RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9603
         (150 letters)



>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit
           beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 134

 Score = 24.2 bits (53), Expect = 5.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 41  MGSIKDDMGSIKEDMASIKEDIGGYG 66
           M + +  + ++KED+AS K D G   
Sbjct: 103 MVADEASLKALKEDLASRKFDGGSLK 128


>d1hbna1 a.89.1.1 (A:270-549) Alpha chain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 280

 Score = 24.3 bits (53), Expect = 6.7
 Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 3/27 (11%)

Query: 114 YGVDKRGYGVDKRGYGVNKRGYRVIKD 140
           +G +   Y  DK G          + D
Sbjct: 80  FGKE---YVEDKYGLCEAPNNMDTVLD 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 600,499
Number of extensions: 31033
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 8
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (22.7 bits)