Query psy9606
Match_columns 356
No_of_seqs 194 out of 797
Neff 3.4
Searched_HMMs 29240
Date Sat Aug 17 00:06:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.8 8.3E-21 2.9E-25 145.7 5.5 59 70-128 4-62 (63)
2 4gat_A Nitrogen regulatory pro 99.8 1.8E-20 6.2E-25 144.9 5.4 59 70-128 6-64 (66)
3 4hc9_A Trans-acting T-cell-spe 99.7 2.1E-18 7.3E-23 144.9 5.2 62 67-128 53-114 (115)
4 2vut_I AREA, nitrogen regulato 99.7 6.9E-18 2.4E-22 120.9 4.0 43 73-115 1-43 (43)
5 1gnf_A Transcription factor GA 99.7 4E-17 1.4E-21 118.5 4.7 43 72-114 3-45 (46)
6 2kae_A GATA-type transcription 99.6 1.8E-17 6.2E-22 129.8 0.3 50 71-121 6-57 (71)
7 4hc9_A Trans-acting T-cell-spe 99.4 5.6E-14 1.9E-18 118.1 5.5 44 71-114 3-46 (115)
8 4g1u_A Hemin transport system 77.1 0.49 1.7E-05 46.1 0.0 24 273-296 2-25 (357)
9 1dl6_A Transcription factor II 73.1 1.6 5.3E-05 32.3 1.8 30 73-104 11-40 (58)
10 3oka_C N-terminal His-affinity 71.9 1.3 4.6E-05 27.2 1.0 14 274-287 3-16 (21)
11 3k7a_M Transcription initiatio 66.6 2.2 7.4E-05 40.6 1.8 33 72-104 20-52 (345)
12 2yjp_A Putative ABC transporte 63.2 1.5 5.2E-05 38.3 0.0 17 273-289 2-18 (291)
13 2d74_B Translation initiation 62.9 2.9 0.0001 36.5 1.7 37 74-117 105-141 (148)
14 1k81_A EIF-2-beta, probable tr 62.6 1.4 4.7E-05 30.0 -0.3 28 75-102 2-29 (36)
15 1ydx_A Type I restriction enzy 61.3 1.7 5.8E-05 40.3 0.0 14 273-286 2-15 (406)
16 1pft_A TFIIB, PFTFIIBN; N-term 61.2 2.9 0.0001 29.2 1.2 30 73-104 5-34 (50)
17 2crr_A Stromal membrane-associ 60.8 6.4 0.00022 33.8 3.5 36 73-109 29-64 (141)
18 3cw2_K Translation initiation 57.8 4.1 0.00014 35.1 1.8 29 74-102 104-132 (139)
19 2iqj_A Stromal membrane-associ 57.3 6.9 0.00024 33.4 3.1 37 72-109 26-62 (134)
20 3b9f_I Protein C inhibitor; mi 56.9 2.3 7.7E-05 41.1 0.0 20 273-292 2-21 (395)
21 2owa_A Arfgap-like finger doma 56.7 6.6 0.00022 33.8 2.9 36 73-109 36-71 (138)
22 1nee_A EIF-2-beta, probable tr 55.1 4.3 0.00015 35.0 1.4 29 74-102 103-131 (138)
23 2b0o_E UPLC1; arfgap, structur 53.5 8 0.00027 34.9 3.0 37 72-109 41-77 (301)
24 3pnr_B Pbicp-C; immunoglobulin 53.4 3.1 0.0001 37.5 0.3 30 273-302 2-31 (187)
25 4bbr_M Transcription initiatio 52.3 3.4 0.00012 39.5 0.4 32 73-104 21-52 (345)
26 4fl4_A Glycoside hydrolase fam 51.5 3.8 0.00013 32.9 0.5 26 273-298 2-27 (88)
27 2crw_A ARF GAP 3, ADP-ribosyla 51.1 8.8 0.0003 33.4 2.8 37 72-109 28-64 (149)
28 2p57_A GTPase-activating prote 49.0 8.3 0.00028 33.6 2.3 36 73-109 37-72 (144)
29 3dwd_A ADP-ribosylation factor 47.8 12 0.00041 32.8 3.1 37 72-109 37-73 (147)
30 3k1f_M Transcription initiatio 47.1 5.4 0.00018 36.5 0.8 33 72-104 20-52 (197)
31 2px7_A 2-C-methyl-D-erythritol 46.7 4.1 0.00014 35.5 0.0 14 274-287 3-16 (236)
32 3uau_A JLPA, surface-exposed l 46.6 4.1 0.00014 39.7 0.0 14 273-286 2-15 (379)
33 2g2k_A EIF-5, eukaryotic trans 45.5 6.2 0.00021 35.2 0.9 29 74-102 97-127 (170)
34 2c0d_A Thioredoxin peroxidase 45.2 4.5 0.00015 35.5 0.0 29 274-302 3-36 (221)
35 2es4_D Lipase chaperone; prote 45.2 4.5 0.00015 39.1 0.0 15 274-288 2-16 (332)
36 2zjr_Z 50S ribosomal protein L 44.7 6.8 0.00023 29.4 0.9 29 67-103 24-52 (60)
37 3etc_A AMP-binding protein; ad 44.6 4.6 0.00016 39.8 0.0 22 273-294 2-23 (580)
38 1jxh_A Phosphomethylpyrimidine 44.3 4.7 0.00016 36.2 0.0 16 273-288 2-17 (288)
39 4axs_A Carbamate kinase; oxido 43.0 5.1 0.00017 38.6 0.0 13 274-286 3-15 (332)
40 3dfz_A SIRC, precorrin-2 dehyd 42.5 5.2 0.00018 36.3 0.0 16 273-288 2-17 (223)
41 2e9h_A EIF-5, eukaryotic trans 42.1 7.6 0.00026 34.2 1.0 29 74-102 104-134 (157)
42 2olm_A Nucleoporin-like protei 42.1 12 0.00042 32.0 2.3 36 73-109 25-60 (140)
43 3v2d_5 50S ribosomal protein L 41.3 8.3 0.00028 28.9 0.9 29 67-103 24-52 (60)
44 1d1d_A Protein (capsid protein 40.9 5.7 0.0002 37.5 0.0 15 274-288 2-16 (262)
45 2xci_A KDO-transferase, 3-deox 40.9 5.7 0.0002 36.9 0.0 15 273-287 2-16 (374)
46 1t3o_A Carbon storage regulato 40.2 8.6 0.00029 31.7 0.9 19 273-291 2-20 (95)
47 3sub_A ADP-ribosylation factor 40.2 18 0.00062 32.2 3.1 35 74-109 23-57 (163)
48 2axq_A Saccharopine dehydrogen 38.2 6.7 0.00023 38.9 0.0 15 273-287 2-16 (467)
49 3a5i_A Flagellar biosynthesis 38.1 6.7 0.00023 38.8 0.0 13 274-286 3-15 (389)
50 1svj_A Potassium-transporting 37.9 6.8 0.00023 33.6 0.0 13 274-286 3-15 (156)
51 3jue_A Arfgap with coiled-coil 37.4 20 0.00069 33.9 3.2 37 71-108 43-79 (368)
52 1uoz_A Putative cellulase; hyd 37.1 7.5 0.00026 37.7 0.2 17 273-289 2-18 (315)
53 4b1m_A Levanase; hydrolase, CB 36.6 7.3 0.00025 33.5 0.0 13 274-286 3-15 (185)
54 1qwz_A NPQTN specific sortase 35.6 11 0.00038 34.4 1.0 14 274-287 2-15 (235)
55 1jr2_A Uroporphyrinogen-III sy 35.0 8.1 0.00028 34.8 0.0 18 196-213 3-20 (286)
56 3lju_X ARF-GAP with dual PH do 34.6 23 0.00079 34.1 3.1 32 73-105 34-65 (386)
57 2c07_A 3-oxoacyl-(acyl-carrier 34.2 8.5 0.00029 34.0 0.0 16 274-289 3-18 (285)
58 1jr2_A Uroporphyrinogen-III sy 33.9 8.6 0.0003 34.6 0.0 18 274-292 3-20 (286)
59 2qrj_A Saccharopine dehydrogen 33.8 8.7 0.0003 38.0 0.0 14 274-287 3-16 (394)
60 1yx4_A 26S proteasome non-ATPa 33.6 8.8 0.0003 33.3 0.0 14 274-287 3-16 (132)
61 3c3r_A Programmed cell death 6 33.2 9 0.00031 36.9 0.0 14 276-289 3-16 (380)
62 3odm_A Pepcase, PEPC, phosphoe 33.1 9.1 0.00031 39.8 0.0 13 274-286 3-15 (560)
63 4e4j_A Arginine deiminase; L-a 32.0 9.7 0.00033 37.2 0.0 21 274-294 3-27 (433)
64 2l72_A Tgadf, actin depolymeri 31.9 9.7 0.00033 32.0 0.0 22 274-295 3-26 (139)
65 1k8w_A TRNA pseudouridine synt 31.3 10 0.00035 36.8 0.0 18 273-290 2-19 (327)
66 3k9f_C DNA topoisomerase 4 sub 31.3 10 0.00035 36.2 0.0 13 274-286 3-15 (268)
67 2d2a_A SUFA protein; iron-sulf 31.3 10 0.00035 32.5 0.0 13 274-286 3-15 (145)
68 2oar_A Large-conductance mecha 31.3 10 0.00035 34.1 0.0 13 274-286 3-15 (174)
69 3b0g_A NII3, nitrite reductase 30.8 10 0.00036 38.8 0.0 14 274-287 3-16 (591)
70 3cio_A ETK, tyrosine-protein k 30.5 11 0.00036 34.6 0.0 12 274-285 3-14 (299)
71 2apo_A Probable tRNA pseudouri 30.4 11 0.00036 36.9 0.0 15 273-287 2-16 (357)
72 3tut_A RNA 3'-terminal phospha 30.3 11 0.00037 37.0 0.0 14 274-287 2-15 (358)
73 1qyp_A RNA polymerase II; tran 30.1 7 0.00024 28.1 -1.0 33 73-105 15-54 (57)
74 1dcq_A PYK2-associated protein 30.0 32 0.0011 30.5 3.0 37 72-109 16-52 (278)
75 3o47_A ADP-ribosylation factor 29.9 24 0.00082 32.6 2.3 37 72-109 36-72 (329)
76 1ovx_A ATP-dependent CLP prote 28.7 25 0.00086 27.2 1.8 29 74-103 19-49 (67)
77 2oxn_A Beta-hexosaminidase; TI 27.3 15 0.00052 35.3 0.5 12 272-283 329-340 (340)
78 3tla_A MCCF; serine protease, 27.1 13 0.00045 36.0 0.0 13 274-286 5-17 (371)
79 2bu3_A ALR0975 protein; phytoc 26.7 14 0.00046 34.8 0.0 16 272-287 11-26 (254)
80 3oti_A CALG3; calicheamicin, T 26.6 14 0.00047 33.7 0.0 9 277-285 4-12 (398)
81 2ds5_A CLPX, ATP-dependent CLP 26.5 35 0.0012 24.9 2.1 30 73-103 11-42 (51)
82 4faj_A PRGZ; substrate binding 23.6 17 0.00057 36.0 0.0 16 197-212 2-17 (564)
83 2ygr_A Uvrabc system protein A 23.6 17 0.00057 40.0 0.0 15 273-287 2-16 (993)
84 3llq_A Aquaporin Z 2; aquapori 23.6 17 0.00057 33.8 0.0 12 273-284 9-20 (256)
85 2pi2_E Replication protein A 1 23.6 17 0.00058 31.3 0.0 21 274-294 3-23 (142)
86 1tyg_B YJBS; alpha beta barrel 22.6 18 0.00062 28.5 0.0 15 274-288 3-17 (87)
87 1wig_A KIAA1808 protein; LIM d 22.4 29 0.00099 25.3 1.1 39 74-112 32-71 (73)
88 3ako_A Venus; fluorescent prot 22.3 18 0.00063 32.5 0.0 24 273-296 2-27 (173)
89 2j6v_A UV endonuclease, UVDE; 22.2 19 0.00064 33.6 0.0 14 274-287 3-16 (301)
90 4amu_A Ornithine carbamoyltran 22.0 19 0.00065 35.3 0.0 13 274-286 3-15 (365)
91 4g1u_A Hemin transport system 21.8 19 0.00066 34.9 0.0 20 197-216 5-24 (357)
92 1sg7_A Putative cation transpo 21.7 19 0.00066 29.6 0.0 16 274-289 3-18 (96)
93 1nwa_A Peptide methionine sulf 21.7 19 0.00066 32.9 0.0 15 274-288 3-17 (203)
94 1tvm_A PTS system, galactitol- 21.2 33 0.0011 27.4 1.3 11 275-285 4-14 (113)
95 3cng_A Nudix hydrolase; struct 20.9 31 0.0011 28.8 1.1 32 73-104 3-35 (189)
96 2yln_A Putative ABC transporte 20.6 21 0.00072 30.9 0.0 16 274-289 3-18 (283)
97 3ces_A MNMG, tRNA uridine 5-ca 20.5 20 0.00068 37.5 -0.2 14 274-287 3-16 (651)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.82 E-value=8.3e-21 Score=145.73 Aligned_cols=59 Identities=49% Similarity=1.070 Sum_probs=52.7
Q ss_pred CCCCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCccccCCCCCCCCCCC
Q psy9606 70 KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPK 128 (356)
Q Consensus 70 ~~~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~slkk~~i~kRkRk~K 128 (356)
.+....|.+|+|++||+||+|++|.+|||||||||+++++.||+.+++++|++|+|+.+
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk~~ 62 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS 62 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCCCCcCcCCCccccccCCCC
Confidence 45678999999999999999999999999999999999999999999999999999864
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.81 E-value=1.8e-20 Score=144.89 Aligned_cols=59 Identities=46% Similarity=0.940 Sum_probs=55.2
Q ss_pred CCCCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCccccCCCCCCCCCCC
Q psy9606 70 KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPK 128 (356)
Q Consensus 70 ~~~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~slkk~~i~kRkRk~K 128 (356)
...+..|.+|+|++||+||+|++|.+|||||||||+++++.||+.++++.|++|+|+..
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~~ 64 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNSA 64 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSCC
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCCCchhhccccccccccCCC
Confidence 45679999999999999999999999999999999999999999999999999998754
No 3
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.72 E-value=2.1e-18 Score=144.92 Aligned_cols=62 Identities=47% Similarity=1.006 Sum_probs=54.3
Q ss_pred cCCCCCCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCccccCCCCCCCCCCC
Q psy9606 67 IIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPK 128 (356)
Q Consensus 67 ~~t~~~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~slkk~~i~kRkRk~K 128 (356)
.........|++|+|++||+||++++|++|||||||||+++++.||+.|+++.|++|+|+..
T Consensus 53 ~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~s 114 (115)
T 4hc9_A 53 SAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS 114 (115)
T ss_dssp CCCCCTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred cccccccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCCCCccccccchhhcccccc
Confidence 34456779999999999999999999999999999999999999999999999999999753
No 4
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.70 E-value=6.9e-18 Score=120.86 Aligned_cols=43 Identities=53% Similarity=1.120 Sum_probs=40.3
Q ss_pred CcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCcc
Q psy9606 73 DLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSM 115 (356)
Q Consensus 73 ~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~sl 115 (356)
+..|.+|++++||+||+|++|.+|||||||||+++++.||++|
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCCC
T ss_pred CCcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCCCCCCC
Confidence 3689999999999999999999999999999999999999875
No 5
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.66 E-value=4e-17 Score=118.46 Aligned_cols=43 Identities=40% Similarity=0.959 Sum_probs=40.7
Q ss_pred CCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCc
Q psy9606 72 ADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVS 114 (356)
Q Consensus 72 ~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~s 114 (356)
....|.+|++++||+||++++|.+|||||||||+++++.||+.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~ 45 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLI 45 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSCCCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCCCCCC
Confidence 3578999999999999999999999999999999999999985
No 6
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.64 E-value=1.8e-17 Score=129.83 Aligned_cols=50 Identities=32% Similarity=0.687 Sum_probs=43.6
Q ss_pred CCCcccccCCCCCCcceee--CCCCCcccchhhHHHHHhCCCCCCccccCCCC
Q psy9606 71 RADLTCTNCNTKVTTIWRR--YPSGEMVCNACGLYYRLHCRPRPVSMRRDNIH 121 (356)
Q Consensus 71 ~~~~~CsnCgTt~TP~WRR--gp~G~~LCNACGL~~k~~g~~RP~slkk~~i~ 121 (356)
.....|.||+|++||+||+ ++.| +|||||||||+++++.||+.++++.++
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~~~~~~ 57 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKTRPVTAVNKYQK 57 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHHHHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCCCCcccchhhhh
Confidence 3468999999999999999 6667 999999999999999999999887543
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.45 E-value=5.6e-14 Score=118.10 Aligned_cols=44 Identities=39% Similarity=0.926 Sum_probs=39.7
Q ss_pred CCCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCc
Q psy9606 71 RADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVS 114 (356)
Q Consensus 71 ~~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~s 114 (356)
...+.|+||+|++||+|||+++|++||||||||++++++.||+.
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~ 46 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLI 46 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCS
T ss_pred CCCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccc
Confidence 35689999999999999999999999999999999999999974
No 8
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=77.12 E-value=0.49 Score=46.11 Aligned_cols=24 Identities=46% Similarity=0.801 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGDNKSLSSGDE 296 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~ 296 (356)
.|.|||.||||.+|+|-.++-.-.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (357)
T 4g1u_A 2 GHHHHHHHHHHSSGENLYFQGHMN 25 (357)
T ss_dssp ------------------------
T ss_pred CCcccccccccCCCCchHHHhHHH
Confidence 478888899999999988765543
No 9
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=73.09 E-value=1.6 Score=32.28 Aligned_cols=30 Identities=33% Similarity=0.837 Sum_probs=22.8
Q ss_pred CcccccCCCCCCcceeeCCCCCcccchhhHHH
Q psy9606 73 DLTCTNCNTKVTTIWRRYPSGEMVCNACGLYY 104 (356)
Q Consensus 73 ~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~ 104 (356)
.+.|.+|+.++ +-.....|.++|..|||-+
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSCCEECTTTCCEE
T ss_pred cccCcCCCCCc--eeEeCCCCeEEeCCCCCEE
Confidence 45799998755 4444566889999999965
No 10
>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase, GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia coli}
Probab=71.89 E-value=1.3 Score=27.18 Aligned_cols=14 Identities=71% Similarity=1.362 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGD 287 (356)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (356)
|.|||.||||.||.
T Consensus 3 hhhhhhhhhhssgh 16 (21)
T 3oka_C 3 HHHHHHHHHHSSGH 16 (26)
T ss_pred cccccccccccccc
Confidence 55666667776664
No 11
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=66.56 E-value=2.2 Score=40.61 Aligned_cols=33 Identities=36% Similarity=0.822 Sum_probs=24.0
Q ss_pred CCcccccCCCCCCcceeeCCCCCcccchhhHHH
Q psy9606 72 ADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYY 104 (356)
Q Consensus 72 ~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~ 104 (356)
....|.+|+...+-+-.....|.++|..||+-.
T Consensus 20 ~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CCCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 456899999874323334467899999999944
No 12
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=63.21 E-value=1.5 Score=38.27 Aligned_cols=17 Identities=59% Similarity=1.062 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGDNK 289 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~~ 289 (356)
.|.|||.||||.+|.-+
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (291)
T 2yjp_A 2 GHHHHHHHHHHSSGHID 18 (291)
T ss_dssp -----------------
T ss_pred CccccccccccccCccc
Confidence 36677777888777644
No 13
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=62.87 E-value=2.9 Score=36.48 Aligned_cols=37 Identities=27% Similarity=0.525 Sum_probs=26.5
Q ss_pred cccccCCCCCCcceeeCCCCCcccchhhHHHHHhCCCCCCcccc
Q psy9606 74 LTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRR 117 (356)
Q Consensus 74 ~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~~RP~slkk 117 (356)
-.|..|+..+|-+-+.+..=..-|+|||- .|++.+++
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa-------~~~V~~~k 141 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGA-------ETPIQHLL 141 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCC-------CCCCCC--
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCC-------Cccccchh
Confidence 57999999999987754222369999986 66665544
No 14
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=62.58 E-value=1.4 Score=29.95 Aligned_cols=28 Identities=29% Similarity=0.567 Sum_probs=21.3
Q ss_pred ccccCCCCCCcceeeCCCCCcccchhhH
Q psy9606 75 TCTNCNTKVTTIWRRYPSGEMVCNACGL 102 (356)
Q Consensus 75 ~CsnCgTt~TP~WRRgp~G~~LCNACGL 102 (356)
.|..|+..+|-+-+++..=..-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCC
Confidence 5999999999987754222357999985
No 15
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=61.32 E-value=1.7 Score=40.26 Aligned_cols=14 Identities=71% Similarity=1.334 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSG 286 (356)
Q Consensus 273 ~~~~~~~~~~~~~~ 286 (356)
.|.|||.||||.+|
T Consensus 2 ~~~~~~~~~~~~~~ 15 (406)
T 1ydx_A 2 GHHHHHHHHHHSSG 15 (406)
T ss_dssp --------------
T ss_pred CccccccccccccC
Confidence 36666777777665
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=61.18 E-value=2.9 Score=29.22 Aligned_cols=30 Identities=27% Similarity=0.687 Sum_probs=21.5
Q ss_pred CcccccCCCCCCcceeeCCCCCcccchhhHHH
Q psy9606 73 DLTCTNCNTKVTTIWRRYPSGEMVCNACGLYY 104 (356)
Q Consensus 73 ~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~ 104 (356)
...|-+|+.+ ++-.....|.++|..||+-+
T Consensus 5 ~~~CP~C~~~--~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCc--ceEEcCCCCeEECcccCCcc
Confidence 3679999773 44334455789999999955
No 17
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.82 E-value=6.4 Score=33.82 Aligned_cols=36 Identities=22% Similarity=0.539 Sum_probs=30.3
Q ss_pred CcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCC
Q psy9606 73 DLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR 109 (356)
Q Consensus 73 ~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~ 109 (356)
...|.+|+.. -|.|-.-..|-.+|-.|.-..|..|+
T Consensus 29 N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 29 NKYCADCEAK-GPRWASWNIGVFICIRCAGIHRNLGV 64 (141)
T ss_dssp GSSCSSSCCS-SCCSEETTTTEECCHHHHHHHHHHCT
T ss_pred CCcCCCCCCC-CCCeEEeccCeEEhhhhhHhHhcCCC
Confidence 3789999986 58999999999999999877777663
No 18
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=57.76 E-value=4.1 Score=35.14 Aligned_cols=29 Identities=31% Similarity=0.630 Sum_probs=20.3
Q ss_pred cccccCCCCCCcceeeCCCCCcccchhhH
Q psy9606 74 LTCTNCNTKVTTIWRRYPSGEMVCNACGL 102 (356)
Q Consensus 74 ~~CsnCgTt~TP~WRRgp~G~~LCNACGL 102 (356)
-.|..|+..+|-+-+++..=..-|+|||-
T Consensus 104 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa 132 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSWYIVCLACGA 132 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTTTSSCCC---
T ss_pred eECCCCCCcCcEEEEeCCeEEEEecCCCC
Confidence 68999999999987754222369999986
No 19
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=57.26 E-value=6.9 Score=33.35 Aligned_cols=37 Identities=22% Similarity=0.505 Sum_probs=31.1
Q ss_pred CCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCC
Q psy9606 72 ADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR 109 (356)
Q Consensus 72 ~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~ 109 (356)
....|.+|+... |.|-.-.-|-.+|-.|.=..|..|+
T Consensus 26 ~N~~CaDCg~~~-P~WaS~n~GvfiC~~CsgiHR~lG~ 62 (134)
T 2iqj_A 26 DNKFCADCQSKG-PRWASWNIGVFICIRCAGIHRNLGV 62 (134)
T ss_dssp GGGBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHCT
T ss_pred CCCcCCcCcCCC-CCeEEecCCEEEhHhhhHHHhcCCC
Confidence 348999999874 9999999999999999877777664
No 20
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=56.91 E-value=2.3 Score=41.05 Aligned_cols=20 Identities=50% Similarity=0.853 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGDNKSLS 292 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~ 292 (356)
.|.|||.||||.+||-....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (395)
T 3b9f_I 2 GHHHHHHHHHHSSGHIDDDD 21 (395)
T ss_dssp --------------------
T ss_pred CccccccccccCCCCcCCCc
Confidence 47788888888888865543
No 21
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=56.73 E-value=6.6 Score=33.77 Aligned_cols=36 Identities=19% Similarity=0.472 Sum_probs=30.5
Q ss_pred CcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCC
Q psy9606 73 DLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR 109 (356)
Q Consensus 73 ~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~ 109 (356)
...|.+|+... |.|-.-.-|-.+|-.|.=..|..|+
T Consensus 36 N~~CaDCga~~-P~WaS~n~GvfiC~~CsgiHR~LG~ 71 (138)
T 2owa_A 36 NRTCFDCESRN-PTWLSLSFAVFICLNCSSDHRKMGV 71 (138)
T ss_dssp GGBCTTTCCBS-CCEEETTTTEEECHHHHHHHHTTCT
T ss_pred CCcCCCCcCCC-CCeEEecCCEEEhHhhhHHHhCCCC
Confidence 37899999865 9999999999999999877776664
No 22
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=55.06 E-value=4.3 Score=34.96 Aligned_cols=29 Identities=34% Similarity=0.669 Sum_probs=22.9
Q ss_pred cccccCCCCCCcceeeCCCCCcccchhhH
Q psy9606 74 LTCTNCNTKVTTIWRRYPSGEMVCNACGL 102 (356)
Q Consensus 74 ~~CsnCgTt~TP~WRRgp~G~~LCNACGL 102 (356)
-.|..|+..+|-+-+++..=..-|+|||-
T Consensus 103 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRISLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTTEEECSTTSC
T ss_pred EECCCCCCcCcEEEEcCCeEEEEccCCCC
Confidence 57999999999998764322369999985
No 23
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=53.48 E-value=8 Score=34.91 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=30.4
Q ss_pred CCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCC
Q psy9606 72 ADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR 109 (356)
Q Consensus 72 ~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~ 109 (356)
....|..|+... |.|..-.-|..+|-.|.-..|..++
T Consensus 41 ~n~~c~dc~~~~-p~w~s~~~g~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 41 GNSQCCDCGAAD-PTWLSTNLGVLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTTBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHCT
T ss_pred CCCcCCCCCCCC-CCeEEeecCeEEcHHHHHHHHhhCC
Confidence 358999999965 9999999999999999766666553
No 24
>3pnr_B Pbicp-C; immunoglobulin fold, hydrolase-hydrolase inhibitor complex; 2.60A {Plasmodium berghei}
Probab=53.43 E-value=3.1 Score=37.46 Aligned_cols=30 Identities=50% Similarity=0.790 Sum_probs=2.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceeh
Q psy9606 273 EHSHHHSHHHHDSGDNKSLSSGDESSSISL 302 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (356)
.|.|||.||||.+|.-.---.|||.-.++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~gdE~Cd~~l 31 (187)
T 3pnr_B 2 GHHHHHHHHHHSSGHIEGRHMGDEKCGKSL 31 (187)
T ss_dssp --------------------------CEEE
T ss_pred CcccccccccccccccccccCCCCccchhh
Confidence 367788888888888777777888766554
No 25
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=52.26 E-value=3.4 Score=39.55 Aligned_cols=32 Identities=38% Similarity=0.856 Sum_probs=23.0
Q ss_pred CcccccCCCCCCcceeeCCCCCcccchhhHHH
Q psy9606 73 DLTCTNCNTKVTTIWRRYPSGEMVCNACGLYY 104 (356)
Q Consensus 73 ~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~ 104 (356)
...|-+|+...+-+-..-..|.++|..|||-.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl 52 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCc
Confidence 35899999744444444567999999999844
No 26
>4fl4_A Glycoside hydrolase family 9; structural genomics, montreal-kingston bacterial structural initiative, BSGI, dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Probab=51.45 E-value=3.8 Score=32.89 Aligned_cols=26 Identities=46% Similarity=0.799 Sum_probs=4.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGDNKSLSSGDESS 298 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (356)
.|.|||.||||-+|-....--||-..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~GDvNg 27 (88)
T 4fl4_A 2 GHHHHHHHHHHSSGHIEGRHMGDVND 27 (88)
T ss_dssp -------------------CTTCTTC
T ss_pred CcccccccccccccCCCCCccccCCC
Confidence 36677888888899888887777543
No 27
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.06 E-value=8.8 Score=33.44 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=31.0
Q ss_pred CCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCC
Q psy9606 72 ADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR 109 (356)
Q Consensus 72 ~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~ 109 (356)
....|.+|+.. -|.|-.-..|-.+|-.|.=..|..|+
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~ 64 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYGVFLCIDCSGSHRSLGV 64 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTTEECCHHHHHHHHHHCT
T ss_pred CCCcCCCCcCC-CCCcEEeccCEEEchhcchhhccCCC
Confidence 34899999975 68999999999999999877777664
No 28
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=48.96 E-value=8.3 Score=33.56 Aligned_cols=36 Identities=22% Similarity=0.510 Sum_probs=30.4
Q ss_pred CcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCC
Q psy9606 73 DLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR 109 (356)
Q Consensus 73 ~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~ 109 (356)
...|.+|+.. -|.|-.-..|-.+|-.|.-..|..|+
T Consensus 37 N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~ 72 (144)
T 2p57_A 37 NKACFDCGAK-NPSWASITYGVFLCIDCSGVHRSLGV 72 (144)
T ss_dssp GGBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHHHCT
T ss_pred CCcCCCCcCC-CCCeEEeccCEEEhhhchHHHcCCCC
Confidence 3789999986 49999999999999999877777664
No 29
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=47.82 E-value=12 Score=32.76 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCC
Q psy9606 72 ADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR 109 (356)
Q Consensus 72 ~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~ 109 (356)
....|.+|+... |.|-.-.-|-.+|-.|.-..|..|+
T Consensus 37 ~N~~CaDCga~~-P~WaS~nlGvfiC~~CSgiHR~LG~ 73 (147)
T 3dwd_A 37 ENNVCFECGAFN-PQWVSVTYGIWICLECSGRHRGLGV 73 (147)
T ss_dssp TTTBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHCT
T ss_pred CCCccCCCCCCC-CCeEEecccEeEhHhhChHHhcCCC
Confidence 347999999864 9999999999999999877777664
No 30
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=47.11 E-value=5.4 Score=36.52 Aligned_cols=33 Identities=36% Similarity=0.822 Sum_probs=23.5
Q ss_pred CCcccccCCCCCCcceeeCCCCCcccchhhHHH
Q psy9606 72 ADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYY 104 (356)
Q Consensus 72 ~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~ 104 (356)
....|-.|+...+-+-..-..|.++|..|||-.
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVL 52 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBC
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCc
Confidence 346899999855444334456889999999843
No 31
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=46.75 E-value=4.1 Score=35.51 Aligned_cols=14 Identities=71% Similarity=1.362 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGD 287 (356)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (356)
|.|||.||||.+|.
T Consensus 3 ~~~~~~~~~~~~~~ 16 (236)
T 2px7_A 3 HHHHHHHHHHSSGH 16 (236)
T ss_dssp --------------
T ss_pred ccccccccccccCC
Confidence 66777777777764
No 32
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=46.56 E-value=4.1 Score=39.66 Aligned_cols=14 Identities=71% Similarity=1.334 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSG 286 (356)
Q Consensus 273 ~~~~~~~~~~~~~~ 286 (356)
.|.|||.||||.+|
T Consensus 2 ~~~~~~~~~~~~~~ 15 (379)
T 3uau_A 2 GHHHHHHHHHHSSG 15 (379)
T ss_dssp --------------
T ss_pred CccccccccccccC
Confidence 36677777777776
No 33
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=45.52 E-value=6.2 Score=35.25 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=22.9
Q ss_pred cccccCCCCCCcceeeCCCCC--cccchhhH
Q psy9606 74 LTCTNCNTKVTTIWRRYPSGE--MVCNACGL 102 (356)
Q Consensus 74 ~~CsnCgTt~TP~WRRgp~G~--~LCNACGL 102 (356)
-.|..|+..+|-+-+....+. .-|+|||-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 579999999999987434443 58999986
No 34
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=45.21 E-value=4.5 Score=35.51 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCCCCCC-----CCCCCCCCCceeh
Q psy9606 274 HSHHHSHHHHDSGDNK-----SLSSGDESSSISL 302 (356)
Q Consensus 274 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 302 (356)
|.|||.||||.+|.-. .+..|+..-.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~M~~l~~G~~aP~F~l 36 (221)
T 2c0d_A 3 HHHHHHHHHHSSGHIEGRHMKLSLVTKKAYNFTA 36 (221)
T ss_dssp -----------------------CTTSBCCCCEE
T ss_pred ccccccccccccccccccccccCCCCCCCCCeEE
Confidence 6677777777776432 1445555444443
No 35
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=45.21 E-value=4.5 Score=39.13 Aligned_cols=15 Identities=67% Similarity=1.210 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGDN 288 (356)
Q Consensus 274 ~~~~~~~~~~~~~~~ 288 (356)
|.|||.||||.+|.-
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (332)
T 2es4_D 2 HHHHHHHHHHSSGHI 16 (332)
T ss_dssp ---------------
T ss_pred CCcccccccccCcce
Confidence 667777777777653
No 36
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=44.67 E-value=6.8 Score=29.38 Aligned_cols=29 Identities=24% Similarity=0.679 Sum_probs=21.1
Q ss_pred cCCCCCCcccccCCCCCCcceeeCCCCCcccchhhHH
Q psy9606 67 IIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLY 103 (356)
Q Consensus 67 ~~t~~~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~ 103 (356)
.........|.+||...-| +.+|-.||.|
T Consensus 24 kl~~p~l~~c~~cG~~~~p--------H~vc~~CG~Y 52 (60)
T 2zjr_Z 24 ALTAPNLTECPQCHGKKLS--------HHICPNCGYY 52 (60)
T ss_dssp CCCCCCCEECTTTCCEECT--------TBCCTTTCBS
T ss_pred cccCCCceECCCCCCEeCC--------ceEcCCCCcC
Confidence 3455566889999976444 3699999965
No 37
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=44.60 E-value=4.6 Score=39.77 Aligned_cols=22 Identities=45% Similarity=0.756 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGDNKSLSSG 294 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~ 294 (356)
.|.|||.||||.+|.-+.++.-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (580)
T 3etc_A 2 GHHHHHHHHHHSSGHIDDDDKH 23 (580)
T ss_dssp ----------------------
T ss_pred CccccccccccccCCcCchHHH
Confidence 3777888888888876665543
No 38
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=44.31 E-value=4.7 Score=36.20 Aligned_cols=16 Identities=63% Similarity=1.134 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGDN 288 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~ 288 (356)
.|.|||.||||.+|-.
T Consensus 2 ~~~~~~~~~~~~~~~~ 17 (288)
T 1jxh_A 2 GHHHHHHHHHHSSGYH 17 (288)
T ss_dssp ----------------
T ss_pred CcccccccccccCccc
Confidence 3667777778877753
No 39
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=43.00 E-value=5.1 Score=38.56 Aligned_cols=13 Identities=77% Similarity=1.457 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSG 286 (356)
Q Consensus 274 ~~~~~~~~~~~~~ 286 (356)
|.|||.||||.||
T Consensus 3 ~~~~~~~~~~~~~ 15 (332)
T 4axs_A 3 HHHHHHHHHHSSG 15 (332)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 6677777777776
No 40
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=42.53 E-value=5.2 Score=36.26 Aligned_cols=16 Identities=63% Similarity=1.117 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGDN 288 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~ 288 (356)
.|.|||.||||.+|.-
T Consensus 2 ~~~~~~~~~~~~~~~~ 17 (223)
T 3dfz_A 2 GHHHHHHHHHHSSGHI 17 (223)
T ss_dssp ----------------
T ss_pred CccccccccccccCcc
Confidence 3667777778877753
No 41
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.10 E-value=7.6 Score=34.23 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=22.6
Q ss_pred cccccCCCCCCcceeeCCCCC--cccchhhH
Q psy9606 74 LTCTNCNTKVTTIWRRYPSGE--MVCNACGL 102 (356)
Q Consensus 74 ~~CsnCgTt~TP~WRRgp~G~--~LCNACGL 102 (356)
-.|..|+..+|-+-+....+. .-|+|||-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 579999999999876333442 58999986
No 42
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=42.09 E-value=12 Score=31.99 Aligned_cols=36 Identities=19% Similarity=0.500 Sum_probs=29.5
Q ss_pred CcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCC
Q psy9606 73 DLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR 109 (356)
Q Consensus 73 ~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~ 109 (356)
...|.+|+.. -|.|-.-..|-.+|-.|.=..|..|+
T Consensus 25 N~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQR-GPTYVNMTVGSFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCSS-CCCEEETTTTEEECHHHHHHHTTSSS
T ss_pred CCcCCCCCCC-CCCceeeccCEEEchhccchhccCCC
Confidence 4789999985 69999999999999999765555443
No 43
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=41.28 E-value=8.3 Score=28.94 Aligned_cols=29 Identities=24% Similarity=0.675 Sum_probs=20.5
Q ss_pred cCCCCCCcccccCCCCCCcceeeCCCCCcccchhhHH
Q psy9606 67 IIPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLY 103 (356)
Q Consensus 67 ~~t~~~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~ 103 (356)
.........|.+||...-|- .+|-.||.|
T Consensus 24 kl~~p~l~~c~~cGe~~~~H--------~vc~~CG~Y 52 (60)
T 3v2d_5 24 ALTPPTLVPCPECKAMKPPH--------TVCPECGYY 52 (60)
T ss_dssp CCCCCCCEECTTTCCEECTT--------SCCTTTCEE
T ss_pred cccCCceeECCCCCCeecce--------EEcCCCCcC
Confidence 33445568899999855443 589999965
No 44
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=40.90 E-value=5.7 Score=37.55 Aligned_cols=15 Identities=67% Similarity=1.210 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGDN 288 (356)
Q Consensus 274 ~~~~~~~~~~~~~~~ 288 (356)
|.|||.||||.||..
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (262)
T 1d1d_A 2 HHHHHHHHHHSSGHI 16 (262)
T ss_dssp ---------------
T ss_pred CCccccccccccCCc
Confidence 556666667766543
No 45
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=40.89 E-value=5.7 Score=36.93 Aligned_cols=15 Identities=67% Similarity=1.254 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGD 287 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~ 287 (356)
.|.|||.||||.+|.
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (374)
T 2xci_A 2 GHHHHHHHHHHSSGH 16 (374)
T ss_dssp ---------------
T ss_pred CccccccccccccCc
Confidence 366777777777764
No 46
>1t3o_A Carbon storage regulator; CSRA, CSRB, CSRC, mostly beta strands, RNA binding protein, beta sheet surface; NMR {Bacillus subtilis}
Probab=40.18 E-value=8.6 Score=31.65 Aligned_cols=19 Identities=53% Similarity=0.931 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGDNKSL 291 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~ 291 (356)
.|.|||.||||.+|..+-+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (95)
T 1t3o_A 2 GHHHHHHHHHHSSGHIEGR 20 (95)
T ss_dssp ----------CCSCCCCCC
T ss_pred CccccccccccccCCcccc
Confidence 3667778888888877543
No 47
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=40.15 E-value=18 Score=32.16 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=30.1
Q ss_pred cccccCCCCCCcceeeCCCCCcccchhhHHHHHhCC
Q psy9606 74 LTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR 109 (356)
Q Consensus 74 ~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~ 109 (356)
..|.+|+.. -|.|-.-.-|-.+|-.|.-..|..|+
T Consensus 23 ~~CaDCga~-~P~WaS~nlGvflCi~CSGiHR~LG~ 57 (163)
T 3sub_A 23 NKCFDCGIS-NPDWVSVNHGIFLCINCSGVHRSLGV 57 (163)
T ss_dssp GBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHTCT
T ss_pred CccccCCCC-CCCeEEecCCeeEHHhhhHHhcCCCC
Confidence 789999986 69999999999999999776776664
No 48
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=38.15 E-value=6.7 Score=38.86 Aligned_cols=15 Identities=67% Similarity=1.254 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGD 287 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~ 287 (356)
.|.|||.||||.+|.
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (467)
T 2axq_A 2 GHHHHHHHHHHSSGH 16 (467)
T ss_dssp ---------------
T ss_pred CcccccccccccCCc
Confidence 366777777777764
No 49
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=38.07 E-value=6.7 Score=38.75 Aligned_cols=13 Identities=77% Similarity=1.457 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSG 286 (356)
Q Consensus 274 ~~~~~~~~~~~~~ 286 (356)
|.|||.||||.||
T Consensus 3 ~~~~~~~~~~~~~ 15 (389)
T 3a5i_A 3 HHHHHHHHHHSSG 15 (389)
T ss_dssp -------------
T ss_pred ccccccccccccC
Confidence 6666667777665
No 50
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=37.86 E-value=6.8 Score=33.57 Aligned_cols=13 Identities=77% Similarity=1.457 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSG 286 (356)
Q Consensus 274 ~~~~~~~~~~~~~ 286 (356)
|.|||.||||.+|
T Consensus 3 ~~~~~~~~~~~~~ 15 (156)
T 1svj_A 3 HHHHHHHHHHSSG 15 (156)
T ss_dssp -------------
T ss_pred cccccccccCCCC
Confidence 6667777777776
No 51
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=37.40 E-value=20 Score=33.87 Aligned_cols=37 Identities=19% Similarity=0.459 Sum_probs=30.1
Q ss_pred CCCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhC
Q psy9606 71 RADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHC 108 (356)
Q Consensus 71 ~~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g 108 (356)
.....|.+|+.. -|.|-.-.-|-.+|-.|.=..|..|
T Consensus 43 ~~n~~c~dc~~~-~p~w~s~~~g~~~c~~c~~~hr~lg 79 (368)
T 3jue_A 43 DGNAQCCDCREP-APEWASINLGVTLCIQCSGIHRSLG 79 (368)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHC
T ss_pred CCcCcCCCCCCC-CCCeEEecCCeEEcHhHHHHHhccC
Confidence 346899999985 6999999999999999975555554
No 52
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=37.05 E-value=7.5 Score=37.67 Aligned_cols=17 Identities=59% Similarity=1.075 Sum_probs=2.1
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGDNK 289 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~~ 289 (356)
.|.|||.||||.+|.--
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (315)
T 1uoz_A 2 GHHHHHHHHHHSSGHIE 18 (315)
T ss_dssp -------------CCCC
T ss_pred CcccccccccccCCccc
Confidence 36677777788777543
No 53
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=36.62 E-value=7.3 Score=33.51 Aligned_cols=13 Identities=77% Similarity=1.457 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSG 286 (356)
Q Consensus 274 ~~~~~~~~~~~~~ 286 (356)
|.|||.||||.+|
T Consensus 3 ~~~~~~~~~~~~~ 15 (185)
T 4b1m_A 3 HHHHHHHHHHSSG 15 (185)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 5566666777665
No 54
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=35.60 E-value=11 Score=34.43 Aligned_cols=14 Identities=71% Similarity=1.362 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGD 287 (356)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (356)
|.|||.||||.+|-
T Consensus 2 ~~~~~~~~~~~~~~ 15 (235)
T 1qwz_A 2 HHHHHHHHHHSSGH 15 (235)
T ss_dssp CCSSSSCCCCSGGG
T ss_pred CcccccccccchhH
Confidence 56666677776663
No 55
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=35.04 E-value=8.1 Score=34.80 Aligned_cols=18 Identities=44% Similarity=0.730 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q psy9606 196 SHHHSHHHHDSGDNKSLS 213 (356)
Q Consensus 196 ~~~Hs~~~h~~~~~~~~~ 213 (356)
.|||+|||||+++++.|.
T Consensus 3 ~~~~~~~~~~~~~~~~l~ 20 (286)
T 1jr2_A 3 HHHHHHHHHHSSGHIEGR 20 (286)
T ss_dssp ------------------
T ss_pred cccccccccccccchhhc
Confidence 356777888888888876
No 56
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=34.58 E-value=23 Score=34.11 Aligned_cols=32 Identities=25% Similarity=0.737 Sum_probs=26.9
Q ss_pred CcccccCCCCCCcceeeCCCCCcccchhhHHHH
Q psy9606 73 DLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYR 105 (356)
Q Consensus 73 ~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k 105 (356)
...|.+|++. -|.|-.-.-|-.||-.|.-..|
T Consensus 34 N~~C~dC~~~-~p~w~s~~~g~~~C~~Csg~hr 65 (386)
T 3lju_X 34 NARCADCGAP-DPDWASYTLGVFICLSCSGIHR 65 (386)
T ss_dssp GSBCTTTCCB-SCCEEETTTTEEECHHHHHHHH
T ss_pred CCcCccCCCC-CCCeEEecccEEEhhhhchHhh
Confidence 4689999986 7999999999999999965443
No 57
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=34.15 E-value=8.5 Score=34.02 Aligned_cols=16 Identities=63% Similarity=1.159 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGDNK 289 (356)
Q Consensus 274 ~~~~~~~~~~~~~~~~ 289 (356)
|.|||.||||-+|.-|
T Consensus 3 ~~~~~~~~~~~~~~~~ 18 (285)
T 2c07_A 3 HHHHHHHHHHSSGHIE 18 (285)
T ss_dssp ----------------
T ss_pred ccccccccccccCccc
Confidence 6667777777766543
No 58
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=33.87 E-value=8.6 Score=34.60 Aligned_cols=18 Identities=50% Similarity=0.833 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGDNKSLS 292 (356)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~ 292 (356)
|.|||.|||| +..++.|.
T Consensus 3 ~~~~~~~~~~-~~~~~~l~ 20 (286)
T 1jr2_A 3 HHHHHHHHHH-SSGHIEGR 20 (286)
T ss_dssp -------------------
T ss_pred cccccccccc-cccchhhc
Confidence 4444444444 44555554
No 59
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=33.84 E-value=8.7 Score=38.01 Aligned_cols=14 Identities=71% Similarity=1.362 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGD 287 (356)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (356)
|.|||.||||.+|.
T Consensus 3 ~~~~~~~~~~~~~~ 16 (394)
T 2qrj_A 3 HHHHHHHHHHSSGH 16 (394)
T ss_dssp --------------
T ss_pred cccccccccccCCC
Confidence 66777777777764
No 60
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=33.57 E-value=8.8 Score=33.26 Aligned_cols=14 Identities=71% Similarity=1.362 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGD 287 (356)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (356)
|.|||.||||.+|.
T Consensus 3 ~~~~~~~~~~~~~~ 16 (132)
T 1yx4_A 3 HHHHHHHHHHSSGH 16 (132)
T ss_dssp --------------
T ss_pred ccccccccccccCC
Confidence 55666667776654
No 61
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=33.22 E-value=9 Score=36.88 Aligned_cols=14 Identities=71% Similarity=1.274 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q psy9606 276 HHHSHHHHDSGDNK 289 (356)
Q Consensus 276 ~~~~~~~~~~~~~~ 289 (356)
|||.||||.+|.|-
T Consensus 3 ~~~~~~~~~~~~~~ 16 (380)
T 3c3r_A 3 HHHHHHHHHSGQNL 16 (380)
T ss_dssp --------------
T ss_pred ccccccccccccch
Confidence 55556677788774
No 62
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=33.09 E-value=9.1 Score=39.85 Aligned_cols=13 Identities=77% Similarity=1.457 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSG 286 (356)
Q Consensus 274 ~~~~~~~~~~~~~ 286 (356)
|.|||.||||.+|
T Consensus 3 ~~~~~~~~~~~~~ 15 (560)
T 3odm_A 3 HHHHHHHHHHSSG 15 (560)
T ss_dssp -------------
T ss_pred ccccccccccccC
Confidence 6667777777666
No 63
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=32.00 E-value=9.7 Score=37.17 Aligned_cols=21 Identities=67% Similarity=1.102 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC----CCCCCCCC
Q psy9606 274 HSHHHSHHHHDSG----DNKSLSSG 294 (356)
Q Consensus 274 ~~~~~~~~~~~~~----~~~~~~~~ 294 (356)
|.|||.||||.|| ||+--++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (433)
T 4e4j_A 3 HHHHHHHHHHSSGHIDDDDKHMSSI 27 (433)
T ss_dssp -------------------------
T ss_pred cccccccccccccccCcchhhhhhh
Confidence 6667777777766 44444443
No 64
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=31.92 E-value=9.7 Score=32.00 Aligned_cols=22 Identities=55% Similarity=1.058 Sum_probs=2.5
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGD--NKSLSSGD 295 (356)
Q Consensus 274 ~~~~~~~~~~~~~~--~~~~~~~~ 295 (356)
|.|||.||||.+|. +.+..+|-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~m~sGi 26 (139)
T 2l72_A 3 HHHHHHHHHHSSGHIEGRHMASGM 26 (139)
T ss_dssp -------------------CCTTC
T ss_pred cccccccccccccccccccccCCC
Confidence 66777777787775 34445553
No 65
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=31.31 E-value=10 Score=36.84 Aligned_cols=18 Identities=56% Similarity=1.023 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGDNKS 290 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~ 290 (356)
.|.|||.||||.+|.-+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (327)
T 1k8w_A 2 GHHHHHHHHHHSSGHIEG 19 (327)
T ss_dssp ------------------
T ss_pred Cccccccccccccccccc
Confidence 366777778887776543
No 66
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=31.29 E-value=10 Score=36.21 Aligned_cols=13 Identities=77% Similarity=1.457 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSG 286 (356)
Q Consensus 274 ~~~~~~~~~~~~~ 286 (356)
|.|||.||||.||
T Consensus 3 ~~~~~~~~~~~~~ 15 (268)
T 3k9f_C 3 HHHHHHHHHHSSG 15 (268)
T ss_dssp -------------
T ss_pred ccccccccccccC
Confidence 5666666776665
No 67
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=31.27 E-value=10 Score=32.46 Aligned_cols=13 Identities=77% Similarity=1.457 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSG 286 (356)
Q Consensus 274 ~~~~~~~~~~~~~ 286 (356)
|.|||.||||.+|
T Consensus 3 ~~~~~~~~~~~~~ 15 (145)
T 2d2a_A 3 HHHHHHHHHHSSG 15 (145)
T ss_dssp -------------
T ss_pred ccccccccccccC
Confidence 5566666777665
No 68
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=31.26 E-value=10 Score=34.15 Aligned_cols=13 Identities=77% Similarity=1.457 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSG 286 (356)
Q Consensus 274 ~~~~~~~~~~~~~ 286 (356)
|.|||.||||.|+
T Consensus 3 ~~~~~~~~~~~~~ 15 (174)
T 2oar_A 3 HHHHHHHHHHSSG 15 (174)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 5566666666554
No 69
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=30.84 E-value=10 Score=38.85 Aligned_cols=14 Identities=71% Similarity=1.362 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGD 287 (356)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (356)
|.|||.||||.||.
T Consensus 3 ~~~~~~~~~~~~~~ 16 (591)
T 3b0g_A 3 HHHHHHHHHHSSGH 16 (591)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 66777777777664
No 70
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=30.45 E-value=11 Score=34.62 Aligned_cols=12 Identities=75% Similarity=1.395 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDS 285 (356)
Q Consensus 274 ~~~~~~~~~~~~ 285 (356)
|.|||.||||.+
T Consensus 3 ~~~~~~~~~~~~ 14 (299)
T 3cio_A 3 HHHHHHHHHHSS 14 (299)
T ss_dssp ------------
T ss_pred cccccccccccH
Confidence 555555555543
No 71
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=30.45 E-value=11 Score=36.94 Aligned_cols=15 Identities=67% Similarity=1.254 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGD 287 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~ 287 (356)
.|.|||.||||.+|.
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (357)
T 2apo_A 2 GHHHHHHHHHHSSGH 16 (357)
T ss_dssp ---------------
T ss_pred CccccccccccccCc
Confidence 366777777777764
No 72
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=30.34 E-value=11 Score=37.05 Aligned_cols=14 Identities=71% Similarity=1.362 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGD 287 (356)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (356)
|.|||.||||.+|.
T Consensus 2 ~~~~~~~~~~~~~~ 15 (358)
T 3tut_A 2 HHHHHHHHHHSSGH 15 (358)
T ss_dssp --------------
T ss_pred CcccccccccccCc
Confidence 56777777777764
No 73
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=30.10 E-value=7 Score=28.08 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=23.5
Q ss_pred CcccccCCCCCCc----ceeeCCCCC---cccchhhHHHH
Q psy9606 73 DLTCTNCNTKVTT----IWRRYPSGE---MVCNACGLYYR 105 (356)
Q Consensus 73 ~~~CsnCgTt~TP----~WRRgp~G~---~LCNACGL~~k 105 (356)
...|..|+-.+.- +||...++. +.|..||-.|+
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 3679999985443 577776775 58999987553
No 74
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=30.03 E-value=32 Score=30.50 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=30.7
Q ss_pred CCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCC
Q psy9606 72 ADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR 109 (356)
Q Consensus 72 ~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~ 109 (356)
....|..|+... |.|-.-.-|-.+|-.|.-..|..|+
T Consensus 16 ~n~~c~dc~~~~-p~w~s~~~g~~~c~~c~~~hr~lg~ 52 (278)
T 1dcq_A 16 GNDVCCDCGAPD-PTWLSTNLGILTCIECSGIHRELGV 52 (278)
T ss_dssp TTTBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHCT
T ss_pred CCCcCCCCCCCC-CCeEEecCCeEEcHHHHHHHhhcCC
Confidence 347899999975 6999999999999999777776664
No 75
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=29.89 E-value=24 Score=32.56 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=30.3
Q ss_pred CCcccccCCCCCCcceeeCCCCCcccchhhHHHHHhCC
Q psy9606 72 ADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCR 109 (356)
Q Consensus 72 ~~~~CsnCgTt~TP~WRRgp~G~~LCNACGL~~k~~g~ 109 (356)
....|.+|+.. -|.|-.-.-|-.+|-.|.-..|..|+
T Consensus 36 ~n~~c~dc~~~-~~~~~~~~~~~~~c~~c~~~hr~~~~ 72 (329)
T 3o47_A 36 ENNVCFECGAF-NPQWVSVTYGIWICLECSGRHRGLGV 72 (329)
T ss_dssp TTTBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHHHCT
T ss_pred CCCcCCCCCCC-CCCeEEecCCEEEChhhhhhhcccCC
Confidence 34789999985 57999999999999999877766654
No 76
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=28.75 E-value=25 Score=27.15 Aligned_cols=29 Identities=21% Similarity=0.560 Sum_probs=21.4
Q ss_pred cccccCCCCCCccee--eCCCCCcccchhhHH
Q psy9606 74 LTCTNCNTKVTTIWR--RYPSGEMVCNACGLY 103 (356)
Q Consensus 74 ~~CsnCgTt~TP~WR--Rgp~G~~LCNACGL~ 103 (356)
..|+-||-.+...-+ .|+ |.+.||.|.-.
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-gvyICdeCI~~ 49 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-SVYICDECVDL 49 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-SCEEEHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-CCChhHHHHHH
Confidence 689999988765432 455 66899999743
No 77
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=27.30 E-value=15 Score=35.33 Aligned_cols=12 Identities=75% Similarity=1.450 Sum_probs=2.9
Q ss_pred CCCCCCCCCCCC
Q psy9606 272 AEHSHHHSHHHH 283 (356)
Q Consensus 272 ~~~~~~~~~~~~ 283 (356)
.||.|||.||||
T Consensus 329 ~~~~~~~~~~~~ 340 (340)
T 2oxn_A 329 SEHHHHHHHHHH 340 (340)
T ss_dssp CSTTC-------
T ss_pred HhhcccccccCC
Confidence 366666655554
No 78
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=27.07 E-value=13 Score=36.05 Aligned_cols=13 Identities=77% Similarity=1.457 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSG 286 (356)
Q Consensus 274 ~~~~~~~~~~~~~ 286 (356)
|.|||.||||.+|
T Consensus 5 ~~~~~~~~~~~~~ 17 (371)
T 3tla_A 5 HHHHHHHHHHSSG 17 (371)
T ss_dssp -------------
T ss_pred ccccccccccccC
Confidence 3444445555554
No 79
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=26.74 E-value=14 Score=34.84 Aligned_cols=16 Identities=63% Similarity=1.161 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q psy9606 272 AEHSHHHSHHHHDSGD 287 (356)
Q Consensus 272 ~~~~~~~~~~~~~~~~ 287 (356)
..|.|||.||||.+|.
T Consensus 11 ~~~~~~~~~~~~~~~~ 26 (254)
T 2bu3_A 11 MGHHHHHHHHHHSSGH 26 (254)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 4577777788887774
No 80
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=26.61 E-value=14 Score=33.71 Aligned_cols=9 Identities=78% Similarity=1.420 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q psy9606 277 HHSHHHHDS 285 (356)
Q Consensus 277 ~~~~~~~~~ 285 (356)
||.|||||+
T Consensus 4 ~~~~~~~~~ 12 (398)
T 3oti_A 4 HHHHHHHHS 12 (398)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 333444443
No 81
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=26.49 E-value=35 Score=24.85 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=21.7
Q ss_pred CcccccCCCCCCccee--eCCCCCcccchhhHH
Q psy9606 73 DLTCTNCNTKVTTIWR--RYPSGEMVCNACGLY 103 (356)
Q Consensus 73 ~~~CsnCgTt~TP~WR--Rgp~G~~LCNACGL~ 103 (356)
...|+-||..+...-+ .|+ |...||.|.-.
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGp-gv~IC~eCi~~ 42 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGP-SVYICDECVDL 42 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECS-SCEEEHHHHHH
T ss_pred CcEecCCCCCHHHhcccCCCC-CCEehHHHHHH
Confidence 3689999988766432 455 66899999743
No 82
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=23.64 E-value=17 Score=36.00 Aligned_cols=16 Identities=56% Similarity=1.176 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q psy9606 197 HHHSHHHHDSGDNKSL 212 (356)
Q Consensus 197 ~~Hs~~~h~~~~~~~~ 212 (356)
|||+|||||.|||-.+
T Consensus 2 hhhhhhhhhhgenltf 17 (564)
T 4faj_A 2 HHHHHHHHHHGENLTF 17 (564)
T ss_dssp ----------------
T ss_pred Cccccccccccccccc
Confidence 4667777777887544
No 83
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=23.64 E-value=17 Score=40.03 Aligned_cols=15 Identities=67% Similarity=1.254 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHDSGD 287 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~ 287 (356)
.|.|||.||||.+|.
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (993)
T 2ygr_A 2 GHHHHHHHHHHSSGH 16 (993)
T ss_dssp ---------------
T ss_pred CccccccccccccCc
Confidence 366777777777764
No 84
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=23.62 E-value=17 Score=33.83 Aligned_cols=12 Identities=67% Similarity=1.428 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q psy9606 273 EHSHHHSHHHHD 284 (356)
Q Consensus 273 ~~~~~~~~~~~~ 284 (356)
.|.|||.||||+
T Consensus 9 ~~~~~~~~~~~~ 20 (256)
T 3llq_A 9 KHHHHHHHHHHE 20 (256)
T ss_dssp ------------
T ss_pred ccccccccccch
Confidence 344555455543
No 85
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=23.58 E-value=17 Score=31.26 Aligned_cols=21 Identities=48% Similarity=0.778 Sum_probs=0.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGDNKSLSSG 294 (356)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~ 294 (356)
|.|||.||||.+|.-.-.-..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (142)
T 2pi2_E 3 HHHHHHHHHHSSGHIEGRHMV 23 (142)
T ss_dssp --------------------C
T ss_pred cccccccccccCCceeccccc
Confidence 667777778877765443333
No 86
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=22.63 E-value=18 Score=28.52 Aligned_cols=15 Identities=67% Similarity=1.210 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGDN 288 (356)
Q Consensus 274 ~~~~~~~~~~~~~~~ 288 (356)
|.|||.||||.+|.-
T Consensus 3 ~~~~~~~~~~~~~~~ 17 (87)
T 1tyg_B 3 HHHHHHHHHHSSGHI 17 (87)
T ss_dssp ---------------
T ss_pred cccccccccccCCCC
Confidence 556666777777653
No 87
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.40 E-value=29 Score=25.27 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=21.3
Q ss_pred cccccCCCCCCc-ceeeCCCCCcccchhhHHHHHhCCCCC
Q psy9606 74 LTCTNCNTKVTT-IWRRYPSGEMVCNACGLYYRLHCRPRP 112 (356)
Q Consensus 74 ~~CsnCgTt~TP-~WRRgp~G~~LCNACGL~~k~~g~~RP 112 (356)
..|..|+..-.. .+--..+|+++|..|....+...+.||
T Consensus 32 F~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~~~r~ 71 (73)
T 1wig_A 32 ALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDSGPS 71 (73)
T ss_dssp SCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSSCCSC
T ss_pred CEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcccccCC
Confidence 467777665431 111123567899999764444444443
No 88
>3ako_A Venus; fluorescent protein, GFP; HET: CR2 PE8; 2.10A {Plant transformation vector psiteii-4corganism_taxid}
Probab=22.33 E-value=18 Score=32.51 Aligned_cols=24 Identities=54% Similarity=0.995 Sum_probs=3.4
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCCCC
Q psy9606 273 EHSHHHSHHHHDSGDNKS--LSSGDE 296 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~--~~~~~~ 296 (356)
.|.|||.||||.||..+- ++.|.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~ 27 (173)
T 3ako_A 2 GHHHHHHHHHHSSGHIERHMVSKGEE 27 (173)
T ss_dssp -------------------CCSSGGG
T ss_pred Ccccccccccccccccchhhhhhhhh
Confidence 366777788888887663 556654
No 89
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=22.16 E-value=19 Score=33.56 Aligned_cols=14 Identities=71% Similarity=1.362 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGD 287 (356)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (356)
|.|||.||||.+|.
T Consensus 3 ~~~~~~~~~~~~~~ 16 (301)
T 2j6v_A 3 HHHHHHHHHHSSGH 16 (301)
T ss_dssp --------------
T ss_pred cccccccccccCCC
Confidence 56677777777764
No 90
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=22.01 E-value=19 Score=35.30 Aligned_cols=13 Identities=77% Similarity=1.457 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSG 286 (356)
Q Consensus 274 ~~~~~~~~~~~~~ 286 (356)
|.|||.||||.+|
T Consensus 3 ~~~~~~~~~~~~~ 15 (365)
T 4amu_A 3 HHHHHHHHHHSSG 15 (365)
T ss_dssp -------------
T ss_pred ccccccccccccC
Confidence 5566666666665
No 91
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=21.78 E-value=19 Score=34.93 Aligned_cols=20 Identities=50% Similarity=0.863 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q psy9606 197 HHHSHHHHDSGDNKSLSSGD 216 (356)
Q Consensus 197 ~~Hs~~~h~~~~~~~~~~~~ 216 (356)
|||+||||.+|||--++-.-
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (357)
T 4g1u_A 5 HHHHHHHHSSGENLYFQGHM 24 (357)
T ss_dssp --------------------
T ss_pred ccccccccCCCCchHHHhHH
Confidence 44455555557776665444
No 92
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=21.72 E-value=19 Score=29.60 Aligned_cols=16 Identities=69% Similarity=1.078 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGDNK 289 (356)
Q Consensus 274 ~~~~~~~~~~~~~~~~ 289 (356)
-+|||.||||.+|-|.
T Consensus 3 ~~~~~~~~~~~~~~~~ 18 (96)
T 1sg7_A 3 SSHHHHHHHHSSGFNP 18 (96)
T ss_dssp ----------------
T ss_pred cccccccccccCCCCC
Confidence 3678888888888764
No 93
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=21.71 E-value=19 Score=32.91 Aligned_cols=15 Identities=67% Similarity=1.210 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGDN 288 (356)
Q Consensus 274 ~~~~~~~~~~~~~~~ 288 (356)
|.|||.||||.+|.-
T Consensus 3 ~~~~~~~~~~~~~~~ 17 (203)
T 1nwa_A 3 HHHHHHHHHHSSGHI 17 (203)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 667777777877753
No 94
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=21.24 E-value=33 Score=27.44 Aligned_cols=11 Identities=73% Similarity=1.440 Sum_probs=6.4
Q ss_pred CCCCCCCCCCC
Q psy9606 275 SHHHSHHHHDS 285 (356)
Q Consensus 275 ~~~~~~~~~~~ 285 (356)
+|||.||||..
T Consensus 4 ~~~~~~~~~~~ 14 (113)
T 1tvm_A 4 SHHHHHHHHEN 14 (113)
T ss_dssp SCCCSSCCCCC
T ss_pred ccccchhhhhh
Confidence 56666666653
No 95
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=20.95 E-value=31 Score=28.81 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=23.9
Q ss_pred CcccccCCCCCCcceeeCCCCC-cccchhhHHH
Q psy9606 73 DLTCTNCNTKVTTIWRRYPSGE-MVCNACGLYY 104 (356)
Q Consensus 73 ~~~CsnCgTt~TP~WRRgp~G~-~LCNACGL~~ 104 (356)
.+.|..||+..+.....|..+. ..|-.||.+.
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTIH 35 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCCcc
Confidence 4789999999987655555554 5899999544
No 96
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=20.56 E-value=21 Score=30.89 Aligned_cols=16 Identities=63% Similarity=1.144 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGDNK 289 (356)
Q Consensus 274 ~~~~~~~~~~~~~~~~ 289 (356)
|.|||.||||-+|--.
T Consensus 3 ~~~~~~~~~~~~~~~~ 18 (283)
T 2yln_A 3 HHHHHHHHHHSSGHID 18 (283)
T ss_dssp ----------------
T ss_pred ccccccccccccccHH
Confidence 6666667777766544
No 97
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=20.50 E-value=20 Score=37.49 Aligned_cols=14 Identities=71% Similarity=1.168 Sum_probs=2.0
Q ss_pred CCCCCCCCCCCCCC
Q psy9606 274 HSHHHSHHHHDSGD 287 (356)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (356)
.+|||.||||.+|-
T Consensus 3 ~~~~~~~~~~~~~~ 16 (651)
T 3ces_A 3 SSHHHHHHHHSSGL 16 (651)
T ss_dssp -----------CEE
T ss_pred cccccccccccCCC
Confidence 46888888888874
Done!