RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9604
(133 letters)
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 97.2 bits (241), Expect = 6e-25
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 14 EQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQS 73
+L Y + + ID+++GG+ E + G GP ++ QF + + GDR++
Sbjct: 350 RKLMEQYGTPNNIDIWMGGVSEPLKR-KGRVGPLLACIIGTQFRKLRDGDRFW---WENE 405
Query: 74 GSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKWK 132
G F+++Q L + S + C ++ N CS LP L+L W+
Sbjct: 406 GVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWR 464
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 96.3 bits (239), Expect = 2e-24
Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 10/128 (7%)
Query: 13 IEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQ 72
+LK++YS +D+++LY L E+P + +FG T L A + G+ +
Sbjct: 457 AAELKALYSDIDVMELYPALLVEKP-RPDAIFGETMVELGAPFSLKGLMGNPICSPQYWK 515
Query: 73 SGSFTLE-QLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKL-------- 123
+F E + S L C N + S
Sbjct: 516 PSTFGGEVGFKIINTASIQSLICNNVKGCPFTSFNVQDPQPTKTATINASASHSRLDDIN 575
Query: 124 PQLDLTKW 131
P + + +
Sbjct: 576 PTVLIKRR 583
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 95.0 bits (235), Expect = 6e-24
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 13 IEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQ 72
++L +Y + D ID+++GG E + G GP L+ QF + + GDR+ +
Sbjct: 477 AKKLMDLYKTPDNIDIWIGGNAEPMVERGR-VGPLLACLLGRQFQQIRDGDRF---WWEN 532
Query: 73 SGSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKWK 132
G FT +Q D L+K S L C I+ V + + CS + +LDL+ W
Sbjct: 533 PGVFTEKQRDSLQKVSFSRLICD-NTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWA 591
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 87.8 bits (217), Expect = 2e-21
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 13 IEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQ 72
+L+ +Y +D ++ Y G L E+ +FG + + A + G+ +
Sbjct: 457 AAELEELYGDIDALEFYPGLLLEKC-HPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWK 515
Query: 73 SGSFTLE-QLDELRKTSSGWLFCQGGNDISLV 103
+ +F E + ++ + L C V
Sbjct: 516 ASTFGGEVGFNLVKTATLKKLVCLNTKTCPYV 547
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 31.9 bits (72), Expect = 0.028
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 57 YRWKHGDRYFLTFANQSGSFTLEQLDELRKTSSGWLFCQ 95
R+ + +G FT+ + +LR+ SG +C+
Sbjct: 65 RTMAWTSRFTIWDDPDAGFFTV-TMTDLREEDSGHYWCR 102
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 30.2 bits (68), Expect = 0.077
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 42 GLFGPTFRNLVAEQFYRWKHGDRYFLTFANQSGSFTLEQLDELRKTSSGWLFC 94
+V + K R + + + SFT+ L+ L + +G +C
Sbjct: 34 PPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTV-TLENLTEEDAGTYWC 85
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 30.3 bits (68), Expect = 0.088
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 58 RWKHGDRYFLTFANQSGSFTLEQLDELRKTSSGWLFCQ---GGNDIS 101
+ DR + ++ +FT+ +++L KT + +C GND+
Sbjct: 57 QEVKRDRVSIKDNQKNRTFTV-TMEDLMKTDADTYWCGIEKTGNDLG 102
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 30.2 bits (68), Expect = 0.10
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 56 FYRWKHGDRYFLTFANQSGSFTLEQLDELRKTSSGWLFC 94
+ K+ R LT ++G+F + + +L + SG C
Sbjct: 55 YVSSKYAGRANLTNFPENGTFVV-NIAQLSQDDSGRYKC 92
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 30.4 bits (68), Expect = 0.12
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 53 AEQFYRWKHGDRYFLTFANQSGSFTLEQLDELRKTSSGWLFCQGGND 99
A+ YR + ++ S + R S+ W Q +D
Sbjct: 185 AQPVYRRANVPVFWGERRYVSHFEPVGSGGAYRGPSTAWFRFQLMDD 231
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 29.0 bits (65), Expect = 0.28
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 57 YRWKHGDRYFLTFANQSGSFTLEQLDELRKTSSGWLFC 94
R L + G + ++ L+ SG C
Sbjct: 57 SHPVQVGRIILEDYHDHGLLRV-RMVNLQVEDSGLYQC 93
>3el6_A Erythromycin dehydratase; dehydratase double hotdog fold
CIS-proline, acyltransferase, antibiotic biosynthesis;
1.85A {Saccharopolyspora erythraea}
Length = 313
Score = 29.6 bits (67), Expect = 0.29
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 30 VGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYF 66
+ Y+ + G +GP+F+ L A W+ D +
Sbjct: 179 LDDHYDGLAEQGYEYGPSFQALRA----AWRKDDSVY 211
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase,
isoform A, structural genomics, structural genomics
consortium, SGC transferase; 1.85A {Homo sapiens} PDB:
2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A*
3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Length = 312
Score = 29.2 bits (66), Expect = 0.35
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 62 GDRYFLTFANQSGSFTLEQLDELRKTSSGWLFCQG 96
G R L + + +++ T W+ +G
Sbjct: 120 GSRTILYYDRSLPDVSATDFEKVDLTQFKWIHIEG 154
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 28.1 bits (63), Expect = 0.50
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 63 DRYFLTFANQSGSFTLEQLDELRKTSSGWLFC---QGGNDIS 101
+R + + FT+ +++LR + +G +C +GG D
Sbjct: 61 NRVSIRDNQRDFIFTVT-MEDLRMSDAGIYWCGITKGGLDPM 101
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 28.7 bits (64), Expect = 0.63
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 30 VGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDR 64
G +Y+ G +GP F+ ++ G+R
Sbjct: 989 QGDVYKDLRLRGYDYGPFFQLVLE----SDLEGNR 1019
>3kg7_A CURH; polyketide synthase, double hotdog fold, dehydratase, lyase;
2.77A {Lyngbya majuscula}
Length = 293
Score = 27.3 bits (61), Expect = 1.4
Identities = 5/37 (13%), Positives = 10/37 (27%), Gaps = 4/37 (10%)
Query: 30 VGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYF 66
L E ++GP + + W +
Sbjct: 150 TDTLTEIYASISLVYGPMLQAVRQ----AWIGEETSL 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase,
denitrification, electron transport, periplasmic; HET:
HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2
b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A*
1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Length = 567
Score = 27.4 bits (61), Expect = 1.4
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 59 WKHGDRYFLTFANQS 73
RYF+T AN
Sbjct: 349 LDGSHRYFITAANAR 363
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping;
HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP:
a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A*
1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Length = 543
Score = 27.4 bits (61), Expect = 1.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 59 WKHGDRYFLTFANQS 73
W RYF+T AN S
Sbjct: 331 WDSSHRYFMTAANNS 345
>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein
structure initiati alpha-beta protein, unknown,
structure genomics; 2.00A {Mesorhizobium loti}
Length = 151
Score = 26.6 bits (59), Expect = 1.9
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 26 IDLYVGGLYERPTKDGGLFGPTFRNLVAEQF--YRWKHGDRYFLTFANQSGSFTLEQLDE 83
VG + GG+ + + Y W + +FTL
Sbjct: 43 FKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPT 102
Query: 84 ---LRKTSSGW 91
LR SG+
Sbjct: 103 GTHLRMEQSGF 113
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR
family, hydrolase; 2.35A {Escherichia coli} SCOP:
b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Length = 644
Score = 26.4 bits (59), Expect = 3.2
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 90 GWLFCQGGNDISLVHPNNMNKALPG 114
G+L + P M K + G
Sbjct: 34 GFLEVDAQKSY-FIPPPQMKKVMHG 57
>3kg9_A CURK; polyketide synthase, double hotdog fold, dehydratase, lyase;
1.70A {Lyngbya majuscula}
Length = 296
Score = 26.1 bits (58), Expect = 3.8
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 30 VGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYF 66
+ Y++ G +G +F+ + WK +
Sbjct: 159 IQQHYQQFKSRGIDYGNSFQGIKQ----LWKGQGKAL 191
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 4.0
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 36/135 (26%)
Query: 10 ELDIEQLKSVYSSVDLIDLYVGGLY--ERPTK---DGGLFGPTFRNLVAEQFYRWKHGDR 64
+L E ++ + +LI Y+ +RP + LF R + +
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF----RAVGEGNA-------Q 155
Query: 65 YFLTFANQSGSFTLEQLDELR---KTSSGWL--FCQGGNDI--SLV-HPNNMNKALPGNG 116
F Q G+ T + +ELR +T + + + L+ + K G
Sbjct: 156 LVAIFGGQ-GN-TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-QG 212
Query: 117 LRPCSKLPQLDLTKW 131
L++ +W
Sbjct: 213 ---------LNILEW 218
>3kg6_A CURF; polyketide synthase, double hotdog fold, dehydratase, lyase;
2.70A {Lyngbya majuscula}
Length = 285
Score = 26.1 bits (58), Expect = 4.0
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 30 VGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYF 66
+ Y G +G +F+ + WK +
Sbjct: 154 IEEHYREYRSKGIDYGSSFQGIKQ----LWKGQGKAL 186
>1tuw_A Tetracenomycin polyketide synthesis protein TCMI; dimeric ???
ferredoxin-like fold tetracenomycin C biosynthes unknown
function; 1.90A {Streptomyces glaucescens} SCOP:
d.58.4.8
Length = 109
Score = 24.9 bits (54), Expect = 6.3
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 3/19 (15%)
Query: 44 FGPTFRNL---VAEQFYRW 59
+ + L AE FY W
Sbjct: 86 YAQDWEELKDSKAEVFYSW 104
>3kg8_A CURJ; polyketide synthase, double hotdog fold, dehydratase, lyase;
2.45A {Lyngbya majuscula}
Length = 308
Score = 25.4 bits (56), Expect = 6.4
Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 4/37 (10%)
Query: 30 VGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYF 66
+Y+ G +FR + W
Sbjct: 164 SAEIYQHLWDRQIHLGQSFRWIEQ----VWLGEGEVL 196
>2rfr_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP:
d.17.4.28
Length = 155
Score = 25.1 bits (55), Expect = 6.4
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 61 HGDR-----YFLTFANQSGSFTLEQL----DELRKTSSGWLF 93
GD + + F SG+F ++ R+T +GW
Sbjct: 93 EGDTATARCHSVVFRCVSGTFGSHRVSANRWTFRRTPAGWRA 134
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 25.3 bits (56), Expect = 8.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 101 SLVHPNNMNKALPGNGLRPCSKLPQLDL 128
+L+HP M +P + LP LDL
Sbjct: 1 TLLHPLLMRNGDSRPLHKPTTPLPSLDL 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.142 0.450
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,094,853
Number of extensions: 110820
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 27
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)