Query psy9604
Match_columns 133
No_of_seqs 122 out of 754
Neff 6.2
Searched_HMMs 29240
Date Sat Aug 17 00:04:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q9k_A Lactoperoxidase, LPO; b 100.0 4.1E-44 1.4E-48 312.7 8.6 121 8-133 472-592 (595)
2 1d2v_C Myeloperoxidase; heme-p 100.0 8E-44 2.7E-48 303.5 9.0 121 8-133 344-465 (466)
3 1q4g_A Prostaglandin G/H synth 99.9 7.5E-29 2.6E-33 214.9 6.6 96 9-112 453-553 (553)
4 3nt1_A Prostaglandin-endoperox 99.9 1.4E-28 4.6E-33 214.6 5.3 95 9-113 453-554 (587)
5 2vog_B BCL-2-modifying factor; 53.2 6.6 0.00023 20.3 1.4 16 45-61 10-25 (27)
6 1dw9_A Cyanate lyase; cyanate 40.7 37 0.0013 24.6 4.4 46 7-56 52-116 (156)
7 1tke_A Threonyl-tRNA synthetas 19.7 1.2E+02 0.004 22.2 4.0 50 47-98 74-133 (224)
8 1qf8_A Casein kinase II; casei 18.1 26 0.0009 26.0 0.0 22 38-60 154-175 (182)
9 3l32_A Phosphoprotein; antipar 17.0 34 0.0012 19.8 0.3 13 56-68 17-29 (45)
10 2vgp_C Inner centromere protei 16.6 88 0.003 17.7 2.1 26 9-34 7-32 (43)
No 1
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=100.00 E-value=4.1e-44 Score=312.69 Aligned_cols=121 Identities=29% Similarity=0.495 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHhCCCCchhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHhhhcCcccccccCCCCCCCHHHHHHHhhc
Q psy9604 8 FFELDIEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQSGSFTLEQLDELRKT 87 (133)
Q Consensus 8 ~~~~~~~~L~~lY~~vddIDL~vGgl~E~~~~~G~~vGptf~cii~~QF~rlr~gDRf~ye~~~~~~~ft~~ql~~I~~~ 87 (133)
-+++++++|+++|++|||||||||||+|+++ +|+++||||+|||++||.|||+|||||||| ++.||++||++||++
T Consensus 472 ~~~~~~~~l~~lY~~~d~iDl~vG~l~E~~~-~g~~~Gptf~~ii~~qf~~lr~gDRf~yen---~~~ft~~ql~ei~~~ 547 (595)
T 3q9k_A 472 KNKILAKKLMDLYKTPDNIDIWIGGNAEPMV-ERGRVGPLLACLLGRQFQQIRDGDRFWWEN---PGVFTEKQRDSLQKV 547 (595)
T ss_dssp TCHHHHHHHHHHHSSGGGSCHHHHHHHSCCC-TTBSSCHHHHHHHHHHHHHHHHTCTTCTTS---BTTBCHHHHHHHTTC
T ss_pred CcHHHHHHHHHHhCCccccceeecccccccC-CCCCcCHHHHHHHHHHHHHHHhcCCCeecC---CCcCCHHHHHHHHhC
Confidence 4688899999999999999999999999999 999999999999999999999999999998 689999999999999
Q ss_pred cccchhhcccccccccccccccccCCCCCccCCCCCCCCCccCCcC
Q psy9604 88 SSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKWKV 133 (133)
Q Consensus 88 sla~iic~n~~~~~~vq~~vF~~~~~~n~~~~C~~ip~~dl~~W~~ 133 (133)
|||+|||+|++ ++.||++||..++..|++|+|++||++||++||+
T Consensus 548 sla~iic~n~~-i~~vq~~~F~~~~~~n~~v~C~~ip~~dL~~W~~ 592 (595)
T 3q9k_A 548 SFSRLICDNTH-ITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWAS 592 (595)
T ss_dssp CHHHHHHHHSS-CCEEESSTTSCCCTTTTEEEGGGSCCCCCGGGCC
T ss_pred CHHHHHhcCCC-cccccHhhccCCCCCCCCccCCCCCCCChHHhhC
Confidence 99999999987 9999999999988889999999999999999986
No 2
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=100.00 E-value=8e-44 Score=303.45 Aligned_cols=121 Identities=26% Similarity=0.466 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHhCCCCchhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHhhhcCcccccccCCCCCCCHHHHHHHhhc
Q psy9604 8 FFELDIEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQSGSFTLEQLDELRKT 87 (133)
Q Consensus 8 ~~~~~~~~L~~lY~~vddIDL~vGgl~E~~~~~G~~vGptf~cii~~QF~rlr~gDRf~ye~~~~~~~ft~~ql~~I~~~ 87 (133)
-+++++++|+++|++|||||||||+++|+++ +|+.+||||+|||++||.|||+|||||||| |+.||++|+++||++
T Consensus 344 ~d~~~~~~L~~lY~~~d~vDL~vG~laE~~~-~G~~~Gptf~~ii~~qf~rLr~gDRf~yen---~~~ft~~ql~ei~~~ 419 (466)
T 1d2v_C 344 RNLKLARKLMEQYGTPNNIDIWMGGVSEPLK-RKGRVGPLLACIIGTQFRKLRDGDRFWWEN---EGVFSMQQRQALAQI 419 (466)
T ss_dssp TCHHHHHHHHHHHSSGGGSCHHHHHHHSCCC-TTCSSCHHHHHHHHHHHHHHHHTCTTCTTS---TTTSCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhCCccccceeecccccccC-CCCCCCHHHHHHHHHHHHHHHhcCcccccC---CCcccchhhHHHHhC
Confidence 4689999999999999999999999999999 999999999999999999999999999997 789999999999999
Q ss_pred cccchhhcccccccccccc-cccccCCCCCccCCCCCCCCCccCCcC
Q psy9604 88 SSGWLFCQGGNDISLVHPN-NMNKALPGNGLRPCSKLPQLDLTKWKV 133 (133)
Q Consensus 88 sla~iic~n~~~~~~vq~~-vF~~~~~~n~~~~C~~ip~~dl~~W~~ 133 (133)
||++|||+|++ ++.||++ ||..++..|++|+|++||++||++|++
T Consensus 420 sl~~iic~n~~-~~~iq~~~~F~~~~~~n~~~~C~~ip~~dl~~w~~ 465 (466)
T 1d2v_C 420 SLPRIICDNTG-ITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWRE 465 (466)
T ss_dssp CHHHHHHHHSS-CCEEECSCTTTCCSTTTTEEEGGGSCCCCCGGGSC
T ss_pred CHHHHHHhcCC-CcccCCCccccCCCCCCCCcCcccCCCCCchhhcc
Confidence 99999999996 9999999 999999889999999999999999986
No 3
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=99.95 E-value=7.5e-29 Score=214.93 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHhCCCCchhhhhhhhcCCCCCCCCCcchHHHHHHHH-HHHHhh---hcCcccccccCCCCCCCHHHHHHH
Q psy9604 9 FELDIEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAE-QFYRWK---HGDRYFLTFANQSGSFTLEQLDEL 84 (133)
Q Consensus 9 ~~~~~~~L~~lY~~vddIDL~vGgl~E~~~~~G~~vGptf~cii~~-QF~rlr---~gDRf~ye~~~~~~~ft~~ql~~I 84 (133)
+++++++|+++|++|||||||||||+|+++ +|+++||||+|||++ ||+|+| .||||||. ++.||++|+.+|
T Consensus 453 d~~~~~~L~~lY~~~ddiDL~vG~laE~~~-~G~~~Gpt~~~ii~~~~~~~l~~~~~~d~~~~~----~~~ft~~ql~ei 527 (553)
T 1q4g_A 453 EKEMAAELEELYGDIDALEFYPGLLLEKCH-PNSIFGESMIEMGAPFSLKGLLGNPICSPEYWK----ASTFGGEVGFNL 527 (553)
T ss_dssp SSHHHHHHHHHHSSGGGCCHHHHHHHSCBC-TTCSSBHHHHHHHHHHHHHHHHTSGGGSTTTCS----GGGGTSHHHHHH
T ss_pred CHHHHHHHHHHhcChhhccccccccccccC-CCCCccHHHHHHHHHHHHHHHhhCcCCCccccC----CCCcCHHHHHHH
Confidence 689999999999999999999999999999 999999999999998 799997 59998883 579999999999
Q ss_pred hh-ccccchhhcccccccccccccccccC
Q psy9604 85 RK-TSSGWLFCQGGNDISLVHPNNMNKAL 112 (133)
Q Consensus 85 ~~-~sla~iic~n~~~~~~vq~~vF~~~~ 112 (133)
++ +|||+|||+|++ .||.++|.+|+
T Consensus 528 ~~~~sla~iic~n~~---~~p~~~F~~p~ 553 (553)
T 1q4g_A 528 VKTATLKKLVCLNTK---TCPYVSFHVPD 553 (553)
T ss_dssp HHTCCHHHHHHTTSS---SCCCCCSBCCC
T ss_pred HHhCCHHHHHHHcCC---CCCcccccCCC
Confidence 76 699999999998 79999999874
No 4
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=99.95 E-value=1.4e-28 Score=214.65 Aligned_cols=95 Identities=23% Similarity=0.345 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHhCCCCchhhhhhhhcCCCCCCCCCcchHHHHHHHHH------HHHhhhcCcccccccCCCCCCCHHH-H
Q psy9604 9 FELDIEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQ------FYRWKHGDRYFLTFANQSGSFTLEQ-L 81 (133)
Q Consensus 9 ~~~~~~~L~~lY~~vddIDL~vGgl~E~~~~~G~~vGptf~cii~~Q------F~rlr~gDRf~ye~~~~~~~ft~~q-l 81 (133)
+++++++|+++|++||||||||||++|+++ +|++|||||+|| +.| |.|+|.|||||+ |+.||.+| +
T Consensus 453 ~~~~~~~L~~lY~~~ddIDL~vGglaE~~~-pG~~vGpTf~ci-~~qf~l~~~~~~~r~gDrfw~-----~~~Ft~~qgl 525 (587)
T 3nt1_A 453 EKEMAAELKALYSDIDVMELYPALLVEKPR-PDAIFGETMVEL-GAPFSLKGLMGNPICSPQYWK-----PSTFGGEVGF 525 (587)
T ss_dssp SSHHHHHHHHHHSSGGGCCHHHHHHHSCCS-TTCSSCHHHHHH-HHHHHHHHHHTSGGGSTTTSS-----GGGGTSHHHH
T ss_pred CHHHHHHHHHHhCCHhheeeecccccccCC-CCccHHHHHHHH-HHHHHHHHHhcCcccCCcccC-----cCccChHHHH
Confidence 688999999999999999999999999999 999999999999 666 489999999994 46899888 8
Q ss_pred HHHhhccccchhhcccccccccccccccccCC
Q psy9604 82 DELRKTSSGWLFCQGGNDISLVHPNNMNKALP 113 (133)
Q Consensus 82 ~~I~~~sla~iic~n~~~~~~vq~~vF~~~~~ 113 (133)
++||++||++|||+|++. +|.++|.+++.
T Consensus 526 ~~I~~~sL~~lic~N~~~---~p~~~F~~p~~ 554 (587)
T 3nt1_A 526 KIINTASIQSLICNNVKG---CPFTSFNVQDP 554 (587)
T ss_dssp HHHHTCCHHHHHHHHSTT---CCCCCSBCC--
T ss_pred HHHHHCCHHHHHHhCCCC---CCcceeECCCc
Confidence 999999999999999994 99999999885
No 5
>2vog_B BCL-2-modifying factor; protein-protein complex, BH3, apoptosis, Pro-surviVal; 1.9A {Mus musculus}
Probab=53.15 E-value=6.6 Score=20.30 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=10.8
Q ss_pred chHHHHHHHHHHHHhhh
Q psy9604 45 GPTFRNLVAEQFYRWKH 61 (133)
Q Consensus 45 Gptf~cii~~QF~rlr~ 61 (133)
+.-..| |++||.|++.
T Consensus 10 a~KLQc-I~DQFHR~h~ 25 (27)
T 2vog_B 10 ARKLQC-IADQFHRLHT 25 (27)
T ss_dssp HHHHHH-HHHHHHHHHC
T ss_pred HHHHHH-HHHHHHHHHh
Confidence 344444 6899999863
No 6
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=40.69 E-value=37 Score=24.55 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHhCCCCchhhhhhhhcCCCCCCCCC-------------------cchHHHHHHHHHH
Q psy9604 7 FFFELDIEQLKSVYSSVDLIDLYVGGLYERPTKDGGL-------------------FGPTFRNLVAEQF 56 (133)
Q Consensus 7 ~~~~~~~~~L~~lY~~vddIDL~vGgl~E~~~~~G~~-------------------vGptf~cii~~QF 56 (133)
..+++.+++|.++++=.++. +..|.+-|. .|+. -|+|+..+|.++|
T Consensus 52 ~ls~e~A~kLa~~LgL~~e~---~~~l~~~P~-rg~~~~~~ptdP~iYR~yE~v~vYG~~~K~li~E~F 116 (156)
T 1dw9_A 52 ALPADAARLVGAKLDLDEDS---ILLLQMIPL-RGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKF 116 (156)
T ss_dssp CCCHHHHHHHHHHTTCCHHH---HHHTTSBCC-CCCCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCcCHHH---HHHHhcCCc-CCCCCCCCCCCCeehhHHHHHHHhhHHHHHHHHHHc
Confidence 46789999999999654442 557777888 7743 4666667777666
No 7
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=19.70 E-value=1.2e+02 Score=22.21 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhh----------cCcccccccCCCCCCCHHHHHHHhhccccchhhcccc
Q psy9604 47 TFRNLVAEQFYRWKH----------GDRYFLTFANQSGSFTLEQLDELRKTSSGWLFCQGGN 98 (133)
Q Consensus 47 tf~cii~~QF~rlr~----------gDRf~ye~~~~~~~ft~~ql~~I~~~sla~iic~n~~ 98 (133)
|.++|++.-++++-. +|+|+|+-.. ...+|++++.+|++. +.++|-+|-.
T Consensus 74 S~~HlL~~A~~~~~~~~~~~~g~~~~~g~y~d~~~-~~~~t~edl~~IE~~-m~~iI~~~~p 133 (224)
T 1tke_A 74 SCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDL-DRTLTQEDVEALEKR-MHELAEKNYD 133 (224)
T ss_dssp HHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEEC-SSCCCHHHHHHHHHH-HHHHHTTCCB
T ss_pred HHHHHHHHHHHHHCCCcEEEECCccCCeEEEEEeC-CCCCCHHHHHHHHHH-HHHHHhCCCC
Confidence 667788777776642 4678887642 346999999999865 7778877765
No 8
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=18.11 E-value=26 Score=25.97 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.3
Q ss_pred CCCCCCcchHHHHHHHHHHHHhh
Q psy9604 38 TKDGGLFGPTFRNLVAEQFYRWK 60 (133)
Q Consensus 38 ~~~G~~vGptf~cii~~QF~rlr 60 (133)
+ .||..|++|..++..+|..++
T Consensus 154 i-DGAyFGtsFph~f~~~~p~l~ 175 (182)
T 1qf8_A 154 T-DGAYFGTGFPHMLFMVHPEYR 175 (182)
T ss_dssp S-BGGGTCSSHHHHHHHHCGGGS
T ss_pred c-ccceecCchHHHHHHHccccc
Confidence 6 899999999999998887664
No 9
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=16.95 E-value=34 Score=19.80 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=10.1
Q ss_pred HHHhhhcCccccc
Q psy9604 56 FYRWKHGDRYFLT 68 (133)
Q Consensus 56 F~rlr~gDRf~ye 68 (133)
-+++|.|+|||=-
T Consensus 17 VrkmKtGe~FfKi 29 (45)
T 3l32_A 17 VRQMRSGERFLKI 29 (45)
T ss_dssp HHHHTTTCCHHHH
T ss_pred HHHHHccccHHHH
Confidence 4688999999733
No 10
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=16.58 E-value=88 Score=17.75 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHhCCCCchhhhhhhhc
Q psy9604 9 FELDIEQLKSVYSSVDLIDLYVGGLY 34 (133)
Q Consensus 9 ~~~~~~~L~~lY~~vddIDL~vGgl~ 34 (133)
.+.+.+.|++.|-++-|+|-+.|-+.
T Consensus 7 ~~~L~~~l~~Q~~~p~D~d~iFG~I~ 32 (43)
T 2vgp_C 7 GNLLTQAIRQQYYKPIDVDRMYGTID 32 (43)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHTTTSC
T ss_pred hHHHHHHHHHHHccCCCHHHHcCCCC
Confidence 35667788888766558888888765
Done!