RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9614
(103 letters)
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 94.4 bits (235), Expect = 2e-27
Identities = 33/54 (61%), Positives = 43/54 (79%)
Query: 10 SANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RK RRSRTTF+ QL +LERAF++TQYPD++TRE+LA R +L+EAR+QV
Sbjct: 11 GIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQV 64
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 93.6 bits (233), Expect = 6e-27
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+R+RT+FT Q+ LE+ F++T YPDVF RE LA+++DL EAR+QV
Sbjct: 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 53
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 92.0 bits (229), Expect = 2e-26
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RR RT FT QL LE F +T+YPDV TRE LA ++ L E +V+V
Sbjct: 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEV 53
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Mus musculus}
Length = 80
Score = 90.6 bits (225), Expect = 1e-25
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RR RTTFT QL LE F KT+YPD+F RE++A +++L E+RVQV
Sbjct: 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQV 53
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 88.5 bits (220), Expect = 4e-25
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RR RT FT+ QL QLE F + +YPD+ TRE++A +L+EARV+V
Sbjct: 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRV 49
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain
variant, DNA binding protein, developmental protein,
disease mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 88.1 bits (219), Expect = 6e-25
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RR RT FT Q+ LE F YP + EDLA +L+L R+Q+
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQI 47
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 87.1 bits (216), Expect = 2e-24
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ +R RT+F +QL ++ F PD + LA + L++ +QV
Sbjct: 2 SSGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQV 53
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 86.1 bits (214), Expect = 3e-24
Identities = 27/44 (61%), Positives = 37/44 (84%)
Query: 20 SRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
S TFT++QL +LE+AF +T YPDVFTRE+LA ++ L+EAR+QV
Sbjct: 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV 45
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 83.9 bits (208), Expect = 2e-23
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ R SRT FT YQL L+ FD YP E L++ L+L + V
Sbjct: 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVV 53
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding
protein, homeodomain, LIM domain; NMR {Rattus
norvegicus} SCOP: a.4.1.1
Length = 66
Score = 78.9 bits (195), Expect = 2e-21
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
K R RT QLH L + PD +E L LS ++V
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRV 49
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 80
Score = 77.9 bits (192), Expect = 1e-20
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+P++ +R RTT T QL L + + P + +A + L + VQV
Sbjct: 7 GGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQV 63
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 73.6 bits (181), Expect = 4e-19
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 18 RRSRTTFTTYQLHQLERAFDKT-QYPDVFTREDLASRLDLSEARVQV 63
T T Q+ LE F+K ++PD T +A+ L+E + Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 48
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 70.1 bits (172), Expect = 7e-18
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 11 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ +R RT T QL L + FD P +++A + L + ++
Sbjct: 1 GSSGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKH 53
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 69.8 bits (171), Expect = 1e-17
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 18 RRSRTTFTTYQLHQLERAFDKT-QYPDVFTREDLASRLDLSEARVQV 63
++ + T Q+ LE F+K ++PD T +A+ L+E + Q
Sbjct: 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 49
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription
factor, structural genomics, loop insertion, NPPSFA;
NMR {Homo sapiens} SCOP: a.4.1.1
Length = 95
Score = 65.0 bits (158), Expect = 1e-15
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
Query: 11 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLD--------------- 55
+ R SR T+ L +E F++ QYPD RE++A+ +
Sbjct: 1 GSSGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLER 60
Query: 56 LSEARVQV 63
++ +V
Sbjct: 61 VTSLKVYN 68
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 64.7 bits (157), Expect = 7e-15
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+P K R+ RT+FT + L F+K P ++A L+ V+V
Sbjct: 83 MEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRV 139
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 63.0 bits (152), Expect = 7e-14
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSD 66
P G +K RR+R + L +A+++ + P RE L + +E + S
Sbjct: 105 PTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSP 164
Query: 67 SQIPTLGSN 75
SQ LGSN
Sbjct: 165 SQAQGLGSN 173
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 60.1 bits (146), Expect = 8e-14
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ + QL L+ +F + Q+P E L LS V+
Sbjct: 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRK 54
>1lfb_A Liver transcription factor (LFB1); transcription regulation;
2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 59.8 bits (144), Expect = 2e-13
Identities = 21/84 (25%), Positives = 38/84 (45%)
Query: 9 GSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQ 68
+ +K RR+R + L +A+++ + P RE L + +E + S SQ
Sbjct: 1 ARIDPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQ 60
Query: 69 IPTLGSNEKVQIVVTSDFTSKCAE 92
LGSN ++ V + F ++ E
Sbjct: 61 AQGLGSNLVTEVRVYNWFANRRKE 84
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 61.2 bits (148), Expect = 2e-13
Identities = 14/63 (22%), Positives = 19/63 (30%)
Query: 1 MFFYFFPPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEAR 60
+ R+ RT+ LE F K P LA L L +
Sbjct: 83 SSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEV 142
Query: 61 VQV 63
V+V
Sbjct: 143 VRV 145
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 60.0 bits (144), Expect = 1e-12
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSD 66
S +K+RR+R + L +A+D+ + P RE L + +E + S
Sbjct: 132 DACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSP 191
Query: 67 SQIPTLGSNEKVQIVV 82
S+ LGSN ++ V
Sbjct: 192 SKAHGLGSNLVTEVRV 207
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 58.6 bits (141), Expect = 2e-12
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 6 FPPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
S + +R RT+ LE F K+ P + +A++L L + V+V
Sbjct: 85 EISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRV 142
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 58.1 bits (140), Expect = 2e-12
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ R+ RTT + LER F + P +A L+L + V+V
Sbjct: 77 YNEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRV 133
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 54.0 bits (130), Expect = 2e-11
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 9 GSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 61
S P K R+ R FT Q ++LER F + +Y RE LAS + L+ +V
Sbjct: 1 ASDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQV 53
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 52.9 bits (127), Expect = 6e-11
Identities = 24/57 (42%), Positives = 31/57 (54%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
K +K RRSRT FT QL LE+ F+K +Y R DLA L LS+ +V+
Sbjct: 7 GGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKT 63
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 52.1 bits (125), Expect = 9e-11
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
T Q+ L+ +F ++Q+PD L L+ + ++
Sbjct: 5 HHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKK 50
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 52.6 bits (126), Expect = 1e-10
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 8 PGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
P P K ++ RT+FT Q+ +LE+ F K +Y R LA L +++A+V+
Sbjct: 8 PYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKT 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 53.0 bits (127), Expect = 2e-10
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ R+ RT+ T LE++F + Q P +A +L++ + ++V
Sbjct: 91 NSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRV 147
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 50.9 bits (122), Expect = 3e-10
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 12 NKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ R+ RT ++++QL L+R F KTQY + R +LA+ L L++ +V++
Sbjct: 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 53
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for
eukaryotic structural genomics; NMR {Homo sapiens}
Length = 84
Score = 51.0 bits (122), Expect = 3e-10
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
P K +++RT F++ QL L F + +Y + ++L++ L+LS +V+
Sbjct: 12 AKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKT 68
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 49.9 bits (120), Expect = 5e-10
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 61
R+ R F+ Q+++LER F + +Y R+ LAS L L+ +V
Sbjct: 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQV 46
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 49.6 bits (119), Expect = 7e-10
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 61
R+ RT FTT QL LER F + QY + R + +S L L+E +V
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQV 44
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 49.0 bits (117), Expect = 1e-09
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 16 KIRRSRTTFTTYQLHQLERAFDKTQ-YPDVFTREDLASRLDLSEARVQV 63
RSRT + L L+ YPD L+++LDL + +
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIK 54
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 48.1 bits (115), Expect = 3e-09
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 61
R+ R F+ Q+++LER F + +Y RE LAS + L+ +V
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQV 46
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1f43_A 1yrn_A*
Length = 61
Score = 48.0 bits (115), Expect = 3e-09
Identities = 10/51 (19%), Positives = 25/51 (49%)
Query: 13 KPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
K K + +++ + LE F + Q + +E++A + ++ +V+V
Sbjct: 1 KKEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRV 51
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein,
transcription regulation, NUC homeobox; 2.6A {Mus
musculus}
Length = 62
Score = 47.3 bits (113), Expect = 6e-09
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARV 61
++ RT F+ QL L+ F K +Y + ++L+S L+LS +V
Sbjct: 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQV 47
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 69
Score = 47.3 bits (113), Expect = 6e-09
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 16 KIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ + Q+ +LER F +Y R LA L L+E +V++
Sbjct: 3 HHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 50
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 47.6 bits (112), Expect = 3e-08
Identities = 10/61 (16%), Positives = 21/61 (34%)
Query: 3 FYFFPPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQ 62
++ ++ R FT Q L F + + P + ++ +L L + V
Sbjct: 83 KRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 142
Query: 63 V 63
Sbjct: 143 N 143
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 44.3 bits (105), Expect = 1e-07
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 11 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ + + F+ Q +LE+ F+ +Y R+ LA L LSE +V+
Sbjct: 1 GSSGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKT 53
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 43.4 bits (102), Expect = 3e-07
Identities = 12/54 (22%), Positives = 19/54 (35%)
Query: 10 SANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
S P + T Q+ LE +F K+ +P + L LS +
Sbjct: 6 SGAYPDFAPQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDS 59
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 41.9 bits (99), Expect = 6e-07
Identities = 17/46 (36%), Positives = 32/46 (69%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+R RT F++ QL +L+R F++ +Y R+ L+S L L+EA++++
Sbjct: 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKI 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 41.5 bits (98), Expect = 8e-07
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 22 TTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
T+F+ Q+ +LER F + +Y R LA L +++A+V+
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKT 43
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 41.6 bits (98), Expect = 1e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 17 IRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+RR RT FT QL +LE+ F K Y R +LA++L+L E+ ++V
Sbjct: 1 VRRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKV 47
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double
helix, helix-turn-helix; NMR {Drosophila melanogaster}
SCOP: a.4.1.1
Length = 68
Score = 41.6 bits (98), Expect = 1e-06
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RR+RTTFT+ Q+ +LE+ F + +Y DL+++L L A+V++
Sbjct: 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKI 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 41.0 bits (96), Expect = 2e-06
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 9 GSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
GS+ + QL LE +F + P + L S ++ +
Sbjct: 1 GSSGSSGPTKYKERA--PEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDS 53
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 40.8 bits (95), Expect = 4e-06
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 25 TTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
T QL L+ +F + L ++ L+ +
Sbjct: 19 TAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDA 57
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 39.5 bits (92), Expect = 1e-05
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
S RT FTT QL +LE+ F +Y R ++A+ L+L+E +V++
Sbjct: 24 AKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKI 80
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 39.4 bits (91), Expect = 1e-05
Identities = 13/57 (22%), Positives = 19/57 (33%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
T QLH L+ AF +TQ+P + LA L+ +
Sbjct: 15 LFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVS 71
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain;
protein-DNA complex, transcription/DNA complex; 2.42A
{Mesocricetus auratus}
Length = 63
Score = 37.0 bits (86), Expect = 7e-05
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+R+RT +T QL +LE+ F +Y R +LA L+L+E +++
Sbjct: 4 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKI 49
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 37.5 bits (86), Expect = 8e-05
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 14 PRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQVNSDSQIPTLG 73
R+R + L +A+D+ + P RE L + +E + S S+ LG
Sbjct: 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLG 62
Query: 74 SNEKVQIVVTSDFTSK 89
SN ++ V + F ++
Sbjct: 63 SNLVTEVRVYNWFANR 78
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 37.1 bits (86), Expect = 9e-05
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ N + +R RT++T YQ +LE+ F +Y R ++A L L+E ++++
Sbjct: 18 GTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 74
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 35.6 bits (82), Expect = 2e-04
Identities = 11/53 (20%), Positives = 25/53 (47%)
Query: 11 ANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ R+ R ++ QL +LER + ++ R +++ LSE ++ +
Sbjct: 1 GSSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITI 53
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA;
NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 35.1 bits (81), Expect = 4e-04
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+R R T+T YQ +LE+ F +Y R ++A L L+E ++++
Sbjct: 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 48
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing
factor, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.4.1.1
Length = 76
Score = 35.0 bits (80), Expect = 5e-04
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 19 RSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
S T QL L+ F + Q+ + L L +
Sbjct: 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQ 49
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens}
PDB: 2ld5_A*
Length = 73
Score = 34.4 bits (79), Expect = 6e-04
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 15 RKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
+ R+ R +T QL +LER + ++ R +++ +LSE +V +
Sbjct: 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 53
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 34.4 bits (79), Expect = 8e-04
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 18 RRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
RR R T+T YQ +LE+ F Y R ++A L L+E ++++
Sbjct: 21 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKI 66
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA
complex, HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 34.4 bits (79), Expect = 9e-04
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 7 PPGSANKPRKIRRSRTTFTTYQLHQLERAFDKTQYPDVFTREDLASRLDLSEARVQV 63
P + R R+ R +T +Q +LE+ F Y R ++A L+L+E +V++
Sbjct: 3 PAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKI 59
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 32.1 bits (73), Expect = 0.006
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 19 RSRTTFTTYQLHQLERAFDK-TQYPDVFTREDLASRLDLSEARVQV 63
+ LE+ F T+YPD + L+ +LD S ++Q
Sbjct: 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 55
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 28.8 bits (65), Expect = 0.29
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 45 FTREDLASRLDLSEARVQVNSDSQIPTL 72
D+ RL +S+A+ V D I +
Sbjct: 133 MKSTDILYRLQMSKAKAIVAGDEVIQEV 160
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 64
Score = 27.1 bits (60), Expect = 0.33
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 32 LERAF-DKTQYPDVFTREDLASRLDLSEARVQV 63
LE+ F T++PD E L+ +LD +Q
Sbjct: 15 LEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQR 47
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 0.73
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 7/30 (23%)
Query: 50 LASRLDLSEARVQVNSDSQIPTLGSNEKVQ 79
L + L L DS P L ++
Sbjct: 25 LQASLKLYAD------DSA-PALAIKATME 47
>2w48_A Sorbitol operon regulator; SORC, activator, repressor,
DNA-binding, transcription, transcription regulator,
transcription regulation; 3.20A {Klebsiella pneumoniae}
Length = 315
Score = 27.5 bits (61), Expect = 0.76
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 41 YPDVFTREDLASRLDLSEARVQ 62
Y T+ +A L + +
Sbjct: 18 YEQDMTQAQIARELGIYRTTIS 39
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 26.3 bits (59), Expect = 2.0
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 46 TREDLASRLDLSEARVQVNS 65
TR+D+ L L++ +Q++S
Sbjct: 188 TRQDIVRLLGLNDPLIQISS 207
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 25.6 bits (57), Expect = 3.6
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 45 FTREDLASRLDLSEARVQVNSDS 67
D+ R++ + ++ V
Sbjct: 145 LKTRDIVYRIEKAGLKMIVCIAE 167
>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase,
structural repeat; HET: HEM; 1.45A {Escherichia coli}
SCOP: e.62.1.1 PDB: 1u9t_A
Length = 354
Score = 25.3 bits (55), Expect = 4.1
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 20 SRTTFTTYQLHQLERAFD--KTQYPDVFTREDLASRLDLSEA 59
S + + K Q P + R D+A +++ EA
Sbjct: 3 SSHHHHHHGSMNHYTRWLELKEQNPGKYAR-DIAGLMNIREA 43
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 25.3 bits (56), Expect = 4.3
Identities = 8/49 (16%), Positives = 12/49 (24%), Gaps = 16/49 (32%)
Query: 28 QLHQLERAFDKTQYPDV-----------FTREDLASRLDLSEARVQVNS 65
L L K Q+P+ D L + + S
Sbjct: 190 ALGIL-----KRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS 233
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; 1.75A {Thermotoga maritima} SCOP:
a.24.16.3
Length = 135
Score = 25.1 bits (54), Expect = 4.5
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 27 YQLHQLERAFDKTQYPDVFTREDLASRLDLSEAR 60
+L++A T+YPD +R EA
Sbjct: 82 DHALELDKACIPTRYPDALPSGSPRNRYSRIEAE 115
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 25.2 bits (56), Expect = 5.2
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 45 FTREDLASRLDLSEARVQVNSDSQIPTL------GSNEKVQIVVTSD 85
T D L S AR + S + + + ++ Q++V+
Sbjct: 107 LTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQP 153
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 24.2 bits (52), Expect = 9.6
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 3 FYFFPPGSANKPRKIRRSRTTFTTYQL 29
+PP +NK + + F Y L
Sbjct: 107 LVVYPPAESNKQSQFEWKTSPFYQYSL 133
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity,
CRP, CLP, C-DI-GMP receptor, quorum SENS binding,
transcription; 2.30A {Xanthomonas campestris PV}
Length = 230
Score = 24.2 bits (53), Expect = 9.8
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 29 LHQLERAFDKTQYPDVF----TREDLASRLDLS 57
LH L + + +P +R++LA + S
Sbjct: 168 LHDLSKEPEAMSHPQGTQLRVSRQELARLVGCS 200
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM,
iron, trans ION transport, proteobacteria, iron
transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica}
SCOP: e.62.1.1 PDB: 2j0r_A*
Length = 345
Score = 24.1 bits (52), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 38 KTQYPDVFTREDLASRLDLSEA 59
K P + R DLA+ + +SEA
Sbjct: 13 KADNPGKYAR-DLATLMGISEA 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.129 0.363
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,408,919
Number of extensions: 65515
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 77
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)