Query psy9604
Match_columns 133
No_of_seqs 122 out of 754
Neff 6.2
Searched_HMMs 13730
Date Sat Aug 17 00:04:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9604.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9604hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g1cxp.1 a.93.1.2 (A:,C:) Myelo 100.0 5.8E-45 4.2E-49 314.1 9.8 122 8-133 448-569 (570)
2 d1q4ga1 a.93.1.2 (A:74-584) Pr 100.0 2.4E-32 1.7E-36 233.0 7.5 101 8-112 410-511 (511)
3 d1cvua1 a.93.1.2 (A:74-583) Pr 100.0 2.1E-32 1.5E-36 233.4 6.5 99 8-110 411-510 (511)
4 d1rutx4 g.39.1.3 (X:114-146) L 59.7 0.58 4.2E-05 24.1 -0.8 13 58-70 8-20 (33)
5 d1ijwc_ a.4.1.2 (C:) HIN recom 28.7 19 0.0014 19.4 2.3 16 72-87 2-17 (47)
6 d1qf8a_ g.41.4.1 (A:) Casein k 18.6 12 0.0009 25.7 0.1 23 37-60 147-169 (173)
7 d1p80a1 c.23.16.3 (A:598-753) 17.9 33 0.0024 21.9 2.3 60 7-67 79-146 (156)
8 d1xd7a_ a.4.5.55 (A:) Hypothet 17.5 33 0.0024 21.3 2.2 33 44-93 94-126 (127)
9 d1j2oa1 g.39.1.3 (A:1-30) Rhom 15.7 13 0.00097 18.5 -0.2 10 59-68 19-28 (30)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 15.5 49 0.0036 15.9 2.0 13 47-59 9-21 (30)
No 1
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=5.8e-45 Score=314.08 Aligned_cols=122 Identities=24% Similarity=0.437 Sum_probs=116.5
Q ss_pred CCHHHHHHHHHHhCCCCchhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHhhhcCcccccccCCCCCCCHHHHHHHhhc
Q psy9604 8 FFELDIEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQSGSFTLEQLDELRKT 87 (133)
Q Consensus 8 ~~~~~~~~L~~lY~~vddIDL~vGgl~E~~~~~G~~vGptf~cii~~QF~rlr~gDRf~ye~~~~~~~ft~~ql~~I~~~ 87 (133)
.+++++++|+++|++|+|||||||+++|+++ +|++|||||+|||++||.|||+|||||||| ++.||++||++||++
T Consensus 448 ~~~~~~~~L~~lY~~vddIDL~vG~laE~~~-~G~~~Gptf~~ii~~qF~rlr~gDRF~yen---~~~ft~~ql~~i~~~ 523 (570)
T g1cxp.1 448 RNLKLARKLMEQYGTPNNIDIWMGGVSEPLK-RKGRVGPLLACIIGTQFRKLRDGDRFWWEN---EGVFSMQQRQALAQI 523 (570)
T ss_dssp TCHHHHHHHHHHHSSTTSSCHHHHHHHSCCC-TTSSSCHHHHHHHHHHHHHHHHTCTTCTTS---TTTSCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhCChhHhhHhcchhcCCCC-CCCCCCHHHHHHHHHHHHHHhcCCCCeecC---CCCCCHHHHHHHHhc
Confidence 4789999999999999999999999999999 999999999999999999999999999997 689999999999999
Q ss_pred cccchhhcccccccccccccccccCCCCCccCCCCCCCCCccCCcC
Q psy9604 88 SSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKWKV 133 (133)
Q Consensus 88 sla~iic~n~~~~~~vq~~vF~~~~~~n~~~~C~~ip~~dl~~W~~ 133 (133)
|||+|||+|++....+|+++|..++..|+.|+|++||++||++|+|
T Consensus 524 tla~iic~n~~~~~~~q~~~f~~~~~~n~~v~C~~ip~~dl~~W~e 569 (570)
T g1cxp.1 524 SLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWRE 569 (570)
T ss_dssp CHHHHHHHHSSCCEEECSCTTTCCSTTTTEEEGGGSCCCCCGGGSC
T ss_pred CHHHHhhcCCCCccccCccceeCCCCCCCccccCcCCCCCcHhhcc
Confidence 9999999999955556899999999999999999999999999997
No 2
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]}
Probab=99.97 E-value=2.4e-32 Score=233.04 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHhCCCCchhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHhhhcCcccccccCCCCCC-CHHHHHHHhh
Q psy9604 8 FFELDIEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQSGSF-TLEQLDELRK 86 (133)
Q Consensus 8 ~~~~~~~~L~~lY~~vddIDL~vGgl~E~~~~~G~~vGptf~cii~~QF~rlr~gDRf~ye~~~~~~~f-t~~ql~~I~~ 86 (133)
-+++++++|+++|++|||||||||+++|+++ +|+++||||+|||++||.|+|.|||||||+..+|+.| ++.|+++||+
T Consensus 410 ~d~~~~~~L~~lYg~vddVDL~vG~laE~~~-~G~~~GpT~~~ii~~qf~r~~~gDRf~~e~~~~~~~f~~~~ql~~i~~ 488 (511)
T d1q4ga1 410 GEKEMAAELEELYGDIDALEFYPGLLLEKCH-PNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLVKT 488 (511)
T ss_dssp SSSHHHHHHHHHHSSGGGCCHHHHHHHSCBC-TTCSSBHHHHHHHHHHHHHHHHTSGGGSTTTCSGGGGTSHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCHhHhhHhhchhccccC-CCCCCCHHHHHHHHHHHHHHHhcCCccccCcCCCCCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999 9999999999999999999999999999997677666 8899999999
Q ss_pred ccccchhhcccccccccccccccccC
Q psy9604 87 TSSGWLFCQGGNDISLVHPNNMNKAL 112 (133)
Q Consensus 87 ~sla~iic~n~~~~~~vq~~vF~~~~ 112 (133)
+||++|||+|+++ +|...|.+|+
T Consensus 489 ~tL~~iic~N~~~---~~~~~f~vpd 511 (511)
T d1q4ga1 489 ATLKKLVCLNTKT---CPYVSFHVPD 511 (511)
T ss_dssp CCHHHHHHTTSSS---CCCCCSBCCC
T ss_pred CCHHHHHHhCCCC---CCcccccCCC
Confidence 9999999999984 5666677764
No 3
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.97 E-value=2.1e-32 Score=233.41 Aligned_cols=99 Identities=21% Similarity=0.243 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHhCCCCchhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHhhhcCcccccccCCCCCCC-HHHHHHHhh
Q psy9604 8 FFELDIEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQSGSFT-LEQLDELRK 86 (133)
Q Consensus 8 ~~~~~~~~L~~lY~~vddIDL~vGgl~E~~~~~G~~vGptf~cii~~QF~rlr~gDRf~ye~~~~~~~ft-~~ql~~I~~ 86 (133)
-+++++++|+++|++|||||||||+++|+++ +|+++||||.||+++||.|+|.|||||||+..+|+.|| +.|+++||+
T Consensus 411 ~d~~~~~~L~~lY~~vddVDL~vG~laE~~~-~g~~~GpT~~~ii~~qf~r~r~gDRf~~e~~~~p~~ft~~~ql~~i~~ 489 (511)
T d1cvua1 411 GEKEMAAELKALYSDIDVMELYPALLVEKPR-PDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINT 489 (511)
T ss_dssp SSSHHHHHHHHHHSSGGGCCHHHHHHHSCCS-TTCSSCHHHHHHHHHHHHHHHHTSGGGSTTTSSGGGGTSHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCChhHhhhhhchhccCcC-CCCCCCHHHHHHHHHHHHHHHhcCCccccCCCCCCCcCcHHHHHHHHH
Confidence 4789999999999999999999999999999 99999999999999999999999999999988899999 569999999
Q ss_pred ccccchhhcccccccccccccccc
Q psy9604 87 TSSGWLFCQGGNDISLVHPNNMNK 110 (133)
Q Consensus 87 ~sla~iic~n~~~~~~vq~~vF~~ 110 (133)
+|||+|||+|+++ +|...|.+
T Consensus 490 ~tLa~iic~N~~~---~p~~~f~v 510 (511)
T d1cvua1 490 ASIQSLICNNVKG---CPFTSFNV 510 (511)
T ss_dssp CCHHHHHHHHSTT---CCCCCSBC
T ss_pred CcHHHHHHhCCCC---CCCccccC
Confidence 9999999999884 67777754
No 4
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=59.68 E-value=0.58 Score=24.13 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=10.4
Q ss_pred HhhhcCccccccc
Q psy9604 58 RWKHGDRYFLTFA 70 (133)
Q Consensus 58 rlr~gDRf~ye~~ 70 (133)
||-.||||.|-|+
T Consensus 8 ~LVPGDRFHyvNG 20 (33)
T d1rutx4 8 RLVPGDRFHYING 20 (33)
T ss_dssp BCCTTCEEEEETT
T ss_pred cccCCceeEEecC
Confidence 4667999999874
No 5
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=28.73 E-value=19 Score=19.37 Aligned_cols=16 Identities=0% Similarity=0.216 Sum_probs=13.0
Q ss_pred CCCCCCHHHHHHHhhc
Q psy9604 72 QSGSFTLEQLDELRKT 87 (133)
Q Consensus 72 ~~~~ft~~ql~~I~~~ 87 (133)
.|..+|++|++++++.
T Consensus 2 R~~~lt~~q~~~a~~l 17 (47)
T d1ijwc_ 2 RPRAINKHEQEQISRL 17 (47)
T ss_dssp CCCSSCHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHH
Confidence 4779999999988753
No 6
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.55 E-value=12 Score=25.73 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=19.5
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhh
Q psy9604 37 PTKDGGLFGPTFRNLVAEQFYRWK 60 (133)
Q Consensus 37 ~~~~G~~vGptf~cii~~QF~rlr 60 (133)
.+ .||..||+|..++..+|..++
T Consensus 147 ~i-DGA~FG~sFph~fl~~yp~l~ 169 (173)
T d1qf8a_ 147 HT-DGAYFGTGFPHMLFMVHPEYR 169 (173)
T ss_dssp TS-BGGGTCSSHHHHHHHHCGGGS
T ss_pred cc-cchhccCchHHHHHHHCcccC
Confidence 46 899999999999998887654
No 7
>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}
Probab=17.89 E-value=33 Score=21.89 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHhCCCCchh--------hhhhhhcCCCCCCCCCcchHHHHHHHHHHHHhhhcCcccc
Q psy9604 7 FFFELDIEQLKSVYSSVDLID--------LYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFL 67 (133)
Q Consensus 7 ~~~~~~~~~L~~lY~~vddID--------L~vGgl~E~~~~~G~~vGptf~cii~~QF~rlr~gDRf~y 67 (133)
..++++++-+++.|++-.-|= |--.|+++... +|-..+....--+.++|.+.-...|||-
T Consensus 79 ~~~~~~~~~i~e~~~~~K~I~aic~g~~~La~agl~~~~~-~gv~~~~~~~~~~~~~f~~~~a~hR~w~ 146 (156)
T d1p80a1 79 ADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGE-EGIVEADSADGSFMDELLTLMAAHRVWS 146 (156)
T ss_dssp HTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGTTTCCSSCC-TTEEEESSCCHHHHHHHHHHHHTCSCGG
T ss_pred hcchHHHHHHHHHHHcCCeEEEECchHHHHHHcCCCcCCC-CeEEEcCCccHHHHHHHHHHHhcccCcc
Confidence 456888999999995533221 22334444433 5544444444456788888888899993
No 8
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=17.50 E-value=33 Score=21.26 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHHHHhhhcCcccccccCCCCCCCHHHHHHHhhccccchh
Q psy9604 44 FGPTFRNLVAEQFYRWKHGDRYFLTFANQSGSFTLEQLDELRKTSSGWLF 93 (133)
Q Consensus 44 vGptf~cii~~QF~rlr~gDRf~ye~~~~~~~ft~~ql~~I~~~sla~ii 93 (133)
+|....|.+...|.+++. .-.+.++++||++||
T Consensus 94 ~~~~~~~~l~~~~~~~~~-----------------~~~~~L~~~TL~DLl 126 (127)
T d1xd7a_ 94 VGKKIQNALDETFESVQR-----------------AMENELASKSLKDVM 126 (127)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------HHHHHHTTCBHHHHC
T ss_pred ccccchhhHHHHHHHHHH-----------------HHHHHHcCCCHHHHh
Confidence 455556666666666541 223457888998876
No 9
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.73 E-value=13 Score=18.49 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=5.8
Q ss_pred hhhcCccccc
Q psy9604 59 WKHGDRYFLT 68 (133)
Q Consensus 59 lr~gDRf~ye 68 (133)
|+.-||+|.+
T Consensus 19 L~a~Dr~WH~ 28 (30)
T d1j2oa1 19 LKAIDQYWHE 28 (30)
T ss_dssp EECSSSEECT
T ss_pred HHHHHHHHhc
Confidence 3445777754
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.53 E-value=49 Score=15.88 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHh
Q psy9604 47 TFRNLVAEQFYRW 59 (133)
Q Consensus 47 tf~cii~~QF~rl 59 (133)
.|+|||+-.|-.+
T Consensus 9 ifac~i~lfffai 21 (30)
T d2axtt1 9 IFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5889999888766
Done!