RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9604
(133 letters)
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 111 bits (279), Expect = 3e-30
Identities = 41/84 (48%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 12 DIEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFAN 71
I++L+ +Y SVD IDLYVGGL E+P GGL GPTF ++ EQF R + GDR++
Sbjct: 295 TIQKLRRLYKSVDDIDLYVGGLSEKPVP-GGLVGPTFACIIGEQFRRLRRGDRFWYENGG 353
Query: 72 QSGSFTLEQLDELRKTSSGWLFCQ 95
Q SFT QL+E+RK S + C
Sbjct: 354 QPSSFTPAQLNEIRKVSLARIICD 377
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 94.3 bits (235), Expect = 1e-23
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 13 IEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQ 72
E+LK +Y D IDL+VGGL E+P GGL GPTF ++AEQF R + GDR++ + N
Sbjct: 430 AEKLKELYGDPDDIDLWVGGLAEKPVP-GGLVGPTFACIIAEQFLRLRDGDRFW--YEN- 485
Query: 73 SGSFTLEQLDELRKTSSGWLFCQGGNDISLVHPN 106
G FT EQL+E+RKT+ + C I+ V PN
Sbjct: 486 PGVFTGEQLEEIRKTTLARVICDNTPGITRVQPN 519
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 83.9 bits (208), Expect = 5e-20
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 13 IEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQ 72
E+LK +Y IDL+VGG+ E G GPT L+AEQF R + GDR++ + N
Sbjct: 335 REKLKRLYGHPGNIDLFVGGILEDLL-PGARVGPTLACLLAEQFRRLRDGDRFW--YEN- 390
Query: 73 SGSFTLEQLDELRKTSSGWLFCQGGNDISLVHPN 106
G F+ QL +++KTS + C G++I+ V +
Sbjct: 391 PGVFSPAQLTQIKKTSLARVLCDNGDNITRVQED 424
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 71.2 bits (175), Expect = 1e-15
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 14 EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
+L SVY VD IDL+VGGL E GGL G TF ++A+QF R + GDR+F + N
Sbjct: 330 ARLASVYGDVDQIDLWVGGLAEDHVN-GGLVGETFSTIIADQFTRLRDGDRFF--YEND- 385
Query: 74 GSFTLEQLDELRKTS 88
L+++ ++ T+
Sbjct: 386 -DLLLDEIADIENTT 399
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 57.3 bits (139), Expect = 1e-10
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
Query: 13 IEQLKSVYS-SVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFAN 71
+E+L +Y + +DLYVGG+ E +K GG G FR ++ +QF R + GDR++ F N
Sbjct: 431 LERLAELYGNDLSKLDLYVGGMLE--SKGGGP-GELFRAIILDQFQRLRDGDRFW--FEN 485
Query: 72 -QSGSFTLEQLDELRKTS 88
++G FT E+++E+R T+
Sbjct: 486 VKNGLFTAEEIEEIRNTT 503
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 57.1 bits (138), Expect = 2e-10
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 14 EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
+++ +Y D ID+++GGL E G GP F L+ +Q + GDR++ + N
Sbjct: 451 DKILDLYKHPDNIDVWLGGLAED-FLPGARTGPLFACLIGKQMKALRDGDRFW--WENS- 506
Query: 74 GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKWK 132
FT Q ELRK S + C ++ V P+ C +P ++L W+
Sbjct: 507 NVFTDAQRRELRKHSLSRVICD-NTGLTRVPPDAFQLGKFPEDFVSCDSIPGINLEAWR 564
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 55.9 bits (135), Expect = 3e-10
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 13 IEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQ 72
++L +Y D +DL+VGGL E G ++ EQF R GDR++ N
Sbjct: 290 AKKLAELYGDPDDVDLWVGGLLE-KKVPPARLGELLATIILEQFKRLVDGDRFYYVNYNP 348
Query: 73 SGSFTLEQLDELRK 86
G E+L++L
Sbjct: 349 FGKSGKEELEKLIS 362
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 52.4 bits (126), Expect = 6e-09
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 23 VDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDR-YFLTFANQSGSFTLEQL 81
+D +DL+VGGL E+ GG+ G TF + EQ R + GDR Y+L + +G L QL
Sbjct: 483 LDNVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDGDRFYYL--SRTAGLDLLNQL 540
Query: 82 DE 83
+
Sbjct: 541 EN 542
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 49.7 bits (119), Expect = 5e-08
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 14 EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
+L +Y + D ID+++GG+ E P GG GP L++ QF R + GDR++
Sbjct: 312 RKLLDLYGTPDNIDIWIGGVAE-PLVPGGRVGPLLACLISRQFRRIRDGDRFWW---ENP 367
Query: 74 GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCS 121
G FT EQ + LR S + C N +P + +P S
Sbjct: 368 GVFTEEQRESLRSVSLSRIICD----------NTGITKVPRDPFQPNS 405
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 33.0 bits (76), Expect = 0.029
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 14 EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVA 53
+L+ +Y VD ++ YVG E P + P +VA
Sbjct: 402 AELEELYGDVDAVEFYVGLFAEDP-RPNSPLPPLMVEMVA 440
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 30.7 bits (70), Expect = 0.18
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 13 IEQLKSVY-SSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFAN 71
+L+ VY V+ +DL VG L E G FR + R K DR+F
Sbjct: 383 AAELREVYGGDVEKVDLLVGLLAEPLPPGFGFSDTAFRIFILMASRRLKS-DRFFTNDFR 441
>gnl|CDD|148105 pfam06296, DUF1044, Protein of unknown function (DUF1044). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 120
Score = 28.7 bits (65), Expect = 0.54
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 39 KDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFA---NQSGSFTLEQLDELRKTSSGWL 92
K GG +R +V +K GDR F F N + + ++L L+K + +L
Sbjct: 55 KSGG-----YRTIVL-----FKSGDRAFFLFGFAKNDRANISDKELAALKKLAKIYL 101
>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 27.1 bits (60), Expect = 2.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 99 DISLVHPNNMNKALPGN--GLRPCSKLPQLDLTKW 131
D+ +HP NM K L G G PC+ ++L K+
Sbjct: 112 DVDGLHPVNMGKLLLGETDGFIPCTPAGIIELLKY 146
>gnl|CDD|240288 PTZ00143, PTZ00143, deoxyuridine 5'-triphosphate
nucleotidohydrolase; Provisional.
Length = 155
Score = 26.6 bits (59), Expect = 2.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 57 YRWKHGDRYFLTFANQSGSFTLEQLDELRKTSSG 90
Y K GDR + T E +DEL +T+ G
Sbjct: 112 YTIKKGDRLVQLVSFDGEPITFELVDELDETTRG 145
>gnl|CDD|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase.
Length = 606
Score = 26.1 bits (57), Expect = 7.8
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 12 DIEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLT-FA 70
D + LK VDL+D+ VG YE L TF L YR++ GD +T F
Sbjct: 382 DDDALKEDLEIVDLVDVKVGHYYE-------LVVTTFTGL-----YRYRVGDILMVTGFY 429
Query: 71 NQSGSF 76
N + F
Sbjct: 430 NNAPQF 435
>gnl|CDD|143193 cd05716, Ig_pIgR, Immunoglobulin (Ig)-like domain in the
polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin
(Ig)-like domain in the polymeric Ig receptor (pIgR).
pIgR delivers dimeric IgA and pentameric IgM to mucosal
secretions. Polymeric immunoglobulin (pIgs) are the
first defense against pathogens and toxins. IgA and IgM
can form polymers via an 18-residue extension at their
c-termini referred to as the tailpiece. pIgR transports
pIgs across mucosal epithelia into mucosal secretions.
Human pIgR is a glycosylated type I transmembrane
protein, comprised of a 620 residue extracellular
region, a 23 residue transmembrane region, and a 103
residue cytoplasmic tail. The extracellular region
contains five domains that share sequence similarity
with Ig variable (v) regions.
Length = 98
Score = 25.1 bits (55), Expect = 8.1
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 49 RNLVAEQFYRWKHGDRYFLTFANQSGSFTLEQLDELRKTSSGWLFCQGGND 99
+V+E + ++ R LT +G FT+ L++LRK +GW +C G+D
Sbjct: 37 LIIVSEGSVQSQYEGRVSLTDDPDNGVFTVT-LNQLRKEDAGWYWCGVGDD 86
>gnl|CDD|213686 TIGR02167, Liste_lipo_26, bacterial surface protein 26-residue
repeat. This model describes a tandem peptide repeat
sequence of 25 or 26 residues, found in predicted
surface proteins (often lipoproteins) from Listeria
monocytogenes, L. innocua, Enterococcus faecalis,
Lactobacillus plantarum, Mycoplasma mycoides,
Helicobacter hepaticus, and other species.
Length = 26
Score = 23.6 bits (52), Expect = 9.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 120 CSKLPQLDLTKWKV 133
CS L LDL+ W
Sbjct: 5 CSSLTSLDLSNWDT 18
>gnl|CDD|221304 pfam11904, GPCR_chapero_1, GPCR-chaperone. This domain, and the
associated ANK family repeat pfam00023 domain, together
act as a chaperone for biogenesis and folding of the DP
receptor for prostaglandin D2.
Length = 290
Score = 25.5 bits (56), Expect = 9.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 57 YRWKHGDRYFLTFANQSGSFTLEQLDELRKT 87
+W+ GDR FL +S + +L ++D K
Sbjct: 12 MKWQRGDRSFLFKGEESDAGSLIEVDHDDKE 42
>gnl|CDD|217985 pfam04245, NA37, 37-kD nucleoid-associated bacterial protein.
Length = 320
Score = 25.7 bits (57), Expect = 9.8
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 24 DLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQSGSFTLEQLDE 83
+ ++ + L+ + G F + A + + G+ F+ F+ + + L E
Sbjct: 27 EAVEELLKELHRKYNAKKGKGFGEFESPFASELNEYLEGEDDFVEFSKKI----AKHLYE 82
Query: 84 LR---KTSSGWLF 93
+ G L
Sbjct: 83 ELQHPNIAGGDLL 95
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.142 0.450
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,973,393
Number of extensions: 599313
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 27
Length of query: 133
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 47
Effective length of database: 7,123,158
Effective search space: 334788426
Effective search space used: 334788426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)