RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy961
(118 letters)
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 66.8 bits (164), Expect = 2e-14
Identities = 19/81 (23%), Positives = 30/81 (37%)
Query: 32 NAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLE 91
+ QA + + D ++ SRL+ V ++ + Y L E CD YLE
Sbjct: 592 SREGFQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLE 651
Query: 92 CIKPVMADGSLIEKANAARTL 112
KP + G+ L
Sbjct: 652 AAKPALKAGNAHTLRTLEEVL 672
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 45.2 bits (108), Expect = 7e-07
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 29 ADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDV 88
D N D + ++ +D ++L+RL + A+ ++ +++ + N EL +
Sbjct: 660 NDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNF 719
Query: 89 YLECIK 94
YL+ K
Sbjct: 720 YLDYGK 725
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 40.2 bits (95), Expect = 5e-05
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 44 SPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKPVM-ADGSL 102
+D W+L+R+ D + +A + Y+ T A + + +L Y+ + +
Sbjct: 674 PEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDA 733
Query: 103 IEKANAARTL 112
+++ A TL
Sbjct: 734 LDREAAYATL 743
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 38.0 bits (88), Expect = 3e-04
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 4 DRVSAPYTHLTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNK 63
V + R+Y +++ + + V++ ID W+L RL A+
Sbjct: 692 KEVGKLRKQIERFYELISQFAEYEVKG---------NVELKDIDRWMLHRLNKAIKETTN 742
Query: 64 AFQKYEFNTVTSACYNLWLYELCDVYLE 91
A +++ T + + YL
Sbjct: 743 ALEEFRTRTAVQWAFYS-IMNDLRWYLR 769
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 36.5 bits (84), Expect = 0.001
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 3 TDRVSAPYTHLTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCN 62
V + R+Y +++ + + V++ ID W+L RL A+
Sbjct: 691 RKEVGKLRKQIERFYELISQFAEY---------EVKGNVELKDIDRWMLHRLNKAIKETT 741
Query: 63 KAFQKYEFNTVTSACYNLWLYELCDVYLE 91
A +++ T + + YL
Sbjct: 742 NALEEFRTRTAVQWAFYS-IMNDLRWYLR 769
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.041
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 26/107 (24%)
Query: 19 H--VTELKKKQDADVNAALD------QASKVKVSPIDSWILSRLADAVATCNKAFQKY-E 69
H +L ++ D + + A + P D S L AV Q
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE--GNAQLVAI 159
Query: 70 F----NTVTSACYNLWLYELCDVYLECIKPVMADGSLIEKANAARTL 112
F NT + + EL D+Y + ++ D LI+ +A TL
Sbjct: 160 FGGQGNT------DDYFEELRDLY-QTYHVLVGD--LIK--FSAETL 195
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.50
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 25/114 (21%)
Query: 19 HVTELKKKQDADVNAALDQASKV-KVSPIDSWILS--------RLADAVATCNKAFQKYE 69
V E + D D + ID I+S RL + +K + +
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL--LSKQEEMVQ 80
Query: 70 --FNTVTSACYNLWLYE-----------LCDVYLECIKPVMADGSLIEKANAAR 110
V Y +L + +Y+E + D + K N +R
Sbjct: 81 KFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
>2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein
biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear
protein, RNA-binding protein; HET: MSE; 2.0A {Homo
sapiens}
Length = 174
Score = 26.2 bits (58), Expect = 2.3
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 1 MLTDRVSAPYTHLTRWYGHVTEL 23
LT + Y +++RW+ H+
Sbjct: 130 DLTVQEKEKYLNVSRWFCHIQHY 152
>2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A
{Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A
Length = 209
Score = 25.9 bits (56), Expect = 3.4
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 7 SAPYTHLTRWYGHVTELKKKQDADVNAALDQASKVKVSP 45
+ +++RWY + + D A D SK +
Sbjct: 158 NKVDVNVSRWYTLL-----EMDPIFGEAHDFLSKSLLEL 191
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 25.0 bits (54), Expect = 7.4
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 16 WYGHVTELKKKQDADVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTS 75
W L+ + + L+Q ++ S ++++ L D + N
Sbjct: 277 WNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDI---YEDMLENQCDNKEDI 333
Query: 76 ACYNLWLYEL 85
L L E+
Sbjct: 334 LNKALELCEI 343
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.130 0.396
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,745,388
Number of extensions: 86883
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 16
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)