RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy961
         (118 letters)



>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS)
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 273

 Score = 43.1 bits (100), Expect = 1e-06
 Identities = 14/72 (19%), Positives = 33/72 (45%)

Query: 30  DVNAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVY 89
           D N   D   + ++  +D ++L+RL +  A+    ++ +++  +     N    EL + Y
Sbjct: 17  DFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY 76

Query: 90  LECIKPVMADGS 101
           L+  K ++    
Sbjct: 77  LDYGKDILYIEQ 88


>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS)
          {Thermus thermophilus [TaxId: 274]}
          Length = 218

 Score = 32.7 bits (73), Expect = 0.005
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 32 NAALDQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLE 91
          +    QA +   +  D ++ SRL+  V      ++  +        Y L   E CD YLE
Sbjct: 14 SREGFQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLE 73

Query: 92 CIKPVM 97
            KP +
Sbjct: 74 AAKPAL 79


>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS)
          {Thermus thermophilus [TaxId: 274]}
          Length = 128

 Score = 29.9 bits (66), Expect = 0.045
 Identities = 8/62 (12%), Positives = 17/62 (27%)

Query: 36 DQASKVKVSPIDSWILSRLADAVATCNKAFQKYEFNTVTSACYNLWLYELCDVYLECIKP 95
                 +   D  +  +L + +    +  +   FNT  +A                + P
Sbjct: 21 GVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTP 80

Query: 96 VM 97
          V 
Sbjct: 81 VY 82


>d1r7ma1 d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 118

 Score = 27.1 bits (60), Expect = 0.36
 Identities = 4/24 (16%), Positives = 6/24 (25%), Gaps = 1/24 (4%)

Query: 62  NKAFQKYEFNTVTSACYNLWLYEL 85
                 +   T     +N  L  L
Sbjct: 91  GNLVITWGAQTFKHQAFN-KLANL 113


>d1jlwa1 a.45.1.1 (A:91-217) Class delta GST {Mosquito (Anopheles
           dirus b), isozyme 1-4 [TaxId: 123217]}
          Length = 127

 Score = 24.6 bits (53), Expect = 2.3
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 8   APYTHLTRWYGHVTELKKKQDADVNAA 34
             Y ++ RWY   + +    D +V  A
Sbjct: 93  RRYENVQRWYERTSAIVPGADKNVEGA 119


>d1irha_ g.8.1.1 (A:) Tissue factor pathway inhibitor {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 61

 Score = 23.3 bits (50), Expect = 4.7
 Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 1/28 (3%)

Query: 60 TCNKAFQKYEFNTVTSACYNLWLYELCD 87
           C     ++ +N+V   C     Y  C 
Sbjct: 16 LCRANENRFYYNSVIGKCRPFK-YSGCG 42


>d1ktha_ g.8.1.1 (A:) Collagen type VI (domain C5 from alpha 3
          chain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 22.9 bits (49), Expect = 5.0
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 60 TCNKAFQKYEFNTVTSACYNLW 81
          TC     K+ ++  T +C   W
Sbjct: 13 TCRDFILKWYYDPNTKSCARFW 34


>d1tfxc_ g.8.1.1 (C:) Tissue factor pathway inhibitor {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 58

 Score = 22.5 bits (48), Expect = 6.6
 Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 1/28 (3%)

Query: 60 TCNKAFQKYEFNTVTSACYNLWLYELCD 87
           C     +Y +N  T  C     Y  C 
Sbjct: 13 ICRGYITRYFYNNQTKQCERFK-YGGCL 39


>d1zr0b1 g.8.1.1 (B:1A-59) Tissue factor pathway inhibitor {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 22.6 bits (48), Expect = 6.7
 Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 60 TCNKAFQKYEFNTVTSACYNLWLYELCD 87
           C     +Y ++  T +C     Y  C+
Sbjct: 17 PCRALLLRYYYDRYTQSCRQFL-YGGCE 43


>d1g6xa_ g.8.1.1 (A:) Pancreatic trypsin inhibitor, BPTI {Cow (Bos
          taurus) [TaxId: 9913]}
          Length = 58

 Score = 22.5 bits (48), Expect = 7.9
 Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 1/28 (3%)

Query: 60 TCNKAFQKYEFNTVTSACYNLWLYELCD 87
           C     +Y +N     C     Y  C 
Sbjct: 13 ACRARIIRYFYNAKAGLCQTFV-YGGCR 39


>d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli
          [TaxId: 562]}
          Length = 416

 Score = 23.6 bits (51), Expect = 8.0
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 11 THLTRWYGHVTELKKKQDADVNAALDQASKVKVSPIDSW 49
          T L + +    +       DV  AL Q  ++ VS +  W
Sbjct: 1  TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVS-MHCW 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.130    0.396 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 422,329
Number of extensions: 16541
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 18
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)