Query psy9614
Match_columns 103
No_of_seqs 180 out of 1005
Neff 8.1
Searched_HMMs 29240
Date Sat Aug 17 00:16:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dms_A Homeobox protein OTX2; 99.9 4.3E-24 1.5E-28 126.9 4.8 72 12-83 2-73 (80)
2 2cra_A Homeobox protein HOX-B1 99.9 5.6E-24 1.9E-28 123.5 4.5 66 12-77 2-67 (70)
3 2da2_A Alpha-fetoprotein enhan 99.9 8.3E-24 2.8E-28 122.7 4.3 67 12-78 2-68 (70)
4 2kt0_A Nanog, homeobox protein 99.9 1.4E-23 4.7E-28 125.7 5.3 68 11-78 16-83 (84)
5 1nk2_P Homeobox protein VND; h 99.9 4.8E-24 1.6E-28 125.9 3.3 71 10-80 2-72 (77)
6 2dmt_A Homeobox protein BARH-l 99.9 1.2E-23 4.1E-28 125.0 4.7 67 11-77 11-77 (80)
7 2dmq_A LIM/homeobox protein LH 99.9 9.2E-24 3.2E-28 125.4 3.7 69 13-81 3-71 (80)
8 2djn_A Homeobox protein DLX-5; 99.9 1.4E-23 4.8E-28 121.8 4.2 66 12-77 2-67 (70)
9 2cue_A Paired box protein PAX6 99.9 5.5E-24 1.9E-28 126.5 2.3 68 13-80 3-70 (80)
10 2da1_A Alpha-fetoprotein enhan 99.9 7.5E-24 2.6E-28 122.9 2.7 67 12-78 2-68 (70)
11 2dmu_A Homeobox protein goosec 99.9 1.3E-23 4.5E-28 121.9 3.3 65 13-77 3-67 (70)
12 3a01_A Homeodomain-containing 99.9 2E-23 7E-28 127.3 3.8 75 4-78 4-78 (93)
13 1wh5_A ZF-HD homeobox family p 99.9 6.4E-23 2.2E-27 122.0 5.7 63 13-75 13-79 (80)
14 1puf_A HOX-1.7, homeobox prote 99.9 1.6E-23 5.4E-28 123.7 2.7 73 6-78 2-74 (77)
15 2vi6_A Homeobox protein nanog; 99.9 1.6E-23 5.6E-28 118.9 2.6 61 16-76 2-62 (62)
16 2da3_A Alpha-fetoprotein enhan 99.9 2.2E-23 7.5E-28 123.7 2.9 67 11-77 11-77 (80)
17 1wh7_A ZF-HD homeobox family p 99.9 1.1E-22 3.9E-27 120.9 5.9 63 12-75 12-79 (80)
18 2l7z_A Homeobox protein HOX-A1 99.9 5.3E-23 1.8E-27 120.3 4.2 66 14-79 4-69 (73)
19 2m0c_A Homeobox protein arista 99.9 5.9E-23 2E-27 120.4 4.1 68 12-79 4-71 (75)
20 2r5y_A Homeotic protein sex co 99.9 2.4E-23 8.1E-28 125.8 2.4 65 12-76 23-87 (88)
21 2e1o_A Homeobox protein PRH; D 99.9 4.6E-23 1.6E-27 119.6 3.3 64 14-77 4-67 (70)
22 1ahd_P Antennapedia protein mu 99.9 2.7E-23 9.2E-28 120.1 1.5 65 17-81 2-66 (68)
23 2h1k_A IPF-1, pancreatic and d 99.9 3.3E-23 1.1E-27 118.0 1.7 61 16-76 2-62 (63)
24 1bw5_A ISL-1HD, insulin gene e 99.9 7.5E-23 2.6E-27 117.5 3.2 62 16-77 2-63 (66)
25 2da4_A Hypothetical protein DK 99.9 3.3E-23 1.1E-27 123.1 1.2 66 12-77 3-72 (80)
26 2da5_A Zinc fingers and homeob 99.9 1.9E-22 6.6E-27 118.5 4.5 63 18-80 8-70 (75)
27 2hdd_A Protein (engrailed home 99.9 5.3E-23 1.8E-27 116.4 1.8 58 17-74 3-60 (61)
28 1b8i_A Ultrabithorax, protein 99.9 8.2E-23 2.8E-27 121.7 2.6 65 13-77 16-80 (81)
29 2dn0_A Zinc fingers and homeob 99.9 2.5E-22 8.7E-27 118.2 4.3 65 17-81 8-72 (76)
30 1zq3_P PRD-4, homeotic bicoid 99.9 6.5E-23 2.2E-27 118.4 1.6 63 17-79 2-64 (68)
31 1ig7_A Homeotic protein MSX-1; 99.9 1E-22 3.5E-27 114.1 2.3 57 18-74 1-57 (58)
32 1yz8_P Pituitary homeobox 2; D 99.9 3.7E-23 1.3E-27 119.5 0.1 64 16-79 2-65 (68)
33 1fjl_A Paired protein; DNA-bin 99.9 7.6E-23 2.6E-27 121.8 1.4 65 13-77 14-78 (81)
34 1ftt_A TTF-1 HD, thyroid trans 99.9 1.6E-22 5.5E-27 116.8 2.5 63 17-79 2-64 (68)
35 1jgg_A Segmentation protein EV 99.8 1.7E-22 5.7E-27 114.0 2.0 58 18-75 2-59 (60)
36 2cuf_A FLJ21616 protein; homeo 99.8 2.5E-22 8.5E-27 122.8 2.5 70 12-81 2-86 (95)
37 1b72_A Protein (homeobox prote 99.8 1.3E-22 4.3E-27 124.6 1.1 66 13-78 30-95 (97)
38 3a02_A Homeobox protein arista 99.8 1.9E-22 6.5E-27 113.8 1.7 58 20-77 2-59 (60)
39 2k40_A Homeobox expressed in E 99.8 2.9E-22 1E-26 115.3 2.4 61 18-78 2-62 (67)
40 2ecb_A Zinc fingers and homeob 99.8 1.5E-21 5E-26 118.2 5.0 59 23-81 17-75 (89)
41 1akh_A Protein (mating-type pr 99.8 2.9E-22 9.8E-27 113.3 1.8 59 15-73 3-61 (61)
42 1uhs_A HOP, homeodomain only p 99.8 3.9E-22 1.3E-26 116.3 2.3 63 18-80 2-65 (72)
43 3rkq_A Homeobox protein NKX-2. 99.8 4.6E-22 1.6E-26 111.2 2.5 57 17-73 2-58 (58)
44 2ly9_A Zinc fingers and homeob 99.8 1.2E-21 4.2E-26 114.6 4.4 65 16-80 5-69 (74)
45 2hi3_A Homeodomain-only protei 99.8 4.8E-22 1.6E-26 116.2 2.6 63 18-80 3-66 (73)
46 2ecc_A Homeobox and leucine zi 99.8 8.3E-22 2.8E-26 115.9 3.4 61 19-79 5-65 (76)
47 3nar_A ZHX1, zinc fingers and 99.8 8.8E-22 3E-26 120.6 2.6 66 12-77 20-85 (96)
48 1wi3_A DNA-binding protein SAT 99.8 1.8E-21 6.2E-26 111.4 3.6 62 12-73 2-64 (71)
49 1x2n_A Homeobox protein pknox1 99.8 1.7E-21 5.9E-26 113.8 3.3 66 12-77 2-70 (73)
50 3a03_A T-cell leukemia homeobo 99.8 6.9E-22 2.4E-26 110.1 1.0 54 22-75 2-55 (56)
51 1du6_A PBX1, homeobox protein 99.8 3.2E-21 1.1E-25 109.9 2.8 59 17-75 3-64 (64)
52 2dmp_A Zinc fingers and homeob 99.8 1.6E-20 5.4E-25 113.7 4.9 61 21-81 17-77 (89)
53 1b72_B Protein (PBX1); homeodo 99.8 1.7E-21 5.7E-26 117.3 0.5 63 18-80 2-67 (87)
54 2dmn_A Homeobox protein TGIF2L 99.8 1.2E-20 4E-25 112.9 4.0 67 13-79 3-72 (83)
55 2da6_A Hepatocyte nuclear fact 99.8 5.3E-21 1.8E-25 118.0 2.5 68 13-80 2-90 (102)
56 1au7_A Protein PIT-1, GHF-1; c 99.8 6E-21 2E-25 124.9 2.8 64 12-75 82-145 (146)
57 1puf_B PRE-B-cell leukemia tra 99.8 6.3E-21 2.2E-25 111.4 2.4 62 18-79 2-66 (73)
58 2xsd_C POU domain, class 3, tr 99.8 9.1E-21 3.1E-25 126.1 2.0 66 14-79 96-161 (164)
59 1lfb_A Liver transcription fac 99.8 1.3E-20 4.4E-25 116.1 2.5 67 13-79 5-92 (99)
60 3d1n_I POU domain, class 6, tr 99.8 2E-20 6.9E-25 122.8 3.4 63 12-74 88-150 (151)
61 2l9r_A Homeobox protein NKX-3. 99.8 2.2E-20 7.7E-25 108.1 3.1 57 22-78 9-65 (69)
62 1e3o_C Octamer-binding transcr 99.8 1.6E-20 5.5E-25 124.4 2.5 62 14-75 98-159 (160)
63 1k61_A Mating-type protein alp 99.8 1.7E-20 5.7E-25 105.7 2.2 55 21-75 2-59 (60)
64 2cqx_A LAG1 longevity assuranc 99.8 6.7E-21 2.3E-25 111.2 0.0 59 18-76 9-68 (72)
65 1le8_B Mating-type protein alp 99.8 4.1E-20 1.4E-24 110.5 2.8 61 18-78 3-66 (83)
66 1mnm_C Protein (MAT alpha-2 tr 99.8 5.8E-20 2E-24 110.6 2.9 60 15-74 25-87 (87)
67 2d5v_A Hepatocyte nuclear fact 99.8 7.6E-20 2.6E-24 121.4 2.8 68 13-80 93-160 (164)
68 2e19_A Transcription factor 8; 99.8 1.1E-19 3.9E-24 103.7 2.6 54 22-75 8-61 (64)
69 1x2m_A LAG1 longevity assuranc 99.8 1.1E-19 3.8E-24 103.6 2.4 50 27-76 10-60 (64)
70 3nau_A Zinc fingers and homeob 99.8 4.7E-20 1.6E-24 105.4 0.8 51 25-75 12-62 (66)
71 3l1p_A POU domain, class 5, tr 99.8 1E-19 3.4E-24 120.0 2.1 61 15-75 94-154 (155)
72 3k2a_A Homeobox protein MEIS2; 99.7 5.9E-18 2E-22 97.3 1.5 56 23-78 4-62 (67)
73 1ic8_A Hepatocyte nuclear fact 99.7 7.6E-18 2.6E-22 114.6 -0.2 62 13-74 111-193 (194)
74 2h8r_A Hepatocyte nuclear fact 99.6 1.5E-16 5.2E-21 109.7 2.6 62 11-72 136-218 (221)
75 2da7_A Zinc finger homeobox pr 99.6 4.4E-16 1.5E-20 89.5 1.7 46 26-71 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.5 2.6E-15 8.8E-20 90.4 1.0 57 22-78 10-69 (89)
77 1mh3_A Maltose binding-A1 home 99.5 8.5E-15 2.9E-19 107.1 2.0 55 19-73 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.9 6.3E-11 2.1E-15 60.1 -0.5 21 59-79 1-21 (37)
79 2ys9_A Homeobox and leucine zi 96.3 0.0045 1.5E-07 35.1 3.5 42 27-68 16-57 (70)
80 2glo_A Brinker CG9653-PA; prot 86.1 0.46 1.6E-05 25.1 2.1 45 21-66 3-47 (59)
81 2elh_A CG11849-PA, LD40883P; s 83.0 1.2 4E-05 25.4 3.0 44 18-66 17-60 (87)
82 1hlv_A CENP-B, major centromer 78.1 1.5 5.3E-05 26.4 2.6 48 20-70 4-51 (131)
83 2rgt_A Fusion of LIM/homeobox 77.7 0.015 5.1E-07 37.8 -7.2 30 15-44 134-163 (169)
84 1jko_C HIN recombinase, DNA-in 74.1 2 6.8E-05 21.0 2.0 41 24-69 6-46 (52)
85 1tc3_C Protein (TC3 transposas 72.9 2.7 9.3E-05 20.1 2.3 40 23-67 5-44 (51)
86 2jn6_A Protein CGL2762, transp 64.4 5.2 0.00018 22.8 2.6 42 21-66 3-45 (97)
87 3hug_A RNA polymerase sigma fa 60.0 1.4 4.7E-05 25.2 -0.6 46 24-74 38-83 (92)
88 2o8x_A Probable RNA polymerase 58.0 1.8 6.1E-05 22.9 -0.3 47 23-74 15-61 (70)
89 2kvr_A Ubiquitin carboxyl-term 57.8 6 0.00021 24.5 2.1 24 47-70 72-95 (130)
90 1iuf_A Centromere ABP1 protein 55.1 13 0.00045 22.9 3.4 51 18-68 6-60 (144)
91 2rn7_A IS629 ORFA; helix, all 53.7 11 0.00037 21.8 2.7 46 21-66 4-52 (108)
92 2p7v_B Sigma-70, RNA polymeras 53.0 5 0.00017 21.3 1.0 52 23-75 5-56 (68)
93 3fiw_A Putative TETR-family tr 50.1 5 0.00017 26.1 0.8 54 16-70 17-71 (211)
94 1ku3_A Sigma factor SIGA; heli 48.9 8.3 0.00028 20.7 1.5 50 23-73 10-59 (73)
95 2qko_A Possible transcriptiona 46.7 6.7 0.00023 24.8 1.0 40 30-70 35-74 (215)
96 2g7l_A TETR-family transcripti 46.4 8 0.00027 25.8 1.4 52 18-70 13-65 (243)
97 3i5g_B Myosin regulatory light 45.7 49 0.0017 20.1 5.6 39 20-58 6-49 (153)
98 1je8_A Nitrate/nitrite respons 45.6 6.2 0.00021 22.0 0.6 50 19-74 17-66 (82)
99 2hxi_A Putative transcriptiona 45.1 8.7 0.0003 25.5 1.4 51 19-70 24-75 (241)
100 1s7o_A Hypothetical UPF0122 pr 45.0 3.7 0.00013 24.6 -0.4 47 23-74 22-68 (113)
101 3c57_A Two component transcrip 44.4 8 0.00027 22.1 1.0 48 22-75 26-73 (95)
102 1u78_A TC3 transposase, transp 44.2 13 0.00044 22.1 2.1 42 22-68 5-46 (141)
103 2x48_A CAG38821; archeal virus 43.0 9.9 0.00034 19.0 1.2 36 26-66 18-53 (55)
104 1tty_A Sigma-A, RNA polymerase 42.7 5.5 0.00019 22.4 0.1 51 23-74 18-68 (87)
105 3mzy_A RNA polymerase sigma-H 40.3 4.2 0.00014 24.7 -0.7 45 24-74 110-154 (164)
106 1p4w_A RCSB; solution structur 38.8 24 0.00083 20.4 2.6 45 21-71 32-76 (99)
107 1fse_A GERE; helix-turn-helix 38.0 9.7 0.00033 20.1 0.7 47 21-73 9-55 (74)
108 2q24_A Putative TETR family tr 37.6 9.6 0.00033 23.6 0.7 39 29-69 21-59 (194)
109 2pmy_A RAS and EF-hand domain- 37.6 9.7 0.00033 21.0 0.6 47 20-66 17-68 (91)
110 1x3u_A Transcriptional regulat 37.5 7.7 0.00026 20.9 0.2 45 24-74 17-61 (79)
111 2hxo_A Putative TETR-family tr 37.1 27 0.00092 22.9 2.9 50 19-69 11-61 (237)
112 2xi8_A Putative transcription 36.6 6.9 0.00024 19.9 -0.1 23 47-69 17-39 (66)
113 1xsv_A Hypothetical UPF0122 pr 36.1 6.2 0.00021 23.5 -0.4 47 23-74 25-71 (113)
114 1rzs_A Antirepressor, regulato 36.1 8.3 0.00029 20.2 0.2 19 47-65 13-31 (61)
115 2r1j_L Repressor protein C2; p 35.1 7.6 0.00026 19.9 -0.1 23 47-69 21-43 (68)
116 1pdn_C Protein (PRD paired); p 34.9 18 0.00061 20.8 1.6 40 23-67 17-56 (128)
117 2qwt_A Transcriptional regulat 34.0 14 0.00048 23.0 1.0 38 30-69 20-57 (196)
118 3o48_A Mitochondria fission 1 33.5 62 0.0021 20.2 3.9 33 22-54 16-50 (134)
119 1l0o_C Sigma factor; bergerat 33.3 8.9 0.00031 24.7 0.0 27 44-70 214-240 (243)
120 1zug_A Phage 434 CRO protein; 33.2 8.6 0.00029 19.9 -0.1 24 47-70 19-42 (71)
121 2lfw_A PHYR sigma-like domain; 33.1 6.2 0.00021 24.5 -0.8 50 23-77 93-142 (157)
122 2k27_A Paired box protein PAX- 32.5 74 0.0025 19.3 4.3 42 22-68 24-65 (159)
123 3omt_A Uncharacterized protein 32.1 11 0.00037 19.9 0.2 23 47-69 24-46 (73)
124 3bs3_A Putative DNA-binding pr 32.1 9.4 0.00032 20.1 -0.0 23 47-69 26-48 (76)
125 2rnj_A Response regulator prot 31.9 7.2 0.00025 22.0 -0.6 47 22-74 28-74 (91)
126 1or7_A Sigma-24, RNA polymeras 31.4 8.7 0.0003 24.1 -0.3 29 46-74 158-186 (194)
127 1rp3_A RNA polymerase sigma fa 31.2 8.7 0.0003 24.8 -0.3 45 24-73 188-232 (239)
128 3bd1_A CRO protein; transcript 30.9 7 0.00024 21.2 -0.7 23 47-69 14-36 (79)
129 1j9i_A GPNU1 DBD;, terminase s 30.1 13 0.00045 19.8 0.3 23 47-69 5-27 (68)
130 1adr_A P22 C2 repressor; trans 29.8 11 0.00036 19.8 -0.1 24 47-70 21-44 (76)
131 2b5a_A C.BCLI; helix-turn-heli 29.7 11 0.00037 19.9 -0.0 23 47-69 26-48 (77)
132 1k78_A Paired box protein PAX5 29.6 25 0.00087 21.2 1.7 41 22-67 31-71 (149)
133 3dcf_A Transcriptional regulat 29.3 11 0.00037 23.6 -0.1 39 30-69 38-76 (218)
134 1r69_A Repressor protein CI; g 29.1 11 0.00038 19.3 -0.1 24 47-70 17-40 (69)
135 2jml_A DNA binding domain/tran 29.1 11 0.00039 20.8 -0.0 20 47-66 8-27 (81)
136 2hin_A GP39, repressor protein 27.6 11 0.00038 20.8 -0.2 22 47-68 13-34 (71)
137 3ulq_B Transcriptional regulat 27.4 48 0.0016 18.6 2.5 44 19-68 25-68 (90)
138 3b7h_A Prophage LP1 protein 11 27.3 13 0.00044 19.6 -0.0 23 47-69 23-45 (78)
139 3ccy_A Putative TETR-family tr 27.0 56 0.0019 20.1 3.0 40 29-69 20-59 (203)
140 2kpj_A SOS-response transcript 26.6 13 0.00046 20.7 -0.0 24 47-70 25-48 (94)
141 3him_A Probable transcriptiona 25.8 51 0.0017 20.1 2.7 40 29-69 22-61 (211)
142 3g1o_A Transcriptional regulat 25.8 23 0.0008 23.0 1.0 40 30-70 50-89 (255)
143 1fi6_A EH domain protein REPS1 24.8 32 0.0011 19.0 1.4 43 23-65 2-49 (92)
144 3qqa_A CMER; alpha-helical, he 24.7 63 0.0022 19.8 3.0 38 31-69 27-64 (216)
145 3q0w_A HTH-type transcriptiona 24.6 16 0.00053 23.5 -0.0 39 31-70 52-90 (236)
146 8tfv_A Protein (thanatin); bac 23.9 22 0.00074 14.7 0.4 14 58-71 3-16 (21)
147 2a6c_A Helix-turn-helix motif; 23.6 16 0.00054 20.0 -0.1 23 47-69 34-56 (83)
148 2lhi_A Calmodulin, serine/thre 23.5 63 0.0022 20.0 2.8 38 21-58 2-44 (176)
149 1c07_A Protein (epidermal grow 23.5 41 0.0014 18.7 1.7 42 24-65 4-50 (95)
150 3clo_A Transcriptional regulat 23.4 27 0.00092 23.4 1.0 48 22-75 196-243 (258)
151 2rek_A Putative TETR-family tr 23.2 15 0.0005 22.8 -0.3 39 29-69 22-60 (199)
152 3fmy_A HTH-type transcriptiona 23.2 24 0.00083 18.7 0.6 41 22-69 9-49 (73)
153 2aje_A Telomere repeat-binding 22.5 1E+02 0.0034 18.3 3.3 30 12-41 4-33 (105)
154 3iz6_M 40S ribosomal protein S 22.5 76 0.0026 20.2 2.9 29 42-70 59-88 (152)
155 3jsj_A Putative TETR-family tr 22.3 23 0.00077 21.6 0.4 40 29-70 15-54 (190)
156 2k9q_A Uncharacterized protein 22.3 18 0.00061 19.2 -0.1 23 47-69 18-40 (77)
157 2fd5_A Transcriptional regulat 22.2 71 0.0024 19.1 2.8 39 30-69 14-52 (180)
158 2iu5_A DHAS, YCEG, HTH-type dh 22.2 46 0.0016 20.4 1.9 41 29-70 19-59 (195)
159 2ef8_A C.ECOT38IS, putative tr 22.1 18 0.00063 19.3 -0.0 23 47-69 26-48 (84)
160 3on2_A Probable transcriptiona 22.1 49 0.0017 19.9 2.0 41 29-70 18-58 (199)
161 3u5c_S 40S ribosomal protein S 21.7 80 0.0027 19.9 2.9 29 42-70 61-90 (146)
162 3i5g_C Myosin catalytic light 21.3 98 0.0033 18.7 3.3 36 23-58 2-44 (159)
163 2ict_A Antitoxin HIGA; helix-t 21.2 17 0.00057 20.2 -0.4 23 47-69 24-46 (94)
164 3i9v_2 NADH-quinone oxidoreduc 21.0 74 0.0025 20.6 2.7 34 28-61 27-60 (181)
165 3f6w_A XRE-family like protein 21.0 19 0.00067 19.3 -0.1 23 47-69 30-52 (83)
166 1iq3_A Ralbp1-interacting prot 20.8 38 0.0013 19.7 1.2 45 21-65 13-62 (110)
167 1wj7_A Hypothetical protein (R 20.7 1.2E+02 0.0041 18.0 3.4 47 16-63 12-59 (104)
168 3o9x_A Uncharacterized HTH-typ 20.7 42 0.0014 19.9 1.4 23 47-69 87-109 (133)
169 2hku_A A putative transcriptio 20.5 16 0.00055 23.0 -0.6 38 31-70 28-65 (215)
170 3nxc_A HTH-type protein SLMA; 20.3 45 0.0015 20.5 1.5 34 36-70 38-71 (212)
171 3kkd_A Transcriptional regulat 20.2 32 0.0011 21.9 0.8 39 31-70 43-81 (237)
172 2l49_A C protein; P2 bacteriop 20.0 25 0.00086 19.5 0.3 24 47-70 20-43 (99)
No 1
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=4.3e-24 Score=126.95 Aligned_cols=72 Identities=39% Similarity=0.505 Sum_probs=65.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccccccC
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQIVVT 83 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~~~~ 83 (103)
+...+.++.|+.|+..|+.+|+..|..++||+..++..||..++|++.+|+|||||||+++|+.+.......
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~~ 73 (80)
T 2dms_A 2 SSGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGG 73 (80)
T ss_dssp CCCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCCCC
Confidence 344677899999999999999999999999999999999999999999999999999999999887654433
No 2
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.89 E-value=5.6e-24 Score=123.52 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
+...+.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+...
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 2 SSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CSSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 345667889999999999999999999999999999999999999999999999999999999764
No 3
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=8.3e-24 Score=122.72 Aligned_cols=67 Identities=28% Similarity=0.309 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKV 78 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~ 78 (103)
+...+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+....
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 4556788999999999999999999999999999999999999999999999999999999997653
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=125.69 Aligned_cols=68 Identities=25% Similarity=0.309 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccc
Q psy9614 11 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKV 78 (103)
Q Consensus 11 ~~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~ 78 (103)
+..+.+.++.||.|+..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+++|+.++.
T Consensus 16 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 16 DKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CCCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 44567888999999999999999999999999999999999999999999999999999999997753
No 5
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.89 E-value=4.8e-24 Score=125.95 Aligned_cols=71 Identities=28% Similarity=0.331 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccccc
Q psy9614 10 SANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQI 80 (103)
Q Consensus 10 ~~~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~ 80 (103)
+++.+++.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+......
T Consensus 2 s~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CSCCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 45677888999999999999999999999999999999999999999999999999999999998765443
No 6
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=125.03 Aligned_cols=67 Identities=36% Similarity=0.429 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 11 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 11 ~~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
++..++.++.|+.|+..|+.+||..|..++||+..++..||..|||++.+|+|||||||+++|+...
T Consensus 11 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 11 GTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 3456778889999999999999999999999999999999999999999999999999999999765
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=9.2e-24 Score=125.41 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccccc
Q psy9614 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQIV 81 (103)
Q Consensus 13 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~~ 81 (103)
...+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+.......
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~ 71 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQEN 71 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHhc
Confidence 345678899999999999999999999999999999999999999999999999999999997655433
No 8
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-23 Score=121.83 Aligned_cols=66 Identities=27% Similarity=0.454 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
+...+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CSCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 345567889999999999999999999999999999999999999999999999999999998764
No 9
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.88 E-value=5.5e-24 Score=126.52 Aligned_cols=68 Identities=41% Similarity=0.640 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccccc
Q psy9614 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQI 80 (103)
Q Consensus 13 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~ 80 (103)
.....++.|+.|+..|+.+||..|..++||+..++..||..|||++.+|+|||||||+++|+..+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 34567889999999999999999999999999999999999999999999999999999999876644
No 10
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.88 E-value=7.5e-24 Score=122.90 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKV 78 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~ 78 (103)
+...+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+..+.
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 2 SSGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CSSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 3456678899999999999999999999999999999999999999999999999999999997653
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.3e-23 Score=121.92 Aligned_cols=65 Identities=38% Similarity=0.488 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 13 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
.....++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 34567889999999999999999999999999999999999999999999999999999998765
No 12
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=2e-23 Score=127.33 Aligned_cols=75 Identities=25% Similarity=0.345 Sum_probs=67.7
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccc
Q psy9614 4 YFFPPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKV 78 (103)
Q Consensus 4 ~~~~~~~~~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~ 78 (103)
....|..++.+.+.++.||.|+..|+..||..|..++||+..++..||..+||++.+|+|||||||+|+|+....
T Consensus 4 ~~g~p~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 4 RIGHPYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCSTTSCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCcCCCCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 334456667778889999999999999999999999999999999999999999999999999999999987554
No 13
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.88 E-value=6.4e-23 Score=122.04 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 13 KPRKIRRSRTTFTTYQLHQLERAFDK----TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 13 ~~~~~rr~Rt~~s~~q~~~Le~~F~~----~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
..++.+|.||.||..|+..|+..|+. ++||+..++.+||..|||++.+|+|||||||+|+++.
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 34578899999999999999999999 9999999999999999999999999999999999863
No 14
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.87 E-value=1.6e-23 Score=123.72 Aligned_cols=73 Identities=23% Similarity=0.251 Sum_probs=66.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccc
Q psy9614 6 FPPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKV 78 (103)
Q Consensus 6 ~~~~~~~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~ 78 (103)
.|.+.....++.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+..+.
T Consensus 2 ~p~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTTTSCCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 3555566677889999999999999999999999999999999999999999999999999999999987653
No 15
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.87 E-value=1.6e-23 Score=118.88 Aligned_cols=61 Identities=26% Similarity=0.294 Sum_probs=53.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccc
Q psy9614 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNE 76 (103)
Q Consensus 16 ~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~ 76 (103)
+.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+.+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 4678899999999999999999999999999999999999999999999999999999864
No 16
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=2.2e-23 Score=123.65 Aligned_cols=67 Identities=22% Similarity=0.215 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 11 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 11 ~~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
+..+.+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+++|+.+.
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 11 GEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 3446778899999999999999999999999999999999999999999999999999999998764
No 17
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.87 E-value=1.1e-22 Score=120.94 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDK-----TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
+...+.+|.||.||..|+..|+ .|.. ++||+..++.+||..|+|++.+|+|||||||+|+++.
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 3456788999999999999999 7999 9999999999999999999999999999999999863
No 18
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.87 E-value=5.3e-23 Score=120.34 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccc
Q psy9614 14 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQ 79 (103)
Q Consensus 14 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~ 79 (103)
..+.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 456788999999999999999999999999999999999999999999999999999999976544
No 19
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.87 E-value=5.9e-23 Score=120.39 Aligned_cols=68 Identities=50% Similarity=0.736 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQ 79 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~ 79 (103)
+..++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+.++.+
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~ 71 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFG 71 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhh
Confidence 34566788999999999999999999999999999999999999999999999999999999987653
No 20
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.87 E-value=2.4e-23 Score=125.78 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNE 76 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~ 76 (103)
+.+++.++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+..
T Consensus 23 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 23 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp --------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 44567889999999999999999999999999999999999999999999999999999999865
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=4.6e-23 Score=119.63 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 14 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 14 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
....++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 3456778999999999999999999999999999999999999999999999999999998755
No 22
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.86 E-value=2.7e-23 Score=120.08 Aligned_cols=65 Identities=25% Similarity=0.347 Sum_probs=60.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccccc
Q psy9614 17 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQIV 81 (103)
Q Consensus 17 ~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~~ 81 (103)
.++.|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+++|+..+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~ 66 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKGE 66 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccCC
Confidence 47889999999999999999999999999999999999999999999999999999998765443
No 23
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.86 E-value=3.3e-23 Score=118.01 Aligned_cols=61 Identities=28% Similarity=0.354 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccc
Q psy9614 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNE 76 (103)
Q Consensus 16 ~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~ 76 (103)
+.++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3578899999999999999999999999999999999999999999999999999999864
No 24
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.86 E-value=7.5e-23 Score=117.47 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=58.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 16 ~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
+.++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 45789999999999999999999999999999999999999999999999999999998764
No 25
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.3e-23 Score=123.09 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKT----QYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~----~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
+..++.++.||.|+..|+.+|+..|..+ +||+..++..||..+||++.+|+|||||||+|+|+...
T Consensus 3 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 3 SGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 3456778899999999999999999999 99999999999999999999999999999999998654
No 26
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.9e-22 Score=118.54 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=58.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccccc
Q psy9614 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQI 80 (103)
Q Consensus 18 rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~ 80 (103)
.+.|+.||..|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+......
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~~ 70 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKKS 70 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSSC
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhccc
Confidence 356678999999999999999999999999999999999999999999999999999876543
No 27
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.86 E-value=5.3e-23 Score=116.43 Aligned_cols=58 Identities=29% Similarity=0.493 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 17 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 17 ~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
.++.|+.||..|+.+||..|..++||+..++..||..+||++.+|++||||||+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999986
No 28
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.86 E-value=8.2e-23 Score=121.73 Aligned_cols=65 Identities=26% Similarity=0.375 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 13 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
..+..++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+..+
T Consensus 16 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 16 TNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp --------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 34567889999999999999999999999999999999999999999999999999999998754
No 29
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.5e-22 Score=118.23 Aligned_cols=65 Identities=17% Similarity=0.088 Sum_probs=59.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccccc
Q psy9614 17 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQIV 81 (103)
Q Consensus 17 ~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~~ 81 (103)
....|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+.......
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~~~ 72 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRSG 72 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccCCC
Confidence 34568999999999999999999999999999999999999999999999999999998765443
No 30
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.86 E-value=6.5e-23 Score=118.45 Aligned_cols=63 Identities=29% Similarity=0.366 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccc
Q psy9614 17 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQ 79 (103)
Q Consensus 17 ~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~ 79 (103)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 578999999999999999999999999999999999999999999999999999999876543
No 31
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.86 E-value=1e-22 Score=114.10 Aligned_cols=57 Identities=35% Similarity=0.514 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 18 rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999886
No 32
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.85 E-value=3.7e-23 Score=119.45 Aligned_cols=64 Identities=41% Similarity=0.581 Sum_probs=60.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccc
Q psy9614 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQ 79 (103)
Q Consensus 16 ~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~ 79 (103)
+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+.++..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 4688999999999999999999999999999999999999999999999999999999877643
No 33
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.85 E-value=7.6e-23 Score=121.77 Aligned_cols=65 Identities=52% Similarity=0.775 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 13 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 45678889999999999999999999999999999999999999999999999999999998654
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.85 E-value=1.6e-22 Score=116.78 Aligned_cols=63 Identities=27% Similarity=0.382 Sum_probs=59.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccc
Q psy9614 17 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQ 79 (103)
Q Consensus 17 ~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~ 79 (103)
.++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 478899999999999999999999999999999999999999999999999999999977643
No 35
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.85 E-value=1.7e-22 Score=114.03 Aligned_cols=58 Identities=34% Similarity=0.412 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 18 rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
++.|+.||..|+..|+..|..++||+..++..||..+||++.+|++||||+|+++|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6789999999999999999999999999999999999999999999999999999874
No 36
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=2.5e-22 Score=122.85 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=64.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcC---------------CCcccceeccccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLD---------------LSEARVQVNSDSQIPTLGSNE 76 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~---------------l~~~~V~vWFqNrR~k~rr~~ 76 (103)
+...+.++.|+.|+..|+.+||..|+.++||+..++..||..|+ |++.+|++||||||+++|+..
T Consensus 2 ~~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 2 SSGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CSSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999999999 999999999999999999987
Q ss_pred ccccc
Q psy9614 77 KVQIV 81 (103)
Q Consensus 77 ~~~~~ 81 (103)
.....
T Consensus 82 ~~~~~ 86 (95)
T 2cuf_A 82 NIAAI 86 (95)
T ss_dssp HCCCC
T ss_pred hccCC
Confidence 76433
No 37
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=1.3e-22 Score=124.58 Aligned_cols=66 Identities=27% Similarity=0.329 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccc
Q psy9614 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKV 78 (103)
Q Consensus 13 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~ 78 (103)
.....++.|+.|+..|+.+||..|..++||+..++..||..|||++.+|+|||||||+++|+..+.
T Consensus 30 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 30 GLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 346678899999999999999999999999999999999999999999999999999999987654
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.85 E-value=1.9e-22 Score=113.78 Aligned_cols=58 Identities=50% Similarity=0.787 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 20 SRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 20 ~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+.++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999999999999999999999999999999999999998764
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-22 Score=115.29 Aligned_cols=61 Identities=34% Similarity=0.496 Sum_probs=58.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccc
Q psy9614 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKV 78 (103)
Q Consensus 18 rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~ 78 (103)
++.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 6889999999999999999999999999999999999999999999999999999987654
No 40
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=1.5e-21 Score=118.17 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccccc
Q psy9614 23 TFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQIV 81 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~~ 81 (103)
.||..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+++++.+.....
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~~ 75 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEI 75 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhhc
Confidence 89999999999999999999999999999999999999999999999999987655443
No 41
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.84 E-value=2.9e-22 Score=113.28 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccc
Q psy9614 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLG 73 (103)
Q Consensus 15 ~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~r 73 (103)
.+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 46788999999999999999999999999999999999999999999999999999875
No 42
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.84 E-value=3.9e-22 Score=116.29 Aligned_cols=63 Identities=24% Similarity=0.234 Sum_probs=58.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHhcCCCcccceeccccccccccccccccc
Q psy9614 18 RRSRTTFTTYQLHQLERAFDK-TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQI 80 (103)
Q Consensus 18 rr~Rt~~s~~q~~~Le~~F~~-~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~ 80 (103)
.+.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|+|||||||+++|+......
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 65 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPS 65 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCCC
Confidence 467899999999999999996 999999999999999999999999999999999999775443
No 43
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.84 E-value=4.6e-22 Score=111.18 Aligned_cols=57 Identities=28% Similarity=0.393 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccc
Q psy9614 17 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLG 73 (103)
Q Consensus 17 ~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~r 73 (103)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999875
No 44
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-21 Score=114.62 Aligned_cols=65 Identities=17% Similarity=0.083 Sum_probs=60.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccccc
Q psy9614 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQI 80 (103)
Q Consensus 16 ~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~ 80 (103)
..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+.....+
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 69 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQC 69 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCC
Confidence 34678999999999999999999999999999999999999999999999999999999766443
No 45
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.84 E-value=4.8e-22 Score=116.23 Aligned_cols=63 Identities=22% Similarity=0.193 Sum_probs=58.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHhcCCCcccceeccccccccccccccccc
Q psy9614 18 RRSRTTFTTYQLHQLERAFDK-TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQI 80 (103)
Q Consensus 18 rr~Rt~~s~~q~~~Le~~F~~-~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~ 80 (103)
.+.|+.|+..|+.+||..|.. ++||+..++..||..+||++.+|++||||||+++|+......
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~~ 66 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPS 66 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCCC
Confidence 467899999999999999995 999999999999999999999999999999999999875433
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=8.3e-22 Score=115.91 Aligned_cols=61 Identities=16% Similarity=0.018 Sum_probs=56.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccc
Q psy9614 19 RSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQ 79 (103)
Q Consensus 19 r~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~ 79 (103)
..|+.||.+|+.+|+..|..++||+..++.+||..+||++.+|+|||||+|+++|+.....
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 3466799999999999999999999999999999999999999999999999999876543
No 47
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.83 E-value=8.8e-22 Score=120.64 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
......++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+|+...
T Consensus 20 ~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 20 APKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp -------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 345566788999999999999999999999999999999999999999999999999999998754
No 48
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.8e-21 Score=111.40 Aligned_cols=62 Identities=23% Similarity=0.200 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHhcCCCcccceecccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDK-TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLG 73 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~-~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~r 73 (103)
++.+..+|.||.|+.+|+.+|+..|+. ++||+...+..||+++||++++|+|||||+|.-.+
T Consensus 2 ~~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 345578999999999999999999999 99999999999999999999999999999997644
No 49
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.7e-21 Score=113.76 Aligned_cols=66 Identities=9% Similarity=0.053 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDK---TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
+.+++.++.|+.|+..|+.+|+.+|.. ++||+..++..||..+||++.+|++||+|+|+++++...
T Consensus 2 ~~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 2 SSGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 345667888999999999999999987 999999999999999999999999999999999988654
No 50
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.83 E-value=6.9e-22 Score=110.13 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 22 TTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 22 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
|.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999874
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=3.2e-21 Score=109.92 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=56.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 17 IRRSRTTFTTYQLHQLERAF---DKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 17 ~rr~Rt~~s~~q~~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
.++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 57889999999999999999 899999999999999999999999999999999999874
No 52
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-20 Score=113.66 Aligned_cols=61 Identities=20% Similarity=0.138 Sum_probs=55.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccccc
Q psy9614 21 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQIV 81 (103)
Q Consensus 21 Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~~ 81 (103)
+..||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+++.......
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCCC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhhc
Confidence 3459999999999999999999999999999999999999999999999999987765433
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.81 E-value=1.7e-21 Score=117.26 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=58.4
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccccc
Q psy9614 18 RRSRTTFTTYQLHQLERAF---DKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQI 80 (103)
Q Consensus 18 rr~Rt~~s~~q~~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~ 80 (103)
++.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.+|++||+|+|+++|+......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccccc
Confidence 6789999999999999999 89999999999999999999999999999999999998776543
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=112.86 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHhcCCCcccceecccccccccccccccc
Q psy9614 13 KPRKIRRSRTTFTTYQLHQLERAFDK---TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQ 79 (103)
Q Consensus 13 ~~~~~rr~Rt~~s~~q~~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~ 79 (103)
...+.++.|+.|+..|+.+|+.+|.. ++||+..++..||..+||++.+|++||+|+|+++++.....
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 34567788999999999999999987 59999999999999999999999999999999998765443
No 55
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=5.3e-21 Score=117.99 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhc---------------------CCCcccceecccccccc
Q psy9614 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRL---------------------DLSEARVQVNSDSQIPT 71 (103)
Q Consensus 13 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l---------------------~l~~~~V~vWFqNrR~k 71 (103)
..++.++.|+.|++.|+.+|+..|+.++||+..+|++||..| +|++.+|+|||||||++
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 456789999999999999999999999999999999999999 79999999999999999
Q ss_pred ccccccccc
Q psy9614 72 LGSNEKVQI 80 (103)
Q Consensus 72 ~rr~~~~~~ 80 (103)
+++..+...
T Consensus 82 ~kr~~~~~~ 90 (102)
T 2da6_A 82 EAFRQKLAM 90 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhHhhh
Confidence 998876543
No 56
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.81 E-value=6e-21 Score=124.86 Aligned_cols=64 Identities=22% Similarity=0.207 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
+..++.++.||.|+..|+.+||..|..++||+..++..||..+||++.+|+|||||||+|+|+.
T Consensus 82 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 82 GANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4456778899999999999999999999999999999999999999999999999999999985
No 57
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.81 E-value=6.3e-21 Score=111.35 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=58.3
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccc
Q psy9614 18 RRSRTTFTTYQLHQLERAF---DKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQ 79 (103)
Q Consensus 18 rr~Rt~~s~~q~~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~ 79 (103)
++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 6789999999999999999 8999999999999999999999999999999999999876543
No 58
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.80 E-value=9.1e-21 Score=126.11 Aligned_cols=66 Identities=21% Similarity=0.151 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccccc
Q psy9614 14 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQ 79 (103)
Q Consensus 14 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~ 79 (103)
.++.++.||.|+..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+|+.....
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 161 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC--
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCC
Confidence 467788999999999999999999999999999999999999999999999999999999987643
No 59
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.80 E-value=1.3e-20 Score=116.07 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHh------------------cC---CCcccceecccccccc
Q psy9614 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASR------------------LD---LSEARVQVNSDSQIPT 71 (103)
Q Consensus 13 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~------------------l~---l~~~~V~vWFqNrR~k 71 (103)
..++.++.|+.|+..|+.+||..|..++||+...+.+||.. || |++.+|+|||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34677899999999999999999999999999999999999 88 9999999999999999
Q ss_pred cccccccc
Q psy9614 72 LGSNEKVQ 79 (103)
Q Consensus 72 ~rr~~~~~ 79 (103)
+++++...
T Consensus 85 ~k~k~~~~ 92 (99)
T 1lfb_A 85 EAFRHKLA 92 (99)
T ss_dssp TSCCC---
T ss_pred HHHhchhh
Confidence 98877544
No 60
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.80 E-value=2e-20 Score=122.83 Aligned_cols=63 Identities=27% Similarity=0.388 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
+.+.+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+||
T Consensus 88 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 88 GEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 456678889999999999999999999999999999999999999999999999999999987
No 61
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=2.2e-20 Score=108.13 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccc
Q psy9614 22 TTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKV 78 (103)
Q Consensus 22 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~ 78 (103)
..+|..|+..||..|..++||+..++..||..+||++.+|+|||||||+|+|+.+..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 468999999999999999999999999999999999999999999999999987654
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.79 E-value=1.6e-20 Score=124.40 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 14 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 14 ~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
..+.++.||.|+..|+.+||..|..++||+..++..||..+||++.+|+|||||||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 35778899999999999999999999999999999999999999999999999999999985
No 63
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.79 E-value=1.7e-20 Score=105.70 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 21 RTTFTTYQLHQLERAFDK---TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 21 Rt~~s~~q~~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 689999999999999999 9999999999999999999999999999999999874
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=6.7e-21 Score=111.19 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=54.6
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccc
Q psy9614 18 RRSRTTFTTYQLHQLERAF-DKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNE 76 (103)
Q Consensus 18 rr~Rt~~s~~q~~~Le~~F-~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~ 76 (103)
.+.+..++..|+.+||..| ..++||+..++..||..+||++.+|+|||||||+++|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4556678889999999999 9999999999999999999999999999999999999764
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.78 E-value=4.1e-20 Score=110.46 Aligned_cols=61 Identities=20% Similarity=0.156 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHhcCCCcccceeccccccccccccccc
Q psy9614 18 RRSRTTFTTYQLHQLERAFDK---TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKV 78 (103)
Q Consensus 18 rr~Rt~~s~~q~~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~ 78 (103)
++.|++|+..|+.+|+.+|.. ++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 345667999999999999999 9999999999999999999999999999999999987544
No 66
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.78 E-value=5.8e-20 Score=110.59 Aligned_cols=60 Identities=20% Similarity=0.170 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 15 RKIRRSRTTFTTYQLHQLERAFDK---TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 15 ~~~rr~Rt~~s~~q~~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
.+.++.|+.|+..|+.+|+.+|.. ++||+..++..||..+||++.+|++||+|||+++|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 445667999999999999999999 999999999999999999999999999999999873
No 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.77 E-value=7.6e-20 Score=121.39 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccccc
Q psy9614 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQI 80 (103)
Q Consensus 13 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~~~ 80 (103)
...+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|+|||||||+++|+......
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~~ 160 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEHH 160 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-----
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCCC
Confidence 34567889999999999999999999999999999999999999999999999999999998765543
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-19 Score=103.74 Aligned_cols=54 Identities=13% Similarity=-0.002 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 22 TTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 22 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
..++..|+..||..|..++||+..++..||..+||++.+|+|||||||+|.++.
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 345799999999999999999999999999999999999999999999998874
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.1e-19 Score=103.63 Aligned_cols=50 Identities=22% Similarity=0.150 Sum_probs=46.5
Q ss_pred HHHHHHHHHH-hhcCCCCHHHHHHHHHhcCCCcccceeccccccccccccc
Q psy9614 27 YQLHQLERAF-DKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNE 76 (103)
Q Consensus 27 ~q~~~Le~~F-~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~ 76 (103)
.|+.+||..| ..++||+..++.+||..|||+++||+|||||||+++|+..
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 4799999999 5799999999999999999999999999999999999743
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.76 E-value=4.7e-20 Score=105.36 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 25 TTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 25 s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
+..|+..|+..|..++||+..++.+||..+||++.+|++||||||+++|+.
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 689999999999999999999999999999999999999999999999864
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.76 E-value=1e-19 Score=120.04 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 15 ~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
.+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5678899999999999999999999999999999999999999999999999999999874
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=5.9e-18 Score=97.33 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHhcCCCcccceeccccccccccccccc
Q psy9614 23 TFTTYQLHQLERAFD---KTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKV 78 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~---~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~ 78 (103)
.|+.+|+.+|+.+|. .++||+..++..||..+||++.+|++||+|+|+++++....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 799999999999999 99999999999999999999999999999999999986543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.65 E-value=7.6e-18 Score=114.59 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcC---------------------CCcccceecccccccc
Q psy9614 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLD---------------------LSEARVQVNSDSQIPT 71 (103)
Q Consensus 13 ~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~---------------------l~~~~V~vWFqNrR~k 71 (103)
..++.+|.|+.|+..|+.+|+..|..++||+...|.+||..|+ |++.+|++||||||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3467889999999999999999999999999999999999999 9999999999999998
Q ss_pred ccc
Q psy9614 72 LGS 74 (103)
Q Consensus 72 ~rr 74 (103)
.+.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.61 E-value=1.5e-16 Score=109.67 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcC---------------------CCcccceecccccc
Q psy9614 11 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLD---------------------LSEARVQVNSDSQI 69 (103)
Q Consensus 11 ~~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~---------------------l~~~~V~vWFqNrR 69 (103)
.+..++.+|.|+.|++.|+.+|+..|..++||+..+|++||..++ |++.+|++||+|||
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 344678899999999999999999999999999999999999987 88999999999999
Q ss_pred ccc
Q psy9614 70 PTL 72 (103)
Q Consensus 70 ~k~ 72 (103)
+..
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 875
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.4e-16 Score=89.51 Aligned_cols=46 Identities=9% Similarity=0.027 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccc
Q psy9614 26 TYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPT 71 (103)
Q Consensus 26 ~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k 71 (103)
.+|+.+|+.+|..+++|+..++..||..+||+.++|+|||||+|+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.50 E-value=2.6e-15 Score=90.45 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHhcCCCcccceeccccccccccccccc
Q psy9614 22 TTFTTYQLHQLERAFDK---TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKV 78 (103)
Q Consensus 22 t~~s~~q~~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~~ 78 (103)
..|+..+..+|+.+|.. ++||+..++..||..+||++.||++||+|+|.+.++....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 46899999999999987 9999999999999999999999999999999999876543
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.47 E-value=8.5e-15 Score=107.11 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=52.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccc
Q psy9614 19 RSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLG 73 (103)
Q Consensus 19 r~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~r 73 (103)
+.++.|+..|+..|+..|..++||+..+|.+||..+||+++||+|||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4467899999999999999999999999999999999999999999999999976
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.94 E-value=6.3e-11 Score=60.14 Aligned_cols=21 Identities=0% Similarity=-0.110 Sum_probs=18.6
Q ss_pred ccceecccccccccccccccc
Q psy9614 59 ARVQVNSDSQIPTLGSNEKVQ 79 (103)
Q Consensus 59 ~~V~vWFqNrR~k~rr~~~~~ 79 (103)
+||+|||||||+|+|+.+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999987763
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.30 E-value=0.0045 Score=35.12 Aligned_cols=42 Identities=24% Similarity=0.139 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccc
Q psy9614 27 YQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQ 68 (103)
Q Consensus 27 ~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNr 68 (103)
.-.+.|+.+|.........+...|+.+..|+..+|+-||-.|
T Consensus 16 ~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 16 PDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 345789999999999999999999999999999999999543
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=86.14 E-value=0.46 Score=25.12 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccc
Q psy9614 21 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSD 66 (103)
Q Consensus 21 Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFq 66 (103)
|..|+.+....+...+.... ........+|..+||+...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHHHHHHHHH
Confidence 45789888776655554332 2112256899999999999999964
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=82.98 E-value=1.2 Score=25.40 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccc
Q psy9614 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSD 66 (103)
Q Consensus 18 rr~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFq 66 (103)
++.+..|+.++....-..+... . ....+|..+||+...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 4456789998865555555432 2 255789999999999999974
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=78.14 E-value=1.5 Score=26.39 Aligned_cols=48 Identities=8% Similarity=0.155 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 20 SRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 20 ~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
.|..||.++...+-..+..+..... ..+|..+|++...|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 5678999998877777755554432 36789999999999999876554
No 83
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=77.74 E-value=0.015 Score=37.75 Aligned_cols=30 Identities=3% Similarity=-0.087 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCH
Q psy9614 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDV 44 (103)
Q Consensus 15 ~~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~ 44 (103)
.+.+|+||.|+..|+..|+..|+.+++|+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 566889999999999999999999999864
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=74.14 E-value=2 Score=21.03 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccc
Q psy9614 24 FTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 24 ~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR 69 (103)
++.++...+...+... . ...++|..+|++...|..|+....
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 4555555554555433 2 356789999999999999986443
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=72.87 E-value=2.7 Score=20.14 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccc
Q psy9614 23 TFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDS 67 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqN 67 (103)
.++..+...+...+.... ...++|..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g~-----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHhh
Confidence 467777655555554332 3567899999999999999753
No 86
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=64.44 E-value=5.2 Score=22.79 Aligned_cols=42 Identities=7% Similarity=0.102 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHhcCCCcccceeccc
Q psy9614 21 RTTFTTYQLHQLERAFDKT-QYPDVFTREDLASRLDLSEARVQVNSD 66 (103)
Q Consensus 21 Rt~~s~~q~~~Le~~F~~~-~~p~~~~r~~La~~l~l~~~~V~vWFq 66 (103)
|..||.++....-..+... . .....+|..+||+...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHH
Confidence 3578888776555555322 2 2356889999999999999975
No 87
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=59.97 E-value=1.4 Score=25.20 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 24 FTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 24 ~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
++..+..+|.-.|.... ...++|..+|++...|+.+...-+.+.++
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 45566666655443332 45688999999999999887655555544
No 88
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=58.02 E-value=1.8 Score=22.91 Aligned_cols=47 Identities=15% Similarity=-0.039 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 23 TFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
.+++.+..+|...|..+. ...++|..+|++...|..+...-+.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467888888887664332 35678999999999999887655555544
No 89
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=57.78 E-value=6 Score=24.54 Aligned_cols=24 Identities=4% Similarity=0.165 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCcccceeccccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
...+|..+|++..+++.|.-..|.
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCCB
T ss_pred HHHHHHHhCCCcccEEEEEeecCC
Confidence 567899999999999999965553
No 90
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=55.10 E-value=13 Score=22.91 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=36.9
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHH-Hhc--CCCcccceeccccc
Q psy9614 18 RRSRTTFTTYQLHQLERAF-DKTQYPDVFTREDLA-SRL--DLSEARVQVNSDSQ 68 (103)
Q Consensus 18 rr~Rt~~s~~q~~~Le~~F-~~~~~p~~~~r~~La-~~l--~l~~~~V~vWFqNr 68 (103)
++.|..+|.+|...+-.++ +.++..+..+....| ..+ +++...|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678999999999999998 667766554433322 256 77888888887654
No 91
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=53.72 E-value=11 Score=21.79 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHH-hhc-CCCC-HHHHHHHHHhcCCCcccceeccc
Q psy9614 21 RTTFTTYQLHQLERAF-DKT-QYPD-VFTREDLASRLDLSEARVQVNSD 66 (103)
Q Consensus 21 Rt~~s~~q~~~Le~~F-~~~-~~p~-~~~r~~La~~l~l~~~~V~vWFq 66 (103)
+..||.++....-..+ ... .+.+ ......+|..+||+...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3468888775544444 322 1223 24677899999999999999964
No 92
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=53.03 E-value=5 Score=21.29 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 23 TFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
.+++.+..+|...|..+.+- ...-.++|..+|++...|+.+...-+.+.+..
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47888888988887321111 12356789999999999999876555555543
No 93
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=50.13 E-value=5 Score=26.08 Aligned_cols=54 Identities=13% Similarity=0.098 Sum_probs=32.7
Q ss_pred CCCCCCCCCCHHHH-HHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 16 KIRRSRTTFTTYQL-HQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 16 ~~rr~Rt~~s~~q~-~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
...+.|...+..++ ......|....| .......||..+|++...|-..|.|+-.
T Consensus 17 ~~~~~r~~~tr~~Il~aA~~l~~~~G~-~~~s~~~IA~~aGvs~~tlY~~F~~K~~ 71 (211)
T 3fiw_A 17 LYFQGMTKMNRETVITEALDLLDEVGL-DGVSTRRLAKRLGVEQPSLYWYFRTKRD 71 (211)
T ss_dssp -------CCCHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSCTHHHHTTCSSHHH
T ss_pred CCcccccccCHHHHHHHHHHHHHhcCc-ccCCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 34444555665543 344555666654 3334668899999999999999988743
No 94
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=48.88 E-value=8.3 Score=20.69 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccc
Q psy9614 23 TFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLG 73 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~r 73 (103)
.+++.+..+|...|..... ....-.++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788899999888752100 0113458899999999999988765444444
No 95
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=46.75 E-value=6.7 Score=24.82 Aligned_cols=40 Identities=5% Similarity=-0.048 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 30 HQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 30 ~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
.+....|....|- ......+|...|++...|-..|.|+-.
T Consensus 35 ~aa~~lf~~~G~~-~~tv~~IA~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 35 NAAIEVLAREGAR-GLTFRAVDVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHTCTT-TCCHHHHHHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHhChh-hccHHHHHHHcCCCcchHHHhCCCHHH
Confidence 3444457766654 445678899999999999999998743
No 96
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=46.43 E-value=8 Score=25.76 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=33.8
Q ss_pred CCCCCCCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 18 RRSRTTFTTYQ-LHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 18 rr~Rt~~s~~q-~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
+..+...+.++ +..-...|....|- ......||..+|++...|-..|.||-.
T Consensus 13 r~~r~~~tr~~Il~AA~~l~~e~G~~-~~S~~~IA~~aGvs~~tlY~hF~sK~~ 65 (243)
T 2g7l_A 13 RPAKPALSRRWIVDTAVALMRAEGLE-KVTMRRLAQELDTGPASLYVYVANTAE 65 (243)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHCSS-SCCHHHHHHHTTSCHHHHTTTCCSHHH
T ss_pred CCCCcccCHHHHHHHHHHHHHhcCch-hcCHHHHHHHHCCChhHHHHHcCCHHH
Confidence 33445556544 33445557766653 334667899999999999999988743
No 97
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=45.67 E-value=49 Score=20.06 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHhcCCCc
Q psy9614 20 SRTTFTTYQLHQLERAFDK-----TQYPDVFTREDLASRLDLSE 58 (103)
Q Consensus 20 ~Rt~~s~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~ 58 (103)
.+..+|..|+..|...|.. +.+.+..+...+...+|...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 3567999999999999965 45788888888788888654
No 98
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=45.59 E-value=6.2 Score=21.96 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=36.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 19 RSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 19 r~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
..-..+++.+..+|.-.++ + ....++|..+|++...|+.+..+-+.|.+.
T Consensus 17 ~~~~~Lt~~e~~vl~l~~~-g-----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 17 RDVNQLTPRERDILKLIAQ-G-----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp CCGGGSCHHHHHHHHHHTT-T-----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHccCCHHHHHHHHHHHc-C-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3345789999999987432 2 245688999999999999887655555443
No 99
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=45.14 E-value=8.7 Score=25.51 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=32.1
Q ss_pred CCCCCCCHHHH-HHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 19 RSRTTFTTYQL-HQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 19 r~Rt~~s~~q~-~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
..+...+.+++ ..-...|....|- ......||..+|++...|-..|.|+-.
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGDAE-TFSVRKLAASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSSCC-CCCHHHHHHHTTSCHHHHHHHTSSHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCcCHHHHHHHcCCHHH
Confidence 34445665543 3444456655543 345667899999999999999988743
No 100
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=45.04 E-value=3.7 Score=24.64 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 23 TFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
.+++.+..++.-.|..+. ...++|..+|++...|+.+...-+.+.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467888888877765443 35688999999999999988766655544
No 101
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=44.36 E-value=8 Score=22.11 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 22 TTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 22 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
..+++.+..+|.-.++-. ...++|..+|++...|+.+..+=+.|.+..
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 458899999988753322 246789999999999999887666665544
No 102
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=44.24 E-value=13 Score=22.06 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccc
Q psy9614 22 TTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQ 68 (103)
Q Consensus 22 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNr 68 (103)
..++.++...+...+..+. ....+|..+|++...|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~G~-----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 4678887777766665432 35677999999999999998643
No 103
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=42.97 E-value=9.9 Score=19.02 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccc
Q psy9614 26 TYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSD 66 (103)
Q Consensus 26 ~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFq 66 (103)
+.+...+...+..+. ...++|..+|++...|..|..
T Consensus 18 ~~~~~~i~~l~~~g~-----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMGY-----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTTC-----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
Confidence 555555555544332 356789999999999988864
No 104
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=42.70 E-value=5.5 Score=22.38 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 23 TFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
.+++.+..+|...|..... ....-.++|..+|++...|+.+...-+.+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4678888888887752100 01235678999999999999987655555554
No 105
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=40.29 E-value=4.2 Score=24.68 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 24 FTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 24 ~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
+++.+..+|. .|- ......++|..+|++...|+.+...-+.+.++
T Consensus 110 L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 110 FSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp SCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4555555555 322 22246788999999999999887655554443
No 106
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=38.85 E-value=24 Score=20.41 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccc
Q psy9614 21 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPT 71 (103)
Q Consensus 21 Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k 71 (103)
...+++.+..+|.-.++ .. .-.++|..++++...|+.+..+=+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~-G~-----s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE-GF-----LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHH-TC-----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc-CC-----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45689999999977553 22 24788999999999999887644443
No 107
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=38.00 E-value=9.7 Score=20.07 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccc
Q psy9614 21 RTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLG 73 (103)
Q Consensus 21 Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~r 73 (103)
-..+++.+..+|.-.+ ..+ ...++|..+|++...|..+...-+.+.+
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 3468899999998742 222 3567899999999999888765444443
No 108
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=37.59 E-value=9.6 Score=23.62 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccc
Q psy9614 29 LHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 29 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR 69 (103)
+..-...|....| . .....+|...|++...|-..|.|+-
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTRE 59 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHH
Confidence 4455566888887 5 6888999999999999999998874
No 109
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=37.56 E-value=9.7 Score=21.03 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHhcCCCcccceeccc
Q psy9614 20 SRTTFTTYQLHQLERAFDK-----TQYPDVFTREDLASRLDLSEARVQVNSD 66 (103)
Q Consensus 20 ~Rt~~s~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~V~vWFq 66 (103)
.-..++..+...|...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 17 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp --CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 3456788899999999854 4467778888888888887777766663
No 110
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=37.45 E-value=7.7 Score=20.87 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 24 FTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 24 ~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
+++.+..+|.-.+. .+ ...++|..+|++...|+.+...=+.+.+.
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 56777777766322 21 34578999999999999887655555543
No 111
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=37.09 E-value=27 Score=22.91 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=31.8
Q ss_pred CCCCCCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccc
Q psy9614 19 RSRTTFTTYQ-LHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 19 r~Rt~~s~~q-~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR 69 (103)
+.+...+.++ +......|....|- ......||..+|++...|-..|.||-
T Consensus 11 ~~~~~~~r~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~hF~~K~ 61 (237)
T 2hxo_A 11 RRQEPLSRERIVGAAVELLDTVGER-GLTFRALAERLATGPGAIYWHITGKA 61 (237)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTT-TCCHHHHHHHHTSCGGGGGGTCCCHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHHCCChHHHHHhcCCHH
Confidence 3344555544 33445557766654 34466789999999999999998874
No 112
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=36.64 E-value=6.9 Score=19.92 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
...||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987654
No 113
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=36.12 E-value=6.2 Score=23.53 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 23 TFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
.+++.+..++.-.|..+. ...++|..+|++...|+.+...-+.+.+.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 356777777766654333 45688999999999999987765555544
No 114
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.09 E-value=8.3 Score=20.21 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=17.4
Q ss_pred HHHHHHhcCCCcccceecc
Q psy9614 47 REDLASRLDLSEARVQVNS 65 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWF 65 (103)
...||..+|++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5679999999999999998
No 115
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=35.09 E-value=7.6 Score=19.88 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
...||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 116
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=34.88 E-value=18 Score=20.82 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccc
Q psy9614 23 TFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDS 67 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqN 67 (103)
.++.++...+...+... + ....+|..+|++...|..|...
T Consensus 17 ~~s~~~r~~i~~~~~~g-~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG-I----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 57887776666666532 2 2456899999999999999864
No 117
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=33.99 E-value=14 Score=23.03 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccc
Q psy9614 30 HQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 30 ~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR 69 (103)
..-...|....| . .....+|...|++...|-..|.|+-
T Consensus 20 ~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 20 EVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 334455777787 5 6788899999999999999998874
No 118
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=33.48 E-value=62 Score=20.15 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHhh--cCCCCHHHHHHHHHhc
Q psy9614 22 TTFTTYQLHQLERAFDK--TQYPDVFTREDLASRL 54 (103)
Q Consensus 22 t~~s~~q~~~Le~~F~~--~~~p~~~~r~~La~~l 54 (103)
..++++++..|+..|.. ...|+...+..+|-.|
T Consensus 16 ~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~L 50 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGL 50 (134)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 56899999999999966 6788998888887555
No 119
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=33.32 E-value=8.9 Score=24.73 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCcccceeccccccc
Q psy9614 44 VFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 44 ~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
.....++|..+|++...|+.+...-+.
T Consensus 214 g~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 214 DQTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp ---------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345678899999999999988764443
No 120
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=33.16 E-value=8.6 Score=19.92 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCcccceeccccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
...||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999877654
No 121
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=33.14 E-value=6.2 Score=24.45 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccccc
Q psy9614 23 TFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEK 77 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~~~ 77 (103)
.+++.+..+|.-.| .......++|..+|+++..|+.....-|.+.++...
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 35566666654332 222346788999999999999998766666665543
No 122
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=32.48 E-value=74 Score=19.32 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccc
Q psy9614 22 TTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQ 68 (103)
Q Consensus 22 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNr 68 (103)
..++.++...+...+.... ....+|..+|++...|..|...-
T Consensus 24 ~~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp CSSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 4688887776666665432 34567999999999999998643
No 123
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=32.14 E-value=11 Score=19.89 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
..+||..+|++...|.-|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987653
No 124
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=32.10 E-value=9.4 Score=20.10 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
...||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987654
No 125
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.93 E-value=7.2 Score=21.98 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccccccc
Q psy9614 22 TTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 22 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
..+++.+..+|.-.+. .+ ...++|..+|++...|+.+..+-+.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4578888888877432 22 23467999999999999887765555544
No 126
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=31.38 E-value=8.7 Score=24.10 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCCcccceeccccccccccc
Q psy9614 46 TREDLASRLDLSEARVQVNSDSQIPTLGS 74 (103)
Q Consensus 46 ~r~~La~~l~l~~~~V~vWFqNrR~k~rr 74 (103)
.-.++|..+|++...|+.+...-+.+.++
T Consensus 158 s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35678999999999999887655555443
No 127
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=31.20 E-value=8.7 Score=24.81 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccc
Q psy9614 24 FTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLG 73 (103)
Q Consensus 24 ~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~r 73 (103)
+++.+..+|.-.|..+ ....++|..+|++...|+.+...-+.+.+
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4555555555554322 24567899999999999887765444443
No 128
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=30.90 E-value=7 Score=21.19 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=20.2
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
...||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56899999999999999997765
No 129
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=30.06 E-value=13 Score=19.76 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
..++|..||++...|..|-.+..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCC
Confidence 45789999999999999987655
No 130
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.75 E-value=11 Score=19.83 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=19.8
Q ss_pred HHHHHHhcCCCcccceeccccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
...||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999876543
No 131
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=29.67 E-value=11 Score=19.87 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
...||..+|++...|..|...++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56799999999999999987654
No 132
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=29.65 E-value=25 Score=21.21 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccc
Q psy9614 22 TTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDS 67 (103)
Q Consensus 22 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqN 67 (103)
..++.++....-..+..+ . ....+|..+|++...|..|...
T Consensus 31 ~~~s~e~r~~iv~~~~~G-~----s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG-V----RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 468888777666666532 2 2456899999999999999853
No 133
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=29.33 E-value=11 Score=23.56 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccc
Q psy9614 30 HQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 30 ~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR 69 (103)
......|....|- ......+|...|++...+-..|.++-
T Consensus 38 ~aa~~l~~~~G~~-~~tv~~Ia~~agvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 38 KVATELFREKGYY-ATSLDDIADRIGFTKPAIYYYFKSKE 76 (218)
T ss_dssp HHHHHHHHHTCTT-TCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHcCcc-cCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3444557766654 34466789999999999999998874
No 134
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=29.08 E-value=11 Score=19.33 Aligned_cols=24 Identities=8% Similarity=0.284 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCcccceeccccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999876554
No 135
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=29.05 E-value=11 Score=20.78 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=16.8
Q ss_pred HHHHHHhcCCCcccceeccc
Q psy9614 47 REDLASRLDLSEARVQVNSD 66 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFq 66 (103)
..++|..+|++...|+.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999953
No 136
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=27.62 E-value=11 Score=20.79 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCcccceeccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQ 68 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNr 68 (103)
...||..||++...|--|..+.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~ 34 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAG 34 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHhCC
Confidence 6789999999999999998543
No 137
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.37 E-value=48 Score=18.63 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccc
Q psy9614 19 RSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQ 68 (103)
Q Consensus 19 r~Rt~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNr 68 (103)
..-..+|..+..+|.-.+ .+. ...++|..+|++...|+....+=
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-~G~-----s~~eIA~~L~iS~~TV~~~~~~i 68 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-KGF-----TNQEIADALHLSKRSIEYSLTSI 68 (90)
T ss_dssp ----CCCHHHHHHHHHHH-TTC-----CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHH-cCC-----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 345579999999998766 222 35678999999999988765543
No 138
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=27.31 E-value=13 Score=19.65 Aligned_cols=23 Identities=13% Similarity=0.149 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
...||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987765
No 139
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=26.96 E-value=56 Score=20.08 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccc
Q psy9614 29 LHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 29 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR 69 (103)
+......|....|-. .....+|...|++...+-..|.|+-
T Consensus 20 l~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~yF~sKe 59 (203)
T 3ccy_A 20 IERAAAMFARQGYSE-TSIGDIARACECSKSRLYHYFDSKE 59 (203)
T ss_dssp HHHHHHHHHHTCTTT-SCHHHHHHHTTCCGGGGTTTCSCHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcCeeeeeeCCHH
Confidence 344455677776543 3467889999999999999998873
No 140
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=26.59 E-value=13 Score=20.73 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCcccceeccccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
..+||..+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 567999999999999999876543
No 141
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=25.84 E-value=51 Score=20.08 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccc
Q psy9614 29 LHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 29 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR 69 (103)
+......|....|- ......+|...|++...|-..|.|+-
T Consensus 22 l~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (211)
T 3him_A 22 RAAAIEVFAAKGYG-ATTTREIAASLDMSPGAVYPHYKTKE 61 (211)
T ss_dssp HHHHHHHHHHHCST-TCCHHHHHHHTTCCTTSSTTTCSSHH
T ss_pred HHHHHHHHHHcCCC-cCCHHHHHHHhCCCcChhhhcCCCHH
Confidence 34444557776654 34466789999999999999998874
No 142
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=25.81 E-value=23 Score=22.99 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=28.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 30 HQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 30 ~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
......|....| .......||...|++...|-..|.|+-.
T Consensus 50 ~AA~~lf~~~G~-~~~t~~~IA~~aGvs~~tlY~~F~sK~~ 89 (255)
T 3g1o_A 50 ATAENLLEDRPL-ADISVDDLAKGAGISRPTFYFYFPSKEA 89 (255)
T ss_dssp HHHHHHHTTSCG-GGCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHcCC-ccCcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 334444666554 3344667899999999999999988743
No 143
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.83 E-value=32 Score=18.97 Aligned_cols=43 Identities=9% Similarity=0.025 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHhcCCCcccceecc
Q psy9614 23 TFTTYQLHQLERAFDK-----TQYPDVFTREDLASRLDLSEARVQVNS 65 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~V~vWF 65 (103)
.++..+...+...|.. +.+.+..+...+...+|++...+...|
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4678888888888865 345667777776677787766555544
No 144
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=24.66 E-value=63 Score=19.80 Aligned_cols=38 Identities=13% Similarity=-0.036 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccc
Q psy9614 31 QLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 31 ~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR 69 (103)
.....|....|- ......+|...|++...|-..|.|+-
T Consensus 27 aA~~lf~~~G~~-~~t~~~IA~~agvs~~tlY~~F~sK~ 64 (216)
T 3qqa_A 27 VALELFLTKGYQ-ETSLSDIIKLSGGSYSNIYDGFKSKE 64 (216)
T ss_dssp HHHHHHHHTCTT-TCCHHHHHHHHTTSCCSSSCSCCSHH
T ss_pred HHHHHHHHcChh-hCCHHHHHHHhCCCHHHHHHhcCCHH
Confidence 344456666654 34466789999999999999998874
No 145
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=24.62 E-value=16 Score=23.55 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 31 QLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 31 ~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
.....|....| .......+|...|++...|-..|.|+-.
T Consensus 52 aA~~lf~e~G~-~~~t~~~IA~~aGvs~~tlY~~F~sK~~ 90 (236)
T 3q0w_A 52 TAENLLEDRPL-ADISVDDLAKGAGISRPTFYFYFPSKEA 90 (236)
T ss_dssp HHHHHHHHSCG-GGCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHcCc-ccCCHHHHHHHhCCcHHHHHHHCCCHHH
Confidence 33444666654 3344667899999999999999988743
No 146
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=23.94 E-value=22 Score=14.69 Aligned_cols=14 Identities=7% Similarity=-0.062 Sum_probs=10.2
Q ss_pred cccceecccccccc
Q psy9614 58 EARVQVNSDSQIPT 71 (103)
Q Consensus 58 ~~~V~vWFqNrR~k 71 (103)
...|.+-++|||.-
T Consensus 3 kkpvpiiycnrrtg 16 (21)
T 8tfv_A 3 KKPVPIIYCNRRTG 16 (26)
T ss_dssp CCCCCCEEEEGGGT
T ss_pred CCcccEEEEcCccc
Confidence 45677888898864
No 147
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=23.60 E-value=16 Score=19.97 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=19.9
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999987765
No 148
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=23.50 E-value=63 Score=20.00 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHhcCCCc
Q psy9614 21 RTTFTTYQLHQLERAFDK-----TQYPDVFTREDLASRLDLSE 58 (103)
Q Consensus 21 Rt~~s~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~ 58 (103)
.+.+|.+|+..|...|.. +.+.+..+-..+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 467889999999999854 44677777777777777543
No 149
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.50 E-value=41 Score=18.70 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHhcCCCcccceecc
Q psy9614 24 FTTYQLHQLERAFDK-----TQYPDVFTREDLASRLDLSEARVQVNS 65 (103)
Q Consensus 24 ~s~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~V~vWF 65 (103)
++..+...+...|.. +.+.+..+...+...+|++...+..+|
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 50 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIW 50 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHH
Confidence 567788888888854 346777777777777888876666555
No 150
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.41 E-value=27 Score=23.40 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccccccccc
Q psy9614 22 TTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSN 75 (103)
Q Consensus 22 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~k~rr~ 75 (103)
..+++.+..+|.-.+ ..+ .-.++|..+|++...|++...+-+.+.+..
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 468888888888754 222 356789999999999999887666666543
No 151
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=23.24 E-value=15 Score=22.78 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccc
Q psy9614 29 LHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 29 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR 69 (103)
+......|....| . .....+|...|++...|-..|.|+-
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~ 60 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRW 60 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHH
Confidence 3344555888888 5 5788999999999999999998874
No 152
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=23.20 E-value=24 Score=18.74 Aligned_cols=41 Identities=5% Similarity=0.034 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccc
Q psy9614 22 TTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 22 t~~s~~q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR 69 (103)
..++...+..+...... ...+||..+|++...|..|=.+++
T Consensus 9 ~~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 35778887777654332 346899999999999999977654
No 153
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=22.51 E-value=1e+02 Score=18.26 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCC
Q psy9614 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQY 41 (103)
Q Consensus 12 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~~ 41 (103)
......++.+..+|.++...|.........
T Consensus 4 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~ 33 (105)
T 2aje_A 4 MLEDPQRRIRRPFSVAEVEALVQAVEKLGT 33 (105)
T ss_dssp -----CCCCCCSCCHHHHHHHHHHHHHHCS
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 344567888899999999999888877553
No 154
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.50 E-value=76 Score=20.17 Aligned_cols=29 Identities=7% Similarity=-0.134 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHhcCC-Ccccceeccccccc
Q psy9614 42 PDVFTREDLASRLDL-SEARVQVNSDSQIP 70 (103)
Q Consensus 42 p~~~~r~~La~~l~l-~~~~V~vWFqNrR~ 70 (103)
.+..+...|...+.= ....|..||-||+.
T Consensus 59 Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~k 88 (152)
T 3iz6_M 59 LSAEEMDRLMAVVHNPRQFKVPDWFLNRKK 88 (152)
T ss_dssp SCHHHHHHHHHHHHSCSSCCCCCCSCSCCC
T ss_pred CCHHHHHHHHHHHHhhcccCcchhhhhhhc
Confidence 455555555555432 23457789999873
No 155
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=22.34 E-value=23 Score=21.64 Aligned_cols=40 Identities=13% Similarity=-0.011 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 29 LHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 29 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
+..-...|....|- .....+|...|++...|-..|.|+-.
T Consensus 15 l~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~ 54 (190)
T 3jsj_A 15 LEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDE 54 (190)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 44455567777766 66788999999999999999988743
No 156
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=22.27 E-value=18 Score=19.24 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
...||..+|++...|..|-.+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999998887654
No 157
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=22.17 E-value=71 Score=19.08 Aligned_cols=39 Identities=8% Similarity=-0.032 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceecccccc
Q psy9614 30 HQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 30 ~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR 69 (103)
......|....|-. .....+|...|++...|-..|.|+-
T Consensus 14 ~aA~~l~~~~G~~~-~s~~~IA~~agvs~~tly~~F~sK~ 52 (180)
T 2fd5_A 14 GAATQALLERGAVE-PSVGEVMGAAGLTVGGFYAHFQSKD 52 (180)
T ss_dssp HHHHHHHHHHTTTS-CCHHHHHHHTTCCGGGGGGTCSCHH
T ss_pred HHHHHHHHHhCccc-CCHHHHHHHhCCCccHHHHHCCCHH
Confidence 33444576666543 3466789999999999999999874
No 158
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=22.15 E-value=46 Score=20.37 Aligned_cols=41 Identities=7% Similarity=0.097 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 29 LHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 29 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
+.+....|....|- ......+|...|++...+-..|.|+-.
T Consensus 19 l~aa~~lf~~~G~~-~~tv~~Ia~~agvs~~t~Y~~F~sK~~ 59 (195)
T 2iu5_A 19 AKAFKDLMQSNAYH-QISVSDIMQTAKIRRQTFYNYFQNQEE 59 (195)
T ss_dssp HHHHHHHHHHSCGG-GCCHHHHHHHHTSCGGGGGGTCSSHHH
T ss_pred HHHHHHHHHhCCCC-eeCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34455557776653 345678899999999999999988743
No 159
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=22.14 E-value=18 Score=19.29 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
..+||..+|++...|..|-.+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999987654
No 160
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=22.12 E-value=49 Score=19.93 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 29 LHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 29 ~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
+..-...|....|- ......+|...|++...|-..|.|+-.
T Consensus 18 l~aA~~lf~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~ 58 (199)
T 3on2_A 18 LARAESTLEKDGVD-GLSLRQLAREAGVSHAAPSKHFRDRQA 58 (199)
T ss_dssp HHHHHHHHHHHCGG-GCCHHHHHHHTC-----CCCSSSSHHH
T ss_pred HHHHHHHHHhcChh-hhhHHHHHHHhCCChHHHHHHhCCHHH
Confidence 33444556666543 334667899999999999999988743
No 161
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=21.67 E-value=80 Score=19.94 Aligned_cols=29 Identities=3% Similarity=-0.133 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHhcCCC-cccceeccccccc
Q psy9614 42 PDVFTREDLASRLDLS-EARVQVNSDSQIP 70 (103)
Q Consensus 42 p~~~~r~~La~~l~l~-~~~V~vWFqNrR~ 70 (103)
.+..+...|...+.=+ ...|..||-||+.
T Consensus 61 Lt~~ei~~l~~~i~~~~~~~iP~w~lNR~k 90 (146)
T 3u5c_S 61 LTQEELERIVQIMQNPTHYKIPAWFLNRQN 90 (146)
T ss_dssp CCHHHHHHHHHHHTCTTTTTCCSTTCTBCS
T ss_pred CCHHHHHHHHHHHHhhcccCccHHHhhhhh
Confidence 5666777776666422 3457789999863
No 162
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=21.31 E-value=98 Score=18.75 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHhh-------cCCCCHHHHHHHHHhcCCCc
Q psy9614 23 TFTTYQLHQLERAFDK-------TQYPDVFTREDLASRLDLSE 58 (103)
Q Consensus 23 ~~s~~q~~~Le~~F~~-------~~~p~~~~r~~La~~l~l~~ 58 (103)
.+|.+|+..|..+|.. ..+.+..+...+...+|+..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 5789999999998853 23677777777777888653
No 163
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=21.22 E-value=17 Score=20.21 Aligned_cols=23 Identities=4% Similarity=0.127 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
...||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 164
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=21.05 E-value=74 Score=20.58 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHhcCCCcccc
Q psy9614 28 QLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 61 (103)
Q Consensus 28 q~~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 61 (103)
-+.+|...=+...|.+......+|..|+|+...|
T Consensus 27 li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 27 IMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHH
Confidence 3445554444557999999999999999998766
No 165
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=20.98 E-value=19 Score=19.26 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999987653
No 166
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=20.83 E-value=38 Score=19.71 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHhcCCCcccceecc
Q psy9614 21 RTTFTTYQLHQLERAFDK-----TQYPDVFTREDLASRLDLSEARVQVNS 65 (103)
Q Consensus 21 Rt~~s~~q~~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~V~vWF 65 (103)
...++..+...+...|.. +.+.+..+...+...+|++...|..++
T Consensus 13 ~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~ 62 (110)
T 1iq3_A 13 PWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIW 62 (110)
T ss_dssp SCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 345777788888888855 345667777666667788777666655
No 167
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.67 E-value=1.2e+02 Score=18.02 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=30.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCH-HHHHHHHHhcCCCccccee
Q psy9614 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDV-FTREDLASRLDLSEARVQV 63 (103)
Q Consensus 16 ~~rr~Rt~~s~~q~~~Le~~F~~~~~p~~-~~r~~La~~l~l~~~~V~v 63 (103)
++......-|.+|+..-+..+..+. |+. .....|+..+|+++..+..
T Consensus 12 ~~~~~~~~aTaeQ~rLAq~i~~~~d-~d~eekVk~L~EmtG~seeeAr~ 59 (104)
T 1wj7_A 12 TQHKQRPQATAEQIRLAQMISDHND-ADFEEKVKQLIDITGKNQDECVI 59 (104)
T ss_dssp CTTCCSSSSSHHHHHHHHHHHHSCC-HHHHHHHHHHHHHTCCCHHHHHH
T ss_pred CccccccccCHHHHHHHHHHhcCCc-ccHHHHHHHHHHhhCCCHHHHHH
Confidence 4444556789999998887765543 443 3455567776877655443
No 168
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.66 E-value=42 Score=19.86 Aligned_cols=23 Identities=0% Similarity=-0.051 Sum_probs=18.4
Q ss_pred HHHHHHhcCCCcccceecccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQI 69 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR 69 (103)
..+||..+|++...|..|=.+++
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45788999999999999976654
No 169
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.48 E-value=16 Score=22.97 Aligned_cols=38 Identities=8% Similarity=0.001 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 31 QLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 31 ~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
.....|.... .......+|...|++...|-..|.|+-.
T Consensus 28 aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~ 65 (215)
T 2hku_A 28 AATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKER 65 (215)
T ss_dssp HHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3344466655 6667788999999999999999988743
No 170
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=20.34 E-value=45 Score=20.48 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=22.9
Q ss_pred HhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 36 FDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 36 F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
|....| .......+|...|++...+-..|.|+-.
T Consensus 38 f~~~G~-~~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 71 (212)
T 3nxc_A 38 ESSDGS-QRITTAKLAASVGVSEAALYRHFPSKTR 71 (212)
T ss_dssp HC-------CCHHHHHHHTTSCHHHHHTTCSSHHH
T ss_pred HhcCCh-hhcCHHHHHHHhCCChhHHHHHCCCHHH
Confidence 444443 4455678899999999999999988743
No 171
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=20.19 E-value=32 Score=21.91 Aligned_cols=39 Identities=5% Similarity=-0.055 Sum_probs=23.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHhcCCCcccceeccccccc
Q psy9614 31 QLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 31 ~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
.-...|....|- ......+|...|++...|-..|.||-.
T Consensus 43 AA~~lf~~~G~~-~~s~~~IA~~AGvs~~tlY~~F~sKe~ 81 (237)
T 3kkd_A 43 AAMRLIVRDGVR-AVRHRAVAAEAQVPLSATTYYFKDIDD 81 (237)
T ss_dssp HHHHHHHHHCGG-GCCHHHHHHHHTSCTTTC-----CHHH
T ss_pred HHHHHHHhcChh-hcCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 334447666653 344667899999999999999988743
No 172
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=20.01 E-value=25 Score=19.50 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=20.2
Q ss_pred HHHHHHhcCCCcccceeccccccc
Q psy9614 47 REDLASRLDLSEARVQVNSDSQIP 70 (103)
Q Consensus 47 r~~La~~l~l~~~~V~vWFqNrR~ 70 (103)
...||..+|++...|..|-.+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999887654
Done!