BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy961
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04462|SYVC_RAT Valine--tRNA ligase OS=Rattus norvegicus GN=Vars PE=2 SV=2
Length = 1264
Score = 82.4 bits (202), Expect = 7e-16, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 49/73 (67%)
Query: 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
S +D WI SRLA+AV N+ FQ Y+F VT+A Y+ WLYELCDVYLEC+KPV+ +
Sbjct: 981 SLVDRWIRSRLAEAVRLSNEGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGVDQV 1040
Query: 104 EKANAARTLVTSI 116
A +TL T +
Sbjct: 1041 AADCARQTLYTCL 1053
>sp|P26640|SYVC_HUMAN Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4
Length = 1264
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
S +D WI SRL +AV N+ FQ Y+F VT+A Y+ WLYELCDVYLEC+KPV+ +
Sbjct: 981 SLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGVDQV 1040
Query: 104 EKANAARTLVTSI 116
A +TL T +
Sbjct: 1041 AAECARQTLYTCL 1053
>sp|Q9Z1Q9|SYVC_MOUSE Valine--tRNA ligase OS=Mus musculus GN=Vars PE=2 SV=1
Length = 1263
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 48/73 (65%)
Query: 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
S +D WI SRL +AV N+ FQ Y+F +T+A Y+ WLYELCDVYLEC+KPV+ +
Sbjct: 980 SLVDRWIRSRLTEAVRLSNEGFQAYDFPAITTAQYSFWLYELCDVYLECLKPVLNGVDQV 1039
Query: 104 EKANAARTLVTSI 116
A +TL T +
Sbjct: 1040 AAECARQTLYTCL 1052
>sp|P49696|SYVC_TAKRU Valine--tRNA ligase OS=Takifugu rubripes GN=vars PE=3 SV=1
Length = 1217
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 47 DSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVM----ADGSL 102
D WILSRL+ AVA C+ AF+ Y+F +T+A YN WLYELCDVYLE +KPV DGS
Sbjct: 931 DRWILSRLSTAVAQCDAAFRTYDFPAITTAIYNFWLYELCDVYLESVKPVFIKAKEDGSC 990
Query: 103 IEKANAAR 110
A R
Sbjct: 991 ERPAAVCR 998
>sp|Q9U1Q4|SYV_CAEEL Valine--tRNA ligase OS=Caenorhabditis elegans GN=vrs-2 PE=1 SV=1
Length = 1050
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 37/54 (68%)
Query: 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVM 97
+P D WILSRLA AV N+A + Y F T+ YN WLY+ CDVY+E IKPV+
Sbjct: 762 TPTDLWILSRLAKAVKETNEALKAYNFTQATTVTYNFWLYDFCDVYVETIKPVL 815
>sp|Q3U2A8|SYVM_MOUSE Valine--tRNA ligase, mitochondrial OS=Mus musculus GN=Vars2 PE=2
SV=2
Length = 1060
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMA 98
SP+D+WILSRLA A + C + F E + VT Y+ WL+ LCDVYLE +KPV++
Sbjct: 777 SPMDAWILSRLAFAASECERGFLSRELSLVTHTLYHFWLHNLCDVYLEAVKPVLS 831
>sp|Q6MG21|SYVM_RAT Valine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Vars2
PE=3 SV=1
Length = 1065
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMA 98
SP+D+WILSRLA A C + F E + VT Y+ WL+ LCDVYLE +KPV++
Sbjct: 777 SPMDAWILSRLAFAANECERGFLSRELSLVTHTLYHFWLHNLCDVYLEAVKPVLS 831
>sp|Q5ST30|SYVM_HUMAN Valine--tRNA ligase, mitochondrial OS=Homo sapiens GN=VARS2 PE=1
SV=2
Length = 1063
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVM 97
SP+D+WILSRLA A C + F E + VT A ++ WL+ LCDVYLE +KPV+
Sbjct: 776 SPMDAWILSRLALAAQECERGFLTRELSLVTHALHHFWLHNLCDVYLEAVKPVL 829
>sp|O75005|SYV_SCHPO Valine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=vas2 PE=3 SV=1
Length = 980
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
S ++ WI RL A A NK ++ F TSA + WLYELCDVY+E K +++DG+ +
Sbjct: 771 SLVEKWIFHRLNIAAAAMNKNMEEMNFLQATSAVHQFWLYELCDVYIENSKYLLSDGTEV 830
Query: 104 EKANAARTLVT 114
++ +A +TL T
Sbjct: 831 QQESAKQTLYT 841
>sp|Q767M3|SYVM_PIG Valine--tRNA ligase, mitochondrial OS=Sus scrofa GN=VARS2 PE=3 SV=1
Length = 1062
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMA 98
SP+D+WILS LA C + F E VT A ++ WL+ LCDVYLE +KPV++
Sbjct: 777 SPMDAWILSCLARTAQECERGFLTRELALVTHALHHFWLHNLCDVYLEAVKPVLS 831
>sp|Q5TM74|SYVM_MACMU Valine--tRNA ligase, mitochondrial OS=Macaca mulatta GN=VARS2 PE=3
SV=2
Length = 1064
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 46 IDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVM 97
+D+WILSRLA C + F E + VT A ++ WL+ LCDVYLE +KPV+
Sbjct: 779 MDAWILSRLALTARECERGFLTRELSLVTHALHHFWLHNLCDVYLEAVKPVL 830
>sp|B0BR94|SYV_ACTPJ Valine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 3
(strain JL03) GN=valS PE=3 SV=1
Length = 954
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 32 NAALD-QASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYL 90
N LD A +V+ S D WI S+ V +A +Y F+ +A Y+ E CD YL
Sbjct: 661 NDKLDLSAGEVEYSLADRWIESKFNRTVGEFREALSQYRFDLAANAIYDFTWNEFCDWYL 720
Query: 91 ECIKPVMADGSLIEKANAARTLV 113
E KPV A+G+ +K A++TLV
Sbjct: 721 ELTKPVFANGTEAQKRGASQTLV 743
>sp|B3GYI3|SYV_ACTP7 Valine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 7
(strain AP76) GN=valS PE=3 SV=1
Length = 954
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 32 NAALD-QASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYL 90
N LD A +V+ S D WI S+ V +A +Y F+ +A Y+ E CD YL
Sbjct: 661 NDKLDLSAGEVEYSLADRWIESKFNRTVGEFREALSQYRFDLAANAIYDFTWNEFCDWYL 720
Query: 91 ECIKPVMADGSLIEKANAARTLV 113
E KPV A+G+ +K A++TLV
Sbjct: 721 ELTKPVFANGTEAQKRGASQTLV 743
>sp|A3N2F0|SYV_ACTP2 Valine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 5b
(strain L20) GN=valS PE=3 SV=1
Length = 954
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 32 NAALD-QASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYL 90
N LD A +V+ S D WI S+ V +A +Y F+ +A Y+ E CD YL
Sbjct: 661 NDKLDLSAGEVEYSLADRWIESKFNRTVGEFREALSQYRFDLAANAIYDFTWNEFCDWYL 720
Query: 91 ECIKPVMADGSLIEKANAARTLV 113
E KPV A+G+ +K A++TLV
Sbjct: 721 ELTKPVFANGTEAQKRGASQTLV 743
>sp|P07806|SYV_YEAST Valine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=VAS1 PE=1 SV=2
Length = 1104
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI 103
S ++ WIL +L + N+A K +F T TS+ Y W Y +CDVY+E K ++ +GS I
Sbjct: 822 SLVEKWILHKLTETSKIVNEALDKRDFLTSTSSIYEFW-YLICDVYIENSKYLIQEGSAI 880
Query: 104 EKANAARTL 112
EK +A TL
Sbjct: 881 EKKSAKDTL 889
>sp|Q5WYI0|SYV_LEGPL Valine--tRNA ligase OS=Legionella pneumophila (strain Lens) GN=valS
PE=3 SV=1
Length = 921
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGS 101
+ SP D WILSRL + V+ + F+ Y F+ + + Y +E CD YLE KP++ D
Sbjct: 637 QYSPADQWILSRLQNTVSKVHHYFETYRFDLLANTLYEFVWHEYCDWYLELSKPILQDDQ 696
Query: 102 LIE--KANAARTLV 113
+ K RTL+
Sbjct: 697 ALSAMKRGTRRTLI 710
>sp|Q5ZXL2|SYV_LEGPH Valine--tRNA ligase OS=Legionella pneumophila subsp. pneumophila
(strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=valS
PE=3 SV=1
Length = 921
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGS 101
+ SP D WILSRL + V+ + F+ Y F+ + + Y +E CD YLE KP++ D
Sbjct: 637 QYSPADQWILSRLQNTVSKVHHYFETYRFDLLANTLYEFVWHEYCDWYLELSKPILQDDQ 696
Query: 102 LIE--KANAARTLV 113
+ K RTL+
Sbjct: 697 ALSAMKRGTRRTLI 710
>sp|Q5X728|SYV_LEGPA Valine--tRNA ligase OS=Legionella pneumophila (strain Paris)
GN=valS PE=3 SV=1
Length = 921
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGS 101
+ SP D WILSRL + V+ + F+ Y F+ + + Y +E CD YLE KP++ D
Sbjct: 637 QYSPADQWILSRLQNTVSKVHHYFETYRFDLLANTLYEFVWHEYCDWYLELSKPILQDDQ 696
Query: 102 LIE--KANAARTLV 113
+ K RTL+
Sbjct: 697 ALSAMKRGTRRTLI 710
>sp|Q86KU2|SYVC_DICDI Probable valine--tRNA ligase, cytoplasmic OS=Dictyostelium
discoideum GN=valS1 PE=3 SV=1
Length = 1072
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 25 KKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYE 84
K + D + L Q++ + + WIL+ A+ + F++Y+F+ VT+A Y+ WL E
Sbjct: 775 KPESFDASKLLQQSNAINL-----WILNAAQRAITLSEEGFKEYDFSKVTTAIYSFWLNE 829
Query: 85 LCDVYLECIKPVMA 98
+CDVYLE K + +
Sbjct: 830 MCDVYLEMTKSIFS 843
>sp|Q7VN93|SYV_HAEDU Valine--tRNA ligase OS=Haemophilus ducreyi (strain 35000HP / ATCC
700724) GN=valS PE=3 SV=1
Length = 961
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 32 NAALD-QASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYL 90
N LD A +V+ S D WI S V +A +Y F+ +A Y + CD YL
Sbjct: 668 NDKLDLSAGEVEYSLADRWIESSFNRTVGEFREALTQYRFDLAANAIYEFTWNQFCDWYL 727
Query: 91 ECIKPVMADGSLIEKANAARTLVT 114
E KPV A+GS +K ++TLV+
Sbjct: 728 ELTKPVFANGSDAQKRATSKTLVS 751
>sp|P28350|SYV_NEUCR Valine--tRNA ligase, mitochondrial OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=cyt-20 PE=1 SV=1
Length = 1093
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 24 KKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLY 83
K QD LD A+ S + WIL R+ AV N+A + EF+ T Y +
Sbjct: 793 KLPQDFMPKGELDTAN---FSVPEKWILHRMNVAVKGMNEALEAREFSRATKVAYQFFYD 849
Query: 84 ELCDVYLECIKPVMADGSLIEKANAARTL 112
ELCDV++E K +++DG+ E+ + +TL
Sbjct: 850 ELCDVFIENSKGILSDGTPEEQQSVQQTL 878
>sp|Q9CMK5|SYV_PASMU Valine--tRNA ligase OS=Pasteurella multocida (strain Pm70) GN=valS
PE=3 SV=1
Length = 954
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 32 NAALDQAS-KVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYL 90
N LD + V+ S D WI S V A ++ F+ +A Y + CD YL
Sbjct: 661 NDKLDLSEGSVEYSVADRWIQSEFNRTVEAFRNALAQFRFDLCATALYEFTWNQFCDWYL 720
Query: 91 ECIKPVMADGSLIEKANAARTLV 113
E KPV+ +GS+ +K A++TL+
Sbjct: 721 ELTKPVLVNGSVAQKRGASQTLI 743
>sp|A7HJX5|SYV_FERNB Valine--tRNA ligase OS=Fervidobacterium nodosum (strain ATCC 35602
/ DSM 5306 / Rt17-B1) GN=valS PE=3 SV=1
Length = 867
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 39 SKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIK 94
SK+K+S D WILSRL + ++A Y+FN + YN + ELCD Y+E +K
Sbjct: 597 SKLKLS--DKWILSRLQKTIQKISEALDSYDFNIAANEIYNFFWDELCDWYIEAVK 650
>sp|Q0VSA8|SYV_ALCBS Valine--tRNA ligase OS=Alcanivorax borkumensis (strain SK2 / ATCC
700651 / DSM 11573) GN=valS PE=3 SV=1
Length = 931
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 32 NAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLE 91
+ +D S+V++S D WI+S L A ++A + F+ + A Y E CD YLE
Sbjct: 629 DCGIDTDSEVELSLADRWIISALQRAELEVSEALDSFRFDVASHAAYEFIWNEYCDWYLE 688
Query: 92 CIKPVM--ADGSLIEKANAARTLVT 114
KPV+ + S +K RTLVT
Sbjct: 689 LSKPVLWGDEYSDAQKRGTRRTLVT 713
>sp|Q5Z048|SYV_NOCFA Valine--tRNA ligase OS=Nocardia farcinica (strain IFM 10152)
GN=valS PE=3 SV=1
Length = 893
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 47 DSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIK-PVMADGSLIEK 105
D WIL RL + +A + AF YEF A Y+ ELCD YLE K ADG+ +
Sbjct: 626 DRWILDRLDEVLAEVDAAFDAYEFGKACEALYHFAWDELCDWYLELAKVQFAADGA---R 682
Query: 106 ANAARTLVTSIV 117
A + RT++ +++
Sbjct: 683 AESTRTVLGTVL 694
>sp|Q4QKA4|SYV_HAEI8 Valine--tRNA ligase OS=Haemophilus influenzae (strain 86-028NP)
GN=valS PE=3 SV=1
Length = 954
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 32 NAALDQAS-KVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYL 90
N LD + +++ S D WI S V T + +Y F+ +A Y + CD YL
Sbjct: 661 NEKLDLSEGEIEFSLADRWIQSEFNRTVETFRNSLSQYRFDLCANAIYEFTWNQFCDWYL 720
Query: 91 ECIKPVMADGSLIEKANAARTLV 113
E KPV A+G+ + A++TLV
Sbjct: 721 ELTKPVFANGNAAQIRAASQTLV 743
>sp|A5UEN9|SYV_HAEIG Valine--tRNA ligase OS=Haemophilus influenzae (strain PittGG)
GN=valS PE=3 SV=1
Length = 954
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 32 NAALDQAS-KVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYL 90
N LD + +++ S D WI S V T + +Y F+ +A Y + CD YL
Sbjct: 661 NEKLDLSQGEIEFSLADRWIQSEFNRTVETFRNSLSQYRFDLCANAIYEFTWNQFCDWYL 720
Query: 91 ECIKPVMADGSLIEKANAARTLV 113
E KPV A+G+ + A++TLV
Sbjct: 721 ELTKPVFANGNAAQIRAASQTLV 743
>sp|P43834|SYV_HAEIN Valine--tRNA ligase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=valS PE=3 SV=1
Length = 954
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 32 NAALDQAS-KVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYL 90
N LD + +++ S D WI S V T + +Y F+ +A Y + CD YL
Sbjct: 661 NEKLDLSQGEIEFSLADRWIQSEFNRTVETFRSSLSQYRFDLCANAIYEFTWNQFCDWYL 720
Query: 91 ECIKPVMADGSLIEKANAARTLV 113
E KPV A+G+ + A++TLV
Sbjct: 721 ELTKPVFANGNAAQIRAASQTLV 743
>sp|A5UBZ9|SYV_HAEIE Valine--tRNA ligase OS=Haemophilus influenzae (strain PittEE)
GN=valS PE=3 SV=1
Length = 954
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 32 NAALDQAS-KVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYL 90
N LD + +++ S D WI S V T + +Y F+ +A Y + CD YL
Sbjct: 661 NDKLDLSEGEIEFSLADRWIQSEFNRTVETFRNSLSQYRFDLCANAIYEFTWNQFCDWYL 720
Query: 91 ECIKPVMADGSLIEKANAARTLV 113
E KPV A+G+ + A++TLV
Sbjct: 721 ELTKPVFANGNAAQIRAASQTLV 743
>sp|Q488M6|SYV_COLP3 Valine--tRNA ligase OS=Colwellia psychrerythraea (strain 34H / ATCC
BAA-681) GN=valS PE=3 SV=1
Length = 973
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 37 QASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPV 96
+A +++S D WI+ + V T ++AF Y F+ + A Y + CD YLE KPV
Sbjct: 684 KAGDMELSLADRWIIGQFEQTVKTVHEAFDTYRFDLASQALYEFTWNQFCDWYLELTKPV 743
Query: 97 MADGSLIEKANAARTLV 113
+ + ++ TLV
Sbjct: 744 LFKENEAQQRGTRHTLV 760
>sp|Q54I78|SYVM_DICDI Probable valine--tRNA ligase, mitochondrial OS=Dictyostelium
discoideum GN=valS2 PE=3 SV=2
Length = 1051
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 46 IDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEK 105
ID WIL +L+ V N++++ + + Y+ + Y+ CD+Y+ECIK ++ ++ K
Sbjct: 742 IDKWILLKLSKLVEIVNESYKSNNLSIAAQSLYSFFQYDFCDIYIECIKADLSK-PILSK 800
Query: 106 ANAARTLVTSIV 117
N +LV + V
Sbjct: 801 QNEHSSLVLASV 812
>sp|P36432|SYV_HAEPA Valine--tRNA ligase (Fragment) OS=Haemophilus parainfluenzae
GN=valS PE=3 SV=1
Length = 378
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 32 NAALDQAS-KVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYL 90
N LD + +++ S D WI S V + A +Y F+ +A Y + CD YL
Sbjct: 86 NDKLDLSQGEIEFSVADRWIQSEFNRTVESFRSALSQYRFDLCANAIYEFTWNQFCDWYL 145
Query: 91 ECIKPVMADGSLIEKANAARTLV 113
E KPV A+G+ + A++TLV
Sbjct: 146 ELTKPVFANGNAAQIRAASQTLV 168
>sp|C1D6J9|SYV_LARHH Valine--tRNA ligase OS=Laribacter hongkongensis (strain HLHK9)
GN=valS PE=3 SV=1
Length = 937
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 36 DQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP 95
D++ ++ S +D WI+SRL + A +A Y F+ + Y E CD Y+E K
Sbjct: 658 DESLPLEYSFVDKWIISRLQELEAAVTEALDTYRFDMASQLIYEFVWNEYCDWYVELAKV 717
Query: 96 VMADGSLIEKANAARTLV 113
+A+G+ ++ RTLV
Sbjct: 718 QLANGNEAQQRATRRTLV 735
>sp|Q9CBY7|SYV_MYCLE Valine--tRNA ligase OS=Mycobacterium leprae (strain TN) GN=valS
PE=3 SV=1
Length = 886
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 28/54 (51%)
Query: 47 DSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADG 100
D WIL RL A + AF YEF+ A Y+ E CD YLE K +ADG
Sbjct: 621 DRWILGRLEQVRAEVDSAFDGYEFSRACEALYHFAWDEFCDWYLELAKAQLADG 674
>sp|Q6MQK8|SYV_BDEBA Valine--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=valS PE=3 SV=1
Length = 894
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 39 SKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMA 98
+KV +S D WI+++L + T +A ++ F+ ++A Y + CD Y+E KP++
Sbjct: 607 NKVHISVFDQWIITKLEEVTKTVEEAMEQERFSDASTALYQFIWNQFCDWYIEFTKPILN 666
Query: 99 DGSLIEKA 106
+ EKA
Sbjct: 667 GNNAEEKA 674
>sp|Q606C1|SYV_METCA Valine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC 33009
/ NCIMB 11132 / Bath) GN=valS PE=3 SV=1
Length = 921
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 32/66 (48%)
Query: 47 DSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKA 106
D WI SR AV T +A +Y F+ A Y E CD YLE K V+ G+ E+
Sbjct: 644 DRWIRSRFQAAVGTVTEAMGQYRFDLAAQALYEFVWNEYCDWYLELAKVVLQSGNEAERR 703
Query: 107 NAARTL 112
+TL
Sbjct: 704 GTRQTL 709
>sp|Q72E47|SYV_DESVH Valine--tRNA ligase OS=Desulfovibrio vulgaris (strain Hildenborough
/ ATCC 29579 / NCIMB 8303) GN=valS PE=3 SV=1
Length = 884
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 25/52 (48%)
Query: 49 WILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADG 100
WIL RL + A+ Y FN V Y W E CD YLE IKP M G
Sbjct: 610 WILHRLEELKASQAAGIDGYRFNEVAQGLYRFWWNEFCDWYLELIKPDMQAG 661
>sp|P93736|SYV_ARATH Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=1 SV=2
Length = 1108
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 49 WILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLI---EK 105
WILS L A++ + +EF+ + Y W Y+ CDVY+E IKP A + E+
Sbjct: 818 WILSVLNKAISKTVVSLDAFEFSDAANTIYAWWQYQFCDVYIEAIKPYFAGDNPTFASER 877
Query: 106 ANAARTLVTSI 116
A+A L S+
Sbjct: 878 AHAQHALWISL 888
>sp|Q493Z9|SYV_BLOPB Valine--tRNA ligase OS=Blochmannia pennsylvanicus (strain BPEN)
GN=valS PE=3 SV=1
Length = 957
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 25 KKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYE 84
K QD ++ +++ S S D WI+++ V +K + Y F+ + + + ++
Sbjct: 661 KNQDCGISININEKS---FSLADRWIITKFHQTVQIFHKKLEIYRFDEIANILHEFIWHQ 717
Query: 85 LCDVYLECIKPVMADGSLIEKANAARTLVT 114
CD YLE KP++ G+ +E TL+T
Sbjct: 718 FCDWYLELTKPILYHGNALELRGTRYTLIT 747
>sp|Q6GG42|SYV_STAAR Valine--tRNA ligase OS=Staphylococcus aureus (strain MRSA252)
GN=valS PE=3 SV=1
Length = 876
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 16/119 (13%)
Query: 3 TDRVSAPYTHLTR-WYG------HVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLA 55
T++V + + + + W G ++ E K +D D++ L A D WIL+RL
Sbjct: 561 TEKVESVWNFINKIWNGARFSLMNIGEDFKVEDIDLSGNLSLA--------DKWILTRLN 612
Query: 56 DAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLVT 114
+ +AT KYEF V A YN + CD Y+E K M +G+ E+ R++++
Sbjct: 613 ETIATVTDLSDKYEFGEVGRALYNFIWDDFCDWYIEMSKIPM-NGNDEEQKQVTRSVLS 670
>sp|Q8EBS5|SYV_SHEON Valine--tRNA ligase OS=Shewanella oneidensis (strain MR-1) GN=valS
PE=3 SV=1
Length = 958
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%)
Query: 27 QDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELC 86
QD N+ Q ++++S D WI+ V T ++ Y F+ + Y + C
Sbjct: 659 QDCGPNSPDYQGGEMELSLADRWIIDLFNQTVKTYDEHMASYRFDLAANTLYEFTWNQFC 718
Query: 87 DVYLECIKPVMADGSLIEKANAARTLV 113
D YLE KPV+ +G+ + TLV
Sbjct: 719 DWYLELTKPVLQNGTEAQMRGTRHTLV 745
>sp|Q6DA54|SYV_ERWCT Valine--tRNA ligase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=valS PE=3 SV=1
Length = 951
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 34/75 (45%)
Query: 40 KVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMAD 99
++++S D WIL+ V A Y F+ + Y + CD YLE KPVM
Sbjct: 667 EMELSLADRWILAEFNRTVKAYRDALDGYRFDIAANILYEFTWNQFCDWYLELTKPVMNG 726
Query: 100 GSLIEKANAARTLVT 114
GS E TLVT
Sbjct: 727 GSEAELRGTRHTLVT 741
>sp|Q5PJB8|SYV_SALPA Valine--tRNA ligase OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=valS PE=3 SV=1
Length = 951
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 25 KKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYE 84
++QD N ++ +S D WIL+ V +A + F+ Y +
Sbjct: 657 EEQDCGFNGG-----EMTLSLADRWILAEFNQTVKAYREALDNFRFDIAAGILYEFTWNQ 711
Query: 85 LCDVYLECIKPVMADGSLIEKANAARTLVT 114
CD YLE KPVM GS E TLVT
Sbjct: 712 FCDWYLELTKPVMTGGSESELRGTRHTLVT 741
>sp|Q8Z118|SYV_SALTI Valine--tRNA ligase OS=Salmonella typhi GN=valS PE=3 SV=1
Length = 951
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 25 KKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYE 84
++QD N ++ +S D WIL+ V +A + F+ Y +
Sbjct: 657 EEQDCGFNGG-----EMTLSLADRWILAEFNQTVKAYREALDNFRFDIAAGILYEFTWNQ 711
Query: 85 LCDVYLECIKPVMADGSLIEKANAARTLVT 114
CD YLE KPVM GS E TLVT
Sbjct: 712 FCDWYLELTKPVMTGGSESELRGTRHTLVT 741
>sp|Q9X2D7|SYV_THEMA Valine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=valS PE=3 SV=1
Length = 865
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 46 IDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEK 105
+D WIL+RL V A + Y+FN YN + + CD Y+E KP + E+
Sbjct: 602 VDKWILTRLNKTVEEVTNALENYDFNIAARTIYNFFWDDFCDWYIEASKPRLK----TEE 657
Query: 106 ANAARTLVTSIV 117
N +T++ ++
Sbjct: 658 RNLVQTVLVKVL 669
>sp|Q57GC5|SYV_SALCH Valine--tRNA ligase OS=Salmonella choleraesuis (strain SC-B67)
GN=valS PE=3 SV=1
Length = 951
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 25 KKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYE 84
++QD N ++ +S D WIL+ V +A + F+ Y +
Sbjct: 657 EEQDCGFNGG-----EMTLSLADRWILAEFNQTVKAYREALDNFRFDIAAGILYEFTWNQ 711
Query: 85 LCDVYLECIKPVMADGSLIEKANAARTLVT 114
CD YLE KPVM GS E TLVT
Sbjct: 712 FCDWYLELTKPVMTGGSESELRGTRHTLVT 741
>sp|Q3A253|SYV_PELCD Valine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 /
Gra Bd 1) GN=valS PE=3 SV=1
Length = 899
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 47 DSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKA 106
+ WIL+RL D A KA ++Y+FN S Y +E CD Y+E K + KA
Sbjct: 623 ERWILTRLIDVAAETGKALEEYKFNEAASVLYAFTWHEFCDWYIELSKDDLYGEDAARKA 682
Query: 107 NAARTLVT 114
+ L T
Sbjct: 683 TSQAVLYT 690
>sp|Q3II73|SYV_PSEHT Valine--tRNA ligase OS=Pseudoalteromonas haloplanktis (strain TAC
125) GN=valS PE=3 SV=1
Length = 951
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 16 WYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTS 75
W L ++ D A D ++ ++ D WIL + V + + Y F+ +
Sbjct: 643 WNASRYVLMNTEEQDCGFATDAQKELSLA--DRWILGQFESTVKSYTEHLDNYRFDLAAN 700
Query: 76 ACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLVT 114
Y ++ CD YLE KPV+ G+ ++ TL+T
Sbjct: 701 TLYEFTWHQFCDWYLELTKPVLFKGNEAQQRGTRNTLIT 739
>sp|Q2YTA0|SYV_STAAB Valine--tRNA ligase OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=valS PE=3 SV=1
Length = 876
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 16/119 (13%)
Query: 3 TDRVSAPYTHLTR-WYG------HVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLA 55
T++V + + + + W G ++ E K +D D++ L A D WIL+RL
Sbjct: 561 TEKVESVWNFINKIWNGARFSLMNIGEDFKVEDIDLSGNLSLA--------DKWILTRLN 612
Query: 56 DAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTLVT 114
+ +AT KYEF V A YN + CD Y+E K M +G+ E+ R++++
Sbjct: 613 ETIATVTDLSDKYEFGEVGRALYNFIWDDFCDWYIEMSKIPM-NGNDEEQKQITRSVLS 670
>sp|Q8EZT8|SYV_LEPIN Valine--tRNA ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=valS
PE=3 SV=2
Length = 882
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 43 VSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP 95
+ P+D WILSR + NKA K+ F + +A Y + CD Y+E +KP
Sbjct: 607 LEPMDQWILSRFNHCLEEYNKAHSKFHFYEMAAAIYEFIWGDFCDWYIELVKP 659
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.130 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,482,694
Number of Sequences: 539616
Number of extensions: 1261313
Number of successful extensions: 3819
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 3273
Number of HSP's gapped (non-prelim): 572
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)