Query psy961
Match_columns 118
No_of_seqs 133 out of 1099
Neff 7.4
Searched_HMMs 29240
Date Sat Aug 17 00:10:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ffy_A Isoleucyl-tRNA syntheta 99.6 4.7E-15 1.6E-19 126.9 8.7 102 14-117 647-750 (917)
2 1gax_A Valrs, valyl-tRNA synth 99.5 2.8E-14 9.6E-19 121.5 10.0 92 15-117 582-673 (862)
3 1ile_A Ilers, isoleucyl-tRNA s 99.3 1.5E-12 5.2E-17 110.2 6.9 101 15-117 646-748 (821)
4 3u1f_A Methionyl-tRNA syntheta 99.2 6E-11 2.1E-15 95.8 10.5 97 15-117 379-476 (542)
5 3kfl_A Methionyl-tRNA syntheta 99.0 2.2E-09 7.4E-14 87.6 11.9 97 14-117 394-492 (564)
6 4dlp_A Aminoacyl-tRNA syntheta 99.0 8.7E-10 3E-14 89.2 9.1 74 42-117 401-475 (536)
7 1wz2_A Leucyl-tRNA synthetase; 98.7 4.6E-08 1.6E-12 84.2 10.0 94 6-117 694-788 (967)
8 1rqg_A Methionyl-tRNA syntheta 98.7 7.3E-08 2.5E-12 80.7 9.5 73 42-116 424-497 (722)
9 2x1l_A Methionyl-tRNA syntheta 98.6 9.9E-08 3.4E-12 76.8 8.7 73 42-116 390-467 (524)
10 3h99_A Methionyl-tRNA syntheta 98.5 2.6E-07 9E-12 75.0 7.8 71 45-117 425-498 (560)
11 1wkb_A Leucyl-tRNA synthetase; 98.3 2.8E-06 9.6E-11 71.7 9.9 67 42-117 721-788 (810)
12 2csx_A Methionyl-tRNA syntheta 98.3 1.2E-06 4.1E-11 70.0 6.5 71 44-116 372-444 (497)
13 4arc_A Leucine--tRNA ligase; l 98.1 8.6E-06 2.9E-10 69.7 8.2 76 4-87 681-758 (880)
14 2d5b_A Methionyl-tRNA syntheta 98.1 1.6E-06 5.5E-11 69.3 3.0 68 47-116 377-445 (500)
15 2v0c_A Aminoacyl-tRNA syntheta 97.9 1.8E-05 6.2E-10 67.6 7.4 77 6-88 681-758 (878)
16 3fnr_A Arginyl-tRNA synthetase 96.2 0.025 8.6E-07 45.2 8.8 49 42-91 368-416 (464)
17 1li5_A Cysrs, cysteinyl-tRNA s 78.9 2.4 8.2E-05 33.5 4.5 38 53-92 334-372 (461)
18 3c8z_A Cysteinyl-tRNA syntheta 67.3 5.6 0.00019 30.8 4.0 30 55-85 358-388 (414)
19 1iq0_A Arginyl-tRNA synthetase 67.0 22 0.00075 28.8 7.6 49 44-94 499-547 (592)
20 2zue_A Arginyl-tRNA synthetase 64.7 52 0.0018 26.9 9.4 47 44-91 543-589 (629)
21 2o35_A Hypothetical protein DU 47.8 19 0.00065 22.9 3.2 22 75-96 38-59 (105)
22 3fyb_A Protein of unknown func 45.1 20 0.00069 22.7 3.0 22 75-96 37-58 (104)
23 1esx_A VPR protein; helix, amp 38.6 63 0.0022 20.2 4.6 37 44-80 13-49 (96)
24 1f7u_A Arginyl-tRNA synthetase 23.6 3E+02 0.01 22.4 8.0 47 44-91 521-567 (607)
25 3ts9_A Interferon-induced heli 20.7 1.9E+02 0.0066 19.1 5.3 54 3-63 76-130 (138)
No 1
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.57 E-value=4.7e-15 Score=126.89 Aligned_cols=102 Identities=17% Similarity=0.232 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhh
Q psy961 14 TRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECI 93 (118)
Q Consensus 14 ~~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~ 93 (118)
++||+.+|.+.+.. +|+|..+.++...++.+|+||++++++++++++++|++|+|+.|++.|++|+++++|++|++++
T Consensus 647 kl~n~~r~~l~nl~--~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~ 724 (917)
T 1ffy_A 647 KIRNTLRFMLGNIN--DFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYG 724 (917)
T ss_dssp HHHHHHHHHHHTST--TCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_pred HHHHHHHHHHhhhh--ccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999887754 4665322233334678999999999999999999999999999999999999889999999999
Q ss_pred cccccCC--ChHHHHHHHHHHHHHhc
Q psy961 94 KPVMADG--SLIEKANAARTLVTSIV 117 (118)
Q Consensus 94 K~~ly~~--~~~~r~~a~~tL~~vl~ 117 (118)
|+|+|+. ++.+|++++++|+.+++
T Consensus 725 k~rl~~~~~~~~~r~~~~~~l~~~l~ 750 (917)
T 1ffy_A 725 KDILYIEQRDSHIRRSMQTVLYQILV 750 (917)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHH
T ss_pred chhhhccCCCcHHHHHHHHHHHHHHH
Confidence 9999974 45678899999999875
No 2
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.53 E-value=2.8e-14 Score=121.46 Aligned_cols=92 Identities=24% Similarity=0.391 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhc
Q psy961 15 RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIK 94 (118)
Q Consensus 15 ~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K 94 (118)
+||+.+|.+.+.. ++.|. ...++.+|+||++++++++++++++|++|+|+.|++.|++|+|+++|+||+|++|
T Consensus 582 l~N~~rf~~~~~~--~~~~~-----~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k 654 (862)
T 1gax_A 582 LYNAARFVLLSRE--GFQAK-----EDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAK 654 (862)
T ss_dssp HHHHHHHHHHHSS--SCCCC-----BCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHhccc--CCCCc-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcc
Confidence 6999888887654 24332 1236789999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChHHHHHHHHHHHHHhc
Q psy961 95 PVMADGSLIEKANAARTLVTSIV 117 (118)
Q Consensus 95 ~~ly~~~~~~r~~a~~tL~~vl~ 117 (118)
+++|++ +++++.||+++|+
T Consensus 655 ~~l~~~----~~~~~~~l~~~l~ 673 (862)
T 1gax_A 655 PALKAG----NAHTLRTLEEVLA 673 (862)
T ss_dssp HHHHTT----BHHHHHHHHHHHH
T ss_pred hhhhcc----HHHHHHHHHHHHH
Confidence 999865 5678899988875
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.33 E-value=1.5e-12 Score=110.17 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCCCCCc-cccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhh
Q psy961 15 RWYGHVTELKKKQDADVNA-ALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECI 93 (118)
Q Consensus 15 ~wn~~~f~l~~~~~~~f~~-~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~ 93 (118)
+||.+.+.+......++.| .... ...+...|+|++++++++++++.++|++|+|+.|++.|++|+|+++|++|++.+
T Consensus 646 l~N~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~ 723 (821)
T 1ile_A 646 LWNVYSFFVTYANLDRPDLKNPPP--PEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRN 723 (821)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCC--STTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHH
T ss_pred HHHHHHHHHHhhccccCCcccccc--cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888877542211123444 2111 224578999999999999999999999999999999999999999999999999
Q ss_pred cccccCCC-hHHHHHHHHHHHHHhc
Q psy961 94 KPVMADGS-LIEKANAARTLVTSIV 117 (118)
Q Consensus 94 K~~ly~~~-~~~r~~a~~tL~~vl~ 117 (118)
|+++|+.. +.+|++++.+|+++++
T Consensus 724 k~~~~~~~~~~~r~~~~~~l~~~l~ 748 (821)
T 1ile_A 724 RRRFWKNEDALDREAAYATLYEALV 748 (821)
T ss_dssp HHHHHTCTTTSSTTHHHHHHHHHHH
T ss_pred hhhcccCCCcHHHHHHHHHHHHHHH
Confidence 99999643 2346688899988874
No 4
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.22 E-value=6e-11 Score=95.79 Aligned_cols=97 Identities=9% Similarity=0.057 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhc
Q psy961 15 RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIK 94 (118)
Q Consensus 15 ~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K 94 (118)
+||...+.+.... ++.........++.+|+||++++++++++++++|++|+|++|++.|++|+ ++|++|++..|
T Consensus 379 l~N~~~r~~~~~~----~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~Y~~~~~ 452 (542)
T 3u1f_A 379 LGNLVMRCTSAKI----NVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVL--RAINAYVTDMA 452 (542)
T ss_dssp HHHHHHHHHCTTT----STTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHC
T ss_pred HHHHHHHHHHhhh----cccCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcC
Confidence 5776666554321 11212222345788999999999999999999999999999999999998 57999999999
Q ss_pred c-cccCCChHHHHHHHHHHHHHhc
Q psy961 95 P-VMADGSLIEKANAARTLVTSIV 117 (118)
Q Consensus 95 ~-~ly~~~~~~r~~a~~tL~~vl~ 117 (118)
+ ++...+..+++++++++.++++
T Consensus 453 pw~l~k~d~~~~~~~l~~~~~~l~ 476 (542)
T 3u1f_A 453 PWKLVKTDPERLRTVLYITLEGVR 476 (542)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHHHHHHHHHHHHH
Confidence 8 5665566566667777666653
No 5
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.04 E-value=2.2e-09 Score=87.62 Aligned_cols=97 Identities=9% Similarity=0.046 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhc-CCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHh
Q psy961 14 TRWYGHVTELKKK-QDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLEC 92 (118)
Q Consensus 14 ~~wn~~~f~l~~~-~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~ 92 (118)
.+||...+.+... ..+++.|+ ...+...|+|++++++++++++.++|++|+|+.|++.|++|+ .+|++|++.
T Consensus 394 ~l~N~~~R~~~~~~~~~g~~p~-----~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~--~~~n~Y~~~ 466 (564)
T 3kfl_A 394 TLGNLVSRCVAPKINVNGMWPE-----PAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVL--RSLNAYVTE 466 (564)
T ss_dssp THHHHHHHHHCTTTSTTSBCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHHHHh
Confidence 3577776665432 22233333 124578999999999999999999999999999999999998 479999999
Q ss_pred hcc-cccCCChHHHHHHHHHHHHHhc
Q psy961 93 IKP-VMADGSLIEKANAARTLVTSIV 117 (118)
Q Consensus 93 ~K~-~ly~~~~~~r~~a~~tL~~vl~ 117 (118)
.|+ +|++++..+.++++.++..+++
T Consensus 467 ~kpW~l~~~~~~~~~~~~~~l~~~l~ 492 (564)
T 3kfl_A 467 NAPWKLVKMDTARLGTVLYVTMEGLR 492 (564)
T ss_dssp HCHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred cCChhhhcCCHHHHHHHHHHHHHHHH
Confidence 999 8887666556677888877764
No 6
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.03 E-value=8.7e-10 Score=89.24 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcc-cccCCChHHHHHHHHHHHHHhc
Q psy961 42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP-VMADGSLIEKANAARTLVTSIV 117 (118)
Q Consensus 42 ~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~-~ly~~~~~~r~~a~~tL~~vl~ 117 (118)
.+...|+|++++++++++++.++|++|+|++|++.|++|+ ++|++|++..|+ ++..++..++.+++.++..+++
T Consensus 401 ~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~ 475 (536)
T 4dlp_A 401 AFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVV--AEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLR 475 (536)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999998 689999999998 6665555555667777777653
No 7
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=98.74 E-value=4.6e-08 Score=84.21 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=69.2
Q ss_pred ccccchhhH-HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHh
Q psy961 6 VSAPYTHLT-RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYE 84 (118)
Q Consensus 6 ~~~~~~~l~-~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ 84 (118)
+..+.+.+. +||...+.+.+. .|. ...++.+|+||++++++++++++++|++|+|+.|++.++.|+++.
T Consensus 694 ~~~~~~~l~rl~n~~~~~~~~~-----~~~-----~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~ 763 (967)
T 1wz2_A 694 VGKLRKQIERFYELISQFAEYE-----VKG-----NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND 763 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSC-----CCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-----CCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 344445555 466666553221 111 123577999999999999999999999999999999887777765
Q ss_pred hhHHHHHhhcccccCCChHHHHHHHHHHHHHhc
Q psy961 85 LCDVYLECIKPVMADGSLIEKANAARTLVTSIV 117 (118)
Q Consensus 85 ls~~Yle~~K~~ly~~~~~~r~~a~~tL~~vl~ 117 (118)
+++|++.+|++- +++++.+|+++|+
T Consensus 764 -~n~Yi~~~k~~~-------~~~~~~~l~~~l~ 788 (967)
T 1wz2_A 764 -LRWYLRRTEGRD-------DEAKRYVLRTLAD 788 (967)
T ss_dssp -HHHHHHHTTTCC-------CHHHHHHHHHHHH
T ss_pred -HHHHHHhccchh-------HHHHHHHHHHHHH
Confidence 789999999641 2478888888875
No 8
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=98.69 E-value=7.3e-08 Score=80.74 Aligned_cols=73 Identities=11% Similarity=0.220 Sum_probs=60.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccCCCh-HHHHHHHHHHHHHh
Q psy961 42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSL-IEKANAARTLVTSI 116 (118)
Q Consensus 42 ~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~~~~-~~r~~a~~tL~~vl 116 (118)
.+...|+|++++++++++++.++|++|+|+.|++.|++|+ ++|++|++..|+.++..++ .+.+++.+++.+++
T Consensus 424 ~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~--~~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l 497 (722)
T 1rqg_A 424 ELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--SFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIV 497 (722)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCchhhcCCCHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999998 6899999999998876433 33344555555554
No 9
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=98.64 E-value=9.9e-08 Score=76.80 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=58.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcc-cccCCC---h-HHHHHHHHHHHHHh
Q psy961 42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP-VMADGS---L-IEKANAARTLVTSI 116 (118)
Q Consensus 42 ~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~-~ly~~~---~-~~r~~a~~tL~~vl 116 (118)
.+...|+|++++++++++.+.++|++|+|+.|++.|++|+ ..+++|++..|+ +++++. + .+.+++..++.+++
T Consensus 390 ~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l 467 (524)
T 2x1l_A 390 EFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVL--GAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVV 467 (524)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999998 479999999999 677542 2 22234455555554
No 10
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=98.51 E-value=2.6e-07 Score=75.03 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccC---CChHHHHHHHHHHHHHhc
Q psy961 45 PIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMAD---GSLIEKANAARTLVTSIV 117 (118)
Q Consensus 45 ~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~---~~~~~r~~a~~tL~~vl~ 117 (118)
..|+|+++++++++++++++|++|+|+.|++.+++|+ ++|++|++..|+.... .+..++..++.++.++++
T Consensus 425 ~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~ 498 (560)
T 3h99_A 425 LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFR 498 (560)
T ss_dssp CSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999998 7899999999985332 233445566667666654
No 11
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=98.32 E-value=2.8e-06 Score=71.75 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccCCChHHHHHH-HHHHHHHhc
Q psy961 42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANA-ARTLVTSIV 117 (118)
Q Consensus 42 ~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~~~~~~r~~a-~~tL~~vl~ 117 (118)
.++..|+|++++++++++++.++|++|+|+.|++.++.++++. +++|++.+|++ + + ++ +.+|+++++
T Consensus 721 ~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~-~n~yi~~~k~~----~---~-~~~~~~l~~~l~ 788 (810)
T 1wkb_A 721 ELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND-LRWYLRRTEGR----D---D-EAKRYVLRTLAD 788 (810)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHH-HHHHHHHTTTC----C---C-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHhcCc----c---h-hHHHHHHHHHHH
Confidence 3567899999999999999999999999999999886566665 78999999964 1 1 33 677777764
No 12
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=98.28 E-value=1.2e-06 Score=70.05 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccCC--ChHHHHHHHHHHHHHh
Q psy961 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMADG--SLIEKANAARTLVTSI 116 (118)
Q Consensus 44 ~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~~--~~~~r~~a~~tL~~vl 116 (118)
...|+|++++++++++.+.++|++|+|+.|++.+++|+ ..+++|++..|+..... +..+.+++..++.+++
T Consensus 372 ~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l 444 (497)
T 2csx_A 372 GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKERKKEELQKVLYALVDGL 444 (497)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999999999999999 47999999999863322 2223345556665554
No 13
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=98.10 E-value=8.6e-06 Score=69.71 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=56.3
Q ss_pred ccccccchhhHH-HHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHh
Q psy961 4 DRVSAPYTHLTR-WYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQ-KYEFNTVTSACYNLW 81 (118)
Q Consensus 4 ~~~~~~~~~l~~-wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e-~~~f~~a~~~i~~F~ 81 (118)
++++++.+.+.+ ||...+.+..... +. .+...++..|+|+++++++++++|+++|+ +|+|+.|++.|++|+
T Consensus 681 ~~ie~a~rfl~rlwn~~~~~~~~~~~----~~---~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efv 753 (880)
T 4arc_A 681 SGVEGANRFLKRVWKLVYEHTAKGDV----AA---LNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELM 753 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCC----CC---CCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc----cc---cccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 345666677764 7777666553211 11 11234678999999999999999999999 899999999999998
Q ss_pred HHhhhH
Q psy961 82 LYELCD 87 (118)
Q Consensus 82 ~~~ls~ 87 (118)
++++.
T Consensus 754 -n~l~k 758 (880)
T 4arc_A 754 -NKLAK 758 (880)
T ss_dssp -HHHHT
T ss_pred -HHHHh
Confidence 66654
No 14
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=98.07 E-value=1.6e-06 Score=69.26 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhcccccC-CChHHHHHHHHHHHHHh
Q psy961 47 DSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVMAD-GSLIEKANAARTLVTSI 116 (118)
Q Consensus 47 DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K~~ly~-~~~~~r~~a~~tL~~vl 116 (118)
++|++++++++++++.++|++|+|+.|++.|++|+ ..+++|++..|+.... ++..+.+++..++.+++
T Consensus 377 ~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l 445 (500)
T 2d5b_A 377 AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKPWELFKKEPEEARAVLYRVVEGL 445 (500)
T ss_dssp CCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999 5799999999986442 23223345566666554
No 15
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=97.95 E-value=1.8e-05 Score=67.64 Aligned_cols=77 Identities=12% Similarity=0.164 Sum_probs=54.1
Q ss_pred ccccchhhH-HHHHHHHHHHhcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHh
Q psy961 6 VSAPYTHLT-RWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYE 84 (118)
Q Consensus 6 ~~~~~~~l~-~wn~~~f~l~~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ 84 (118)
+.++.+.+. +||...+.+.... |....++...++..|+|+++++++++++|+++|++|+|+.|++.|++|+ ++
T Consensus 681 v~~~~~~l~Rl~n~~~~~~~~~~-----~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~-~~ 754 (878)
T 2v0c_A 681 VQGAWRFLNRIYRRVAEDREALL-----ETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL-NA 754 (878)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----TCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-----ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HH
Confidence 444445555 4776665544321 0000111224578999999999999999999999999999999999999 57
Q ss_pred hhHH
Q psy961 85 LCDV 88 (118)
Q Consensus 85 ls~~ 88 (118)
++.+
T Consensus 755 l~k~ 758 (878)
T 2v0c_A 755 LYEY 758 (878)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7654
No 16
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=96.22 E-value=0.025 Score=45.18 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHH
Q psy961 42 KVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLE 91 (118)
Q Consensus 42 ~l~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle 91 (118)
.++..|+|++.++.++.+.+.+++++++++.+++.++++. ..++++|-+
T Consensus 368 ~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La-~~~n~fY~~ 416 (464)
T 3fnr_A 368 SLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLA-ANFHKFYNE 416 (464)
T ss_dssp TCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHH-HHHHHHHHH
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHh
Confidence 4555699999999999999999999999999999999997 688988865
No 17
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=78.92 E-value=2.4 Score=33.52 Aligned_cols=38 Identities=8% Similarity=-0.030 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHh-hcCcHHHHHHHHHHHhHHhhhHHHHHh
Q psy961 53 RLADAVATCNKAF-QKYEFNTVTSACYNLWLYELCDVYLEC 92 (118)
Q Consensus 53 ~l~~~~~~v~~~~-e~~~f~~a~~~i~~F~~~~ls~~Yle~ 92 (118)
++..+.+.+.++| ++|+++.|+..|++|+ ..++.|++-
T Consensus 334 ~l~~~~~~~~~am~dd~n~~~Al~~l~~l~--~~~N~~~~~ 372 (461)
T 1li5_A 334 GGEAFEARFIEAMDDDFNTPEAYSVLFDMA--REVNRLKAE 372 (461)
T ss_dssp SCHHHHHHHHHHHHBTSCHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHH--HHHHHHHhc
Confidence 4677888999999 9999999999999998 346788753
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=67.28 E-value=5.6 Score=30.80 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=26.1
Q ss_pred HHHHHHHHHHh-hcCcHHHHHHHHHHHhHHhh
Q psy961 55 ADAVATCNKAF-QKYEFNTVTSACYNLWLYEL 85 (118)
Q Consensus 55 ~~~~~~v~~~~-e~~~f~~a~~~i~~F~~~~l 85 (118)
+++++++.++| ++|+|+.|+..|++|+ +..
T Consensus 358 ~~~~~~v~~a~~d~~~~~~Al~~i~~~~-~~~ 388 (414)
T 3c8z_A 358 TDVIARVRQYLADDLDTPKALAALDGWC-TDA 388 (414)
T ss_dssp HHHHHHHHHHHHBTCCHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHH
Confidence 56788999999 7999999999999998 443
No 19
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=67.04 E-value=22 Score=28.81 Aligned_cols=49 Identities=10% Similarity=0.022 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHHhhc
Q psy961 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIK 94 (118)
Q Consensus 44 ~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle~~K 94 (118)
.+.++=++..+.++-+.+.+++++++++.++..+++.. ..+.++ ++-.+
T Consensus 499 ~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La-~~fn~f-y~~~~ 547 (592)
T 1iq0_A 499 TPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLA-ASWNAY-YNARE 547 (592)
T ss_dssp CHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHH-HHCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHH-HHhcc
Confidence 44566677889999999999999999999999999987 555554 45554
No 20
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=64.73 E-value=52 Score=26.92 Aligned_cols=47 Identities=11% Similarity=0.035 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHH
Q psy961 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLE 91 (118)
Q Consensus 44 ~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle 91 (118)
.+.++=++..+.++-+.+.+++++++.+.++..++++. ..|.++|=+
T Consensus 543 ~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La-~~fn~fy~~ 589 (629)
T 2zue_A 543 SERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELA-SLFNKFYMD 589 (629)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHHHh
Confidence 45666788899999999999999999999999999997 677777744
No 21
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=47.83 E-value=19 Score=22.85 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=18.4
Q ss_pred HHHHHHhHHhhhHHHHHhhccc
Q psy961 75 SACYNLWLYELCDVYLECIKPV 96 (118)
Q Consensus 75 ~~i~~F~~~~ls~~Yle~~K~~ 96 (118)
..|-.|+.|-||+||.+....+
T Consensus 38 MnLAGFCRNCLskWy~~aA~e~ 59 (105)
T 2o35_A 38 MNLAGFCRNCLSNWYREAAEAS 59 (105)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4567899999999999987655
No 22
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=45.07 E-value=20 Score=22.72 Aligned_cols=22 Identities=9% Similarity=-0.052 Sum_probs=18.0
Q ss_pred HHHHHHhHHhhhHHHHHhhccc
Q psy961 75 SACYNLWLYELCDVYLECIKPV 96 (118)
Q Consensus 75 ~~i~~F~~~~ls~~Yle~~K~~ 96 (118)
..|-.|+.|-||+||.+....+
T Consensus 37 MnLAGFCRNCLskWy~~aA~~~ 58 (104)
T 3fyb_A 37 MIQADFCRNCLAKWLMEAATEQ 58 (104)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4557899999999999887655
No 23
>1esx_A VPR protein; helix, amphipatic, turn, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1m8l_A 1vpc_A 1x9v_A
Probab=38.56 E-value=63 Score=20.18 Aligned_cols=37 Identities=16% Similarity=0.403 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q psy961 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNL 80 (118)
Q Consensus 44 ~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F 80 (118)
.|.|.|.+..|.++.+++.+++..--+..+-+.+++-
T Consensus 13 ep~~eW~le~LeELk~EAvrHFpr~~L~~lgq~iye~ 49 (96)
T 1esx_A 13 EPYNDWTLELLEELKNEAVRHFPRIWLHSLGQHIYET 49 (96)
T ss_dssp CSSTHHHHHHHHHHHHHHHHSTTTCSHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5679999999999999999999988888777776664
No 24
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=23.63 E-value=3e+02 Score=22.37 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhHHhhhHHHHH
Q psy961 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLE 91 (118)
Q Consensus 44 ~~~DrWils~l~~~~~~v~~~~e~~~f~~a~~~i~~F~~~~ls~~Yle 91 (118)
.+.++=++..|.++-+.+.++.++++-+.++.-+++.. ..|.++|=+
T Consensus 521 ~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La-~~fn~fY~~ 567 (607)
T 1f7u_A 521 EPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLT-HQVSSCYDV 567 (607)
T ss_dssp SHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHHHh
Confidence 45566688889999999999999999999999999987 688888844
No 25
>3ts9_A Interferon-induced helicase C domain-containing P; helix bundle, fancm helicase, super family 2 helicase, SF2 H DEXD/H helicase; 2.00A {Mus musculus}
Probab=20.68 E-value=1.9e+02 Score=19.11 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=31.5
Q ss_pred cccccccchhhHHHHHHHHHHH-hcCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHH
Q psy961 3 TDRVSAPYTHLTRWYGHVTELK-KKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNK 63 (118)
Q Consensus 3 ~~~~~~~~~~l~~wn~~~f~l~-~~~~~~f~~~~~~~~~~~l~~~DrWils~l~~~~~~v~~ 63 (118)
|-|+..++.+|.-|+.-.-... ...+++ + .+......|+|++..+..-.++...
T Consensus 76 tiRm~DAl~~L~~Fy~~e~~~k~~~~~~~--~-----~~~~~d~ter~L~~lF~e~k~eL~~ 130 (138)
T 3ts9_A 76 TIRMIDAYSHLETFYTDEKEKKFAVLNDS--K-----KSLKLDETDEFLMNLFFDNKKMLKK 130 (138)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCCC-----------CCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccc--c-----cccccChHHHHHHHHHHHHHHHHHH
Confidence 4588888888886544432222 212111 1 1224578999999999876555543
Done!