RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9606
(356 letters)
>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds
specifically to DNA consensus sequence [AT]GATA[AG]
promoter elements; a subset of family members may also
bind protein; zinc-finger consensus topology is
C-X(2)-C-X(17)-C-X(2)-C.
Length = 54
Score = 66.2 bits (162), Expect = 2e-14
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 75 TCTNCNTKVTTIWRRYPS-GEMVCNACGLYYRLHCRPRPVSMRR-DNIHPRKRR 126
C+NC T T +WRR PS G +CNACGLY++ H RP+S R+ D I R R+
Sbjct: 1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRNRK 54
>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence
[AT]GATA[AG].
Length = 52
Score = 57.4 bits (139), Expect = 4e-11
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 71 RADLTCTNCNTKVTTIWRRYPSGE-MVCNACGLYYRLHCRP-RPVSMRRD 118
+ +C+NC T T +WRR PSG +CNACGLYY+ H RP+S+++D
Sbjct: 1 GSGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKD 50
>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger. This domain uses four cysteine
residues to coordinate a zinc ion. This domain binds to
DNA. Two GATA zinc fingers are found in the GATA
transcription factors. However there are several
proteins which only contains a single copy of the
domain.
Length = 36
Score = 55.4 bits (134), Expect = 1e-10
Identities = 20/33 (60%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 76 CTNCNTKVTTIWRRYPSGE-MVCNACGLYYRLH 107
C+NC T T +WRR P G +CNACGLYYR H
Sbjct: 1 CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKH 33
>gnl|CDD|203895 pfam08271, TF_Zn_Ribbon, TFIIB zinc-binding. The transcription
factor TFIIB contains a zinc-binding motif near the
N-terminus. This domain is involved in the interaction
with RNA pol II and TFIIF and plays a crucial role in
selecting the transcription initiation site. The domain
adopts a zinc ribbon like structure.
Length = 40
Score = 32.3 bits (74), Expect = 0.026
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 74 LTCTNCNTKVTTIWRRYPSGEMVCNACGL 102
C NC + T I Y GE VC CGL
Sbjct: 1 YKCPNCGS--TEIVFDYERGEYVCTECGL 27
>gnl|CDD|227928 COG5641, GAT1, GATA Zn-finger-containing transcription factor
[Transcription].
Length = 498
Score = 36.0 bits (83), Expect = 0.030
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 75 TCTNCNTKVTTIWRRYPS-----GEMVCNACGLYYRLHCRPR-PVSMRRDNIHPRKRR 126
C+NC T T +WRR S G +CNACGLY +LH PR P+S++ D+I R R
Sbjct: 160 VCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRAPISLKSDSIKSRSSR 217
>gnl|CDD|182628 PRK10663, PRK10663, cytochrome o ubiquinol oxidase subunit III;
Provisional.
Length = 204
Score = 34.0 bits (78), Expect = 0.068
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 192 NVEHSHHHSHHHHDSGDNK 210
+H H H HHD+G K
Sbjct: 7 THATAHAHEHGHHDAGATK 25
Score = 33.6 bits (77), Expect = 0.085
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 273 EHSHHHSHHHHDSGDNK 289
+H H H HHD+G K
Sbjct: 9 ATAHAHEHGHHDAGATK 25
>gnl|CDD|217089 pfam02535, Zip, ZIP Zinc transporter. The ZIP family consists of
zinc transport proteins and many putative metal
transporters. The main contribution to this family is
from the Arabidopsis thaliana ZIP protein family these
proteins are responsible for zinc uptake in the plant.
Also found within this family are C. elegans proteins of
unknown function which are annotated as being similar to
human growth arrest inducible gene product, although
this protein in not found within this family.
Length = 314
Score = 34.2 bits (79), Expect = 0.079
Identities = 17/121 (14%), Positives = 30/121 (24%), Gaps = 10/121 (8%)
Query: 195 HSHHHSHHHHDSGDNKSLSSGDESSSI----SLHSFISASLHHAPFNVGAPGGNSPPSHY 250
+ S D G + + ++ + G G+ +
Sbjct: 62 EALESSPCLGDHGPWHPFAGLIVLLGFFLVLLVEKLLTYYKGRGH-SHGHDHGHDGEHSH 120
Query: 251 ALNLSPLCEDNLPLNLAAGPPAEHSHHHSHHHHDSGDNKSLSSGDESS-----SISLHSF 305
+ + H HHH H D +S + + I LHSF
Sbjct: 121 TVPDEESGAVESNVVHHEHGEGPHHHHHEGHEKGESDKESGLRVRDIAWLLELGIILHSF 180
Query: 306 I 306
Sbjct: 181 F 181
Score = 31.6 bits (72), Expect = 0.53
Identities = 11/57 (19%), Positives = 12/57 (21%), Gaps = 8/57 (14%)
Query: 179 TRANDARRTPNVGNVEHSHHHSHHHHDSGDNKSLSSGDESS--------SISLHSFI 227
+ HH HH SG I LHSF
Sbjct: 125 EESGAVESNVVHHEHGEGPHHHHHEGHEKGESDKESGLRVRDIAWLLELGIILHSFF 181
>gnl|CDD|197398 cd10162, ClassIIa_HDAC4_Gln-rich-N, Glutamine-rich N-terminal
helical domain of HDAC4, a Class IIa histone
deacetylase. This family consists of the
glutamine-rich domain of histone deacetylase 4 (HDAC4).
It belongs to a superfamily that consists of the
glutamine-rich N-terminal helical extension to certain
Class IIa histone deacetylases (HDACs), including
HDAC4, HDAC5 and HDCA9; it is missing from HDAC7. This
domain confers responsiveness to calcium signals and
mediates interactions with transcription factors and
cofactors, and it is able to repress transcription
independently of the HDAC C-terminal, zinc-dependent
catalytic domain. It has many intra- and inter-helical
interactions which are possibly involved in reversible
assembly and disassembly of proteins. HDACs regulate
diverse cellular processes through enzymatic
deacetylation of histone as well as non-histone
proteins, in particular deacetylating
N(6)-acetyl-lysine residues.
Length = 90
Score = 31.7 bits (71), Expect = 0.14
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 14 QSYRNSLNRQEDNQ-HSSSNQLSETQLQQHHQAVLEDLRRDDRHRQDRQSNEQQ 66
Q L+RQ + Q H Q E +H Q +LE R+ +RHRQ+++ +QQ
Sbjct: 32 QRQHEQLSRQHEAQLHEHIKQQQELLAMKHQQELLEHQRKLERHRQEQEMEKQQ 85
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional.
Length = 279
Score = 32.5 bits (74), Expect = 0.25
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 194 EHSHHHSHHHHDSGDNKS 211
EH H H HHHH +
Sbjct: 134 EHHHDHGHHHHHEHGATA 151
Score = 32.5 bits (74), Expect = 0.25
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 273 EHSHHHSHHHHDSGDNKS 290
EH H H HHHH +
Sbjct: 134 EHHHDHGHHHHHEHGATA 151
Score = 28.2 bits (63), Expect = 6.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 194 EHSHHHSHHHH 204
+H HHH H HH
Sbjct: 132 DHEHHHDHGHH 142
Score = 28.2 bits (63), Expect = 6.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 273 EHSHHHSHHHH 283
+H HHH H HH
Sbjct: 132 DHEHHHDHGHH 142
>gnl|CDD|217936 pfam04161, Arv1, Arv1-like family. Arv1 is a transmembrane protein
with potential zinc-binding motifs. ARV1 is a novel
mediator of eukaryotic sterol homeostasis.
Length = 194
Score = 31.9 bits (73), Expect = 0.31
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 74 LTCTNCNTKVTTIWRRYPSGE---MVCNACG 101
+ C C V +++++Y SG C C
Sbjct: 1 MICIECGRPVKSLYKKYSSGNIKLTDCPNCN 31
>gnl|CDD|234622 PRK00085, recO, DNA repair protein RecO; Reviewed.
Length = 247
Score = 31.8 bits (73), Expect = 0.37
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 73 DLT-CTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHP 122
DL C C + G VC+ CG Y + P P+ + R +
Sbjct: 148 DLDHCAVCGAPGDHRYFSPKEGGAVCSECGDPYAIKLLPLPLFLLRLLLGG 198
>gnl|CDD|223597 COG0523, COG0523, Putative GTPases (G3E family) [General function
prediction only].
Length = 323
Score = 31.9 bits (73), Expect = 0.45
Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 178 FTRANDARRTPNVGNVEHSHHHSHHHHDSGDNKSLS--SGDESSSISLHSFISASLHHAP 235
D R + S H H HD G S S + L +F+ L
Sbjct: 194 DEGLFDLDRDVGRTSPLFSDHQHDHEHDEGGISSFSVRADRPFDPERLEAFLDLLLSARG 253
Query: 236 FNV 238
V
Sbjct: 254 EKV 256
Score = 28.4 bits (64), Expect = 6.3
Identities = 9/58 (15%), Positives = 14/58 (24%)
Query: 260 DNLPLNLAAGPPAEHSHHHSHHHHDSGDNKSLSSGDESSSISLHSFISASLHHAPFNV 317
D P H H + S+ + L +F+ L V
Sbjct: 199 DLDRDVGRTSPLFSDHQHDHEHDEGGISSFSVRADRPFDPERLEAFLDLLLSARGEKV 256
>gnl|CDD|224323 COG1405, SUA7, Transcription initiation factor TFIIIB, Brf1
subunit/Transcription initiation factor TFIIB
[Transcription].
Length = 285
Score = 30.7 bits (70), Expect = 0.92
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 75 TCTNCNTKVTTIWRRYPSGEMVCNACGL 102
+C C T I Y GE+VC CGL
Sbjct: 3 SCPEC--GSTNIITDYERGEIVCADCGL 28
>gnl|CDD|197397 cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich N-terminal
helical domain of various Class IIa histone
deacetylases (HDAC4, HDAC5 and HDCA9). This
superfamily consists of a glutamine-rich N-terminal
helical extension to certain Class IIa histone
deacetylases (HDACs), including HDAC4, HDAC5 and HDAC9;
it is missing in HDAC7. It is referred to as the
glutamine-rich domain, and confers responsiveness to
calcium signals and mediates interactions with
transcription factors and cofactors. This domain is
able to repress transcription independently of the
HDAC's C-terminal, zinc-dependent catalytic domain. It
has many intra- and inter-helical interactions which
are possibly involved in reversible assembly and
disassembly of proteins. HDACs regulate diverse
cellular processes through enzymatic deacetylation of
histone as well as non-histone proteins, in particular
deacetylating N(6)-acetyl-lysine residues.
Length = 90
Score = 29.3 bits (65), Expect = 0.92
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 14 QSYRNSLNRQEDNQ-HSSSNQLSETQLQQHHQAVLEDLRRDDRHRQ----DRQSNEQQI 67
Q +L RQ + Q Q E + Q +LE R+ ++ RQ ++Q EQQ+
Sbjct: 32 QKQHENLTRQHEAQLQEHIKQQQEMLAIKQQQELLEKQRKLEQQRQEQELEKQRREQQL 90
>gnl|CDD|204848 pfam12203, HDAC4_Gln, Glutamine rich N terminal domain of histone
deacetylase 4. This domain is found in eukaryotes, and
is approximately 90 amino acids in length. The family
is found in association with pfam00850. The domain
forms an alpha helix which complexes to form a
tetramer. The glutamine rich domains have many intra-
and inter-helical interactions which are thought to be
involved in reversible assembly and disassembly of
proteins. The domain is part of histone deacetylase 4
(HDAC4) which removes acetyl groups from histones. This
restores their positive charge to allow stronger DNA
binding thus restricting transcriptional activity.
Length = 92
Score = 29.2 bits (65), Expect = 1.0
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 14 QSYRNSLNRQEDNQ-HSSSNQLSETQLQQHHQAVLEDLRRDDRHRQ----DRQSNEQQI 67
Q +L RQ + Q Q E + Q +LE R+ ++ RQ ++ EQQ+
Sbjct: 34 QKQHENLTRQHEAQLQEHLKQQQELLAMKRQQELLEKERKLEQQRQEQELEKHRREQQL 92
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor Elf1;
Provisional.
Length = 99
Score = 29.3 bits (66), Expect = 1.1
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 68 IPKRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRP 110
+PK C C ++ + + C CGLY
Sbjct: 18 LPKI--FECPRCGKVSISVKIKKNIAIITCGNCGLYTEFEVPS 58
>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA. These proteins have been
shown to function as initial receptors in the ABC uptake
of Zn2+. They belong to the TroA superfamily of
periplasmic metal binding proteins that share a distinct
fold and ligand binding mechanism. They are comprised
of two globular subdomains connected by a single helix
and bind their specific ligands in the cleft between
these domains. A typical TroA protein is comprised of
two globular subdomains connected by a single helix and
can bind the metal ion in the cleft between these
domains. In addition, these proteins sometimes have a
low complexity region containing a metal-binding
histidine-rich motif (repetitive HDH sequence).
Length = 286
Score = 30.0 bits (68), Expect = 1.5
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 251 ALNLSPLCEDNLPLNLAAGPPAEHSHHHSHHHHDSGDNKSL 291
L L+ L + + A+ EH H H+H HD + L
Sbjct: 79 VLTLAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEEGGL 119
>gnl|CDD|220264 pfam09490, CbtA, Probable cobalt transporter subunit (CbtA). This
entry represents a family of proteins which have been
proposed to act as cobalt transporters acting in concert
with vitamin B12 biosynthesis systems. Evidence for this
assignment includes 1) prediction of five transmembrane
segments, 2) positional gene linkage with known B12
biosynthesis genes, 3) upstream proximity of B12
transcriptional regulatory sites, 4) the absence of
other known cobalt import systems and 5) the obligate
co-localisation with a small protein (CbtB) having a
single additional transmembrane segment and a C-terminal
histidine-rich motif likely to be a metal-binding site.
Length = 228
Score = 30.0 bits (68), Expect = 1.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 267 AAGPPAEHSHHHSHHHHDSG 286
+AG H+ + H HD+
Sbjct: 40 SAGEVHFHAEGVAAHPHDAA 59
>gnl|CDD|197326 cd09092, INPP5A, Type I inositol polyphosphate 5-phosphatase I.
Type I inositol polyphosphate 5-phosphatase I (INPP5A)
hydrolyzes the 5-phosphate from inositol
1,3,4,5-tetrakisphosphate [I(1,3,4,5)P4] and inositol
1,4,5-trisphosphate [I(1,4,5)P3]. It belongs to a family
of Mg2+-dependent inositol polyphosphate 5-phosphatases,
which hydrolyze the 5-phosphate from the inositol ring
of various 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), and to the large
EEP (exonuclease/endonuclease/phosphatase) superfamily
that contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. As the substrates of INPP5A mobilize
intracellular calcium ions, INPP5A is a calcium
signal-terminating enzyme. In platelets, phosphorylated
pleckstrin binds and activates INPP5A in a 1:1 complex,
and accelerates the degradation of the calcium
ion-mobilizing I(1,4,5)P3.
Length = 383
Score = 30.1 bits (68), Expect = 1.6
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 8 KKGSSTQSYRNSLNRQEDNQHSSSNQLSETQLQQHHQAVLEDLRRDDRHRQDRQ 61
+K S + R++DN + Q+ + + +Q V D + D++
Sbjct: 247 RKADSNIVVKL-EFREKDNDNKVVLQIEKKKFDYFNQDVFRDNNGKALLKFDKE 299
>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic
component; Reviewed.
Length = 311
Score = 29.6 bits (67), Expect = 2.5
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 263 PLNLAAGPPAEHSHHHSHHHHDSGD 287
PL + H H H H+ D
Sbjct: 111 PLLMKGAHDDHHDDDHDHAGHEKSD 135
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 29.5 bits (66), Expect = 3.6
Identities = 37/227 (16%), Positives = 63/227 (27%), Gaps = 33/227 (14%)
Query: 105 RLHCRPRPVSMRRDNIHPRKRRPKNAKRELSGGESPGYAFGGATRRAKWCATRAASTIAS 164
RL + P+S+R + +E G + G+ + + R S A
Sbjct: 36 RLQRKLNPISIRNG---ADNDIINSESKESFGKYALGHQIFSSFSSSPKLFQRRNS--AG 90
Query: 165 TVDRVPCPCDATTFTRANDARRT-PNVGNVEHSHHHSHHHHDSGDNKSLSSGDESSSISL 223
+ P +T+ +ND + P ++ + + DSG + +
Sbjct: 91 PITHSPSATSSTSSLNSNDGDQFSPASDSLSFNPSSTQSRKDSGPGDGSPVQKRKNPLLP 150
Query: 224 HSFISASLHHAPFN--------VGAPGGNSPPSHYALNLSPLCEDNLP-----------L 264
S S H P GAP S S + P
Sbjct: 151 SS--STHGTHPPIVFTDNNGSHAGAPNARSRK-EIPSLGSQSMQLPSPHFRQKFSSSDTS 207
Query: 265 NLAAGPPAEHSHHHSHHHHDSGDNKSLSSGDESSSISLHSFISASLH 311
N + P + H S S + + HS S +
Sbjct: 208 NGFSYP-----SIRKNSRHSSNSMPSFPHSSTAVLLKRHSGSSGASL 249
>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region. SelP is the
only known eukaryotic selenoprotein that contains
multiple selenocysteine (Sec) residues, and accounts for
more than 50% of the selenium content of rat and human
plasma. It is thought to be glycosylated. SelP may have
antioxidant properties. It can attach to epithelial
cells, and may protect vascular endothelial cells
against peroxynitrite toxicity. The high selenium
content of SelP suggests that it may be involved in
selenium intercellular transport or storage. The
promoter structure of bovine SelP suggest that it may be
involved in countering heavy metal intoxication, and may
also have a developmental function. The N-terminal
region of SelP can exist independently of the C terminal
region. Zebrafish selenoprotein Pb lacks the C terminal
Sec-rich region, and a protein encoded by the rat SelP
gene and lacking this region has also been reported.
N-terminal region contains a conserved SecxxCys motif,
which is similar to the CysxxCys found in thioredoxins.
It is speculated that the N terminal region may adopt a
thioredoxin fold and catalyze redox reactions. The
N-terminal region also contains a His-rich region, which
is thought to mediate heparin binding. Binding to
heparan proteoglycans could account for the membrane
binding properties of SelP. The function of the
bacterial members of this family is uncharcterised.
Length = 238
Score = 28.7 bits (64), Expect = 3.7
Identities = 12/42 (28%), Positives = 13/42 (30%)
Query: 271 PAEHSHHHSHHHHDSGDNKSLSSGDESSSISLHSFISASLHH 312
H+HHH H HH G N S HH
Sbjct: 194 HQGHAHHHPHGHHHPGSNSHSESQQPDPDKPTEPPSGLHHHH 235
Score = 28.3 bits (63), Expect = 5.1
Identities = 12/39 (30%), Positives = 13/39 (33%)
Query: 195 HSHHHSHHHHDSGDNKSLSSGDESSSISLHSFISASLHH 233
H+HHH H HH G N S HH
Sbjct: 197 HAHHHPHGHHHPGSNSHSESQQPDPDKPTEPPSGLHHHH 235
>gnl|CDD|238499 cd01017, AdcA, Metal binding protein AcdA. These proteins have
been shown to function in the ABC uptake of Zn2+ and
Mn2+ and in competence for genetic transformation and
adhesion. The AcdA proteins belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
They are comprised of two globular subdomains connected
by a long alpha helix and they bind their ligand in the
cleft between these domains. In addition, many of these
proteins have a low complexity region containing metal
binding histidine-rich motif (repetitive HDH sequence).
Length = 282
Score = 28.8 bits (65), Expect = 4.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 260 DNLPLNLAAGPPAEHSHHHSHHHHD 284
+ L A G +H H HSHHH D
Sbjct: 86 KGIKLLKAGGAEHDHDHSHSHHHGD 110
Score = 28.0 bits (63), Expect = 8.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 259 EDNLPLNLAAGPPAEHSHHHSHHHHDSGDN 288
E + + L AEH H HSH HH +
Sbjct: 83 EASKGIKLLKAGGAEHDHDHSHSHHHGDYD 112
>gnl|CDD|235637 PRK05888, PRK05888, NADH dehydrogenase subunit I; Provisional.
Length = 164
Score = 27.9 bits (63), Expect = 5.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 88 RRYPSGEMVCNACGL 102
RR P+GE C AC L
Sbjct: 51 RRDPNGEERCIACKL 65
>gnl|CDD|217749 pfam03824, NicO, High-affinity nickel-transport protein. High
affinity nickel transporters involved in the
incorporation of nickel into H2-uptake hydrogenase and
urease enzymes. Essential for the expression of
catalytically active hydrogenase and urease. Ion uptake
is dependent on proton motive force. HoxN in Alcaligenes
eutrophus is thought to be an integral membrane protein
with seven transmembrane helices. The family also
includes a cobalt transporter.
Length = 278
Score = 27.7 bits (62), Expect = 9.1
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 264 LNLAAGPPAEHSHHHSHHHHDSGDNKSLSSGDESSSISLHSFISASLHHAPFN 316
L+ GP H H + G D ++ ++L + ++L F+
Sbjct: 129 LSRILGPRLVTKHWHMYPVGGLGF-------DTATEVALLAPSPSALIGLSFD 174
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.128 0.395
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,231,270
Number of extensions: 1557206
Number of successful extensions: 1824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1628
Number of HSP's successfully gapped: 87
Length of query: 356
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 258
Effective length of database: 6,590,910
Effective search space: 1700454780
Effective search space used: 1700454780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.0 bits)