RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9604
(133 letters)
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 122 bits (306), Expect = 4e-34
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 13 IEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQ 72
+L Y + + ID+++GG+ E G GP ++ QF + + GDR++
Sbjct: 453 ARKLMEQYGTPNNIDIWMGGVSEPLK-RKGRVGPLLACIIGTQFRKLRDGDRFWWE---N 508
Query: 73 SGSFTLEQLDELRKTSSGWLFCQGGNDISLVHPNNMNKALPGNGLRPCSKLPQLDLTKWK 132
G F+++Q L + S + C ++ N CS LP L+L W+
Sbjct: 509 EGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWR 568
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 511
Score = 94.6 bits (235), Expect = 2e-24
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 13 IEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDRYFLTFANQ 72
+LK++YS +D+++LY L E+P + +FG T L A + G+ +
Sbjct: 416 AAELKALYSDIDVMELYPALLVEKP-RPDAIFGETMVELGAPFSLKGLMGNPICSPQYWK 474
Query: 73 SGSFTLE-QLDELRKTSSGWLFCQGGNDISLVHPN 106
+F E + S L C N
Sbjct: 475 PSTFGGEVGFKIINTASIQSLICNNVKGCPFTSFN 509
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 511
Score = 93.5 bits (232), Expect = 6e-24
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 13 IEQLKSVYSSVDLIDLYVGGLYERPTKDGGLFGPTFRNLVAEQFYRWKHGDR-YFLTFAN 71
+L+ +Y +D ++ Y G L E+ +FG + + A + G+ +
Sbjct: 415 AAELEELYGDIDALEFYPGLLLEKC-HPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWK 473
Query: 72 QSGSFTLEQLDELRKTSSGWLFCQGGNDISLVHPN 106
S + ++ + L C V +
Sbjct: 474 ASTFGGEVGFNLVKTATLKKLVCLNTKTCPYVSFH 508
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 25.4 bits (54), Expect = 2.6
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 52 VAEQFYRW--KHGDRYFLTFANQSGSFTLEQLDELRKTSSGWLFCQG---GNDISLVHPN 106
V E R + D L + T +L + + L G +++V PN
Sbjct: 4 VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
>d1k0ga_ d.161.1.1 (A:) P-aminobenzoate synthase component I
{Escherichia coli [TaxId: 562]}
Length = 453
Score = 25.3 bits (54), Expect = 3.2
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 46 PTFRNLVAEQFYRWKHGDRYFLTFANQSGSFTLE 79
P L+ +R + YF ++ + L
Sbjct: 6 PAVITLL----WRQDAAEFYFSRLSHLPWAMLLH 35
>d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus
[TaxId: 1396]}
Length = 120
Score = 24.6 bits (53), Expect = 3.4
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 10 ELDIEQLKSVYSSVDLIDLYVGGLYERPTKD--GGLFGPTFRNLVAEQFYRWKHGDRYFL 67
+L +Q+++ Y V +L E+ T+D G L + W+ ++ F+
Sbjct: 11 KLTAKQIQAAYLLV-ENELMESNNEEKRTQDEMANELGINRTTL-----WEWRTKNQDFI 64
Query: 68 TFANQSGSFTLEQ 80
F ++ L +
Sbjct: 65 AFKSEVADSFLAE 77
>d1tuwa_ d.58.4.8 (A:) Tetracenomycin polyketide synthesis protein
TcmI {Streptomyces glaucescens [TaxId: 1907]}
Length = 106
Score = 24.4 bits (53), Expect = 3.4
Identities = 6/17 (35%), Positives = 7/17 (41%), Gaps = 3/17 (17%)
Query: 46 PTFRNL---VAEQFYRW 59
+ L AE FY W
Sbjct: 87 QDWEELKDSKAEVFYSW 103
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 25.0 bits (54), Expect = 3.6
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 6 FFFFELDIEQLKSVYS-SVDLIDLYVGGLYERPTKD---GGLFGPTFRNLVAEQFYRWKH 61
FF F + +E + + + + Y R + G F P +L + H
Sbjct: 697 FFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMH 756
Query: 62 GDRYFLTFANQSGSFTLEQLDELRKTSSGWL 92
DR+ + + E++ L K W
Sbjct: 757 HDRFKVFADYEEYVKCQERVSALYKNPREWT 787
>d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 102
Score = 23.9 bits (52), Expect = 4.6
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 20/81 (24%)
Query: 46 PTFRNLVAEQFYRWKHGDRYFLTFANQSGSFTLEQLDELRKTSSGWLF------------ 93
P + K G R ++ + +L +R ++
Sbjct: 7 PKITRTSTQS---VKVGGRITISTDSSISKASL-----IRYGTATHTVNTDQRRIPLTLT 58
Query: 94 CQGGNDISLVHPNNMNKALPG 114
GGN S P++ ALPG
Sbjct: 59 NNGGNSYSFQVPSDSGVALPG 79
>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
{Methylobacillus flagellatus [TaxId: 405]}
Length = 395
Score = 24.2 bits (52), Expect = 6.3
Identities = 5/39 (12%), Positives = 11/39 (28%)
Query: 48 FRNLVAEQFYRWKHGDRYFLTFANQSGSFTLEQLDELRK 86
+L EQ R + G+ + + +
Sbjct: 124 IPHLNFEQAVRAFGLQGNVDYRVDDWGADIVRNIPAFQT 162
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.142 0.450
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 523,132
Number of extensions: 22608
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 10
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)