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=37.70 E-value=1e+02 Score=21.41 Aligned_cols=48 Identities=2% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+.+--++-..|...|.+++..|+.||+....||+=....+.=+..++.
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~ 76 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 454
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=37.64 E-value=48 Score=19.85 Aligned_cols=27 Identities=0% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 13 MASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 13 v~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
|.+|.+-|.+|-..=++|...|+.||+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
No 455
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=37.56 E-value=60 Score=25.17 Aligned_cols=42 Identities=17% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HH-HHHHHHHHHHHHHHHHH
Q psy9603 7 GSIKEDMASIKEDMVSIKEDMAS------IK-VDMGSIKEDMGSIKDDM 48 (150)
Q Consensus 7 ~~Lk~dv~~LK~Dv~~LK~DV~~------LK-~DV~~LK~DV~~LK~DV 48 (150)
..+++.+..|+.++-.|-.|++. +. ++|..|.+.|..+.+.+
T Consensus 49 ~~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~~l 97 (177)
T 1nog_A 49 DDIRNDLFRIQNDLFVLGEDVSTGGKGRTVTREMIDYLEARVKEMKAEI 97 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHhhC
No 456
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=37.52 E-value=1.5e+02 Score=24.64 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
|++.-+.|+.-|..|.+=...+.+|++.-|.|+-.|-..+..++-|+-.|+.
T Consensus 95 ~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln~~~pdw~~l~k 146 (302)
T 2y3a_B 95 ILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRK 146 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhHHhhhccCChHHHHHhh
No 457
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=37.26 E-value=49 Score=23.77 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 26 DMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 26 DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+..+|+.-....++.+..||+-+..|+++++..|+
T Consensus 83 ~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 83 TAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 458
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=37.26 E-value=1.2e+02 Score=22.02 Aligned_cols=63 Identities=5% Similarity=0.221 Sum_probs=0.0
Q ss_pred hHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy9603 2 IKEDMG-------SIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGG 64 (150)
Q Consensus 2 ik~Di~-------~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigG 64 (150)
|++=|. .+.+-...|++-+..|.+.|.+|+.=...|..-+...++.+.....+......|.++
T Consensus 65 Ik~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 134 (142)
T 3gp4_A 65 LIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVERSN 134 (142)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccC
No 459
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=37.14 E-value=1.1e+02 Score=21.56 Aligned_cols=48 Identities=6% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
+..-.++-..|...|..++++|+.||.....||+=....+-=...|+.
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 460
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=37.06 E-value=60 Score=23.98 Aligned_cols=54 Identities=9% Similarity=0.303 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 1 MIKEDMGSIKED-MASIKEDMVSIKEDMASIK---------VDMGSIKEDMGSIKDDMGSIKED 54 (150)
Q Consensus 1 ~ik~Di~~Lk~d-v~~LK~Dv~~LK~DV~~LK---------~DV~~LK~DV~~LK~DV~~LK~D 54 (150)
|-+-.+++|.+- .++|.+.+.+||.+...|+ .-|..++.||+-+++-++.-+..
T Consensus 1 Ma~mK~~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atgql~~~Ir~vRR~IARi~Tvl~er~~~ 64 (120)
T 3u5e_h 1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPSLPKIKTVRKSIACVLTVINEQQRE 64 (120)
T ss_dssp -CCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTSSCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHHHHHHHHHHHHHHHHHH
No 461
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=36.51 E-value=1.6e+02 Score=23.33 Aligned_cols=60 Identities=12% Similarity=0.238 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKV-----------DMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~-----------DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
|......|+..+..++..|..|++++..++. +....|.=+..|+.++..+-.+-..+.+.
T Consensus 90 ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~ 160 (279)
T 2xhe_B 90 LQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAE 160 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=36.45 E-value=31 Score=26.89 Aligned_cols=65 Identities=12% Similarity=0.306 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCC
Q psy9603 1 MIKEDMGSIKEDMASIKEDMV-SIKEDMAS----IKVDMGSIKEDMGSIKDDM-GSIKEDMASIKEDIGGY 65 (150)
Q Consensus 1 ~ik~Di~~Lk~dv~~LK~Dv~-~LK~DV~~----LK~DV~~LK~DV~~LK~DV-~~LK~Dvs~lK~DigGy 65 (150)
.+...+..+++.|.-+.+|+. .|-.|... |..|+..+|..++-.-+++ ..+..++.+++..+.=|
T Consensus 51 ~l~~~~~~l~~~l~p~~~e~~~~l~~~~~~lr~~l~kd~ee~r~~l~py~~el~~~~~~~~e~lr~~L~Py 121 (216)
T 2lem_A 51 TLGSTVSQLQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYLDEFQKKWKEDVELYRQKASPQ 121 (216)
T ss_dssp TCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhccHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHH
No 463
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=36.23 E-value=89 Score=24.41 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
.++..+++.++.|+..+..++. ++|.....+..|...+|.-...=++++..
T Consensus 35 ~~~~~~~~~~~~l~~~l~e~~~---~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~ 85 (197)
T 1dkg_A 35 EQVDPRDEKVANLEAQLAEAQT---RERDGILRVKAEMENLRRRTELDIEKAHK 85 (197)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=36.08 E-value=50 Score=31.32 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
+.++..|+++.++|+.++..|+.-.+..+.=...+|++..++|+
T Consensus 695 ~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~ 738 (767)
T 2xkj_E 695 KLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAK 738 (767)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
No 465
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=36.00 E-value=48 Score=31.09 Aligned_cols=47 Identities=6% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 17 KEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 17 K~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
+.++..|.++..+|+.+|+.|++-.+.-+.=...+++++.++|...+
T Consensus 636 ~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg 682 (692)
T 2xcs_B 636 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFG 682 (692)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
No 466
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=35.96 E-value=88 Score=20.24 Aligned_cols=53 Identities=2% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~l 58 (150)
|..|...+..+..=|..+..+|..+..-+..+...-..=++.+..|+..|+.+
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l 60 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVEL 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
No 467
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=35.72 E-value=1.6e+02 Score=23.06 Aligned_cols=59 Identities=3% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHHHHHHhhhhcC
Q psy9603 5 DMGSIKEDMASIKEDM------VSIKEDMASIKVDMGSIKEDMGS--------IK-DDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv------~~LK~DV~~LK~DV~~LK~DV~~--------LK-~DV~~LK~Dvs~lK~Dig 63 (150)
++.+|..-|--+..-+ ..+++++..+..++=.|=.|+++ +. ++|..|...|..+-+...
T Consensus 32 tvDElns~iGla~~~~~~~~~~~~~~~~L~~IQ~~Lf~lga~la~p~~~~~~~i~~~~v~~LE~~Id~~~~~l~ 105 (193)
T 1rty_A 32 TIDELNSFIGLALAELSGQPGFEDLTAELLTIQHELFDCGGDLAIVTERKDYKLTEESVSFLETRIDAYTAEAP 105 (193)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHHHHHhhCC
No 468
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=35.69 E-value=53 Score=21.23 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 1 MIKEDMGSIKEDMASIKE---DMVSIKEDMASIKVDMGSIKEDMGSI 44 (150)
Q Consensus 1 ~ik~Di~~Lk~dv~~LK~---Dv~~LK~DV~~LK~DV~~LK~DV~~L 44 (150)
|+...|..--+.|..||. +-..++.-|..| ..||.+.+++
T Consensus 1 ~L~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~L----l~LK~~~~~~ 43 (59)
T 1d2d_A 1 MVYDKIAAQGEVVRKLKAEKAPKAKVTEAVECL----LSLKAEYKEK 43 (59)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH----HHHHHHHCSS
T ss_pred ChHHHHHHhHHHHHHHhhcCCCHHHHHHHHHHH----HHHHHHHHHH
No 469
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=35.57 E-value=1.1e+02 Score=21.34 Aligned_cols=50 Identities=2% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
.++.....=+..|...|...+..|..++..|...+....+-..++..+..
T Consensus 67 ~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~ 116 (150)
T 3ajw_A 67 NRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQT 116 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>2ibl_A Fibritin; foldon, trimerization, bacteriophage T4, HELP molecule, chaperone; 1.32A {Unidentified phage} PDB: 1ox3_A
Probab=35.56 E-value=59 Score=24.64 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 8 SIKEDMASIKEDMVSIKEDMASIKVDMGSIKE 39 (150)
Q Consensus 8 ~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~ 39 (150)
.+++.|..|.+.+..+++-|.++-.+|+.+|+
T Consensus 61 qVQkNVv~Ld~N~~~~~dkvnEvid~VN~I~~ 92 (130)
T 2ibl_A 61 SVLRNVEVLDKNIGILKTSLETANSDIKTIQE 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHHhh
No 471
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=35.46 E-value=1.1e+02 Score=23.78 Aligned_cols=53 Identities=17% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 5 DMGSIKEDMASI--KEDMVSIKEDMASIKVDM-GSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 5 Di~~Lk~dv~~L--K~Dv~~LK~DV~~LK~DV-~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
++=++.+.|.++ .+|+..|+.++...-++. ..|++-.. +.|+..+++-|..||
T Consensus 136 e~me~~E~le~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~--~~d~~~A~~~v~kL~ 191 (207)
T 3bvo_A 136 EIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFE--QDDFEEAKEILTKMR 191 (207)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
No 472
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=35.30 E-value=1.4e+02 Score=22.53 Aligned_cols=55 Identities=9% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGS-IKEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~-LK~DV~~LK~DV~~LK~Dvs~ 57 (150)
.++++.--.+|+.|+..+..+.++|..-...|.. .+..+..|++.+..|...|+.
T Consensus 15 ~~~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~ 70 (171)
T 2p2u_A 15 IRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVAT 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=34.97 E-value=72 Score=24.54 Aligned_cols=54 Identities=11% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKED 61 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~D 61 (150)
++.|.+++..|.+.| +...-...-..+..||.++..|+.=+..+++=++.|...
T Consensus 188 l~~i~~~id~lE~~v--~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~ 241 (269)
T 2bbh_A 188 LEKIDDEIDVLEEEV--LERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRD 241 (269)
T ss_dssp HHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 474
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=34.86 E-value=1.4e+02 Score=24.71 Aligned_cols=56 Identities=5% Similarity=0.156 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.++=|+.+++++..+.. ...++=+.+++.|+.++-+=|.+|+.-+.+|-+=|..++
T Consensus 358 ~eeal~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 413 (463)
T 2xz3_A 358 VDAALAAAQTNAAALSH--QRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNR 413 (463)
T ss_dssp HHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 475
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=34.81 E-value=2.2e+02 Score=24.81 Aligned_cols=60 Identities=3% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
++.++.++.|-.+|-.=|.+|++-+..+..-++.++.=.+++..+...+++.+..+.+..
T Consensus 234 ~elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~ 293 (413)
T 4hpq_C 234 QNLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTEL 293 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.76 E-value=1.5e+02 Score=22.68 Aligned_cols=55 Identities=20% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMAS---IKVDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~---LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
...|.+.+..++..+...+.=|.. ++..+..|..+.+.+...+..|+.++..-+.
T Consensus 15 qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~ 72 (154)
T 2ocy_A 15 QSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENE 72 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
No 477
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=34.42 E-value=1e+02 Score=25.24 Aligned_cols=50 Identities=12% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDM 55 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dv 55 (150)
+++|.+.|..+.+-|+.|.+=+.++.+-.......|..+++-+..|.+.+
T Consensus 1 le~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 1 MASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 478
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=34.40 E-value=63 Score=18.70 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDMVSIKEDMASIKVDM 34 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV 34 (150)
|..|..-+++|..+-.+||..|.+|-.-|
T Consensus 1 mdqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 479
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=34.26 E-value=1.1e+02 Score=20.93 Aligned_cols=58 Identities=7% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Di 62 (150)
+.||=.|+..|+ .++|.++..-|+.|+.==..+=.-++.|.+|-..|..++..++..+
T Consensus 8 ~Leml~IrKnma--~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rl 65 (72)
T 2xu6_A 8 SLEFLNIQKNST--MSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRL 65 (72)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 480
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=33.59 E-value=54 Score=21.40 Aligned_cols=28 Identities=11% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9603 32 VDMGSIKEDMGSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 32 ~DV~~LK~DV~~LK~DV~~LK~Dvs~lK 59 (150)
.|+..+.+-++.|++.+.+|.+-|-.|+
T Consensus 2 ~dl~~~~~si~~l~~ql~sla~vvlQNR 29 (55)
T 1mof_A 2 DDLREVEKSISNLEKSLTSLSEVVLQNR 29 (55)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.49 E-value=1.1e+02 Score=20.44 Aligned_cols=52 Identities=10% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKED-MASIKEDMVSIKEDMASIKVDMGSIK-----EDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 6 i~~Lk~d-v~~LK~Dv~~LK~DV~~LK~DV~~LK-----~DV~~LK~DV~~LK~Dvs~ 57 (150)
+++|++- .++|.+.+.+||.+...|+---++=. .-+..++.||+-+++-+++
T Consensus 3 ~~elr~~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~e 60 (72)
T 3j21_W 3 PSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKE 60 (72)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
No 482
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=33.45 E-value=1.2e+02 Score=25.64 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhhcCC
Q psy9603 5 DMGSIKEDMASIKEDMVSIK-----EDMASIKVDMGSIKEDMGSIKDDMGSIKE---------DMASIKEDIGG 64 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK-----~DV~~LK~DV~~LK~DV~~LK~DV~~LK~---------Dvs~lK~DigG 64 (150)
+|..|++.|..|+.++.... +...+|+.....|++.+.++++.-..-+. ||+.+-+...|
T Consensus 395 ~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (468)
T 3pxg_A 395 NLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTG 468 (468)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHTTCCCTHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHhC
No 483
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=33.33 E-value=1.6e+02 Score=23.49 Aligned_cols=60 Identities=5% Similarity=0.062 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 1 MIKEDMGSIKEDMASIKE-DMVSIKEDMASIK--VDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 1 ~ik~Di~~Lk~dv~~LK~-Dv~~LK~DV~~LK--~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
+...+++.+.+.+.+.++ .+..+|+-|...| +++...-..+-++|.+-..|.-++..++.
T Consensus 81 ~~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~ 143 (214)
T 2cly_A 81 FADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRER 143 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=33.15 E-value=79 Score=28.49 Aligned_cols=62 Identities=6% Similarity=0.006 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHH
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMG------------------------------------SIKEDMGSIK 45 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~------------------------------------~LK~DV~~LK 45 (150)
+.+.-+.++.++.+|+...+.+...|..+|..=. .||+++.+|.
T Consensus 39 ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e 118 (522)
T 3vbb_A 39 ADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCD 118 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCGGGCSSSSCCHHHHHTTCSSSHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhcC
Q psy9603 46 DDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 46 ~DV~~LK~Dvs~lK~Dig 63 (150)
+.+..+.+.+..+=.-|+
T Consensus 119 ~~~~~~~~~~~~~l~~iP 136 (522)
T 3vbb_A 119 AERIKLEAERFENLREIG 136 (522)
T ss_dssp HHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHHhCC
No 485
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=33.09 E-value=80 Score=18.91 Aligned_cols=35 Identities=6% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSI 37 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~L 37 (150)
|+.|..|.+.+++.-+-|..|.+.=..|...|..|
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~l 39 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELEQL 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 486
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=32.82 E-value=9.2 Score=39.18 Aligned_cols=78 Identities=17% Similarity=0.335 Sum_probs=0.0
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhh
Q psy9603 63 GGYGVDKRGYGVDKRGYGVDKRGYGVDKSGYGVDKSGYGVDKRGYGVDKRGYGVDKRGYGVDKRGYGVNKRGYRVIKD 140 (150)
Q Consensus 63 gGyg~~~~gYg~p~~gYg~~~~GYg~~~~gYg~p~~gYg~p~~gYg~p~~gYg~p~~gyg~~~~gyg~~~~gY~~~~~ 140 (150)
..|.++.+.|.+....|.++.+.|-+..+.|-++.+.|.++...|-.+...|..+-..|-.+-+.|..+-+.|...+|
T Consensus 1645 p~~sp~sp~y~p~sp~~sp~sp~~~p~sp~y~p~sp~y~p~sp~~sp~sp~~~p~~p~~~p~sp~~~p~~p~~~~~~~ 1722 (1733)
T 1twf_A 1645 PSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQD 1722 (1733)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchh
No 487
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=32.39 E-value=1.6e+02 Score=22.14 Aligned_cols=58 Identities=9% Similarity=0.126 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDM----GSIKDDMGSIKEDMASIK 59 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV----~~LK~DV~~LK~Dvs~lK 59 (150)
|+.-|+++...+--+.++|+.||.=|..|-.-+..+-... +.|.++++++..=+-.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~aL~~L~~q~Tslr~~~LQNR 80 (125)
T 4g2k_A 19 IEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKSLELLLRVTTEERTFSLINR 80 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=32.38 E-value=23 Score=25.80 Aligned_cols=36 Identities=14% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 10 KEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD 46 (150)
Q Consensus 10 k~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~ 46 (150)
+...+.+|.|... ...|.+|+++|..|++.+..|++
T Consensus 8 ~~~~~~~~~~~~~-~~~~~~L~~~~~~l~~~l~~l~~ 43 (182)
T 1htn_A 8 PKKIVNAKKDVVN-TKMFEELKSRLDTLSQEVALLKE 43 (182)
T ss_dssp --------------------CHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccc-hHHHHHHHHHHHHHHHHHHHHHh
No 489
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=32.32 E-value=1.5e+02 Score=21.91 Aligned_cols=52 Identities=2% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKED-MASIKEDMVSIKEDMASIKVDMGSI-----KEDMGSIKDDMGSIKEDMAS 57 (150)
Q Consensus 6 i~~Lk~d-v~~LK~Dv~~LK~DV~~LK~DV~~L-----K~DV~~LK~DV~~LK~Dvs~ 57 (150)
+++|.+- .++|.+.+.+||.+...|+---++= =.-|.+++.||+-|++-+++
T Consensus 7 a~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~e 64 (124)
T 4a17_U 7 VFKLRTQTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINE 64 (124)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHH
No 490
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=32.31 E-value=1.1e+02 Score=20.42 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKED-MASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIK 52 (150)
Q Consensus 4 ~Di~~Lk~d-v~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK 52 (150)
.||..|.+. +.+..+.+..|.+.+..|.++-.. .+++.++..-+-+||
T Consensus 1 ~d~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~-~~~~~~l~r~~HtLK 49 (105)
T 1tqg_A 1 GSHMEYLGVFVDETKEYLQNLNDTLLELEKNPED-MELINEAFRALHTLK 49 (105)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhhh
No 491
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=32.25 E-value=1.2e+02 Score=23.35 Aligned_cols=57 Identities=14% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q psy9603 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIK----EDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK----~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
..++.+..+-..|..||.....-|..|..-...|. .|...+++-+..|...-..|++
T Consensus 36 ~~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~~~~l~~~w~~L~~ 96 (322)
T 1u4q_A 36 ASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKS 96 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH
No 492
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=32.25 E-value=1.1e+02 Score=20.42 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 4 EDMGSIKEDMASIKEDM------------VSIKEDMASIKVDMGSIKEDMGS 43 (150)
Q Consensus 4 ~Di~~Lk~dv~~LK~Dv------------~~LK~DV~~LK~DV~~LK~DV~~ 43 (150)
.....|+.++-.|+.++ +-|..-+..|..|+..+++.+..
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 493
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=31.94 E-value=1.2e+02 Score=20.59 Aligned_cols=62 Identities=0% Similarity=0.208 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9603 2 IKEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63 (150)
Q Consensus 2 ik~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~Dig 63 (150)
+-+-|..+...=.+|+.-|..+++++..=|..=..+|..+..+-+.+..==.|+.++..-++
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 494
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=31.76 E-value=1.5e+02 Score=24.76 Aligned_cols=51 Identities=12% Similarity=0.268 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy9603 1 MIKEDMGSIKEDMASIKEDMVSIKE------DMASIKVDMG---SIKEDMGSIKDDMGSI 51 (150)
Q Consensus 1 ~ik~Di~~Lk~dv~~LK~Dv~~LK~------DV~~LK~DV~---~LK~DV~~LK~DV~~L 51 (150)
|.++||+.+-+-|.++-..-..++. .+.++|.-+. ..+..+.+||++|..|
T Consensus 412 ~~~edi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (483)
T 1rv3_A 412 LLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESF 471 (483)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccchhccccccchhhHHHHhhccccchhHHHHHHHHHHHHH
No 495
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=31.72 E-value=1.8e+02 Score=22.66 Aligned_cols=48 Identities=6% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 6 MGSIKEDMASIKEDM-----VSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKE 53 (150)
Q Consensus 6 i~~Lk~dv~~LK~Dv-----~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~LK~ 53 (150)
++.|.+++..|.+.| ...-.++..||.++..|++=+.-+++=+..|+.
T Consensus 173 l~~i~~~id~lE~~l~~~~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~ 225 (280)
T 4egw_A 173 LMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKR 225 (280)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
No 496
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=31.70 E-value=1e+02 Score=22.87 Aligned_cols=48 Identities=8% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc---cCCCC
Q psy9603 25 EDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYGV---DKRGY 72 (150)
Q Consensus 25 ~DV~~LK~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~DigGyg~---~~~gY 72 (150)
++|.+|.+.=..+|.+.++...|+..|-.-..+|+..+.-|++ +.-.|
T Consensus 45 eEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npY 95 (129)
T 1wlx_A 45 EEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPY 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSS
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCC
No 497
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.68 E-value=1.4e+02 Score=21.10 Aligned_cols=58 Identities=7% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9603 3 KEDMGSIKEDMASIKEDMVSIKEDMASIK------------VDMGSIKEDMGSIKDDMGSIKEDMASIKE 60 (150)
Q Consensus 3 k~Di~~Lk~dv~~LK~Dv~~LK~DV~~LK------------~DV~~LK~DV~~LK~DV~~LK~Dvs~lK~ 60 (150)
.+-.+.|+..|.+|..||..-..+-..|. .|...+-..++++..-+..|+.++..+.+
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A {Nitrosomonas europaea} SCOP: a.138.1.3
Probab=31.66 E-value=45 Score=29.84 Aligned_cols=53 Identities=11% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcCCCCc
Q psy9603 14 ASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKD-DMGSIKEDMASIKEDIGGYGV 67 (150)
Q Consensus 14 ~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~-DV~~LK~Dvs~lK~DigGyg~ 67 (150)
.+|+.|+.+||+.-+.|+. .+.|++-|..+.. .-+.++-|.++-|.-++|+|+
T Consensus 472 ~~~~~~~~~i~~~a~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (546)
T 1fgj_A 472 GPMNRAYVEIQDEYTKMQE-LSALQARVNKLEGKQTSLLDLKGTGEKISLGGLGG 525 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccccccccccchhhcccccchhH
No 499
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=31.64 E-value=1.1e+02 Score=21.00 Aligned_cols=54 Identities=9% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHh
Q psy9603 5 DMGSIKEDMASIKEDMV-----SIKEDMASIKVDMGSIKEDMGSI-----------KDDMGSIKEDMASI 58 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~-----~LK~DV~~LK~DV~~LK~DV~~L-----------K~DV~~LK~Dvs~l 58 (150)
++..|+..++.+..+-. ..+.=+..|..++.+|.+-+..+ +.+...|++++..+
T Consensus 15 ~~~~lq~~~~~~~~~~dw~~~~~~~~~~~~L~eE~gEl~e~~~~~~~~~~~~~~~~~~~~~~l~eElgDv 84 (111)
T 2oie_A 15 TLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDV 84 (111)
T ss_dssp CHHHHHHHHHHHHHTTTCGGGCCHHHHHHHHHHHHHHHHHHHHTCCCCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCcccCCHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHH
No 500
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=31.59 E-value=1.3e+02 Score=21.73 Aligned_cols=47 Identities=4% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9603 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51 (150)
Q Consensus 5 Di~~Lk~dv~~LK~Dv~~LK~DV~~LK~DV~~LK~DV~~LK~DV~~L 51 (150)
+.+.|++-..+|=+-|..|-++-=.|..-|..-+-||.+|+.-|..|
T Consensus 43 ~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 43 NEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Done!