RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9603
(150 letters)
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell
adhesion; 1.90A {Moraxella catarrhalis}
Length = 157
Score = 42.7 bits (99), Expect = 7e-06
Identities = 10/61 (16%), Positives = 24/61 (39%)
Query: 3 KEDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62
K+D K K+ + + D+ + ++ + +G+ + +A+ K DI
Sbjct: 32 KKDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADI 91
Query: 63 G 63
Sbjct: 92 A 92
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo
protein design; 1.80A {Synthetic construct} SCOP:
k.7.1.1
Length = 36
Score = 33.9 bits (77), Expect = 0.001
Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 4 EDMGSIKEDMASIKEDMVSIKEDMASIKVDMGSI 37
E + +IKE+ A+I+E++ +IKE++A+IK + I
Sbjct: 2 EKIAAIKEEQAAIEEEIQAIKEEIAAIKYLIAQI 35
Score = 29.7 bits (66), Expect = 0.052
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 2 IKEDMGSIKEDMASIKEDMVSIKEDMASI 30
IKE+ +I+E++ +IKE++ +IK +A I
Sbjct: 7 IKEEQAAIEEEIQAIKEEIAAIKYLIAQI 35
Score = 28.9 bits (64), Expect = 0.081
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 34 MGSIKEDMGSIKDDMGSIKEDMASIK 59
+ +IKE+ +I++++ +IKE++A+IK
Sbjct: 4 IAAIKEEQAAIEEEIQAIKEEIAAIK 29
Score = 28.9 bits (64), Expect = 0.083
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 18 EDMVSIKEDMASIKVDMGSIKEDMGSIK 45
E + +IKE+ A+I+ ++ +IKE++ +IK
Sbjct: 2 EKIAAIKEEQAAIEEEIQAIKEEIAAIK 29
Score = 26.6 bits (58), Expect = 0.54
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 39 EDMGSIKDDMGSIKEDMASIKEDIGG 64
E + +IK++ +I+E++ +IKE+I
Sbjct: 2 EKIAAIKEEQAAIEEEIQAIKEEIAA 27
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo
protein design; 1.80A {Synthetic construct} SCOP:
k.7.1.1 PDB: 1bb1_C 1u0i_B
Length = 36
Score = 32.0 bits (72), Expect = 0.005
Identities = 13/33 (39%), Positives = 26/33 (78%)
Query: 26 DMASIKVDMGSIKEDMGSIKDDMGSIKEDMASI 58
++A+I+ + +IKE++ +IKD + +IKE +A+I
Sbjct: 3 EIAAIEYEQAAIKEEIAAIKDKIAAIKEYIAAI 35
Score = 28.2 bits (62), Expect = 0.14
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 2 IKEDMGSIKEDMASIKEDMVSIKEDMASI 30
I+ + +IKE++A+IK+ + +IKE +A+I
Sbjct: 7 IEYEQAAIKEEIAAIKDKIAAIKEYIAAI 35
Score = 28.2 bits (62), Expect = 0.18
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMGSI 44
++A+I+ + +IKE++A+IK + +IKE + +I
Sbjct: 3 EIAAIEYEQAAIKEEIAAIKDKIAAIKEYIAAI 35
Score = 27.0 bits (59), Expect = 0.45
Identities = 11/33 (33%), Positives = 25/33 (75%)
Query: 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSI 37
++ +I+ + A+IKE++ +IK+ +A+IK + +I
Sbjct: 3 EIAAIEYEQAAIKEEIAAIKDKIAAIKEYIAAI 35
Score = 26.3 bits (57), Expect = 0.77
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 33 DMGSIKEDMGSIKDDMGSIKEDMASIKEDIGG 64
++ +I+ + +IK+++ +IK+ +A+IKE I
Sbjct: 3 EIAAIEYEQAAIKEEIAAIKDKIAAIKEYIAA 34
Score = 24.0 bits (51), Expect = 5.3
Identities = 9/33 (27%), Positives = 24/33 (72%)
Query: 19 DMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSI 51
++ +I+ + A+IK ++ +IK+ + +IK+ + +I
Sbjct: 3 EIAAIEYEQAAIKEEIAAIKDKIAAIKEYIAAI 35
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH
interactions, synthetic BI NOVO protein; HET: PHI;
2.70A {Synthetic}
Length = 34
Score = 31.6 bits (71), Expect = 0.009
Identities = 11/31 (35%), Positives = 26/31 (83%)
Query: 12 DMASIKEDMVSIKEDMASIKVDMGSIKEDMG 42
++A+IK+++ +IK+++A+IK ++ +IK+ G
Sbjct: 3 ELAAIKQELAAIKKELAAIKFELAAIKQGAG 33
Score = 28.5 bits (63), Expect = 0.13
Identities = 10/31 (32%), Positives = 24/31 (77%)
Query: 33 DMGSIKEDMGSIKDDMGSIKEDMASIKEDIG 63
++ +IK+++ +IK ++ +IK ++A+IK+ G
Sbjct: 3 ELAAIKQELAAIKKELAAIKFELAAIKQGAG 33
Score = 25.8 bits (56), Expect = 1.2
Identities = 9/24 (37%), Positives = 21/24 (87%)
Query: 2 IKEDMGSIKEDMASIKEDMVSIKE 25
IK+++ +IK+++A+IK ++ +IK+
Sbjct: 7 IKQELAAIKKELAAIKFELAAIKQ 30
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein;
2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Length = 196
Score = 30.0 bits (67), Expect = 0.22
Identities = 3/58 (5%), Positives = 16/58 (27%), Gaps = 2/58 (3%)
Query: 5 DMGSIKEDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62
D ++ I D+ + + + ++ + ++ + +
Sbjct: 3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNE--EQASHLRHSLDNFVAQA 58
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate
reduction, oxidored sulfite reduction; HET: SRM; 1.76A
{Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Length = 386
Score = 26.9 bits (60), Expect = 2.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 34 MGSIKEDMGSIKDDMGSIKEDMASIKEDIGGYG 66
M +E + ++ D+ + K S K IGG G
Sbjct: 104 MVDNEETLKALVADLKTRKFAAGSFKFPIGGTG 136
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A
{Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 25.2 bits (55), Expect = 7.0
Identities = 10/52 (19%), Positives = 29/52 (55%)
Query: 11 EDMASIKEDMVSIKEDMASIKVDMGSIKEDMGSIKDDMGSIKEDMASIKEDI 62
++MAS+KE+ +KE + + ++E M S+ + ++ + + ++++
Sbjct: 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNL 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.140 0.395
Gapped
Lambda K H
0.267 0.0527 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,527,301
Number of extensions: 173653
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 23
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.7 bits)