RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9606
         (356 letters)



>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
           {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 66

 Score = 80.4 bits (198), Expect = 5e-20
 Identities = 33/63 (52%), Positives = 43/63 (68%)

Query: 70  KRADLTCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSMRRDNIHPRKRRPKN 129
           KRA   C+NC T  TT+WRR P G+ VCNACGLYY+LH   RP++MR+D I  R R+  +
Sbjct: 1   KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKVSS 60

Query: 130 AKR 132
             +
Sbjct: 61  KGK 63


>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1
           {Emericella nidulans [TaxId: 162425]}
          Length = 42

 Score = 66.4 bits (162), Expect = 4e-15
 Identities = 23/41 (56%), Positives = 31/41 (75%)

Query: 75  TCTNCNTKVTTIWRRYPSGEMVCNACGLYYRLHCRPRPVSM 115
           TCTNC T+ T +WRR P G+ +CNACGL+ +LH   RP+S+
Sbjct: 2   TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL 42


>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 39

 Score = 60.5 bits (147), Expect = 6e-13
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 76  CTNCNTKVTTIWRRYPSGEMVCNACGLYYRLH 107
           C NC    T +WRR  +G  +CNACGLY++++
Sbjct: 5   CVNCGATATPLWRRDRTGHYLCNACGLYHKMN 36


>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
           N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 30.2 bits (68), Expect = 0.044
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 74  LTCTNCNTKVTTIWRRYPSGEMVCNACGL 102
           +TC N       +   Y +G+M+C  CGL
Sbjct: 12  VTCPNHPD--AILVEDYRAGDMICPECGL 38


>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
           N-terminal domain {Archaeon Pyrococcus furiosus [TaxId:
           2261]}
          Length = 50

 Score = 29.7 bits (67), Expect = 0.058
 Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)

Query: 73  DLTCTNCNTKVTTIWRRYPSGEMVCNACGL 102
              C  C +    +      GE+VC  CG 
Sbjct: 5   QKVCPACES--AELIYDPERGEIVCAKCGY 32


>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 124

 Score = 29.7 bits (66), Expect = 0.23
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query: 33  QLSETQLQQHHQAVL---EDLRRDDRHRQDRQSNEQQIIPKRADL----TCTNCNTKVTT 85
           +L++ + ++    V+   E +   ++ R  R  +  + + K         C  C  ++  
Sbjct: 2   ELTDEE-KEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGM 60

Query: 86  IWRRYPS----GEMVCNACGLYYRLHCRPRPV 113
           +           + VC  CG+    + RP PV
Sbjct: 61  LGSASVVCEDCKKNVCTKCGVETSNN-RPHPV 91


>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus),
           alpha-chain [TaxId: 10090]}
          Length = 110

 Score = 27.0 bits (59), Expect = 1.4
 Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 1/90 (1%)

Query: 159 ASTIASTVDRVPCPCDATTFTRANDARRTPNVGNVEHSHHHSHHHHDSGDNKSLSSGDES 218
                S  D +   C+ +              G        +    + G ++   +    
Sbjct: 8   GQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNK 67

Query: 219 SSISLHSFISAS-LHHAPFNVGAPGGNSPP 247
            + S H   ++     +     A  G +  
Sbjct: 68  EATSFHLQKASVQESDSAVYYCALSGGNNK 97


>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 186

 Score = 27.9 bits (62), Expect = 1.4
 Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 6/57 (10%)

Query: 11 SSTQSYRNSLNRQEDNQHSSSNQLSETQLQQHHQAVLEDLRRDDRHRQDRQSNEQQI 67
             Q     +   E+ Q          + Q   Q        +  ++   +   QQ+
Sbjct: 18 KRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQ------DLNGNNQSVTRQKMQQL 68


>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 56

 Score = 23.7 bits (51), Expect = 8.6
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 1  MYLKKDQKKGSSTQSYRNSLNRQEDNQHSSS 31
           Y K  QK+          L R+E+   +SS
Sbjct: 25 EYHKARQKQIQEDWELAERLQREEEEAFASS 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.128    0.395 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,288,745
Number of extensions: 57362
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 18
Length of query: 356
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,226,816
Effective search space: 331240320
Effective search space used: 331240320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.6 bits)