BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9614
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/49 (79%), Positives = 43/49 (87%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA RLDL+EARVQV
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQV 374
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/49 (79%), Positives = 43/49 (87%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA RLDL+EARVQV
Sbjct: 330 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQV 378
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/49 (79%), Positives = 43/49 (87%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA RLDL+EARVQV
Sbjct: 328 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQV 376
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/49 (79%), Positives = 43/49 (87%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA RLDL+EARVQV
Sbjct: 213 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQV 261
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 43/49 (87%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RR RTTFT+YQL +LERAF KT YPDVFTRE+LA R+DL+EARVQV
Sbjct: 210 RKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEARVQV 258
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 45/49 (91%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA++++L E RVQV
Sbjct: 135 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQV 183
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 49/60 (81%), Gaps = 3/60 (5%)
Query: 7 PPGSANK---PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
PP +A + +K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQV
Sbjct: 23 PPAAAEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 82
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 44/49 (89%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQV
Sbjct: 128 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 176
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
Query: 9 GSANKPRKI-RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
G +P+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQV
Sbjct: 133 GDEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 188
>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica GN=RAX
PE=2 SV=1
Length = 268
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 46/57 (80%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
P +N +K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA ++ L E RVQV
Sbjct: 77 PDQLSNCNKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKISLPEVRVQV 133
>sp|A2T711|RAX2_PANTR Retina and anterior neural fold homeobox protein 2 OS=Pan
troglodytes GN=RAX2 PE=3 SV=1
Length = 184
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+K RR+RTTFTTYQLHQLERAF+ + YPDV++RE+LA+++ L E RVQV
Sbjct: 25 KKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQV 73
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 44/49 (89%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQV
Sbjct: 128 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 176
>sp|A1YG25|RAX2_PANPA Retina and anterior neural fold homeobox protein 2 OS=Pan
paniscus GN=RAX2 PE=3 SV=1
Length = 184
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+K RR+RTTFTTYQLHQLERAF+ + YPDV++RE+LA+++ L E RVQV
Sbjct: 25 KKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQV 73
>sp|Q96IS3|RAX2_HUMAN Retina and anterior neural fold homeobox protein 2 OS=Homo
sapiens GN=RAX2 PE=1 SV=1
Length = 184
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+K RR+RTTFTTYQLHQLERAF+ + YPDV++RE+LA+++ L E RVQV
Sbjct: 25 KKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQV 73
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 44/49 (89%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQV
Sbjct: 135 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 183
>sp|A1YEV8|RAX2_GORGO Retina and anterior neural fold homeobox protein 2 OS=Gorilla
gorilla gorilla GN=RAX2 PE=3 SV=1
Length = 184
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+K RR+RTTFTTYQLHQLERAF+ + YPDV++RE+LA+++ L E RVQV
Sbjct: 25 KKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQV 73
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 44/49 (89%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQV
Sbjct: 133 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 181
>sp|Q7YRX0|RAX2_BOVIN Retina and anterior neural fold homeobox protein 2 OS=Bos taurus
GN=RAX2 PE=2 SV=1
Length = 184
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+K RR+RTTFTTYQLHQLERAF+ + YPDV++RE+LA+++ L E RVQV
Sbjct: 25 KKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQV 73
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/74 (50%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 8 PGSANKPRKI-RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSD 66
P +P+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQV
Sbjct: 112 PSDEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQ 171
Query: 67 SQIPTLGSNEKVQI 80
++ EK+++
Sbjct: 172 NRRAKWRRQEKLEV 185
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 45/52 (86%)
Query: 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
N +K RR+RTTFTT+QLH+LERAF+K+ YPDV++RE+LA +++L E RVQV
Sbjct: 101 NPKKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQV 152
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/49 (67%), Positives = 44/49 (89%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQV
Sbjct: 526 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 574
>sp|Q26602|SMOX3_SCHMA Homeobox protein SMOX-3 (Fragment) OS=Schistosoma mansoni
GN=SMOX-3 PE=2 SV=1
Length = 288
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 42/49 (85%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RR RTTFT+ QL +LERAF +T YPD++TREDLA R+DL+EARVQV
Sbjct: 2 RKQRRIRTTFTSLQLKELERAFQETHYPDIYTREDLALRIDLTEARVQV 50
>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
SV=1
Length = 613
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
Query: 8 PGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
PG A K RK RR RTTF+ QL +LERAF++TQYPD++TRE+LA R +L+EAR+QV
Sbjct: 205 PGIALK-RKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQV 259
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 51/66 (77%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQV ++
Sbjct: 134 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRR 193
Query: 75 NEKVQI 80
EK+++
Sbjct: 194 QEKLEV 199
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 51/66 (77%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQV ++
Sbjct: 135 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRR 194
Query: 75 NEKVQI 80
EK+++
Sbjct: 195 QEKLEV 200
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 51/66 (77%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74
+K RR+RTTFTTYQLH+LERAF+K+ YPDV++RE+LA +++L E RVQV ++
Sbjct: 134 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRR 193
Query: 75 NEKVQI 80
EK+++
Sbjct: 194 QEKLEV 199
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RRSRTTFT QL +LERAF++T YPD++TRE+LA R L+EARVQV
Sbjct: 194 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 242
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RRSRTTFT QL +LERAF++T YPD++TRE+LA R L+EARVQV
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 265
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RRSRTTFT QL +LERAF++T YPD++TRE+LA R L+EARVQV
Sbjct: 218 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 266
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RRSRTTFT QL +LERAF++T YPD++TRE+LA R L+EARVQV
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 265
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RRSRTTFT QL +LERAF++T YPD++TRE+LA R L+EARVQV
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV 265
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 44/55 (80%)
Query: 9 GSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
G N+ RK RR RTTFT+ QL +LER F +T YPD++TRE+LA ++DL+EARVQV
Sbjct: 90 GGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQV 144
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 44/55 (80%)
Query: 9 GSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
G N+ RK RR RTTFT+ QL +LER F +T YPD++TRE+LA ++DL+EARVQV
Sbjct: 90 GGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQV 144
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
Query: 11 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+NK +K RR+RTTFT+YQL +LE+ F KT YPDV+ RE LA R DL+EARVQV
Sbjct: 197 SNKGKK-RRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQV 248
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 3 FYFFP-PGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 61
+ FFP P ++ RK RR RTTFT+ QL +LER F +T YPD++TRE+LA ++DL+EARV
Sbjct: 75 YKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARV 134
Query: 62 QV 63
QV
Sbjct: 135 QV 136
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 3 FYFFP-PGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 61
+ FFP P ++ RK RR RTTFT+ QL +LER F +T YPD++TRE+LA ++DL+EARV
Sbjct: 75 YKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARV 134
Query: 62 QV 63
QV
Sbjct: 135 QV 136
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
Query: 11 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+NK +K RR+RTTFT+YQL +LE+ F KT YPDV+ RE LA R DL+EARVQV
Sbjct: 195 SNKGKK-RRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQV 246
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 42/49 (85%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RR RTTFT++QL +LE+AF +T YPDVFTRE+LA ++ L+EAR+QV
Sbjct: 83 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV 131
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 3 FYFFP-PGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 61
+ FFP P ++ RK RR RTTFT+ QL +LER F +T YPD++TRE+LA ++DL+EARV
Sbjct: 75 YKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARV 134
Query: 62 QV 63
QV
Sbjct: 135 QV 136
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
Query: 11 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+NK +K RR+RTTFT+YQL +LE+ F KT YPDV+ RE LA R DL+EARVQV
Sbjct: 209 SNKGKK-RRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQV 260
>sp|Q94398|HM08_CAEEL Homeobox protein ceh-8 OS=Caenorhabditis elegans GN=ceh-8 PE=4 SV=3
Length = 276
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+K RR+RTTFTT+QLH LE AFDKT YPDV+ RE LA+++ L E RVQV
Sbjct: 58 KKQRRNRTTFTTFQLHALEAAFDKTHYPDVYARETLAAKVQLPEVRVQV 106
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 41/49 (83%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RRSRTTFT QL +LE+AF++T YPD++TRE+LA R L+EARVQV
Sbjct: 215 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQV 263
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 41/49 (83%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RRSRTTFT QL +LE+AF++T YPD++TRE+LA R L+EARVQV
Sbjct: 213 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQV 261
>sp|P09083|GSBN_DROME Protein gooseberry-neuro OS=Drosophila melanogaster GN=gsb-n PE=1
SV=2
Length = 449
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/49 (69%), Positives = 39/49 (79%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RRSRTTFT QL LERAF +TQYPDV+TRE+LA L+EAR+QV
Sbjct: 180 RKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQV 228
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/54 (62%), Positives = 43/54 (79%), Gaps = 1/54 (1%)
Query: 10 SANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ NK +K RR+RTTF+T+QL +LE+ F KT YPDV+ RE LA R DL+EARVQV
Sbjct: 147 AKNKSKK-RRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQV 199
>sp|O15266|SHOX_HUMAN Short stature homeobox protein OS=Homo sapiens GN=SHOX PE=1 SV=1
Length = 292
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 38/48 (79%)
Query: 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
K RRSRT FT QL++LER FD+T YPD F RE+L+ RL LSEARVQV
Sbjct: 116 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQV 163
>sp|O60902|SHOX2_HUMAN Short stature homeobox protein 2 OS=Homo sapiens GN=SHOX2 PE=2 SV=4
Length = 331
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 38/48 (79%)
Query: 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
K RRSRT FT QL++LER FD+T YPD F RE+L+ RL LSEARVQV
Sbjct: 139 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQV 186
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 40/53 (75%)
Query: 11 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
A K RR+RTTF+T+QL +LE+ F KT YPDV+ RE LA R DL+EARVQV
Sbjct: 147 AKTKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQV 199
>sp|P70390|SHOX2_MOUSE Short stature homeobox protein 2 OS=Mus musculus GN=Shox2 PE=2 SV=1
Length = 331
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 38/48 (79%)
Query: 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
K RRSRT FT QL++LER FD+T YPD F RE+L+ RL LSEARVQV
Sbjct: 139 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQV 186
>sp|O35750|SHOX2_RAT Short stature homeobox protein 2 (Fragment) OS=Rattus norvegicus
GN=Shox2 PE=2 SV=2
Length = 237
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 38/48 (79%)
Query: 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
K RRSRT FT QL++LER FD+T YPD F RE+L+ RL LSEARVQV
Sbjct: 45 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQV 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,477,954
Number of Sequences: 539616
Number of extensions: 1079891
Number of successful extensions: 3752
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2938
Number of HSP's gapped (non-prelim): 822
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)