BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9604
         (133 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
           Angstroms Resolution
 pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
           Angstroms Resolution
 pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
           Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
 pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
           Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
          Length = 466

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQSG 74
           +L   Y + + ID+++GG+ E P K  G  GP    ++  QF + + GDR++       G
Sbjct: 351 KLMEQYGTPNNIDIWMGGVSE-PLKRKGRVGPLLACIIGTQFRKLRDGDRFWW---ENEG 406

Query: 75  SFTLEQLDELRKTSSGWLFCQGGNDISLVHPNN--MNKALPGNGLRPCSKLPQLDLTKWK 132
            F+++Q   L + S   + C     I+ V  NN  M+ + P + +  CS LP L+L  W+
Sbjct: 407 VFSMQQRQALAQISLPRIICD-NTGITTVSKNNIFMSNSYPRDFVN-CSTLPALNLASWR 464


>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
 pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
 pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
 pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
 pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
 pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
          Length = 467

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQSG 74
           +L   Y + + ID+++GG+ E P K  G  GP    ++  QF + + GDR++       G
Sbjct: 351 KLMEQYGTPNNIDIWMGGVSE-PLKRKGRVGPLLACIIGTQFRKLRDGDRFWW---ENEG 406

Query: 75  SFTLEQLDELRKTSSGWLFCQGGNDISLVHPNN--MNKALPGNGLRPCSKLPQLDLTKWK 132
            F+++Q   L + S   + C     I+ V  NN  M+ + P + +  CS LP L+L  W+
Sbjct: 407 VFSMQQRQALAQISLPRIICD-NTGITTVSKNNIFMSNSYPRDFVN-CSTLPALNLASWR 464


>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
           Isoform C
 pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
           Isoform C
 pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
           Isoform C At Ph 5.5
 pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
           Isoform C At Ph 5.5
 pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
           Complexed With Cyanide And Bromide At Ph 4.0
 pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
           Complexed With Cyanide And Bromide At Ph 4.0
 pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
           Isoform C At Ph 5.5
 pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
           Isoform C At Ph 5.5
 pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
           Complex
 pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
           Complex
 pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
 pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
 pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
           Thioxanthine Analog
 pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
           Thioxanthine Analog
 pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
           Thioxanthine Analog
 pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
           Thioxanthine Analog
 pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
           Thioxanthine Analog
 pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
           Thioxanthine Analog
 pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
           Thioxanthine Analog
 pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
           Thioxanthine Analog
          Length = 466

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQSG 74
           +L   Y + + ID+++GG+ E P K  G  GP    ++  QF + + GDR++       G
Sbjct: 351 KLMEQYGTPNNIDIWMGGVSE-PLKRKGRVGPLLACIIGTQFRKLRDGDRFWW---ENEG 406

Query: 75  SFTLEQLDELRKTSSGWLFCQGGNDISLVHPNN--MNKALPGNGLRPCSKLPQLDLTKWK 132
            F+++Q   L + S   + C     I+ V  NN  M+ + P + +  CS LP L+L  W+
Sbjct: 407 VFSMQQRQALAQISLPRIICD-NTGITTVSKNNIFMSNSYPRDFVN-CSTLPALNLASWR 464


>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
           Resolution
          Length = 583

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 14  EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
           ++L  +Y + D ID+++GG  E P  + G  GP    L+  QF + + GDR++       
Sbjct: 466 KKLMDLYKTPDNIDIWIGGNAE-PMVERGRVGPLLACLLGRQFQQIRDGDRFWW---ENP 521

Query: 74  GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKW 131
           G FT +Q D L+K S   L C   + I+ V  +        +    CS + +LDL+ W
Sbjct: 522 GVFTEKQRDSLQKVSFSRLICDNTH-ITKVPLHAFQANNYPHDFVDCSTVDKLDLSPW 578


>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
           Resolution Reveals Multiple Anion Binding Sites
 pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
           Catechol And Iodide At 2.7 A Resolution
 pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
           With Salicylhydroxamic Acid At 2.34 A Resolution
 pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
           With Acetyl Salicylic Acid At 2.5 A Resolution
 pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
           Lactoperoxidase At 2.5 A Resolution Shows Multiple
           Halide Binding Sites
 pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
           Its Catalyzed Product Hypothiocyanate Ion At 2.3a
           Resolution
 pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
           Mammalian Peroxidases: Crystal Structures Of Substrate
           Complexes With Lactoperoxidases From Two Different
           Species
 pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
 pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
           Mammalian Peroxidases: Crystal Structure Of
           Lactoperoxidase Complexes With Acetyl Salycylic Acid,
           Salicylhydroxamic Acid And Benzylhydroxamic Acid
 pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
           Mammalian Peroxidases: Crystal Structure Of
           Lactoperoxidase Complexes With Acetyl Salycylic Acid,
           Salicylhydroxamic Acid And Benzylhydroxamic Acid
 pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
           Mammalian Peroxidases: Crystal Structure Of
           Lactoperoxidase Complexes With Acetyl Salycylic Acid,
           Salicylhydroxamic Acid And Benzylhydroxamic Acid
 pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
           Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
           With Isoniazid At 2.7 Resolution
 pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
           Potent Inhibitor Amino-Triazole At 2.2a Resolution
 pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
           Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
           Ion, Chloride Ion Through The Substrate Diffusion
           Channel Reveals A Preferential Queue Of The Inorganic
           Substrates Towards The Distal Heme Cavity
 pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
           Indomethacin At 1.9a Resolution
 pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
           With Paracetamol At 2.4a Resolution
 pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
           Phenyl Isothiocyanate At 1.7 A Resolution
 pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
           With Nimesulide At 1.7 A Resolution
 pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
           With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
 pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
           Pyrazine-2- Carboxamide At 2 A Resolution
 pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
           With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
 pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
           With Ascorbic Acid At 2.35 A Resolution
 pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
           Pyrazinamide At 2.2a Resolution
 pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
           With P- Hydroxycinnamic Acid At 2.6 A Resolution
 pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
           With Carbon Monoxide At 2.0 A Resolution
 pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
           2.6a Resolution.
 pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
           2.45a Resolution
          Length = 595

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 14  EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
           ++L  +Y + D ID+++GG  E P  + G  GP    L+  QF + + GDR++       
Sbjct: 478 KKLMDLYKTPDNIDIWIGGNAE-PMVERGRVGPLLACLLGRQFQQIRDGDRFWW---ENP 533

Query: 74  GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKW 131
           G FT +Q D L+K S   L C   + I+ V  +        +    CS + +LDL+ W
Sbjct: 534 GVFTEKQRDSLQKVSFSRLICDNTH-ITKVPLHAFQANNYPHDFVDCSTVDKLDLSPW 590


>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
           Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
           Resolution
 pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
           Ions At 2.9a Resolution
          Length = 595

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 14  EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
           ++L  +Y + D ID+++GG  E P  + G  GP    L+  QF + + GDR++       
Sbjct: 478 KKLMDLYKTPDNIDIWIGGNAE-PMVERGRVGPLLACLLGRQFQQIRDGDRFWW---ENP 533

Query: 74  GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKW 131
           G FT +Q D L+K S   L C   + I+ V  +        +    CS + +LDL+ W
Sbjct: 534 GVFTEKQRDSLQKVSFSRLICDNTH-ITKVPLHAFQANNYPHDFVDCSTVDKLDLSPW 590


>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
           Lactoperoxidase With Fluoride Ion At 3.5a Resolution
 pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
           Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
           Resolution
          Length = 595

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 14  EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
           ++L  +Y + D ID+++GG  E P  + G  GP    L+  QF + + GDR++       
Sbjct: 478 KKLMDLYKTPDNIDIWIGGNAE-PMVERGRVGPLLACLLGRQFQQIRDGDRFWW---ENP 533

Query: 74  GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKW 131
           G FT +Q D L+K S   L C   + I+ V  +        +    CS + +LDL+ W
Sbjct: 534 GVFTEKQRDSLQKMSFSRLICDNTH-ITKVPLHAFQANNYPHDFVDCSAVDKLDLSPW 590


>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
           Lactoperoxidase With Nitrate And Iodide At 2.8 A
           Resolution
          Length = 595

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 14  EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
           ++L  +Y + D ID+++GG  E P  + G  GP    L+  QF + + GDR++       
Sbjct: 478 KKLMDLYKTPDNIDIWIGGNAE-PMVERGRVGPLLACLLGRQFQQIRDGDRFWW---ENP 533

Query: 74  GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKW 131
           G FT +Q D L+K S   L C   + I+ V  +        +    CS + +LDL+ W
Sbjct: 534 GVFTEKQRDSLQKMSFSRLICDNTH-ITKVPLHAFQANNYPHDFVDCSAVDKLDLSPW 590


>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
           Resolution Reveals The Binding Sites For Formate
 pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
           Resolution Reveals The Binding Sites For Formate
          Length = 595

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 14  EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
           ++L  +Y + D ID+++GG  E P  + G  GP    L+  QF + + GDR++       
Sbjct: 478 KKLLDLYKTPDNIDIWIGGNAE-PMVERGRVGPLLACLLGRQFQQIRDGDRFWW---ENP 533

Query: 74  GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKW 131
           G FT +Q D L+K S   L C   + I+ V  +        +    CS + +LDL+ W
Sbjct: 534 GVFTEKQRDSLQKVSFSRLICDNTH-ITKVPLHAFQANNYPHDFVDCSAIDKLDLSPW 590


>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
           Tetrahydrofuran At 2.7 A Resolution
          Length = 595

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 14  EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
           ++L  +Y + D ID+++GG  E P  + G  GP    L+  QF + + GDR++       
Sbjct: 478 KKLLDLYKTPDNIDIWIGGNAE-PMVERGRVGPLLACLLGRQFQQIRDGDRFWW---ENP 533

Query: 74  GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKW 131
           G FT +Q D L+K S   L C   + I+ V  +        +    CS + +LDL+ W
Sbjct: 534 GVFTEKQRDSLQKVSFSRLICDNTH-ITKVPLHAFQANNYPHDFVDCSAIDKLDLSPW 590


>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
 pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
           With Thiocyanate At 3.2 A Resolution
 pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
           With Thiocyanate At 3.2 A Resolution
 pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
           Lactoperoxidase With Diethylene Glycol At 2.9 A
           Resolution
 pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
           Lactoperoxidase With Diethylene Glycol At 2.9 A
           Resolution
 pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
           With Hypothiocyanite At 3.3 A Resolution
 pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
           With Hypothiocyanite At 3.3 A Resolution
 pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
           Lactoperoxidase With Diethylenediamine At 2.6a
           Resolution
 pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
           Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
           Methanone At 2.3 A Resolution
 pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
           With Pyrazinamide At 2.1 A Resolution
 pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
           With Amitrole At 2.1 A Resolution
          Length = 595

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 14  EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
           ++L  +Y + D ID+++GG  E P  + G  GP    L+  QF + + GDR++       
Sbjct: 478 KKLLDLYKTPDNIDIWIGGNAE-PMVERGRVGPLLACLLGRQFQQIRDGDRFWW---ENP 533

Query: 74  GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKW 131
           G FT +Q D L+K S   L C   + I+ V  +        +    CS + +LDL+ W
Sbjct: 534 GVFTEKQRDSLQKVSFSRLICDNTH-ITKVPLHAFQANNYPHDFVDCSAVDKLDLSPW 590


>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
           With Nitrate At 3.25 A Resolution
 pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
           With Nitrate At 3.25 A Resolution
 pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
           Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
           Resolution
 pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
           With Phosphate At 2.94 A Resolution
 pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
           With Phosphate At 2.94 A Resolution
 pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
           Formate Anion At 3.3 A Resolution
 pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
           Formate Anion At 3.3 A Resolution
          Length = 595

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 14  EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
           ++L  +Y + D ID+++GG  E P  + G  GP    L+  QF + + GDR++       
Sbjct: 478 KKLLDLYKTPDNIDIWIGGNAE-PMVERGRVGPLLACLLGRQFQQIRDGDRFWW---ENP 533

Query: 74  GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKW 131
           G FT +Q D L+K S   L C   + I+ V  +        +    CS + +LDL+ W
Sbjct: 534 GVFTEKQRDSLQKVSFSRLICDNTH-ITKVPLHAFQANNYPHDFVDCSAVDKLDLSPW 590


>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
           Resolution
          Length = 583

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 14  EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
           ++L  +Y + D ID+++GG  E P  + G  GP    L+  QF + + GDR++       
Sbjct: 466 KKLMDLYKTPDNIDIWIGGNAE-PMVERGRVGPLLACLLGRQFQQIRDGDRFWW---ENP 521

Query: 74  GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKW 131
           G FT +Q D L+K S   L C   + I+ V  +        +    CS + +LDL+ W
Sbjct: 522 GVFTEKQRDSLQKFSFSRLICDNTH-ITKVPLHAFQANNYPHDFVDCSTVDKLDLSPW 578


>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
           Mammalian Peroxidases: Crystal Structures Of Substrate
           Complexes With Lactoperoxidases From Two Different
           Species
 pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
          Length = 595

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 14  EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
           ++L  +Y + D ID+++GG  E P  + G  GP    L+  QF + + GDR++       
Sbjct: 478 KKLMDLYKTPDNIDIWIGGNAE-PMVERGRVGPLLACLLGRQFQQIRDGDRFWW---ENP 533

Query: 74  GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKW 131
           G FT +Q D L+K S   L C   + I+ V  +        +    CS + +LDL+ W
Sbjct: 534 GVFTEKQRDSLQKFSFSRLICDNTH-ITKVPLHAFQANNYPHDFVDCSTVDKLDLSPW 590


>pdb|2R55|A Chain A, Human Star-Related Lipid Transfer Protein 5
 pdb|2R55|B Chain B, Human Star-Related Lipid Transfer Protein 5
          Length = 231

 Score = 33.1 bits (74), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 65  YFLTFANQSGSFTLEQLDELRKTSSGWLFCQGGNDISL 102
           YF + A Q      E++ + R+ ++GW  C+ GN +S+
Sbjct: 19  YFQSMAAQMSEAVAEKMLQYRRDTAGWKICREGNGVSV 56


>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
           Cyclooxygenase Active Site Of Cox-2
 pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
           Cyclooxygenase Active Site Of Cox-2
 pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
           Cyclooxygenase Active Site Of Cox-2
 pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
           Cyclooxygenase Active Site Of Cox-2
 pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
           Cox-2
 pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
           Cox-2
 pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
           Cox-2
 pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
           Cox-2
          Length = 604

 Score = 32.7 bits (73), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
           +LK++YS +D+++LY   L E+P  D  +FG T   L A
Sbjct: 476 ELKALYSDIDVMELYPALLVEKPRPD-AIFGETMVELGA 513


>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
           Cyclooxygenase Channel Of Cyclooxygenase-2
 pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
           Cyclooxygenase Channel Of Cyclooxygenase-2
 pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
           Cyclooxygenase Channel Of Cyclooxygenase-2
 pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
           Cyclooxygenase Channel Of Cyclooxygenase-2
 pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
           The Cyclooxygenase Channel Of Cyclooxygenase-2
 pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
           The Cyclooxygenase Channel Of Cyclooxygenase-2
          Length = 610

 Score = 32.7 bits (73), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
           +LK++YS +D+++LY   L E+P  D  +FG T   L A
Sbjct: 482 ELKALYSDIDVMELYPALLVEKPRPD-AIFGETMVELGA 519


>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
           Cyclooxygenase Channel Of L531f Murine Cox-2
 pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
           Cyclooxygenase Channel Of L531f Murine Cox-2
          Length = 591

 Score = 32.7 bits (73), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
           +LK++YS +D+++LY   L E+P  D  +FG T   L A
Sbjct: 463 ELKALYSDIDVMELYPALLVEKPRPD-AIFGETMVELGA 500


>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non- Selective Inhibitor, Flurbiprofen
 pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non- Selective Inhibitor, Flurbiprofen
 pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non- Selective Inhibitor, Flurbiprofen
 pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non- Selective Inhibitor, Flurbiprofen
 pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non- Selective Inhibitor, Indomethacin
 pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non- Selective Inhibitor, Indomethacin
 pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non- Selective Inhibitor, Indomethacin
 pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non- Selective Inhibitor, Indomethacin
 pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
           Synthase-2)
 pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
           Synthase-2)
 pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
           Synthase-2)
 pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
           Synthase-2)
 pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Selective Inhibitor, Sc-558 In I222 Space Group
 pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Selective Inhibitor, Sc-558 In I222 Space Group
 pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Selective Inhibitor, Sc-558
 pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Selective Inhibitor, Sc-558
 pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Selective Inhibitor, Sc-558
 pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Selective Inhibitor, Sc-558
          Length = 587

 Score = 32.3 bits (72), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
           +LK++YS +D+++LY   L E+P  D  +FG T   L A
Sbjct: 459 ELKALYSDIDVMELYPALLVEKPRPD-AIFGETMVELGA 496


>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
           Cyclooxygenase Channel Of Cyclooxygenase-2
 pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
           Cyclooxygenase Channel Of Cyclooxygenase-2
 pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
           The Cyclooxygenase Channel Of Cyclooxygenase-2
 pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
           The Cyclooxygenase Channel Of Cyclooxygenase-2
 pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
           The Cyclooxygenase Channel Of Cyclooxygenase-2
 pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
           The Cyclooxygenase Channel Of Cyclooxygenase-2
          Length = 591

 Score = 32.3 bits (72), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
           +LK++YS +D+++LY   L E+P  D  +FG T   L A
Sbjct: 463 ELKALYSDIDVMELYPALLVEKPRPD-AIFGETMVELGA 500


>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
 pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
 pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
 pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
 pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
 pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
 pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
           Cox-2
 pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
           Cox-2
 pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
           Cox-2
 pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
           Cox-2
 pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
 pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
 pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
 pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
 pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
 pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
 pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
 pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
 pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
 pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
          Length = 587

 Score = 32.3 bits (72), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
           +LK++YS +D+++LY   L E+P  D  +FG T   L A
Sbjct: 459 ELKALYSDIDVMELYPALLVEKPRPD-AIFGETMVELGA 496


>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
           Cyclooxygenase Channel Of G533v Murine Cox-2
 pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
           Cyclooxygenase Channel Of G533v Murine Cox-2
          Length = 593

 Score = 32.3 bits (72), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
           +LK++YS +D+++LY   L E+P  D  +FG T   L A
Sbjct: 465 ELKALYSDIDVMELYPALLVEKPRPD-AIFGETMVELGA 502


>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
 pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
 pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
 pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
          Length = 560

 Score = 32.3 bits (72), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
           +LK++YS +D+++LY   L E+P  D  +FG T   L A
Sbjct: 459 ELKALYSDIDVMELYPALLVEKPRPD-AIFGETMVELGA 496


>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
           Cyclooxygenase Active Site Of Cox-2
 pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
           Cyclooxygenase Active Site Of Cox-2
          Length = 552

 Score = 32.3 bits (72), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
           +LK++YS +D+++LY   L E+P  D  +FG T   L A
Sbjct: 459 ELKALYSDIDVMELYPALLVEKPRPD-AIFGETMVELGA 496


>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
           Cyclooxygenase Channel Of R513h Murine Cox-2
 pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
           Cyclooxygenase Channel Of R513h Murine Cox-2
 pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
           To The Cyclooxygenase Channel Of R513h Murine Cox-2
 pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
           To The Cyclooxygenase Channel Of R513h Murine Cox-2
          Length = 592

 Score = 32.3 bits (72), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
           +LK++YS +D+++LY   L E+P  D  +FG T   L A
Sbjct: 464 ELKALYSDIDVMELYPALLVEKPHPD-AIFGETMVELGA 501


>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
           To The Cyclooxygenase Channel Of Cyclooxygenase-2
 pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
           To The Cyclooxygenase Channel Of Cyclooxygenase-2
          Length = 587

 Score = 32.3 bits (72), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
           +LK++YS +D+++LY   L E+P  D  +FG T   L A
Sbjct: 464 ELKALYSDIDVMELYPALLVEKPRPD-AIFGETMVELGA 501


>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
           Prostaglandin Bound To The Cyclooxygenase Active Site Of
           Cox-2: Prostaglandin Structure
 pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
           Prostaglandin Bound To The Cyclooxygenase Active Site Of
           Cox-2: Prostaglandin Structure
 pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
           Prostaglandin Bound To The Cyclooxygenase Active Site Of
           Cox-2: Prostaglandin Structure
 pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
           Prostaglandin Bound To The Cyclooxygenase Active Site Of
           Cox-2: Prostaglandin Structure
 pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
 pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
 pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
 pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
          Length = 552

 Score = 32.3 bits (72), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15  QLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
           +LK++YS +D+++LY   L E+P  D  +FG T   L A
Sbjct: 459 ELKALYSDIDVMELYPALLVEKPRPD-AIFGETMVELGA 496


>pdb|3RRM|C Chain C, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
           And Adp
          Length = 388

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 3   LPLFFFFELDIEQLKSVYSSVDLIDLYVGGLY---ERPTKDGGLFGPTFRNLVAEQFYRW 59
           LP      LDI   KS++ +       VG L    +  T D       +   + +  +  
Sbjct: 35  LPFASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVC 94

Query: 60  KHGDRYFLTFANQSGSFTLEQLDELRKTSS 89
            HGD+  ++  N   S  LE+L E R  +S
Sbjct: 95  FHGDQVLVSTRNALYSLDLEELSEFRTVTS 124


>pdb|1XIP|A Chain A, Crystal Structure Of The N-Terminal Domain Of Nup159
          Length = 388

 Score = 27.7 bits (60), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 3   LPLFFFFELDIEQLKSVYSSVDLIDLYVGGLY---ERPTKDGGLFGPTFRNLVAEQFYRW 59
           LP      LDI   KS++ +       VG L    +  T D       +   + +  +  
Sbjct: 35  LPFASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVC 94

Query: 60  KHGDRYFLTFANQSGSFTLEQLDELRKTSS 89
            HGD+  ++  N   S  LE+L E R  +S
Sbjct: 95  FHGDQVLVSTRNALYSLDLEELSEFRTVTS 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.142    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,404,854
Number of Sequences: 62578
Number of extensions: 181577
Number of successful extensions: 436
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 31
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)