RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9614
(103 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 67.5 bits (166), Expect = 1e-16
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RR RTTFT QL +LE+ F+K +YP RE+LA +L L+E +V+V
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKV 46
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 58.8 bits (143), Expect = 2e-13
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RR RT+FT QL +LE+ F K YP RE+LA +L LSE +V+V
Sbjct: 2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKV 47
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 58.8 bits (143), Expect = 3e-13
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RR RT FT QL +LE+ F+K YP RE+LA L L+E +V++
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKI 46
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 37.4 bits (87), Expect = 3e-04
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 8 PGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ + R T QL LER F+ YP TR L+ L++ VQ+
Sbjct: 42 ERKQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQI 97
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family.
Length = 399
Score = 29.2 bits (66), Expect = 0.27
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 1 MFFYFFPPGSANKPRKIRRSRTTFTTY 27
++ F GSA R+ T
Sbjct: 202 FGWFGFNAGSALTANGRARAIAAVNTN 228
>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase,
plant specific subfamily. Some members of this
plant-specific family of O-fucosyltransferases have been
annotated as auxin-independent growth promotors. The
function of the protein seems unclear.
O-fucosyltransferase-like proteins are GDP-fucose
dependent enzymes with similarities to the family 1
glycosyltransferases (GT1). They are soluble ER proteins
that may be proteolytically cleaved from a
membrane-associated preprotein, and are involved in the
O-fucosylation of protein substrates, the core
fucosylation of growth factor receptors, and other
processes.
Length = 290
Score = 27.5 bits (62), Expect = 1.0
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 12/47 (25%)
Query: 41 YPDVFTREDLASRLDLSEAR------------VQVNSDSQIPTLGSN 75
+P+++T+E LA+ +L+ V + SD +PT G N
Sbjct: 227 FPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGGN 273
>gnl|CDD|113755 pfam04996, AstB, Succinylarginine dihydrolase. This enzyme
transforms N(2)-succinylglutamate into succinate and
glutamate. This is the fifth and last step in arginine
catabolism by the arginine succinyltransferase pathway.
Length = 439
Score = 27.1 bits (60), Expect = 1.8
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 39 TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQIV 81
Y D + DLA L EAR ++ +QI TLGS Q V
Sbjct: 397 RWYRDRLSPADLADPQLLEEAREALDELTQILTLGSVYPFQTV 439
>gnl|CDD|226247 COG3724, AstB, Succinylarginine dihydrolase [Amino acid transport
and metabolism].
Length = 442
Score = 26.7 bits (59), Expect = 2.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 39 TQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLGS 74
Y D T DLA L E R ++ +QI LGS
Sbjct: 400 RYYRDRLTAADLADPQLLREGREALDELTQILNLGS 435
>gnl|CDD|215946 pfam00491, Arginase, Arginase family.
Length = 268
Score = 26.0 bits (58), Expect = 4.2
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 6 FPPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV-QVN 64
PG+ P IR + Y+L++L DV D L+ E V +
Sbjct: 16 GRPGARFGPDAIREASANLELYELYELSLGLKVVDLGDVAVPPDPEDVLERIEEAVAAIL 75
Query: 65 SDSQIP-TLG 73
+ + P LG
Sbjct: 76 AAGKFPLVLG 85
>gnl|CDD|176541 cd08599, PI-PLCc_plant, Catalytic domain of plant
phosphatidylinositide-specific phospholipases C. This
family corresponds to the catalytic domain present in a
group of phosphoinositide-specific phospholipases C
(PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher
plants, which are homologs of mammalian PI-PLC in terms
of overall sequence similarity and domain organization.
Mammalian PI-PLC is a signaling enzyme that hydrolyzes
the membrane phospholipids
phosphatidylinositol-4,5-bisphosphate (PIP2) to
generate two important second messengers in eukaryotic
signal transduction cascades, inositol
1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG).
InsP3 triggers inflow of calcium from intracellular
stores, while DAG, together with calcium, activates
protein kinase C, which then phosphorylates other
molecules, leading to altered cellular activity. Calcium
is required for the catalysis. The domain arrangement of
plant PI-PLCs is structurally similar to the mammalian
PLC-zeta isoform, which lacks the N-terminal pleckstrin
homology (PH) domain, but contains EF-hand like motifs
(which are absent in a few plant PLCs), a PLC catalytic
core domain with X- and Y- highly conserved regions
split by a linker sequence, and a C2 domain. However, at
the sequence level, the plant PI-PLCs are closely
related to the mammalian PLC-delta isoform. Experiments
show that plant PLCs display calcium dependent PLC
catalytic properties, although they lack some of the
N-terminal motifs found in their mammalian counterparts.
A putative calcium binding site may be located at the
region spanning the X- and Y- domains.
Length = 228
Score = 25.8 bits (57), Expect = 4.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 33 ERAFDKTQYPDVFTREDLASRLDLSEA 59
E AF ++YP + T E+ S ++A
Sbjct: 81 ENAFTASEYPVIITLENHLSPELQAKA 107
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 25.8 bits (57), Expect = 4.6
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 44 VFTREDLASRLDLSEARVQVNSDSQIPTLGSNEKVQIVVTSDFT 87
+F + + RL S ARV V T GS++ ++ TS T
Sbjct: 64 LFGPDAVEHRLRDSGARVLV-------TDGSDDPAILIYTSGTT 100
>gnl|CDD|114900 pfam06208, BDV_G, Borna disease virus G protein. This family
consists of Borna disease virus G glycoprotein
sequences. Borna disease virus (BDV) infection produces
a variety of clinical diseases, from behavioural
illnesses to classical fatal encephalitis. G protein is
important for viral entry into the host cell.
Length = 503
Score = 25.8 bits (56), Expect = 4.9
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 9 GSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDV 44
GS KP++IR ++T+ Y L + E + + T D+
Sbjct: 377 GSGVKPKRIRYNKTSH-DYHLEEFEASLNMTPQLDI 411
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional.
Length = 436
Score = 25.9 bits (57), Expect = 5.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 4 YFFPPGSANKPRKIRRSRTTFTTYQLHQ 31
Y++ PG KP++IR + +Y L++
Sbjct: 17 YYYGPGHPMKPQRIRMAHALILSYDLYK 44
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 25.8 bits (57), Expect = 5.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 76 EKVQIVVTSDFTSKCAETLAHK 97
E+V V S FTS+ AE LA K
Sbjct: 61 EEVSFVYRSQFTSEPAEKLAKK 82
>gnl|CDD|225891 COG3355, COG3355, Predicted transcriptional regulator
[Transcription].
Length = 126
Score = 24.9 bits (55), Expect = 6.4
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 45 FTREDLASRLDLSEARVQ 62
T ++LA L+ S + V
Sbjct: 43 LTVDELAEILNRSRSTVY 60
>gnl|CDD|217500 pfam03337, Pox_F12L, Poxvirus F12L protein.
Length = 651
Score = 25.4 bits (56), Expect = 7.5
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 20 SRTTFTTYQLHQLERAFDKTQYP---DVFTREDLASRLDLSEARVQVNSDSQIPTLGSNE 76
+ + Y+L + R YP + +E +L ++ V D +IP L +++
Sbjct: 447 APKPYRCYRLKSVLRVIASGLYPVGKPYYVKELTRGKLYIALCEVTRKPDVRIPVLFADD 506
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.129 0.363
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,917,435
Number of extensions: 381942
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 24
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)